Another interesting article on CoVs in pangolin:
Liu, P.; Chen, W.; Chen, J.-P. Viral Metagenomics Revealed Sendai Virus and Coronavirus Infection of Malayan Pangolins (Manis javanica). Viruses 2019, 11, 979
"All these Malayan pangolins were rescued by the Guangdong Wildlife Rescue Center, however, 16 died after extensive rescue efforts. Most of the dead pangolins had a swollen lung which contained a frothy liquid, as well as the symptom of pulmonary fibrosis, and in the minority of the dead ones, we observed hepatomegaly and splenomegaly."
Most of the pangolins were also infected with Herpes virus, that, please correct me if I am wrong, present a furin cleavage site.
I could not find CoVs sequences submitted in NCBI from this work, but I came to MT084071 (I already posted some information on this sequence here https://flutrackers.com/forum/forum...um/824873-discussion-2019-ncov-genetics/page3), that is not properly sequenced and is most probably related to this work (see author list in the NCBI form below)
LOCUS MT084071 27213 bp RNA linear VRL 20-FEB-2020 DEFINITION Pangolin coronavirus isolate MP789 genomic sequence. ACCESSION MT084071 VERSION MT084071.1 KEYWORDS . SOURCE Pangolin coronavirus ORGANISM Pangolin coronavirus Viruses; Riboviria; Nidovirales; Cornidovirineae; Coronaviridae; Orthocoronavirinae; Betacoronavirus; unclassified Betacoronavirus. REFERENCE 1 (bases 1 to 27213) AUTHORS Jiang,J.-Z., Liu,P. and Chen,J.-P. TITLE Are pangolins an intermediate host of the 2019 novel coronavirus (2019-nCoV) ? JOURNAL Unpublished REFERENCE 2 (bases 1 to 27213) AUTHORS Jiang,J.-Z., Liu,P. and Chen,J.-P. TITLE Direct Submission JOURNAL Submitted (13-FEB-2020) SCSFRI, South China Sea Fisheries Research Institute, Chinese Academy of Fishery Sciences (SCSFRI, CAFS), 231# Xingangxi Road, Haizhu District, Guangzhou, Guangdong 510300, China.
Also this sequence was submitted after the outbreak of SARS-CoV2. I do not know how the Chinese Academy of Fishery Sciences could be interested in the topic.
More details on MT084071 are given in: Genetic evolution analysis of 2019 novel coronavirus and coronavirus from other species Chun Li, Yanling Yang, Linzhu Ren
https://www.sciencedirect.com/science/article/pii/S1567134820301167?via=ihub
They mention: "Moreover, SARS-CoV-2 and pangolin coronavirus is also highly related (Lam et al., 2020; Xiao et al., 2020; Zhang et al., 2020b), but due to incomplete sequence of pangolin coronavirus published in GenBank, reasonable analysis cannot be carried out in this study".
Liu, P.; Chen, W.; Chen, J.-P. Viral Metagenomics Revealed Sendai Virus and Coronavirus Infection of Malayan Pangolins (Manis javanica). Viruses 2019, 11, 979
"All these Malayan pangolins were rescued by the Guangdong Wildlife Rescue Center, however, 16 died after extensive rescue efforts. Most of the dead pangolins had a swollen lung which contained a frothy liquid, as well as the symptom of pulmonary fibrosis, and in the minority of the dead ones, we observed hepatomegaly and splenomegaly."
Most of the pangolins were also infected with Herpes virus, that, please correct me if I am wrong, present a furin cleavage site.
I could not find CoVs sequences submitted in NCBI from this work, but I came to MT084071 (I already posted some information on this sequence here https://flutrackers.com/forum/forum...um/824873-discussion-2019-ncov-genetics/page3), that is not properly sequenced and is most probably related to this work (see author list in the NCBI form below)
LOCUS MT084071 27213 bp RNA linear VRL 20-FEB-2020 DEFINITION Pangolin coronavirus isolate MP789 genomic sequence. ACCESSION MT084071 VERSION MT084071.1 KEYWORDS . SOURCE Pangolin coronavirus ORGANISM Pangolin coronavirus Viruses; Riboviria; Nidovirales; Cornidovirineae; Coronaviridae; Orthocoronavirinae; Betacoronavirus; unclassified Betacoronavirus. REFERENCE 1 (bases 1 to 27213) AUTHORS Jiang,J.-Z., Liu,P. and Chen,J.-P. TITLE Are pangolins an intermediate host of the 2019 novel coronavirus (2019-nCoV) ? JOURNAL Unpublished REFERENCE 2 (bases 1 to 27213) AUTHORS Jiang,J.-Z., Liu,P. and Chen,J.-P. TITLE Direct Submission JOURNAL Submitted (13-FEB-2020) SCSFRI, South China Sea Fisheries Research Institute, Chinese Academy of Fishery Sciences (SCSFRI, CAFS), 231# Xingangxi Road, Haizhu District, Guangzhou, Guangdong 510300, China.
Also this sequence was submitted after the outbreak of SARS-CoV2. I do not know how the Chinese Academy of Fishery Sciences could be interested in the topic.
More details on MT084071 are given in: Genetic evolution analysis of 2019 novel coronavirus and coronavirus from other species Chun Li, Yanling Yang, Linzhu Ren
https://www.sciencedirect.com/science/article/pii/S1567134820301167?via=ihub
They mention: "Moreover, SARS-CoV-2 and pangolin coronavirus is also highly related (Lam et al., 2020; Xiao et al., 2020; Zhang et al., 2020b), but due to incomplete sequence of pangolin coronavirus published in GenBank, reasonable analysis cannot be carried out in this study".