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**gsgs** · September 24, 2014, 04:34 AM

Re: West Africa: Ebola Outbreak Strains Sequenced

Originally posted by JJackson View Post

I think they mean the same. You count the number of single nucleotide changes that occur over a given time.
They found a given rate of change over time while it was replicating in its wild host but over the same period of time in humans they got twice that rate.
An increase in the rate of mutations is found when any organism is adapting to a new environment. Here I suspect the virus is adapting to its new host so the rate of apparent change has doubled. Note it is apparent rate that has changed i.e. the rate that changes have become fixed in the population. The actual rate of SNP substitution probably will not have changed but, absent selection pressure, they are out performed by the wild type. To get actual rate change I would go for an energetic ionizing radiation source - plutonium would do the trick.

twice as much -if correct- would be a surprisingly big increase,
as compared with flu, where I get a ~30% increase and in HA only
in the years after the 1968 pandemic.
The mutation rate itself could be somehow encoded in the genome,
so flu-B mutates at only half the rate as flu-A.
But I never observed an actual change of mutation rate by mutation ?!?

**gsgs** · September 24, 2014, 05:22 AM

Re: Science: Genomic surveillance elucidates Ebola virus origin and transmission during the 2014 outbreak

OK, I got 142 different full ebola_zaire genomes from genbank, (into file: ebozai2)
and aligned them.
I'd count 6 different strains

Code:

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-codon-position-----------------------------------------------------------------------------------------------------------------112 2 211222222 2 1122  22  11212121221 11121 21 11111112111121111111111111111111 111111111111211 121111 1    122 111111111121111 1111 11 1   121121111111211 22  2 2112   212  22222 12 221 2 21121222122222222221 2222222222 2 111 1  1221 2 1122 121 22212222221222222222222222222221222222 212  2 21 2   12 1 22 11222212  211121111 2  1 22 2112 2  112 22222222 22122222222222212222  2221    11  2112 21 2 22112 1  21 12 2 2 11221 2 222 122 2122222222222 22 22221  22 2121112 1122  1 12    22121   1212111211211111111121 1211112112211  121111  221 12212 2 21  1211  2 2  12121 2121 221  1212112  111   22 2 122222221 222222222 2 2112211222221221  121  1 1  2 122121211  2 222222222 22222 22222 2222  2 222 2 22222222222 2222222222221222222222222222222 222222212 222221222222 222222222222222222 12 222222222222 1 22221222  222222 22222222222222222121222212222222222 22222 22222 222  12 21222   2 1 1122 222 222 1 121222 222222222212222 122   222 2222222222 22 2222222222222 2 11 12   1 1 1  1222 1 1 2121   21112121112 1 1  11121221111 2 11 2  
---Index------------------------------------------------------------------------------------------------------------------------TGTACCGGAATCATGTAACGTTACCCCACGCCAATAGAGCGATAAATGGGTTCCATTTATTCAACTGGCCTGAGTGTTCAGGAATTACGGCACCGACGCGCCCGGACCCCCGAGTCTTCCCCATTATTAATTCCATAATTAGACTTTTGCTGCTCAAGTTTTAACCGTTTAGGCTGCCCCTGGCATCGCTGTTAGAAGGTCAGCATTTGTAGAATTCTGGAAACTTAACTTCAGATACTGACCTTAATAGTCGAGGTCCGCCTTCGCGTACTTTTATACGTCTCGAGTTCATATCATCTAACTCGGCTTAGAGCTCACCTACACGGGGGAGATATCTTGACTGAAGTAGTTGTTATATGCTGGGACTCATCGTGGTTCTGGCGCGCAGAAAAGTCTCTCACCTGTGTGAGCCCTTTACGTTCTGCATTGAAGATCTTACACGACGCTGACCTCTCAATCTCCCAACTACCAGCCCCAAGGGAAAAAATCGACACCTTTCAACCACCGATAGCACACAAACATAGAATATATACCCGGTTTATTTACTCTGTCACGGTACAGCAAGCATTCCTCGGTAGGAATACGCGACCTTGAAAGTAAGACAACGTAATCCTAGCACCTACGTATATACAGGACAGGGAACTCCTGTTCTTCAGACTGAAACCGTCACTGGAATAAAGATTCTTGCATCGCACATAGTAGCTCGCTTGCGGAACTCAAACTCATACGAAAGTCTGCCGGCTTTAAAACGCGAGCAATGTCTGCGCCCTAGTTACTAGCCATCCAGTTTAGCTGTTATGCCAACTAAGGTATCAGGCCTAATAAAGAACGTTCAAGCGGACCTACTCCACTTTGTATTATCCCACAGCGAATTTCCCACTTAGGGGAACGGAAGCGAGGAGCTCCAACAGATTCACATGAGCGCATGCAGGTGCTGCTCCGCGGTGGCTCCTAGGGCGATTTTCACACTTTTCCTGTTGTGGATCCAGGTACTGCGCTCTGGATCACGCGGGAATGCTATTCCTTAATCGTCGATGC 
   1 >gi667852840gbKM233069.1, Zaire ebolavirus isolate Ebola virus H.sapiens-wt/SLE/2014/ManoRiver-G3770.1, partial genome     ..........................................................................................................................................................................................G.....................................................................................................................................................................................................................................................................................................................................................................................................................A.......................................................................................................................................A.....................................................................................................................................................................................................................................................................................................................        3      3 ,      3      3       1:>gi667852840gbKM233069.1, Zaire ebolavirus isolate Ebola virus H.sapiens-wt/SLE/2014/ManoRiver-G3770.1, partial genome     
   2 >gi667852851gbKM233070.1, Zaire ebolavirus isolate Ebola virus H.sapiens-wt/SLE/2014/ManoRiver-G3770.2, partial genome     ..........................................................................................................................................................................................G.....................................................................................................................................................................................................................................................................................................................................................................................................................A.......................................................................................................................................A.....................................................................................................................................................................................................................................................................................................................        3      3 ,      3      3       2:>gi667852851gbKM233070.1, Zaire ebolavirus isolate Ebola virus H.sapiens-wt/SLE/2014/ManoRiver-G3770.2, partial genome     
   3 >gi667852562gbKM233042.1, Zaire ebolavirus isolate Ebola virus H.sapiens-wt/SLE/2014/ManoRiver-EM119, partial genome       ..........................................................................................................................................................................................G.....................................................................................................................................................................................................................................................................................................................................................................................................................A.......................................................................................................................................A.....................................................................................................................................................................................................................................................................................................................        4      3 ,      3      3       3:>gi667852562gbKM233042.1, Zaire ebolavirus isolate Ebola virus H.sapiens-wt/SLE/2014/ManoRiver-EM119, partial genome       
   4 >gi667853072gbKM233091.1, Zaire ebolavirus isolate Ebola virus H.sapiens-wt/SLE/2014/ManoRiver-G3817, partial genome       ................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................A.............................................................................................................................................................................................................................................................................................................................................................................................................................................................        7      1 ,      4      1       4:>gi667853072gbKM233091.1, Zaire ebolavirus isolate Ebola virus H.sapiens-wt/SLE/2014/ManoRiver-G3817, partial genome       
   5 >gi667853259gbKM233109.1, Zaire ebolavirus isolate Ebola virus H.sapiens-wt/SLE/2014/ManoRiver-G3846, partial genome       ................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................A.............................................................................................................................................................................................................................................................................................................................................................................................................................................................        3      1 ,      3      1       5:>gi667853259gbKM233109.1, Zaire ebolavirus isolate Ebola virus H.sapiens-wt/SLE/2014/ManoRiver-G3846, partial genome       
   6 >gi667852788gbKM233064.1, Zaire ebolavirus isolate Ebola virus H.sapiens-wt/SLE/2014/ManoRiver-G3765.2, partial genome     ................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................A.........................................................................................................................................................................................................................................................................................................................................................................................................................................................----       10      5 ,      1      1       6:>gi667852788gbKM233064.1, Zaire ebolavirus isolate Ebola virus H.sapiens-wt/SLE/2014/ManoRiver-G3765.2, partial genome     
   7 >gi667852696gbKM233055.1, Zaire ebolavirus isolate Ebola virus H.sapiens-wt/SLE/2014/ManoRiver-G3734.1, partial genome     ..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................        3      0 ,      0      0       7:>gi667852696gbKM233055.1, Zaire ebolavirus isolate Ebola virus H.sapiens-wt/SLE/2014/ManoRiver-G3734.1, partial genome     
   8 >gi667853343gbKM233117.1, Zaire ebolavirus isolate Ebola virus H.sapiens-wt/SLE/2014/ManoRiver-NM042.2, partial genome     --..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................A.......................................................................................................................................................................................................................................................................................................................................................................................................................................................------       14      9 ,      1      1       8:>gi667853343gbKM233117.1, Zaire ebolavirus isolate Ebola virus H.sapiens-wt/SLE/2014/ManoRiver-NM042.2, partial genome     
   9 >gi667852656gbKM233051.1, Zaire ebolavirus isolate Ebola virus H.sapiens-wt/SLE/2014/ManoRiver-G3713.3, partial genome     ................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................A..............................................................................................................................................................................................T..............................................................................................................................................................................................................................................................        2      2 ,      2      2       9:>gi667852656gbKM233051.1, Zaire ebolavirus isolate Ebola virus H.sapiens-wt/SLE/2014/ManoRiver-G3713.3, partial genome     
  10 >gi667852635gbKM233049.1, Zaire ebolavirus isolate Ebola virus H.sapiens-wt/SLE/2014/ManoRiver-G3707, partial genome       ................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................A.............................................................................................................................................................................................................................................................................................................................................................................................................................................................        1      1 ,      1      1      10:>gi667852635gbKM233049.1, Zaire ebolavirus isolate Ebola virus H.sapiens-wt/SLE/2014/ManoRiver-G3707, partial genome       
  11 >gi667852489gbKM233035.1, Zaire ebolavirus isolate Ebola virus H.sapiens-wt/SLE/2014/ManoRiver-EM104, partial genome       ................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................A.............................................................................................................................................................................................................................................................................................................................................................................................................................................................        3      1 ,      2      1      11:>gi667852489gbKM233035.1, Zaire ebolavirus isolate Ebola virus H.sapiens-wt/SLE/2014/ManoRiver-EM104, partial genome       
  12 >gi667853353gbKM233118.1, Zaire ebolavirus isolate Ebola virus H.sapiens-wt/SLE/2014/ManoRiver-NM042.3, partial genome     ................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................A...............................................................................................................................................................................................................................................................................................................................................................................................................................................--------------       20     15 ,      1      1      12:>gi667853353gbKM233118.1, Zaire ebolavirus isolate Ebola virus H.sapiens-wt/SLE/2014/ManoRiver-NM042.3, partial genome     
  13 >gi667852726gbKM233058.1, Zaire ebolavirus isolate Ebola virus H.sapiens-wt/SLE/2014/ManoRiver-G3750.1, partial genome     ................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................A....C........................................................................................................................................................................................................................................................................................................................................................................................................................................................        5      2 ,      2      2      13:>gi667852726gbKM233058.1, Zaire ebolavirus isolate Ebola virus H.sapiens-wt/SLE/2014/ManoRiver-G3750.1, partial genome     
  14 >gi667852736gbKM233059.1, Zaire ebolavirus isolate Ebola virus H.sapiens-wt/SLE/2014/ManoRiver-G3750.2, partial genome     ................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................A....C.....................................................................................................................................................................................................................................................................................................................................................................................................................................................---        9      5 ,      2      2      14:>gi667852736gbKM233059.1, Zaire ebolavirus isolate Ebola virus H.sapiens-wt/SLE/2014/ManoRiver-G3750.2, partial genome     
  15 >gi667852706gbKM233056.1, Zaire ebolavirus isolate Ebola virus H.sapiens-wt/SLE/2014/ManoRiver-G3735.1, partial genome     ................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................A.............................................................................................................................................................................................................................................................................................................................................................................................................................................................        1      1 ,      1      1      15:>gi667852706gbKM233056.1, Zaire ebolavirus isolate Ebola virus H.sapiens-wt/SLE/2014/ManoRiver-G3735.1, partial genome     
  16 >gi667853311gbKM233114.1, Zaire ebolavirus isolate Ebola virus H.sapiens-wt/SLE/2014/ManoRiver-G3856.3, partial genome     ................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................A.........................................................................................................................................C...................................................................................................................................................................................................................................................................................................................        2      2 ,      2      2      16:>gi667853311gbKM233114.1, Zaire ebolavirus isolate Ebola virus H.sapiens-wt/SLE/2014/ManoRiver-G3856.3, partial genome     
  17 >gi667853301gbKM233113.1, Zaire ebolavirus isolate Ebola virus H.sapiens-wt/SLE/2014/ManoRiver-G3856.1, partial genome     ................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................A.........................................................................................................................................C...................................................................................................................................................................................................................................................................................................................        2      2 ,      2      2      17:>gi667853301gbKM233113.1, Zaire ebolavirus isolate Ebola virus H.sapiens-wt/SLE/2014/ManoRiver-G3856.1, partial genome     
  18 >gi667853280gbKM233111.1, Zaire ebolavirus isolate Ebola virus H.sapiens-wt/SLE/2014/ManoRiver-G3850, partial genome       ................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................A.........................................................................................................................................................................................................................................................................................................................................................................................................................................................----       10      5 ,      1      1      18:>gi667853280gbKM233111.1, Zaire ebolavirus isolate Ebola virus H.sapiens-wt/SLE/2014/ManoRiver-G3850, partial genome       
  19 >gi667852967gbKM233081.1, Zaire ebolavirus isolate Ebola virus H.sapiens-wt/SLE/2014/ManoRiver-G3800, partial genome       ..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................        1      0 ,      0      0      19:>gi667852967gbKM233081.1, Zaire ebolavirus isolate Ebola virus H.sapiens-wt/SLE/2014/ManoRiver-G3800, partial genome       
  20 >gi667852988gbKM233083.1, Zaire ebolavirus isolate Ebola virus H.sapiens-wt/SLE/2014/ManoRiver-G3805.2, partial genome     ................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................A............................................................................................................................................................................................................................................................................................................................................................................................................................................................-        5      2 ,      1      1      20:>gi667852988gbKM233083.1, Zaire ebolavirus isolate Ebola virus H.sapiens-wt/SLE/2014/ManoRiver-G3805.2, partial genome     
  21 >gi667853020gbKM233086.1, Zaire ebolavirus isolate Ebola virus H.sapiens-wt/SLE/2014/ManoRiver-G3809, partial genome       ..............................................................................................................................................................................................................................................................................A.................................................................................................................................................................................................................................................................................................................................A............................................................................................................................................................................................................................................................................................................................................................................................................................................................-        6      3 ,      2      2      21:>gi667853020gbKM233086.1, Zaire ebolavirus isolate Ebola virus H.sapiens-wt/SLE/2014/ManoRiver-G3809, partial genome       
  22 >gi667853062gbKM233090.1, Zaire ebolavirus isolate Ebola virus H.sapiens-wt/SLE/2014/ManoRiver-G3816, partial genome       ..............................................................................................................................................................................................................................................................................A.................................................................................................................................................................................................................................................................................................................................A.............................................................................................................................................................................................................................................................................................................................................................................................................................................................        5      2 ,      2      2      22:>gi667853062gbKM233090.1, Zaire ebolavirus isolate Ebola virus H.sapiens-wt/SLE/2014/ManoRiver-G3816, partial genome       
  23 >gi667853228gbKM233106.1, Zaire ebolavirus isolate Ebola virus H.sapiens-wt/SLE/2014/ManoRiver-G3840, partial genome       ................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................A.............................................................................................................................................................................................................................................................................................................................................................................................................................................................        1      1 ,      1      1      23:>gi667853228gbKM233106.1, Zaire ebolavirus isolate Ebola virus H.sapiens-wt/SLE/2014/ManoRiver-G3840, partial genome       
  24 >gi667853113gbKM233095.1, Zaire ebolavirus isolate Ebola virus H.sapiens-wt/SLE/2014/ManoRiver-G3821, partial genome       ..............................................................................................................................................................................................................................................................................A.................................................................................................................................................................................................................................................................................................................................A.............................................................................................................................................................................................................................................................................................................................................................................................................................................................        5      2 ,      2      2      24:>gi667853113gbKM233095.1, Zaire ebolavirus isolate Ebola virus H.sapiens-wt/SLE/2014/ManoRiver-G3821, partial genome       
  25 >gi667853124gbKM233096.1, Zaire ebolavirus isolate Ebola virus H.sapiens-wt/SLE/2014/ManoRiver-G3822, partial genome       ..............................................................................................................................................................................................................................................................................A.................................................................................................................................................................................................................................................................................................................................A.............................................................................................................................................................................................................................................................................................................................................................................................................................................................        2      2 ,      2      2      25:>gi667853124gbKM233096.1, Zaire ebolavirus isolate Ebola virus H.sapiens-wt/SLE/2014/ManoRiver-G3822, partial genome       
  26 >gi667853332gbKM233116.1, Zaire ebolavirus isolate Ebola virus H.sapiens-wt/SLE/2014/ManoRiver-NM042.1, partial genome     ................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................A.............................................................................................................................................................................................................................................................................................................................................................................................................................................................        2      1 ,      1      1      26:>gi667853332gbKM233116.1, Zaire ebolavirus isolate Ebola virus H.sapiens-wt/SLE/2014/ManoRiver-NM042.1, partial genome     
  27 >gi667852625gbKM233048.1, Zaire ebolavirus isolate Ebola virus H.sapiens-wt/SLE/2014/ManoRiver-EM124.4, partial genome     ................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................A................................................................................................................................................................................C...........................................................................................................................................................................................................................................................................-        6      3 ,      2      2      27:>gi667852625gbKM233048.1, Zaire ebolavirus isolate Ebola virus H.sapiens-wt/SLE/2014/ManoRiver-EM124.4, partial genome     
  28 >gi667852614gbKM233047.1, Zaire ebolavirus isolate Ebola virus H.sapiens-wt/SLE/2014/ManoRiver-EM124.3, partial genome     ................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................A.............................................................................................................................................................................................................................................................................................................................................................................................................................................................        2      1 ,      1      1      28:>gi667852614gbKM233047.1, Zaire ebolavirus isolate Ebola virus H.sapiens-wt/SLE/2014/ManoRiver-EM124.3, partial genome     
  29 >gi667852552gbKM233041.1, Zaire ebolavirus isolate Ebola virus H.sapiens-wt/SLE/2014/ManoRiver-EM115, partial genome       ................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................A.............................................................................................................................................................................................................................................................................................................................................................................................................................................................        4      1 ,      1      1      29:>gi667852552gbKM233041.1, Zaire ebolavirus isolate Ebola virus H.sapiens-wt/SLE/2014/ManoRiver-EM115, partial genome       
  30 >gi661348705gbKM034560.1, Zaire ebolavirus isolate Ebola virus H.sapiens-wt/SLE/2014/ManoRiver-G3682.1, partial genome     ..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................        0      0 ,      0      0      30:>gi661348705gbKM034560.1, Zaire ebolavirus isolate Ebola virus H.sapiens-wt/SLE/2014/ManoRiver-G3682.1, partial genome     
  31 >gi667852500gbKM233036.1, Zaire ebolavirus isolate Ebola virus H.sapiens-wt/SLE/2014/ManoRiver-EM106, partial genome       ................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................A.............................................................................................................................................................................................................................................................................................................................................................................................................................................................        4      1 ,      1      1      31:>gi667852500gbKM233036.1, Zaire ebolavirus isolate Ebola virus H.sapiens-wt/SLE/2014/ManoRiver-EM106, partial genome       
  32 >gi667852510gbKM233037.1, Zaire ebolavirus isolate Ebola virus H.sapiens-wt/SLE/2014/ManoRiver-EM110, partial genome       ................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................A.............................................................................................................................................................................................................................................................................................................................................................................................................................................................        2      1 ,      1      1      32:>gi667852510gbKM233037.1, Zaire ebolavirus isolate Ebola virus H.sapiens-wt/SLE/2014/ManoRiver-EM110, partial genome       
  33 >gi667852604gbKM233046.1, Zaire ebolavirus isolate Ebola virus H.sapiens-wt/SLE/2014/ManoRiver-EM124.2, partial genome     ................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................A.............................................................................................................................................................................................................................................................................................................................................................................................................................................................        4      1 ,      1      1      33:>gi667852604gbKM233046.1, Zaire ebolavirus isolate Ebola virus H.sapiens-wt/SLE/2014/ManoRiver-EM124.2, partial genome     
  34 >gi667852676gbKM233053.1, Zaire ebolavirus isolate Ebola virus H.sapiens-wt/SLE/2014/ManoRiver-G3724, partial genome       ................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................A.............................................................................................................................................................................................................................................................................................................................................................................................................................................................        2      1 ,      2      1      34:>gi667852676gbKM233053.1, Zaire ebolavirus isolate Ebola virus H.sapiens-wt/SLE/2014/ManoRiver-G3724, partial genome       
  35 >gi667852757gbKM233061.1, Zaire ebolavirus isolate Ebola virus H.sapiens-wt/SLE/2014/ManoRiver-G3752, partial genome       ................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................A................................................................................................................................................................................C............................................................................................................................................................................................................................................................................        5      2 ,      2      2      35:>gi667852757gbKM233061.1, Zaire ebolavirus isolate Ebola virus H.sapiens-wt/SLE/2014/ManoRiver-G3752, partial genome       
  36 >gi667853322gbKM233115.1, Zaire ebolavirus isolate Ebola virus H.sapiens-wt/SLE/2014/ManoRiver-G3857, partial genome       ................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................A................................................................................................................................................................................C...........................................................................................................................................................................................................................................................................-        6      3 ,      2      2      36:>gi667853322gbKM233115.1, Zaire ebolavirus isolate Ebola virus H.sapiens-wt/SLE/2014/ManoRiver-G3857, partial genome       
  37 >gi667852861gbKM233071.1, Zaire ebolavirus isolate Ebola virus H.sapiens-wt/SLE/2014/ManoRiver-G3771, partial genome       ................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................A.............................................................................................................................................................................................................................................................................................................................................................................................................................................................        2      1 ,      1      1      37:>gi667852861gbKM233071.1, Zaire ebolavirus isolate Ebola virus H.sapiens-wt/SLE/2014/ManoRiver-G3771, partial genome       
  38 >gi667852882gbKM233073.1, Zaire ebolavirus isolate Ebola virus H.sapiens-wt/SLE/2014/ManoRiver-G3786, partial genome       ..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................        1      0 ,      0      0      38:>gi667852882gbKM233073.1, Zaire ebolavirus isolate Ebola virus H.sapiens-wt/SLE/2014/ManoRiver-G3786, partial genome       
  39 >gi667852924gbKM233077.1, Zaire ebolavirus isolate Ebola virus H.sapiens-wt/SLE/2014/ManoRiver-G3795, partial genome       ..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................        2      0 ,      0      0      39:>gi667852924gbKM233077.1, Zaire ebolavirus isolate Ebola virus H.sapiens-wt/SLE/2014/ManoRiver-G3795, partial genome       
  40 >gi667852934gbKM233078.1, Zaire ebolavirus isolate Ebola virus H.sapiens-wt/SLE/2014/ManoRiver-G3796, partial genome       ..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................        1      0 ,      0      0      40:>gi667852934gbKM233078.1, Zaire ebolavirus isolate Ebola virus H.sapiens-wt/SLE/2014/ManoRiver-G3796, partial genome       
  41 >gi667852957gbKM233080.1, Zaire ebolavirus isolate Ebola virus H.sapiens-wt/SLE/2014/ManoRiver-G3799, partial genome       ..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................        1      0 ,      1      0      41:>gi667852957gbKM233080.1, Zaire ebolavirus isolate Ebola virus H.sapiens-wt/SLE/2014/ManoRiver-G3799, partial genome       
  42 >gi667852999gbKM233084.1, Zaire ebolavirus isolate Ebola virus H.sapiens-wt/SLE/2014/ManoRiver-G3807, partial genome       ..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................        1      0 ,      0      0      42:>gi667852999gbKM233084.1, Zaire ebolavirus isolate Ebola virus H.sapiens-wt/SLE/2014/ManoRiver-G3807, partial genome       
  43 >gi667852903gbKM233075.1, Zaire ebolavirus isolate Ebola virus H.sapiens-wt/SLE/2014/ManoRiver-G3788, partial genome       ..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................        1      0 ,      1      0      43:>gi667852903gbKM233075.1, Zaire ebolavirus isolate Ebola virus H.sapiens-wt/SLE/2014/ManoRiver-G3788, partial genome       
  44 >gi667853239gbKM233107.1, Zaire ebolavirus isolate Ebola virus H.sapiens-wt/SLE/2014/ManoRiver-G3841, partial genome       ..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................        3      0 ,      0      0      44:>gi667853239gbKM233107.1, Zaire ebolavirus isolate Ebola virus H.sapiens-wt/SLE/2014/ManoRiver-G3841, partial genome       
  45 >gi667853103gbKM233094.1, Zaire ebolavirus isolate Ebola virus H.sapiens-wt/SLE/2014/ManoRiver-G3820, partial genome       ..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................        1      0 ,      0      0      45:>gi667853103gbKM233094.1, Zaire ebolavirus isolate Ebola virus H.sapiens-wt/SLE/2014/ManoRiver-G3820, partial genome       
  46 >gi667853218gbKM233105.1, Zaire ebolavirus isolate Ebola virus H.sapiens-wt/SLE/2014/ManoRiver-G3838, partial genome       ..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................        1      0 ,      0      0      46:>gi667853218gbKM233105.1, Zaire ebolavirus isolate Ebola virus H.sapiens-wt/SLE/2014/ManoRiver-G3838, partial genome       
  47 >gi667853134gbKM233097.1, Zaire ebolavirus isolate Ebola virus H.sapiens-wt/SLE/2014/ManoRiver-G3823, partial genome       ..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................        1      0 ,      1      0      47:>gi667853134gbKM233097.1, Zaire ebolavirus isolate Ebola virus H.sapiens-wt/SLE/2014/ManoRiver-G3823, partial genome       
  48 >gi667853249gbKM233108.1, Zaire ebolavirus isolate Ebola virus H.sapiens-wt/SLE/2014/ManoRiver-G3845, partial genome       ................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................A.............................................................................................................................................................................................................................................................................................................................................................................................................................................................        2      1 ,      1      1      48:>gi667853249gbKM233108.1, Zaire ebolavirus isolate Ebola virus H.sapiens-wt/SLE/2014/ManoRiver-G3845, partial genome       
  49 >gi667853270gbKM233110.1, Zaire ebolavirus isolate Ebola virus H.sapiens-wt/SLE/2014/ManoRiver-G3848, partial genome       ................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................A................................................................................................................................................................................C............................................................................................................................................................................................................................................................................        2      2 ,      2      2      49:>gi667853270gbKM233110.1, Zaire ebolavirus isolate Ebola virus H.sapiens-wt/SLE/2014/ManoRiver-G3848, partial genome       
  50 >gi667853291gbKM233112.1, Zaire ebolavirus isolate Ebola virus H.sapiens-wt/SLE/2014/ManoRiver-G3851, partial genome       ................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................A................................................................................................................................................................................C............................................................................................................................................................................................................................................................................        3      2 ,      2      2      50:>gi667853291gbKM233112.1, Zaire ebolavirus isolate Ebola virus H.sapiens-wt/SLE/2014/ManoRiver-G3851, partial genome       
  51 >gi661348675gbKM034557.1, Zaire ebolavirus isolate Ebola virus H.sapiens-wt/SLE/2014/ManoRiver-G3677.2, partial genome     ..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................        0      0 ,      0      0      51:>gi661348675gbKM034557.1, Zaire ebolavirus isolate Ebola virus H.sapiens-wt/SLE/2014/ManoRiver-G3677.2, partial genome     
  52 >gi661348665gbKM034556.1, Zaire ebolavirus isolate Ebola virus H.sapiens-wt/SLE/2014/ManoRiver-G3677.1, partial genome     ..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................        0      0 ,      0      0      52:>gi661348665gbKM034556.1, Zaire ebolavirus isolate Ebola virus H.sapiens-wt/SLE/2014/ManoRiver-G3677.1, partial genome     
  53 >gi667852582gbKM233044.1, Zaire ebolavirus isolate Ebola virus H.sapiens-wt/SLE/2014/ManoRiver-EM121, partial genome       ..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................        2      0 ,      1      0      53:>gi667852582gbKM233044.1, Zaire ebolavirus isolate Ebola virus H.sapiens-wt/SLE/2014/ManoRiver-EM121, partial genome       
  54 >gi667853009gbKM233085.1, Zaire ebolavirus isolate Ebola virus H.sapiens-wt/SLE/2014/ManoRiver-G3808, partial genome       ..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................        3      0 ,      0      0      54:>gi667853009gbKM233085.1, Zaire ebolavirus isolate Ebola virus H.sapiens-wt/SLE/2014/ManoRiver-G3808, partial genome       
  55 >gi661348625gbKM034552.1, Zaire ebolavirus isolate Ebola virus H.sapiens-wt/SLE/2014/ManoRiver-EM098, partial genome       .............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................-        4      1 ,      0      0      55:>gi661348625gbKM034552.1, Zaire ebolavirus isolate Ebola virus H.sapiens-wt/SLE/2014/ManoRiver-EM098, partial genome       
  56 >gi667852542gbKM233040.1, Zaire ebolavirus isolate Ebola virus H.sapiens-wt/SLE/2014/ManoRiver-EM113, partial genome       ................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................A.............................................................................................................................................................................................................................................................................................................................................................................................................................................................        2      1 ,      1      1      56:>gi667852542gbKM233040.1, Zaire ebolavirus isolate Ebola virus H.sapiens-wt/SLE/2014/ManoRiver-EM113, partial genome       
  57 >gi667852521gbKM233038.1, Zaire ebolavirus isolate Ebola virus H.sapiens-wt/SLE/2014/ManoRiver-EM111, partial genome       ................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................A.............................................................................................................................................................................................................................................................................................................................................................................................................................................................        2      1 ,      1      1      57:>gi667852521gbKM233038.1, Zaire ebolavirus isolate Ebola virus H.sapiens-wt/SLE/2014/ManoRiver-EM111, partial genome       
  58 >gi667852716gbKM233057.1, Zaire ebolavirus isolate Ebola virus H.sapiens-wt/SLE/2014/ManoRiver-G3735.2, partial genome     ................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................A.............................................................................................................................................................................................................................................................................................................................................................................................................................................................        1      1 ,      1      1      58:>gi667852716gbKM233057.1, Zaire ebolavirus isolate Ebola virus H.sapiens-wt/SLE/2014/ManoRiver-G3735.2, partial genome     
  59 >gi667852945gbKM233079.1, Zaire ebolavirus isolate Ebola virus H.sapiens-wt/SLE/2014/ManoRiver-G3798, partial genome       ................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................A.............................................................................................................................................................................................................................................................................................................................................................................................................................................................        4      1 ,      1      1      59:>gi667852945gbKM233079.1, Zaire ebolavirus isolate Ebola virus H.sapiens-wt/SLE/2014/ManoRiver-G3798, partial genome       
  60 >gi667852767gbKM233062.1, Zaire ebolavirus isolate Ebola virus H.sapiens-wt/SLE/2014/ManoRiver-G3758, partial genome       ..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................        0      0 ,      0      0      60:>gi667852767gbKM233062.1, Zaire ebolavirus isolate Ebola virus H.sapiens-wt/SLE/2014/ManoRiver-G3758, partial genome       
  61 >gi667852778gbKM233063.1, Zaire ebolavirus isolate Ebola virus H.sapiens-wt/SLE/2014/ManoRiver-G3764, partial genome       ................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................A.............................................................................................................................................................................................................................................................................................................................................................................................................................................................        1      1 ,      1      1      61:>gi667852778gbKM233063.1, Zaire ebolavirus isolate Ebola virus H.sapiens-wt/SLE/2014/ManoRiver-G3764, partial genome       
  62 >gi667852572gbKM233043.1, Zaire ebolavirus isolate Ebola virus H.sapiens-wt/SLE/2014/ManoRiver-EM120, partial genome       ..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................        3      0 ,      1      0      62:>gi667852572gbKM233043.1, Zaire ebolavirus isolate Ebola virus H.sapiens-wt/SLE/2014/ManoRiver-EM120, partial genome       
  63 >gi667853051gbKM233089.1, Zaire ebolavirus isolate Ebola virus H.sapiens-wt/SLE/2014/ManoRiver-G3814, partial genome       ................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................A.............................................................................................................................................................................................................................................................................................................................................................................................................................................................        3      1 ,      1      1      63:>gi667853051gbKM233089.1, Zaire ebolavirus isolate Ebola virus H.sapiens-wt/SLE/2014/ManoRiver-G3814, partial genome       
  64 >gi667853166gbKM233100.1, Zaire ebolavirus isolate Ebola virus H.sapiens-wt/SLE/2014/ManoRiver-G3826, partial genome       ......................................................C.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................A.............................................................................................................................................................................................................................................................................................................................................................................................................................................................        2      2 ,      2      2      64:>gi667853166gbKM233100.1, Zaire ebolavirus isolate Ebola virus H.sapiens-wt/SLE/2014/ManoRiver-G3826, partial genome       
  65 >gi667853093gbKM233093.1, Zaire ebolavirus isolate Ebola virus H.sapiens-wt/SLE/2014/ManoRiver-G3819, partial genome       ................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................A.............................................................................................................................................................................................................................................................................................................................................................................................................................................................        5      1 ,      2      1      65:>gi667853093gbKM233093.1, Zaire ebolavirus isolate Ebola virus H.sapiens-wt/SLE/2014/ManoRiver-G3819, partial genome       
  66 >gi667852914gbKM233076.1, Zaire ebolavirus isolate Ebola virus H.sapiens-wt/SLE/2014/ManoRiver-G3789.1, partial genome     ................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................A.........................................................................................................................................................................................................................................................................................................................................................................................................................................................----        9      5 ,      1      1      66:>gi667852914gbKM233076.1, Zaire ebolavirus isolate Ebola virus H.sapiens-wt/SLE/2014/ManoRiver-G3789.1, partial genome     
  67 >gi667852872gbKM233072.1, Zaire ebolavirus isolate Ebola virus H.sapiens-wt/SLE/2014/ManoRiver-G3782, partial genome       ..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................        0      0 ,      0      0      67:>gi667852872gbKM233072.1, Zaire ebolavirus isolate Ebola virus H.sapiens-wt/SLE/2014/ManoRiver-G3782, partial genome       
  68 >gi667852686gbKM233054.1, Zaire ebolavirus isolate Ebola virus H.sapiens-wt/SLE/2014/ManoRiver-G3729, partial genome       ..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................        0      0 ,      0      0      68:>gi667852686gbKM233054.1, Zaire ebolavirus isolate Ebola virus H.sapiens-wt/SLE/2014/ManoRiver-G3729, partial genome       
  69 >gi667852747gbKM233060.1, Zaire ebolavirus isolate Ebola virus H.sapiens-wt/SLE/2014/ManoRiver-G3750.3, partial genome     ................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................A........................................................................................................................................................................................................................................................................................................................................................................................................................................................-----       11      6 ,      1      1      69:>gi667852747gbKM233060.1, Zaire ebolavirus isolate Ebola virus H.sapiens-wt/SLE/2014/ManoRiver-G3750.3, partial genome     
  70 >gi667852592gbKM233045.1, Zaire ebolavirus isolate Ebola virus H.sapiens-wt/SLE/2014/ManoRiver-EM124.1, partial genome     ................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................A.............................................................................................................................................................................................................................................................................................................................................................................................................................................................        3      1 ,      1      1      70:>gi667852592gbKM233045.1, Zaire ebolavirus isolate Ebola virus H.sapiens-wt/SLE/2014/ManoRiver-EM124.1, partial genome     
  71 >gi667852666gbKM233052.1, Zaire ebolavirus isolate Ebola virus H.sapiens-wt/SLE/2014/ManoRiver-G3713.4, partial genome     ................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................A..............................................................................................................................................................................................T..............................................................................................................................................................................................................................................................        2      2 ,      2      2      71:>gi667852666gbKM233052.1, Zaire ebolavirus isolate Ebola virus H.sapiens-wt/SLE/2014/ManoRiver-G3713.4, partial genome     
  72 >gi667852646gbKM233050.1, Zaire ebolavirus isolate Ebola virus H.sapiens-wt/SLE/2014/ManoRiver-G3713.2, partial genome     ................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................A..............................................................................................................................................................................................T..............................................................................................................................................................................................................................................................        2      2 ,      2      2      72:>gi667852646gbKM233050.1, Zaire ebolavirus isolate Ebola virus H.sapiens-wt/SLE/2014/ManoRiver-G3713.2, partial genome     
  73 >gi667852978gbKM233082.1, Zaire ebolavirus isolate Ebola virus H.sapiens-wt/SLE/2014/ManoRiver-G3805.1, partial genome     ................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................A............................................................................................................................................................................................................................................................................................................................................................................................................................................................-        5      2 ,      1      1      73:>gi667852978gbKM233082.1, Zaire ebolavirus isolate Ebola virus H.sapiens-wt/SLE/2014/ManoRiver-G3805.1, partial genome     
  74 >gi667852531gbKM233039.1, Zaire ebolavirus isolate Ebola virus H.sapiens-wt/SLE/2014/ManoRiver-EM112, partial genome       ................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................A.............................................................................................................................................................................................................................................................................................................................................................................................................................................................        1      1 ,      1      1      74:>gi667852531gbKM233039.1, Zaire ebolavirus isolate Ebola virus H.sapiens-wt/SLE/2014/ManoRiver-EM112, partial genome       
  75 >gi667853176gbKM233101.1, Zaire ebolavirus isolate Ebola virus H.sapiens-wt/SLE/2014/ManoRiver-G3827, partial genome       ......................................................C.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................A.............................................................................................................................................................................................................................................................................................................................................................................................................................................................        5      2 ,      2      2      75:>gi667853176gbKM233101.1, Zaire ebolavirus isolate Ebola virus H.sapiens-wt/SLE/2014/ManoRiver-G3827, partial genome       
  76 >gi667853207gbKM233104.1, Zaire ebolavirus isolate Ebola virus H.sapiens-wt/SLE/2014/ManoRiver-G3834, partial genome       ................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................A................................................................................................................................................................................C............................................................................................................................................................................................................................................................................        4      2 ,      2      2      76:>gi667853207gbKM233104.1, Zaire ebolavirus isolate Ebola virus H.sapiens-wt/SLE/2014/ManoRiver-G3834, partial genome       
  77 >gi667853145gbKM233098.1, Zaire ebolavirus isolate Ebola virus H.sapiens-wt/SLE/2014/ManoRiver-G3825.1, partial genome     ................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................A................................................................................................................................................................................C............................................................................................................................................................................................................................................................................        2      2 ,      2      2      77:>gi667853145gbKM233098.1, Zaire ebolavirus isolate Ebola virus H.sapiens-wt/SLE/2014/ManoRiver-G3825.1, partial genome     
  78 >gi667853186gbKM233102.1, Zaire ebolavirus isolate Ebola virus H.sapiens-wt/SLE/2014/ManoRiver-G3829, partial genome       ................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................A................................................................................................................................................................................C............................................................................................................................................................................................................................................................................        3      2 ,      3      2      78:>gi667853186gbKM233102.1, Zaire ebolavirus isolate Ebola virus H.sapiens-wt/SLE/2014/ManoRiver-G3829, partial genome       
  79 >gi667853155gbKM233099.1, Zaire ebolavirus isolate Ebola virus H.sapiens-wt/SLE/2014/ManoRiver-G3825.2, partial genome     ................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................A................................................................................................................................................................................C............................................................................................................................................................................................................................................................................        2      2 ,      2      2      79:>gi667853155gbKM233099.1, Zaire ebolavirus isolate Ebola virus H.sapiens-wt/SLE/2014/ManoRiver-G3825.2, partial genome     
  80 >gi661348635gbKM034553.1, Zaire ebolavirus isolate Ebola virus H.sapiens-wt/SLE/2014/ManoRiver-G3670.1, partial genome     ..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................        2      0 ,      2      0      80:>gi661348635gbKM034553.1, Zaire ebolavirus isolate Ebola virus H.sapiens-wt/SLE/2014/ManoRiver-G3670.1, partial genome     
  81 >gi667853041gbKM233088.1, Zaire ebolavirus isolate Ebola virus H.sapiens-wt/SLE/2014/ManoRiver-G3810.2, partial genome     ............................................................................................................................................G..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................A..............................................................................................................................................................................................................................................................................................................................................................................................................        3      2 ,      2      2      81:>gi667853041gbKM233088.1, Zaire ebolavirus isolate Ebola virus H.sapiens-wt/SLE/2014/ManoRiver-G3810.2, partial genome     
  82 >gi667853030gbKM233087.1, Zaire ebolavirus isolate Ebola virus H.sapiens-wt/SLE/2014/ManoRiver-G3810.1, partial genome     ............................................................................................................................................G..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................A..............................................................................................................................................................................................................................................................................................................................................................................................................        5      2 ,      2      2      82:>gi667853030gbKM233087.1, Zaire ebolavirus isolate Ebola virus H.sapiens-wt/SLE/2014/ManoRiver-G3810.1, partial genome     
  83 >gi667853082gbKM233092.1, Zaire ebolavirus isolate Ebola virus H.sapiens-wt/SLE/2014/ManoRiver-G3818, partial genome       ................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................A.............................................................................................................................................................................................................................................................................................................................................................................................................................................................        3      1 ,      3      1      83:>gi667853082gbKM233092.1, Zaire ebolavirus isolate Ebola virus H.sapiens-wt/SLE/2014/ManoRiver-G3818, partial genome       
  84 >gi661348615gbKM034551.1, Zaire ebolavirus isolate Ebola virus H.sapiens-wt/SLE/2014/ManoRiver-EM096, partial genome       ........................................................................................................................................G.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................C...............................................        3      2 ,      2      2      84:>gi661348615gbKM034551.1, Zaire ebolavirus isolate Ebola virus H.sapiens-wt/SLE/2014/ManoRiver-EM096, partial genome       
  85 >gi661348685gbKM034558.1, Zaire ebolavirus isolate Ebola virus H.sapiens-wt/SLE/2014/ManoRiver-G3679.1, partial genome     ........................................................................................................................................G.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................C...............................................        4      2 ,      2      2      85:>gi661348685gbKM034558.1, Zaire ebolavirus isolate Ebola virus H.sapiens-wt/SLE/2014/ManoRiver-G3679.1, partial genome     
  86 >gi667852893gbKM233074.1, Zaire ebolavirus isolate Ebola virus H.sapiens-wt/SLE/2014/ManoRiver-G3787, partial genome       ..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................A.............................................................................................................................................................................A.................................................................................................................................................................................        5      2 ,      2      2      86:>gi667852893gbKM233074.1, Zaire ebolavirus isolate Ebola virus H.sapiens-wt/SLE/2014/ManoRiver-G3787, partial genome       
  87 >gi667853197gbKM233103.1, Zaire ebolavirus isolate Ebola virus H.sapiens-wt/SLE/2014/ManoRiver-G3831, partial genome       ..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................A.............................................................................................................................................................................A.................................................................................................................................................................................        2      2 ,      2      2      87:>gi667853197gbKM233103.1, Zaire ebolavirus isolate Ebola virus H.sapiens-wt/SLE/2014/ManoRiver-G3831, partial genome       
  88 >gi667852798gbKM233065.1, Zaire ebolavirus isolate Ebola virus H.sapiens-wt/SLE/2014/ManoRiver-G3769.1, partial genome     ..........................................................................................................................................................................................................................................................C.....................................C.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................        3      2 ,      2      2      88:>gi667852798gbKM233065.1, Zaire ebolavirus isolate Ebola virus H.sapiens-wt/SLE/2014/ManoRiver-G3769.1, partial genome     
  89 >gi667852830gbKM233068.1, Zaire ebolavirus isolate Ebola virus H.sapiens-wt/SLE/2014/ManoRiver-G3769.4, partial genome     ..........................................................................................................................................................................................................................................................C.....................................C.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................        3      2 ,      2      2      89:>gi667852830gbKM233068.1, Zaire ebolavirus isolate Ebola virus H.sapiens-wt/SLE/2014/ManoRiver-G3769.4, partial genome     
  90 >gi667852819gbKM233067.1, Zaire ebolavirus isolate Ebola virus H.sapiens-wt/SLE/2014/ManoRiver-G3769.3, partial genome     ..........................................................................................................................................................................................................................................................C.....................................C.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................        3      2 ,      2      2      90:>gi667852819gbKM233067.1, Zaire ebolavirus isolate Ebola virus H.sapiens-wt/SLE/2014/ManoRiver-G3769.3, partial genome     
  91 >gi667852809gbKM233066.1, Zaire ebolavirus isolate Ebola virus H.sapiens-wt/SLE/2014/ManoRiver-G3769.2, partial genome     ..........................................................................................................................................................................................................................................................C.....................................C.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................        5      2 ,      2      2      91:>gi667852809gbKM233066.1, Zaire ebolavirus isolate Ebola virus H.sapiens-wt/SLE/2014/ManoRiver-G3769.2, partial genome     
  92 >gi661348735gbKM034563.1, Zaire ebolavirus isolate Ebola virus H.sapiens-wt/SLE/2014/ManoRiver-G3687.1, partial genome     ---------.....................................C..................................................................................---------................................................................................................................................................................................................................................................................-------.....................................................................................................A....................................................................----.........................................................................................................................................................................................................................................................................................G.......................................................................T.................................................................................................-----.......       52     38 ,      5      4      92:>gi661348735gbKM034563.1, Zaire ebolavirus isolate Ebola virus H.sapiens-wt/SLE/2014/ManoRiver-G3687.1, partial genome     
  93 >gi661348655gbKM034555.1, Zaire ebolavirus isolate Ebola virus H.sapiens-wt/SLE/2014/ManoRiver-G3676.2, partial genome     ..............................................C.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................A.................................................................................................................................................................................................................................................................................................................................................................G.......................................................................T.............................................................................................................        4      4 ,      4      4      93:>gi661348655gbKM034555.1, Zaire ebolavirus isolate Ebola virus H.sapiens-wt/SLE/2014/ManoRiver-G3676.2, partial genome     
  94 >gi661348695gbKM034559.1, Zaire ebolavirus isolate Ebola virus H.sapiens-wt/SLE/2014/ManoRiver-G3680.1, partial genome     ..............................................C.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................A.................................................................................................................................................................................................................................................................................................................................................................G.......................................................................T.............................................................................................................        6      4 ,      5      4      94:>gi661348695gbKM034559.1, Zaire ebolavirus isolate Ebola virus H.sapiens-wt/SLE/2014/ManoRiver-G3680.1, partial genome     
  95 >gi661348605gbKM034550.1, Zaire ebolavirus isolate Ebola virus H.sapiens-wt/SLE/2014/ManoRiver-EM095, partial genome       ..............................................C.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................A....................................................................--...........................................................................................................................................................................................................................................................................................G.......................................................................T.............................................................................................................        7      6 ,      4      4      95:>gi661348605gbKM034550.1, Zaire ebolavirus isolate Ebola virus H.sapiens-wt/SLE/2014/ManoRiver-EM095, partial genome       
  96 >gi661348595gbKM034549.1, Zaire ebolavirus isolate H.sapiens-wt/SLE/2014/ManoRiver-EM095B, partial genome                  ..............................................C.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................A....................................................................--...........................................................................................................................................................................................................................................................................................G.......................................................................T............................................................................................................-       11      7 ,      4      4      96:>gi661348595gbKM034549.1, Zaire ebolavirus isolate H.sapiens-wt/SLE/2014/ManoRiver-EM095B, partial genome                  
  97 >gi661348645gbKM034554.1, Zaire ebolavirus isolate Ebola virus H.sapiens-wt/SLE/2014/ManoRiver-G3676.1, partial genome     ..............................................C.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................A.................................................................................................................................................................................................................................................................................................................................................................G.......................................................................T.............................................................................................................        4      4 ,      4      4      97:>gi661348645gbKM034554.1, Zaire ebolavirus isolate Ebola virus H.sapiens-wt/SLE/2014/ManoRiver-G3676.1, partial genome     
  98 >gi661348715gbKM034561.1, Zaire ebolavirus isolate Ebola virus H.sapiens-wt/SLE/2014/ManoRiver-G3683.1, partial genome     ..............................................C.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................A.................................................................................................................................................................................................................................................................................................................................................................G.......................................................................T.............................................................................................................        8      4 ,      5      4      98:>gi661348715gbKM034561.1, Zaire ebolavirus isolate Ebola virus H.sapiens-wt/SLE/2014/ManoRiver-G3683.1, partial genome     
  99 >gi661348725gbKM034562.1, Zaire ebolavirus isolate Ebola virus H.sapiens-wt/SLE/2014/ManoRiver-G3686.1, partial genome     ..............................................C.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................A.................................................................................................................................................................................................................................................................................................................................................................G.......................................................................T.............................................................................................................        6      4 ,      6      4      99:>gi661348725gbKM034562.1, Zaire ebolavirus isolate Ebola virus H.sapiens-wt/SLE/2014/ManoRiver-G3686.1, partial genome     
 100 >gi674810549gbKJ660346.2, Zaire ebolavirus isolate H.sapiens-wt/GIN/2014/Kissidougou-C15, complete genome                  ..............................................C.............................................T...........................................................................................................................................................................................................................................................................C.............................................................................................................................................A.................................................................................................................................................................................................................................................................................................................................................................G.......................................................................T.............................................................................................................        6      6 ,      6      6     100:>gi674810549gbKJ660346.2, Zaire ebolavirus isolate H.sapiens-wt/GIN/2014/Kissidougou-C15, complete genome                  
 101 >gi674810554gbKJ660348.2, Zaire ebolavirus isolate H.sapiens-wt/GIN/2014/Gueckedou-C05, complete genome                    ..............................................C.............................................T...........................................................................................................................................................................................................................................................................C.............................................................................................................................................A....................................................................................................................................................................................................................................................................A.............................................................................T..............G.......................................................................T.............................................................................................................       11      8 ,     11      8     101:>gi674810554gbKJ660348.2, Zaire ebolavirus isolate H.sapiens-wt/GIN/2014/Gueckedou-C05, complete genome                    
 102 >gi674810552gbKJ660347.2, Zaire ebolavirus isolate H.sapiens-wt/GIN/2014/Gueckedou-C07, complete genome                    ..............................................C.............................................T...........................................................................................................................................................................................................................................................................C.............................................................................................................................................A....................................................................................................................................................................................................................................................................A.............................................................................T..............G.......................................................................T.............................................................................................................        9      8 ,      9      8     102:>gi674810552gbKJ660347.2, Zaire ebolavirus isolate H.sapiens-wt/GIN/2014/Gueckedou-C07, complete genome                    
 103 >gi436409299gbKC242787.1, Zaire ebolavirus isolate EBOV/H.sapiens-tc/COD/2007/23 Luebo, complete genome                    CT.GA.AA...TG.ACGGAAGC.T..T.T.TT.GA...AA..A...CAA..CT..C.CG..T..TCA.A.G.TA.ACC.GT....CGT....T.AGTA...T..A...G.T.C...C..TATGC.G.....C.T..G.CC.AG.C...ATC..ATG.AG..C....T...GAT...TTTTC...C..AT....TAG..AC......A..CG.GGCCTC.AGG..CCCG.CC..AG...AT.TGC...C...T..AA.T..TT...A...G.CAC.....A.T.T..CC..GAG.TG.T..G..TAAT.C....T.T...C.TGTA.AAAG..CGCT.....CT.GA.GA.CACC....ATCA.AG..TG..TC...C...A.A..GCA.CGG.....C.CTT.ACACA....ACCC......C.TCCC.C.A.CTC.G..T.GT.T.ACTTCT....CTC.T.GGT.G.T.....T.GA..GCGGGGCT.CG.T....TG..A.AAAGC.A.G...G.....GA...GCTG..ATAT..CG.C.TTC..A..TGAAG...ATGGAT.....CTAT..A.GG.CTA.....CC..TG..TG.....T...GC.A.G.T.TTA.T.CG..CG...AGT.AA.GTT.G..A.G.C...TG.C.G..TTA....AAAC....G..C.T.C..G..A.GAT.G.C..T.T.TCCA...GGTAA.TGA.T..GT.G..A.TCA.T.......G..T..A....GCA..CA.AT.T...C...CG.T..C..G.CC...TCA..G.AAT.TTC..AA.......TA.GGC...A...AC.TTGTTAA.T.C.TC.TGTCCC..G.....A.GT.A.AGGCC...T.ACAG...TGGT..GGA.A.AA..T.TT....A.CCA...CA.AA.TG.ATG..CAT.A..TTTTAA.A...T.CGAA.T.G..C.TGTTTCC...A.A..A.AAG.T.GA..G.CA.AT.TAA..CTGT.TAA.......G...TAC.G.T...AGC.T      539    539 ,    539    539     103:>gi436409299gbKC242787.1, Zaire ebolavirus isolate EBOV/H.sapiens-tc/COD/2007/23 Luebo, complete genome                    
 104 >gi436409309gbKC242788.1, Zaire ebolavirus isolate EBOV/H.sapiens-tc/COD/2007/43 Luebo, complete genome                    CT.GA.AA...TG.ACGGAAGC.T..T.T.TT.GA...AA..A...CAA..CT..C.CG..T..TCA.A.G.TA.ACC.GT....CGT....T.AGTA...T..A...G.T.C...C..TATGC.G.....C.T..G.CC.AG.C...ATC..ATG.AG..C....T...GAT...TTTTC...C..AT....TAG..AC......A..CG.GGCCTC.AGG..CCCG.CC..AG...AT.TGC...C...T..AA.T..TT...A...G.CAC.....A.T.T..CC..GAG.TG.T..G..TAAT.C....T.T...C.TGTA.AAAG..CGCT.....CT.GA.GA.CACC....ATCA.AG..TG..TC...C...A.A..GCA.CGG.....C.CTT.ACACA....ACCC......C.TCCC.C.A.CTC.G..T.GT.T.ACTTCT....CTC.T.GGT.G.T.....T.GA..GCGGGGCT.CG.T....TG..A.AAAGC.A.G...G.....GA...GCTG..ATAT..CG.C.TTC..A..TGAAG...ATGGAT.C...CTAT..A.GG.CTA.....CC..TG..TG.....T...GC.A.G.T.TTA.T.CG..CG...AGT.AA.GTT.G..A.G.C...TG.C.G..TTA....AAAC....G..C.T.C..G..A.GAT.G.C..T.T.TCCA...GGTAA.TGA.T..GT.G..A.TCA.T.......G..T..A....GCA..CA.AT.T...C...CG.T..C..G.CC...TCA..G.AAT.TTC..AA.......TA.GGC...A...AC.TTGTTAA.T.C.TC.TGTCCC..G.....A.GT.A.AGGCC...T.ACAG...TGGT..GGA.A.AA..T.TT....A.CCA...CA.AA.TG.ATG..CAT.A..TTTTAA.A...T.CGAA.T.G..C.TGTTTCC...A.A..A.AAG.T.GA..G.CA.AT.TAA..CTGT.TAA.......G...TAC.G.T...AGC.T      547    540 ,    547    540     104:>gi436409309gbKC242788.1, Zaire ebolavirus isolate EBOV/H.sapiens-tc/COD/2007/43 Luebo, complete genome                    
 105 >gi436409279gbKC242785.1, Zaire ebolavirus isolate EBOV/H.sapiens-tc/COD/2007/0 Luebo, complete genome                     CT.GA.AAG..TG.ACGGAAGC.T..T.T.TT.GA...AA..A...CAA..CT..C.CG..T..TCA.A.G.TA.ACC.GT....CGT....T.AGTA...T..A...G.T.C...C..TATGC.G.....C.T..G.CC.AG.C...ATC..ATG.AG..C....T...GAT...TTTTC...C..AT....TAG..AC......A..CG.GGCCTC.AGG..CCCG.CC..AG...AT.TGC...C...T..AA.T..T....A...G.CAC.....A.T.T..CC..GAG.TG.T..G..TAAT.C....T.T...C.TGTA.AAAG..CGCT.....CT.GA.GA.CACC....ATCA.AG..TG..TC...C...A.A..GCA.CGG.....C.CTT.ACACA....ACCC......C.TCCC.C.A.CTC.G..T.GT.T.ACTTCT....CTC.T.GGT.G.T.....T.GA..GCGGGGCT.CG.T....TG..A.AAAGC.A.G...G.....GA...GCTG..ATAT..CG.C.TTC..A..TGAAG...ATGGAT.....CTAT..A.GG.CTA.....CC..TG..TG.....T...GC.A.G.T.TTA.T.CG..CG...AGT.AA.GTT.G..A.G.C...TG.C.G..TTA....AAAC....G..C.T.C..G..A.GAT.G.C..T.T.TCCA...GGTAA.TGA.T..GT.G..A.TCA.T.......G..T..A....GCA..CA.AT.T...C...CG.T..C..G.CC...TCA..G.AAT.TTC..AA.......TA.GGC...A...AC.TTGTTAA.T.C.TC.TGTCCC..G.....A.GT.A.AGGCC...T.ACAG...TGGT..GGA.A.AA..T.TT....A.CCA...CA.AA.TG.ATG..CAT.A..TTTTAA.A...T.CGAA.T.G..C.TGTTTCC...A.A..A.AAG.T.GA..G.CA.AT.TAA..CTGT.TAA.......G...TAC.G.T...AGC.T      542    539 ,    542    539     105:>gi436409279gbKC242785.1, Zaire ebolavirus isolate EBOV/H.sapiens-tc/COD/2007/0 Luebo, complete genome                     
 106 >gi436409329gbKC242790.1, Zaire ebolavirus isolate EBOV/H.sapiens-tc/COD/2007/5 Luebo, complete genome                     CT.GA.AAG..TG.ACGGAAGC.T..T.T.TT.GA...AA..A...CAA..CT..C.CG..T..TCA.A.G.TA.ACC.GT....CGT....T.AGTA...T..A...G.T.C...C..TATGC.G.....C.T..G.CC.AG.C...ATC..ATG.AG..C...TT...GAT...TTTTC...C..AT....TAG..AC......A..CG.GGCCTC.AGG..CCCG.CC..AG...AT.TGCC..C...T..AA.T..T....A...G.CAC.....A.T.T..CC..GAG.TG.T..G..TAAT.C....T.T...C.TGTA.AAAG..CGCT.....CT.GA.GA.CACC....ATCA.AG..TG..TC...C...A.A..GCA.CGG.....C.CTT.ACACA....ACCC......C.TCCC.C.A.CTC.G..T.GT.T.ACTTCT....CTC.T.GGT.G.T.....T.GA..GCGGGGCT.CG.T....TG..A.AAAGC.A.G...G.....GA...GCTG..ATAT..CG.C.TTC..A..TGAAG...ATGGAT.....CTAT..A.GG.CTA.....CC..TG..TG.....T...GC.A.G.T.TTA.T.CG..CG...AGT.AA.GTT.G..A.G.C...TG.C.G..TTA....AAAC....G..C.T.C..G..A.GAT.G.C..T.T.TCCA...GGTAA.TGA.T..GT.G..A.TCA.T.......G..T..A....GCA..CA.AT.T...C...CG.T..C..G.CC...TCA..G.AAT.TTC..AA.......TA.GGC...A...AC.TTGTTAA.T.C.TC.TGTCCC..G.....A.GT.A.AGGCC...T.ACAG...TGGT..GGA.A.AA..T.TT....A.CCA...CA.AA.TG.ATG..CAT.A..TTTTAA.A...T.CGAA.T.G..C.TGTTTCC...A.A..A.AAG.T.GA..G.CA.AT.TAA..CTGT.TAA.......G...TAC.G.T...AGC.T      543    541 ,    543    541     106:>gi436409329gbKC242790.1, Zaire ebolavirus isolate EBOV/H.sapiens-tc/COD/2007/5 Luebo, complete genome                     
 107 >gi436409269gbKC242784.1, Zaire ebolavirus isolate EBOV/H.sapiens-tc/COD/2007/9 Luebo, complete genome                     CT.GA.AA...TG.ACGGAAGC.T..T.T.TT.GA...AA..A...CAA..CT..C.CG..T..TCA.A.G.TA.ACC.GT....CGT....T.AGTA...T..A...G.T.C...C..TATGC.G.....C.T..G.CC.AG.C...ATC..ATG.AG..C....T...GAT...TTTTC...C..AT....TAG..AC......A..CG.GGCCTC.AGG..CCCG.CC..AG...AT.TGC...C...T..AA.T..T....A...G.CAC.....A.T.T..CC..GAG.TG.T..G..TAAT.C....T.T...C.TGTA.AAAG..CGCT.....CT.GA.GA.CACC....ATCA.AG..TG..TC...C...A.A..GCA.CGG.....C.CTT.ACACA....ACCC......C.TCCC.C.A.CTC.G..T.GT.T.ACTTCT....CTC.T.GGT.G.T.....T.GA..GCGGGGCT.CG.T....TG..A.AAAGC.A.G...G.....GA...GCTG..ATAT..CG.C.TTC..A..TGAAG...ATGGAT.....CTAT..A.GG.CTA.....CC..TG..TG.....T...GC.A.G.T.TTA.T.CG..CG...AGT.AA.GTT.G..A.G.C...TG.C.G..TTA....AAAC....G..C.T.C..G..A.GAT.G.C..T.T.TCCA...GGTAA.TGA.T..GT.G..A.TCA.T.......G..T..A....GCA..CA.AT.T...C...CG.T..C..G.CC...TCA..G.AAT.TTC..AA.......TA.GGC...A...AC.TTGTTAA.T.C.TC.TGTCCC..G.....A.GT.A.AGGCC...T.ACAG...TGGT..GGA.A.AA..T.TT....A.CCA...CA.AA.TG.ATG..CAT.A..TTTTAA.A...TTCGAA.T.G..C.TGTTTCC...A.A..A.AAG.T.GA..G.CA.AT.TAA..CTGT.TAA.......G...TAC.G.T...AGC.T      542    539 ,    542    539     107:>gi436409269gbKC242784.1, Zaire ebolavirus isolate EBOV/H.sapiens-tc/COD/2007/9 Luebo, complete genome                     
 108 >gi355344232gbHQ613403.1, Zaire ebolavirus isolate M-M, partial genome                                                     CT.GA.AA...TG.ACGGAAGC.T..T.T.TT.GA...AA..A...CAA..CT..C.CG..T..TCA.A.G.TA.ACC.GT....CGT....T.AGTA...T..A...G.T.C...C..TATGC.G.....C.T..G.CC.AG.C...ATC..ATG.AG..C....T...GAT...TTTTC...C..AT....TAG..AC......A..CG.GGCCTC.AGG..CCCG.CC..AG...AT.TGC...C...T..AA.T..T....A...G.CAC.....A.T.T..CC..GAG.TG.T..G..TAAT.C....T.T...C.TGTA.AAAG..CGCT.....CT.GA.GA.CACC....ATCA.AG..TG..TC...C...A.A..GCA.CGG.....C.CTT.ACACA....ACCC......C.TCCC.C.A.CTC.G..T.GT.T.ACTTCT....CTC.T.GGT.G.T.....T.GA..GCGGGGCT.CG.T....TG..A.AAAGC.A.G...G.....GA...GCTG..ATAT..CG.C.TTC..A..TGAAG...ATGGAT.....CTAT..A.GG.CTA.....CC..TG..TG.....T...GC.A.G.T.TTA.T.CG..CG...AGT.AA.GTT.G..A.G.C...TG.C.G..TTA....AAAC....G..C.T.C..G..A.GAT.G.C..T.T.TCCA...GGTAA.TGA.T..GT.G..A.TCA.T.......G..T..A....GCA..CA.AT.T...C...CG.T..C..G.CC...TCA..G.AAT.TTC..AA.......TA.GGC...A...AC.TTGTTAA.T.C.TC.TGTCCC..G.....A.GT.A.AGGCC...T.ACAG...TGGT..GGA.A.AA..T.TT....A.CCA...CA.AA.TG.ATG..CAT.A..TTTTAA.A...TTCGAA.T.G..C.TGTTTCC...A.A..A.AAG.T.GA..G.CA.AT.TAA..CTGT.TAA.......G...TAC.G.T...A----      545    540 ,    536    536     108:>gi355344232gbHQ613403.1, Zaire ebolavirus isolate M-M, partial genome                                                     
 109 >gi355344222gbHQ613402.1, Zaire ebolavirus isolate 034-KS, partial genome                                                  CT.GA.AA...TG.ACGGAAGC.T..T.T.TT.GA...AA..A...CAA..CT..C.CG..T..TCA.A.G.TA.ACC.GT....CGT....T.AGTA...T..A...G.T.C...C..TATGC.G.....C.T..G.CC.AG.C...ATC..ATG.AG..C....T...GAT...TTTTC...C..AT....TAG..AC......A..CG.GGCCTC.AGG..CCCG.CC..AG...AT.TGC...C...T..AA.T..T....A...G.CAC.....A.T.T..CC..GAG.TG.T..G..TAAT.C....T.T...C.TGTA.AAAG..CGCT.....CT.GA.GA.CACC....ATCA.AG..TG..TC...C...A.A..GCA.CGG.....C.CTT.ACACA....ACCC......C.TCCC.C.A.CTC.G..T.GT.T.ACTTCT....CTC.T.GGT.G.T.....T.GA..GCGGGGCT.CG.T....TG..A.AAAGC.A.G...G.....GA...GCTG..ATAT..CG.C.TTC..A..TGAAG...ATGGAT.....CTAT..A.GG.CTA.....CC..TG..TG.....T...GC.A.G.T.TTA.T.CG..CG...AGT.AA.GTT.G..A.G.C...TG.C.G..TTA....AAAC....G..C.T.C..G..A.GAT.G.C..T.T.TCCA...GGTAA.TGA.T..GT.G..A.TCA.T.......G..T..A....GCA..CA.AT.T...C...CG.T..C..G.CC...TCA..G.AAT.TTC..AA.......TA.GGC...A...AC.TTGTTAA.T.C.TC.TGTCCC..G.....A.GT.A.AGGCC...T.ACAG...TGGT..GGA.A.AA..T.TT....A.CCA...CA.AA.TG.ATG..CAT.A..TTTTAA.A...T.CGAA.T.G..C.TGTTTCC...A.A..A.AAG.T.GA..G.CA.AT.TAA..CTGT.TAA.......G...TAC.G.T...A----      554    539 ,    545    535     109:>gi355344222gbHQ613402.1, Zaire ebolavirus isolate 034-KS, partial genome                                                  
 110 >gi436409319gbKC242789.1, Zaire ebolavirus isolate EBOV/H.sapiens-tc/COD/2007/4 Luebo, complete genome                     CT.GA.AA...TG.ACGGAAGC.T..T.T.TT.GA...AA..A...CAA..CT..C.CG..T..TCA.A.G.TA.ACC.GT....CGT....T.AGTA...T..A...G.T.C...C..TATGC.G.....C.T..G.CC.AG.C...ATC..ATG.AG..C....T...GAT...TTTTC...C..AT....TAG..AC......A..CG.GGCCTC.AGG..CCCG.CC..AG...AT.TGC...C...T..AA.T..T....A...G.CAC.....A.T.T..CC..GAG.TG.T..G..TAAT.C....T.T...C.TGTA.AAAG..CGCT.....CT.GA.GA.CACC....ATCA.AG..TG..TC...C...A.A..GCA.CGG.....C.CTT.ACACA....ACCC......C.TCCC.C.A.CTC.G..T.GT.T.ACTTCT....CTC.T.GGT.G.T.....T.GA..GCGGGGCT.CG.T....TG..A.AAAGC.A.G...G.....GA...GCTG..ATAT..CG.C.TTC..A..TGAAG...ATGGAT.....CTAT..A.GG.CTA.....CC..TG..TG.....T...GC.A.G.T.TTA.T.CG..CG...AGT.AA.GTT.G..A.G.C...TG.C.G..TTA....AAAC....G..C.T.C..G..A.GAT.G.C..T.T.TCCA...GGTAA.TGA.T..GT.G..A.TCA.T.......G..T..A....GCA..CA.AT.T...C...CG.T..C..G.CC...TCA..G.AAT.TTC..AA.......TA.GGC...A...AC.TTGTTAA.TTC.TC.TGTCCC..G.....A.GT.A.AGGCC...T.ACAG...TGGT..GGA.A.AA..T.TT....A.CCA...CA.AA.TG.ATG..CAT.A..TTTTAA.A...T.CGAA.T.G..C.TGTTTCC...A.A..A.AAG.T.GA..G.CA.AT.TAA..CTGT.TAA.......G...TAC.G.T...AGC.T      541    539 ,    541    539     110:>gi436409319gbKC242789.1, Zaire ebolavirus isolate EBOV/H.sapiens-tc/COD/2007/4 Luebo, complete genome                     
 111 >gi436409289gbKC242786.1, Zaire ebolavirus isolate EBOV/H.sapiens-tc/COD/2007/1 Luebo, complete genome                     CT.GA.AA...TG.ACGGAAGC.T..T.T.TT.GA...AA..A...CAA..CT..C.CG..T..TCA.A.G.TA.ACC.GT....CGT....T.AGTA...T..A...G.T.C...C..TATGC.G.....C.T..G.CC.AG.C...ATC..ATG.AG..C....T...GAT...TTTTC...C..AT....TAG..AC......A..CG.GGCCTC.AGG..CCCG.CC..AG...AT.TGC...C...T..AA.T..T....A...G.CAC.....A.T.T..CC..GAG.TG.T..G..TAAT.C....T.T...C.TGTA.AAAG..CGCT.....CT.GA.GA.CACC....ATCA.AG..TG..TC...C...A.A..GCA.CGG.....C.CTT.ACACA....ACCC......C.TCCC.C.A.CTC.G..T.GT.T.ACTTCT....CTC.T.GGT.G.T.....T.GA..GCGGGGCT.CG.T....TG..A.AAAGC.A.G...G.....GA...GCTG..ATAT..CG.C.TTC..A..TGAAG...ATGGAT.....CTAT..A.GG.CTA.....CC..TG..TG.....T...GC.A.G.T.TTA.T.CG..CG...AGT.AA.GTT.G..A.G.C...TG.C.G..TTA....AAAC....G..C.T.C..G..A.GAT.G.C..T.T.TCCA...GGTAA.TGA.T..GT.G..A.TCA.T.......G..T..A....GCA..CA.AT.T...C...CG.T..C..G.CC...TCA..G.AAT.TTC..AA.......TA.GGC...A...AC.TTGTTAA.TTC.TC.TGTCCC..G.....A.GT.A.AGGCC...T.ACAG...TGGT..GGA.A.AA..T.TT....A.CCA...CA.AA.TG.ATG..CAT.A..TTTTAA.A...T.CGAA.T.G..C.TGTTTCC...A.A..A.AAG.T.GA..G.CA.AT.TAA..CT.T.TAA.......G...TAC.G.T...AGC.T      538    538 ,    538    538     111:>gi436409289gbKC242786.1, Zaire ebolavirus isolate EBOV/H.sapiens-tc/COD/2007/1 Luebo, complete genome                     
 112 >gi436409429gbKC242800.1, Zaire ebolavirus isolate EBOV/H.sapiens-tc/GAB/2002/Ilembe, complete genome                      C.C.A.AA...T..ACG.A..C.T..T.T.TT.GG.......A...CAA...T....CG..T..T.A.A...TA.AC...T..........GT.AG.A...T......G.T.C.C....TAT...GC....C.T..G..C..G.C....TC..ATG.AG..C....T...G.T...T.......C...T.....AG.A..........AC....CCT.A.G...CC.G.C....G...AT.T.C...C...T.....T..T....A..CG.CA..........T..A....AG.TG.T...T..A.T.C....T.T...C...T...AAG..C.CT.....CT..A..A..ACC....A.CA..G......CC...C...A....G...C.G....TC.C.....ACA.....CCC......C.T..C.C.A.C...G..T.GT...ACTTC.....CTC.T.GGT.G.T..T..T.G...GCGGGGCT.CG.T....TG..A.AAAG..A.G.........GA...GCTG.T.T.T..C..C.........TGA.G..CA.GGAT....TC.AT.....G..........C...GA.T......T...GC.....T.T.AGT.CG..CG....GT..A..TT......G.C...TG.C.G...TA....AA.C....G..C......G..A..A..G.C..T.T.TCCA...G...A.T.A.T...T.G..A..CA.T.......G..T..A....GCA..CA.A......C....G.T.GC.....C....C...G.AATGC.C..AA........A.GGC...A...AC.T.GT.AA.T.C..C.TGTC.C..G.......GT...A.GCC.....A..G...TGG...G.A.A.A...T.T....G..C.....C......G.AT.....T.A..TTTTA..A...T.C.AA.T.G..C..GTT.CC...AGA..A..A..T..A..G.CA..T..AA..CT.T.TAA.........-.TA..G.....AGC.T      601    390 ,    600    389     112:>gi436409429gbKC242800.1, Zaire ebolavirus isolate EBOV/H.sapiens-tc/GAB/2002/Ilembe, complete genome                      
 113 >gi566573369gbKF827427.1, Mutant Zaire ebolavirus, complete sequence                                                       C.C.A.AA..CT..ACG.A..CGT.TTGTATT.GA.AG..A.A.G.CAAA..T...CCG.CT..T.A.AT.AT..AC...T.....G....GT.AG.A...TT..GT.GTT.CAC..G.TAT...G..G..C.T.CG..C..GTC....TCATATGGAGCCC.GA.T...G.TTCAT.......C...T...C.AG...C.......C.C.A..CCT.A..G..CC.GAC..G.G..TAT.T.C.GG....TAG..C...T..C.AT..G.CA.........AT..A..T.AGCTGCT...T..A.T..G..AT.T..TCG..T.A.AAG..C.CT...G.CTG.ACGAC.ACC....A.CA..GT.....TC...C..AAT.T.G..GC.GA..CTCTC.....ACA..TT.CCC..A..TCAT.CC.C.A.CT.CGT.TAGT...ACTTC.C...CTC.TAGG.CGTT..T..TCGA..GCGGGGCT.CG.TA...TGG.A.AAAG..A.G..T......GAGGCGCTG.T.T.T..C.CC....A..CGTGA.G..TA.GGATG...TC.ATC....GA......TT.C...GA.T...T..T.CGG......TCT.A.T.CG..CG.T..GTGAA..TT...C..G.C..TTG.CAGC.TTACA.TAA.CGCGGGA.C.T...AG.TA..A.CG.C.AT.T.TCCAT.AG...A.T.ACTC..T.G.GAC.CATT.AGC.C.G..TA.A.A.GGCA.TCA.A......C....G.TTGC.....C....C.CCG.AATGC.C..AAC..TTAT.AAGGC...A...AC.T.GT.AA.T.CG.CTTGTC.CA.G....T..GT...A.GCCGTT..A..GA.ATGG...G.A.A.A.C.T.T..CTG..C.....C....A.GCAT..A.AT.AT.TTTTA..AATGT.C.AAAT.G.CC..GTT.CC.CTA.ACCA....CTT.A..G.CAT.T..AA..CT.TATAA.T.C....C..TA..GG....AGC.T      562    560 ,    562    560     113:>gi566573369gbKF827427.1, Mutant Zaire ebolavirus, complete sequence                                                       
 114 >gi23630482gbAY142960.1, Zaire Ebola virus strain Mayinga subtype Zaire, complete genome                                   C.C.A.AA..CT..ACG.A..CGT.TTGTATT.GA.AG..A.A.G.CAAA..T...CCG.CT..T.A.AT.AT..AC...T.....G....GT.AG.A...TT..GT.GTT.CAC..G.TAT...G..G..C.T.CG..C..GTC....TCATATGGAGCCC.GA.T...G.TTCAT.......C...T...C.AG...C.......C.C.A..CCT.A..G..CC.GAC..G.G..TAT.T.C.GG....TAG..C...T..C.AT..G.CA.........AT..A..T.AGCTGCT...T..A.T..G..AT.T..TCG..T.A.AAG..C.CT...G.CTG.ACGAC.ACC....A.CA..GT.....TC...C..AAT.T.G..GC.GA..CTCTC.....ACA..TT.CCC..A..TCAT.CC.C.A.CT.CG..TAGT...ACTTC.C...CTC.TAGG.CGTT..T..TCGA..GCGGGGCT.CG.TA...TGG.A.AAAG..A.G..T......GAGGCGCTG.T.T.T..C.CC....A..CGTGA.G..TA.GGATG...TC.ATC....GA......TT.C...GA.T...T..T.CGG......TCT.A.T.CG..CG.TA.GTGAA..TT...C..G.C..TTG.CAGC.TTACA.TAA.CGCGGGA.C.T...AG.TA..A.CG.C.AT.T.TCCAT.AG...A.T.ACTC..T.G.GAC.CATT.A.C.C.G..TA.A.A.GGCA.TCA.A......C....G.TTGC.....C....C.CCG.AATGC.C..AAC..TTAT.AAGGC...A...AC.T.GT.AA.T.CG.CTTGTC.CA.G....T..GT...A.GCCGTT..A..GA.ATGG...G.A.A.A.C.T.T..CTG..C.....C....A.GCAT..A.AT.AT.TTTTA..AATGT.C.AAAT.G.CC..GTT.CC.CTA.ACCA....CTT.A..G.CAT.T..AA..CT.TATAA.T.C....C..TA..GG....AGC.T      559    559 ,    559    559     114:>gi23630482gbAY142960.1, Zaire Ebola virus strain Mayinga subtype Zaire, complete genome                                   
 115 >gi436409339gbKC242791.1, Zaire ebolavirus isolate EBOV/H.sapiens-tc/COD/1977/Bonduni, complete genome                     C.C.A.AA..CT..ACG.A..CGT.TTGTATT.GA.AG..A.A.G.CAAA..T...CCG.CT..T.A.AT.AT..AC...T.....G....GT.AG.A...TT..GT.GTT.CAC..G.TAT...G..G..C.T.CG..C..GTC....TCATATGGAGCCC.GA.T...G.TTCAT.......C...T...C.AG...C.......C.C.A..CCT.A..G..CC.GAC..G.G..TAT.T.C.GG....TAG..C...T..C.AT..G.CA.......C.AT..A..T.AGCTGCT...T..A.T..G..AT.T..TCG..T.A.AAG..C.CT...G.CTG.ACGAC.ACC....A.CA..GT.....TC...C..AAT.T.G..GC.GA..CTCTC.....ACA..TT.CCC..A..TCAT.CC.C.A.CT.CG..TAGT...ACTTC.C...CTC.TAGG.CGTT..T..TCGA..GCGGGGCT.CG.TA...TGG.A.AAAG..A.G..T......GAGGCGCTG.T.T.T..C.CC....A..CGTGA.G..TA.GGATG...TC.ATC....GA......TT.C...GA.T...T..T.CGG......TCT.A.T.CG..CG.TA.GTGAA..TT...C..G.C..TTG.CAGC.TTACA.TAA.CGCGGGA.C.T...AG.TA..A.CG.C.AT.T.TCCAT.AG...A.T.ACTC..T.G.GAC.CATT.A.C.C.G..TA.A.A.GGCA.TCA.A......C....G.TTGC.....C....C.CCG.AATGC.C..AAC..TTAT.AAGGC...A...AC.T.GT.AA.T.CG.CTTGTC.CA.G....T..GT...A.GCCGTT..A..GA.ATGG...G.A.A.A.C.T.T..CTG..C.....C....A.GCAT..A.AT.AT.TTTTA..AATGT.C.AAAT.G.CC..GTT.CC.CTA.ACCA....CTT.A..G.CAT.T..AA..CT.TATAA.T.C....C..TA..GG....AGC.T      560    560 ,    560    560     115:>gi436409339gbKC242791.1, Zaire ebolavirus isolate EBOV/H.sapiens-tc/COD/1977/Bonduni, complete genome                     
 116 >gi298226048,emb,HC874665.1, Sequence 11 from Patent WO2010053573                                                          C.C.A.AA..CT..ACG.A..CGT.TTGTATT.GA.AG..A.AGG.CAAA..T...CCG.CT..T.A.AT.AT..AC...T.....G....GT.AG.A...TT..GT.GTT.CAC..G.TAT...G..G..C.T.CG..C..GTC..C.TCATATGGAGCCC.GA.T...G.TTCAT.......C...T.....AG...C.......C.C.A..CCT.A..G..CC.GAC..G.G..TAT.T.C.GG....TAG..C...T..C.AT..G.CA.......C.AT..A..T.AGCTGCT...T..A.T..G..AT.T..TCG..T.A.AAG..C.CT...G.CTG.ACGAC.ACC...CA.CA..GT.....TC...C.CAAT.T.G..GC.GA..CTCTC.....ACA..TT.CCC..A..TCAT.CC.C.A.CT.CG..TAGT...ACTTC.C...CTC.TAGG.CGTT..T..TCGA..GCGGGGCT.CG.TA...TGG.A.AAAG..A.G..T......GAGGCGCTGGT.T.T..C.CC....A..CGTGA.G..TA.GGATG...TC.ATC....GA......TT.C...GA.T...T..T.CGG.T....TCT.A.T.CG..CG.TA.GTGAA..TT...C..G.C..TTG.CAGC.TTACA.TAA.CGCGGGA.C.T...AG.TA..A.CG.C.AT.T.TCCAT.AG...A.T.ACTC..T.G.GAC.CATT.A.C.C.G..TA.A.A.GGCA.TCA.A......C....G.TTGC.....CC...C.CCG.AATGC.C..AAC..TTAT.AAGGC...A...AC.T.GT.AA.T.CG.CTTGTC.CA.G....T..GTG..A.GCCGTT..A..GA.ATGG...G.A.A.A.C.TGT..CTG..C.....C....A.GCAT..A.AT.AT.TTTTA..AATGT.C.AAAT.G.CC..GTT.CC.CTA.ACCA....CTT.A..G.CAT.T..AA..CT.TATAA.T.C....C..TA..GG....AGC.T      568    568 ,    568    568     116:>gi298226048,emb,HC874665.1, Sequence 11 from Patent WO2010053573                                                          
 117 >gi269841403,emb,HC069221.1, Sequence 12 from Patent WO2009128867                                                          C.C.A.AA..CT..ACG.A..CGT.TTGTATT.GA.AG..A.AGG.CAAA..T...CCG.CT..T.A.AT.AT..AC...T.....G....GT.AG.A...TT..GT.GTT.CAC..G.TAT...G..G..C.T.CG..C..GTC..C.TCATATGGAGCCC.GA.T...G.TTCAT.......C...T.....AG...C.......C.C.A..CCT.A..G..CC.GAC..G.G..TAT.T.C.GG....TAG..C...T..C.AT..G.CA.......C.AT..A..T.AGCTGCT...T..A.T..G..AT.T..TCG..T.A.AAG..C.CT...G.CTG.ACGAC.ACC...CA.CA..GT.....TC...C.CAAT.T.G..GC.GA..CTCTC.....ACA..TT.CCC..A..TCAT.CC.C.A.CT.CG..TAGT...ACTTC.C...CTC.TAGG.CGTT..T..TCGA..GCGGGGCT.CG.TA...TGG.A.AAAG..A.G..T......GAGGCGCTGGT.T.T..C.CC....A..CGTGA.G..TA.GGATG...TC.ATC....GA......TT.C...GA.T...T..T.CGG.T....TCT.A.T.CG..CG.TA.GTGAA..TT...C..G.C..TTG.CAGC.TTACA.TAA.CGCGGGA.C.T...AG.TA..A.CG.C.AT.T.TCCAT.AG...A.T.ACTC..T.G.GAC.CATT.A.C.C.G..TA.A.A.GGCA.TCA.A......C....G.TTGC.....CC...C.CCG.AATGC.C..AAC..TTAT.AAGGC...A...AC.T.GT.AA.T.CG.CTTGTC.CA.G....T..GTG..A.GCCGTT..A..GA.ATGG...G.A.A.A.C.TGT..CTG..C.....C....A.GCAT..A.AT.AT.TTTTA..AATGT.C.AAAT.G.CC..GTT.CC.CTA.ACCA....CTT.A..G.CAT.T..AA..CT.TATAA.T.C....C..TA..GG....AGC.T      568    568 ,    568    568     117:>gi269841403,emb,HC069221.1, Sequence 12 from Patent WO2009128867                                                          
 118 >gi21702647gbAF499101.1, Zaire Ebola virus strain Mayinga, complete genome                                                 C.C.A.AA..CT..ACG.A..CGT.TTGTATT.GA.AG..A.AGG.CAAA..T...CCG.CT..T.A.AT.AT..AC...T.....G....GT.AG.A...TT..GT.GTT.CAC..G.TAT...G..G..C.T.CG..C..GTC..C.TCATATGGAGCCC.GA.T...G.TTCAT.......C...T.....AG...C.......C.C.A..CCT.A..G..CC.GAC..G.G..TAT.T.C.GG....TAG..C...T..C.AT..G.CA.......C.AT..A..T.AGCTGCT...T..A.T..G..AT.T..TCG..T.A.AAG..C.CT...G.CTG.ACGAC.ACC...CA.CA..GT.....TC...C.CAAT.T.G..GC.GA..CTCTC.....ACA..TT.CCC..A..TCAT.CC.C.A.CT.CG..TAGT...ACTTC.C...CTC.TAGG.CGTT..T..TCGA..GCGGGGCT.CG.TA...TGG.A.AAAG..A.G..T......GAGGCGCTGGT.T.T..C.CC....A..CGTGA.G..TA.GGATG...TC.ATC....GA......TT.C...GA.T...T..T.CGG.T....TCT.A.T.CG..CG.TA.GTGAA..TT...C..G.C..TTG.CAGC.TTACA.TAA.CGCGGGA.C.T...AG.TA..A.CG.C.AT.T.TCCAT.AG...A.T.ACTC..T.G.GAC.CATT.A.C.C.G..TA.A.A.GGCA.TCA.A......C....G.TTGC.....CC...C.CCG.AATGC.C..AAC..TTAT.AAGGC...A...AC.T.GT.AA.T.CG.CTTGTC.CA.G....T..GTG..A.GCCGTT..A..GA.ATGG...G.A.A.A.C.TGT..CTG..C.....C....A.GCAT..A.AT.AT.TTTTA..AATGT.C.AAAT.G.CC..GTT.CC.CTA.ACCA....CTT.A..G.CAT.T..AA..CT.TATAA.T.C....C..TA..GG....AGC.T      568    568 ,    568    568     118:>gi21702647gbAF499101.1, Zaire Ebola virus strain Mayinga, complete genome                                                 
 119 >gi269841401,emb,HC069217.1, Sequence 7 from Patent WO2009128867                                                           C.C.A.AA..CT..ACG.A..CGT.TTGTATT.GA.AG..A.A.G.CAAA..T...CCG.CT..T.A.AT.AT..AC...T.....G....GT.AG.A...TT..GT.GTT.CAC..G.TAT...G..G..C.T.CG..C..GTC....TCATATGGAGCCC.GA.T...G.TTCAT.......C...T...C.AG...C.......C.C.A..CCT.A..G..CC.GAC..G.G..TAT.T.C.GG....TAG..C...T..C.AT..G.CA.........AT..A..T.AGCTGCT...T..A.T..G..AT.T..TCG..T.A.AAG..C.CT...G.CTG.ACGAC.ACC....A.CA..GT.....TC...C..AAT.T.G..GC.GA..CTCTC.....ACA..TT.CCC..A..TCAT.CC.C.A.CT.CG..TAGT...ACTTC.C...CTC.TAGG.CGTT..T..TCGA..GCGGGGCT.CG.TA...TGG.A.AAAG..A.G..T......GAGGCGCTG.T.T.T..C.CC....A..CGTGA.G..TA.GGATG...TC.ATC....GA......TT.C...GA.T...T..T.CGG......TCT.A.T.CG..CG.TA.GTGAA..TT...C..G.C..TTG.CAGC.TTACA.TAA.CGCGGGA.C.T...AG.TA..A.CG.C.AT.T.TCCAT.AG...A.T.ACTC..T.G.GAC.CATT.A.C.C.G..TA.A.A.GGCA.TCA.A......C....G.TTGC.....C....C.CCG.AATGC.C..AAC..TTAT.AAGGC...A...AC.T.GT.AA.T.CG.CTTGTC.CA.G....T..GT...A.GCCGTT..A..GA.ATGG...G.A.A.A.C.T.T..CTG..C.....C....A.GCAT..A.AT.AT.TTTTA..AATGT.C.AAAT.G.CC..GTT.CC.CTA.ACCA....CTT.A..G.CAT.T..AA..CT.TATAA.T.C....C..TA..GG....AGC.T      559    559 ,    559    559     119:>gi269841401,emb,HC069217.1, Sequence 7 from Patent WO2009128867                                                           
 120 >gi436409439gbKC242801.1, Zaire ebolavirus isolate EBOV/H.sapiens-tc/COD/1976/deRoover, complete genome                    C.C.A.AA..CT..ACG.A..CGT.TTGTATT.GA.AG..A.A.G.CAAA..T...CCG.CT..T.A.AT.AT..AC...T.....G....GT.AG.A...TT..GT.GTT.CAC..G.TAT...G..G..C.T.CG..C..GTC....TCATATGGAGCCC.GA.T...G.TTCAT.......C...T...C.AG...C.......C.C.A..CCT.A..G..CC.GAC..G.G..TAT.T.C.GG....TAG..C...T..C.AT..G.CA.........AT..A..T.AGCTGCT...T..A.T..G..AT.T..TCG..T.A.AAG..C.CT...G.CTG.ACGAC.ACC....A.CA..GT.....TC...C..AAT.T.G..GC.GA..CTCTC.....ACA..TT.CCC..A..TCAT.CC.C.A.CT.CG..TAGT...ACTTC.C...CTC.TAGG.CGTT..T..TCGA..GCGGGGCT.CG.TA...TGG.A.AAAG..A.G..T......GAGGCGCTG.T.T.T..C.CC....A..CGTGA.G..TA.GGATG...TC.ATC....GA......TT.C...GA.T...T..T.CGG......TCT.A.T.CG..CG.TA.GTGAA..TT...C..G.C..TTG.CAGC.TTACA.TAA.CGCGGGA.C.T...AG.TA..A.CG.C.AT.T.TCCAT.AG...A.T.ACTC..T.G.GAC.CATT.A.C.C.G..TA.A.A.GGCA.TCA.A......C....G.TTGC.....C....C.CCG.AATGC.C..AAC..TTAT.AAGGC...A...AC.T.GT.AA.T.CG.CTTGTC.CA.G....T..GT...A.GCCGTT..A..GA.ATGG...G.A.A.A.C.T.T..CTG..C.....C....A.GCAT..A.AT.AT.TTTTA..AATGT.C.AAAT.G.CC..GTT.CC.CTA.ACCA....CTT.A..G.CAT.T..AA..CT.TATAA.T.C....C..TA..GG....AGC.T      560    559 ,    560    559     120:>gi436409439gbKC242801.1, Zaire ebolavirus isolate EBOV/H.sapiens-tc/COD/1976/deRoover, complete genome                    
 121 >gi298226046,emb,HC874661.1, Sequence 7 from Patent WO2010053573                                                           C.C.A.AA..CT..ACG.A..CGT.TTGTATT.GA.AG..A.A.G.CAAA..T...CCG.CT..T.A.AT.AT..AC...T.....G....GT.AG.A...TT..GT.GTT.CAC..G.TAT...G..G..C.T.CG..C..GTC....TCATATGGAGCCC.GA.T...G.TTCAT.......C...T...C.AG...C.......C.C.A..CCT.A..G..CC.GAC..G.G..TAT.T.C.GG....TAG..C...T..C.AT..G.CA.........AT..A..T.AGCTGCT...T..A.T..G..AT.T..TCG..T.A.AAG..C.CT...G.CTG.ACGAC.ACC....A.CA..GT.....TC...C..AAT.T.G..GC.GA..CTCTC.....ACA..TT.CCC..A..TCAT.CC.C.A.CT.CG..TAGT...ACTTC.C...CTC.TAGG.CGTT..T..TCGA..GCGGGGCT.CG.TA...TGG.A.AAAG..A.G..T......GAGGCGCTG.T.T.T..C.CC....A..CGTGA.G..TA.GGATG...TC.ATC....GA......TT.C...GA.T...T..T.CGG......TCT.A.T.CG..CG.TA.GTGAA..TT...C..G.C..TTG.CAGC.TTACA.TAA.CGCGGGA.C.T...AG.TA..A.CG.C.AT.T.TCCAT.AG...A.T.ACTC..T.G.GAC.CATT.A.C.C.G..TA.A.A.GGCA.TCA.A......C....G.TTGC.....C....C.CCG.AATGC.C..AAC..TTAT.AAGGC...A...AC.T.GT.AA.T.CG.CTTGTC.CA.G....T..GT...A.GCCGTT..A..GA.ATGG...G.A.A.A.C.T.T..CTG..C.....C....A.GCAT..A.AT.AT.TTTTA..AATGT.C.AAAT.G.CC..GTT.CC.CTA.ACCA....CTT.A..G.CAT.T..AA..CT.TATAA.T.C....C..TA..GG....AGC.T      559    559 ,    559    559     121:>gi298226046,emb,HC874661.1, Sequence 7 from Patent WO2010053573                                                           
 122 >gi347641082,emb,JA489037.1, Sequence 20 from Patent EP2350270                                                             C.C.A.AA..CT..ACG.A..CGT.TTGTATT.GA.AG..A.A.G.CAAA..T...CCG.CT..T.A.AT.AT..AC...T.....G....GT.AG.A...TT..GT.GTT.CAC..G.TAT...G..G..C.T.CG..C..GTC....TCATATGGAGCCC.GA.T...G.TTCAT.......C...T...C.AG...C.......C.C.A..CCT.A..G..CC.GAC..G.G..TAT.T.C.GG....TAG..C...T..C.AT..G.CA.........AT..A..T.AGCTGCT...T..A.T..G..AT.T..TCG..T.A.AAG..C.CT...G.CTG.ACGAC.ACC....A.CA..GT.....TC...C..AAT.T.G..GC.GA..CTCTC.....ACA..TT.CCC..A..TCAT.CC.C.A.CT.CGT.TAGT...ACTTC.C...CTC.TAGG.CGTT..T..TCGA..GCGGGGCT.CG.TA...TGG.A.AAAG..A.G..T......GAGGCGCTG.T.T.T..C.CC....A..CGTGA.G..TA.GGATG...TC.ATC....GA......TT.C...GA.T...T..T.CGG......TCT.A.T.CG..CG.TA.GTGAA..TT...C..G.C..TTG.CAGC.TTACA.TAA.CGCGGGA.C.T...AG.TA..A.CG.C.AT.T.TCCAT.AG...A.T.ACTC..T.G.GAC.CATT.A.C.C.G..TA.A.A.GGCA.TCA.A......C....G.TTGC.....C....C.CCG.AATGC.C..AAC..TTAT.AAGGC...A...AC.T.GT.AA.T.CG.CTTGTC.CA.G....T..GT...A.GCCGTT..A..GA.ATGG...G.A.A.A.C.T.T..CTG..C.....C....A.GCAT..A.AT.AT.TTTTA..AATGT.C.AAAT.G.CC..GTT.CC.CTA.ACCA....CTT.A..G.CAT.T..AA..CT.TATAA.T.C....C..TA..GG....AGC.T      560    560 ,    560    560     122:>gi347641082,emb,JA489037.1, Sequence 20 from Patent EP2350270                                                             
 123 >gi298226054,emb,HC874677.1, Sequence 23 from Patent WO2010053573                                                          C.C.A.AA..CT..ACG.A..CGT.TTGTATT.GA.AG..A.A.G.CAAA..T...CCG.CT..T.A.AT.AT..AC...T.....G....GT.AG.A...TT..GT.GTT.CAC..G.TAT...G..G..C.T.CG..C..GTC....TCATATGGAGCCC.GA.T...G.TTCAT.......C...T...C.AG...C.......C.C.A..CCT.A..G..CC.GAC..G.G..TAT.T.C.GG....TAG..C...T..C.AT..G.CA.........AT..A..T.AGCTGCT...T..A.T..G..AT.T..TCG..T.A.AAG..C.CT...G.CTG.ACGAC.ACC....A.CA..GT.....TC...C..AAT.T.G..GC.GA..CTCTC.....ACA..TT.CCC..A..TCAT.CC.C.A.CT.CGT.TAGT...ACTTC.C...CTC.TAGG.CGTT..T..TCGA..GCGGGGCT.CG.TA...TGG.A.AAAG..A.G..T......GAGGCGCTG.T.T.T..C.CC....A..CGTGA.G..TA.GGATG...TC.ATC....GA......TT.C...GA.T...T..T.CGG......TCT.A.T.CG..CG.TA.GTGAA..TT...C..G.C..TTG.CAGC.TTACA.TAA.CGCGGGA.C.T...AG.TA..A.CG.C.AT.T.TCCAT.AG...A.T.ACTC..T.G.GAC.CATT.A.C.C.G..TA.A.A.GGCA.TCA.A......C....G.TTGC.....C....C.CCG.AATGC.C..AAC..TTAT.AAGGC...A...AC.T.GT.AA.T.CG.CTTGTC.CA.G....T..GT...A.GCCGTT..A..GA.ATGG...G.A.A.A.C.T.T..CTG..C.....C....A.GCAT..A.AT.AT.TTTTA..AATGT.C.AAAT.G.CC..GTT.CC.CTA.ACCA....CTT.A..G.CAT.T..AA..CT.TATAA.T.C....C..TA..GG....AGC.T      560    560 ,    560    560     123:>gi298226054,emb,HC874677.1, Sequence 23 from Patent WO2010053573                                                          
 124 >gi269841409,emb,HC069235.1, Sequence 26 from Patent WO2009128867                                                          C.C.A.AA..CT..ACG.A..CGT.TTGTATT.GA.AG..A.A.G.CAAA..T...CCG.CT..T.A.AT.AT..AC...T.....G....GT.AG.A...TT..GT.GTT.CAC..G.TAT...G..G..C.T.CG..C..GTC....TCATATGGAGCCC.GA.T...G.TTCAT.......C...T...C.AG...C.......C.C.A..CCT.A..G..CC.GAC..G.G..TAT.T.C.GG....TAG..C...T..C.AT..G.CA.........AT..A..T.AGCTGCT...T..A.T..G..AT.T..TCG..T.A.AAG..C.CT...G.CTG.ACGAC.ACC....A.CA..GT.....TC...C..AAT.T.G..GC.GA..CTCTC.....ACA..TT.CCC..A..TCAT.CC.C.A.CT.CGT.TAGT...ACTTC.C...CTC.TAGG.CGTT..T..TCGA..GCGGGGCT.CG.TA...TGG.A.AAAG..A.G..T......GAGGCGCTG.T.T.T..C.CC....A..CGTGA.G..TA.GGATG...TC.ATC....GA......TT.C...GA.T...T..T.CGG......TCT.A.T.CG..CG.TA.GTGAA..TT...C..G.C..TTG.CAGC.TTACA.TAA.CGCGGGA.C.T...AG.TA..A.CG.C.AT.T.TCCAT.AG...A.T.ACTC..T.G.GAC.CATT.A.C.C.G..TA.A.A.GGCA.TCA.A......C....G.TTGC.....C....C.CCG.AATGC.C..AAC..TTAT.AAGGC...A...AC.T.GT.AA.T.CG.CTTGTC.CA.G....T..GT...A.GCCGTT..A..GA.ATGG...G.A.A.A.C.T.T..CTG..C.....C....A.GCAT..A.AT.AT.TTTTA..AATGT.C.AAAT.G.CC..GTT.CC.CTA.ACCA....CTT.A..G.CAT.T..AA..CT.TATAA.T.C....C..TA..GG....AGC.T      560    560 ,    560    560     124:>gi269841409,emb,HC069235.1, Sequence 26 from Patent WO2009128867                                                          
 125 >gi10141003gbAF086833.2, Ebola virus - Mayinga, Zaire, 1976, complete genome                                               C.C.A.AA..CT..ACG.A..CGT.TTGTATT.GA.AG..A.A.G.CAAA..T...CCG.CT..T.A.AT.AT..AC...T.....G....GT.AG.A...TT..GT.GTT.CAC..G.TAT...G..G..C.T.CG..C..GTC....TCATATGGAGCCC.GA.T...G.TTCAT.......C...T...C.AG...C.......C.C.A..CCT.A..G..CC.GAC..G.G..TAT.T.C.GG....TAG..C...T..C.AT..G.CA.........AT..A..T.AGCTGCT...T..A.T..G..AT.T..TCG..T.A.AAG..C.CT...G.CTG.ACGAC.ACC....A.CA..GT.....TC...C..AAT.T.G..GC.GA..CTCTC.....ACA..TT.CCC..A..TCAT.CC.C.A.CT.CGT.TAGT...ACTTC.C...CTC.TAGG.CGTT..T..TCGA..GCGGGGCT.CG.TA...TGG.A.AAAG..A.G..T......GAGGCGCTG.T.T.T..C.CC....A..CGTGA.G..TA.GGATG...TC.ATC....GA......TT.C...GA.T...T..T.CGG......TCT.A.T.CG..CG.TA.GTGAA..TT...C..G.C..TTG.CAGC.TTACA.TAA.CGCGGGA.C.T...AG.TA..A.CG.C.AT.T.TCCAT.AG...A.T.ACTC..T.G.GAC.CATT.A.C.C.G..TA.A.A.GGCA.TCA.A......C....G.TTGC.....C....C.CCG.AATGC.C..AAC..TTAT.AAGGC...A...AC.T.GT.AA.T.CG.CTTGTC.CA.G....T..GT...A.GCCGTT..A..GA.ATGG...G.A.A.A.C.T.T..CTG..C.....C....A.GCAT..A.AT.AT.TTTTA..AATGT.C.AAAT.G.CC..GTT.CC.CTA.ACCA....CTT.A..G.CAT.T..AA..CT.TATAA.T.C....C..TA..GG....AGC.T      560    560 ,    560    560     125:>gi10141003gbAF086833.2, Ebola virus - Mayinga, Zaire, 1976, complete genome                                               
 126 >gi10313991,ref,NC_002549.1, Zaire ebolavirus isolate Ebola virus H.sapiens-tc/COD/1976/Yambuku-Mayinga, complete genome   C.C.A.AA..CT..ACG.A..CGT.TTGTATT.GA.AG..A.A.G.CAAA..T...CCG.CT..T.A.AT.AT..AC...T.....G....GT.AG.A...TT..GT.GTT.CAC..G.TAT...G..G..C.T.CG..C..GTC....TCATATGGAGCCC.GA.T...G.TTCAT.......C...T...C.AG...C.......C.C.A..CCT.A..G..CC.GAC..G.G..TAT.T.C.GG....TAG..C...T..C.AT..G.CA.........AT..A..T.AGCTGCT...T..A.T..G..AT.T..TCG..T.A.AAG..C.CT...G.CTG.ACGAC.ACC....A.CA..GT.....TC...C..AAT.T.G..GC.GA..CTCTC.....ACA..TT.CCC..A..TCAT.CC.C.A.CT.CGT.TAGT...ACTTC.C...CTC.TAGG.CGTT..T..TCGA..GCGGGGCT.CG.TA...TGG.A.AAAG..A.G..T......GAGGCGCTG.T.T.T..C.CC....A..CGTGA.G..TA.GGATG...TC.ATC....GA......TT.C...GA.T...T..T.CGG......TCT.A.T.CG..CG.TA.GTGAA..TT...C..G.C..TTG.CAGC.TTACA.TAA.CGCGGGA.C.T...AG.TA..A.CG.C.AT.T.TCCAT.AG...A.T.ACTC..T.G.GAC.CATT.A.C.C.G..TA.A.A.GGCA.TCA.A......C....G.TTGC.....C....C.CCG.AATGC.C..AAC..TTAT.AAGGC...A...AC.T.GT.AA.T.CG.CTTGTC.CA.G....T..GT...A.GCCGTT..A..GA.ATGG...G.A.A.A.C.T.T..CTG..C.....C....A.GCAT..A.AT.AT.TTTTA..AATGT.C.AAAT.G.CC..GTT.CC.CTA.ACCA....CTT.A..G.CAT.T..AA..CT.TATAA.T.C....C..TA..GG....AGC.T      560    560 ,    560    560     126:>gi10313991,ref,NC_002549.1, Zaire ebolavirus isolate Ebola virus H.sapiens-tc/COD/1976/Yambuku-Mayinga, complete genome   
 127 >gi269841411,emb,HC069239.1, Sequence 30 from Patent WO2009128867                                                          C.C.A.AA..CT..ACG.A..CGT.TTGTATT.GA.AG..A.A.G.CAAA..T...CCG.CT..T.A.AT.AT..AC...T.....G....GT.AG.A...TT..GT.GTT.CAC..G.TAT...G..G..C.T.CG..C..GTC....TCATATGGAGCCC.GA.T...G.TTCAT.......C...T...C.AG...C.......C.C.A..CCT.A..G..CC.GAC..G.G..TAT.T.C.GG....TAG..C...T..C.AT..G.CA.........AT..A..T.AGCTGCT...T..A.T..G..AT.T..TCG..T.A.AAG..C.CT...G.CTG.ACGAC.ACC....A.CA..GT.....TC...C..AAT.T.G..GC.GA..CTCTC.....ACA..TT.CCC..A..TCAT.CC.C.A.CT.CGT.TAGT...ACTTC.C...CTC.TAGG.CGTT..T..TCGA..GCGGGGCT.CG.TA...TGG.A.AAAG..A.G..T......GAGGCGCTG.T.T.T..C.CC....A..CGTGA.G..TA.GGATG...TC.ATC....GA......TT.C...GA.T...T..T.CGG......TCT.A.T.CG..CG.TA.GTGAA..TT...C..G.C..TTG.CAGC.TTACA.TAA.CGCGGGA.C.T...AG.TA..A.CG.C.AT.T.TCCAT.AG...A.T.ACTC..T.G.GAC.CATT.A.C.C.G..TA.A.A.GGCA.TCA.A......C....G.TTGC.....C....C.CCG.AATGC.C..AAC..TTAT.AAGGC...A...AC.T.GT.AA.T.CG.CTTGTC.CA.G....T..GT...A.GCCGTT..A..GA.ATGG...G.A.A.A.C.T.T..CTG..C.....C....A.GCAT..A.AT.AT.TTTTA..AATGT.C.AAAT.G.CC..GTT.CC.CTA.ACCA....CTT.A..G.CAT.T..AA..CT.TATAA.T.C....C..TA..GG....AGC.T      560    560 ,    560    560     127:>gi269841411,emb,HC069239.1, Sequence 30 from Patent WO2009128867                                                          
 128 >gi298226056,emb,HC874681.1, Sequence 27 from Patent WO2010053573                                                          C.C.A.AA..CT..ACG.A..CGT.TTGTATT.GA.AG..A.A.G.CAAA..T...CCG.CT..T.A.AT.AT..AC...T.....G....GT.AG.A...TT..GT.GTT.CAC..G.TAT...G..G..C.T.CG..C..GTC....TCATATGGAGCCC.GA.T...G.TTCAT.......C...T...C.AG...C.......C.C.A..CCT.A..G..CC.GAC..G.G..TAT.T.C.GG....TAG..C...T..C.AT..G.CA.........AT..A..T.AGCTGCT...T..A.T..G..AT.T..TCG..T.A.AAG..C.CT...G.CTG.ACGAC.ACC....A.CA..GT.....TC...C..AAT.T.G..GC.GA..CTCTC.....ACA..TT.CCC..A..TCAT.CC.C.A.CT.CGT.TAGT...ACTTC.C...CTC.TAGG.CGTT..T..TCGA..GCGGGGCT.CG.TA...TGG.A.AAAG..A.G..T......GAGGCGCTG.T.T.T..C.CC....A..CGTGA.G..TA.GGATG...TC.ATC....GA......TT.C...GA.T...T..T.CGG......TCT.A.T.CG..CG.TA.GTGAA..TT...C..G.C..TTG.CAGC.TTACA.TAA.CGCGGGA.C.T...AG.TA..A.CG.C.AT.T.TCCAT.AG...A.T.ACTC..T.G.GAC.CATT.A.C.C.G..TA.A.A.GGCA.TCA.A......C....G.TTGC.....C....C.CCG.AATGC.C..AAC..TTAT.AAGGC...A...AC.T.GT.AA.T.CG.CTTGTC.CA.G....T..GT...A.GCCGTT..A..GA.ATGG...G.A.A.A.C.T.T..CTG..C.....C....A.GCAT..A.AT.AT.TTTTA..AATGT.C.AAAT.G.CC..GTT.CC.CTA.ACCA....CTT.A..G.CAT.T..AA..CT.TATAA.T.C....C..TA..GG....AGC.T      560    560 ,    560    560     128:>gi298226056,emb,HC874681.1, Sequence 27 from Patent WO2010053573                                                          
 129 >gi298226057,emb,HC874683.1, Sequence 29 from Patent WO2010053573                                                          C.C.A.AA..CT..ACG.A..CGT.TTGTATT.GA.AG..A.A.G.CAAA..T...CCG.CT..T.A.AT.AT..AC...T.....G....GTTAG.A...TT..GTTGTT.CAC..G.TAT...G..G..C.T.CG..C..GTCCC..TCATATGGAGCCC.GA.T...G.TTCAT.......C...T...C.AG...C.......C.C.A..CCT.A..G..CC.GAC..G.G..TAT.T.C.GG....TAG..C...T..C.AT..G.CA.........AT..A..T.AGCTGCT...T..A.T..G..AT.T..TCG..T.A.AAG..C.CT...G.CTG.ACGAC.ACC....A.CA..GT.....TC...C..AAT.T.G..GC.GA..CTCTC.....ACA..TT.CCC..A..TCAT.CC.C.A.CT.CGT.TAGT...ACTTC.C...CTC.TAGG.CGTT..T..TCGA..GCGGGGCT.CG.TA...TGG.A.AAAG..A.G..T......GAGGCGCTG.T.A.T..C.CC....A..CGTGA.G..TA.GGATG...TC.ATC....GA......TT.C...GA.T...T..T.CGG.....ATCT.A.T.CGC.CGTTA.GTGAA..TT...C..G.C..TTG.CAGC.TTACA.TAA.CGCGGGA.C.T...AG.TA..A.CG.C.AT.T.TCCAT.AG...A.T.ACTC..T.G.GAC.CATT.A.C.C.G..TA.A.A.GGCA.TCA.A....G.C....G.TTGC.....C....C.CCG.AATGC.C..AAC..TTAT.AAGGC...A...AC.T.GT.AA.T.CG.CTTGTC.CA.G....T..GT...A.GCCGTT..A..GA.ATGG...G.A.A.A.C.T.T..CTG..C.....C....A.GCAT..A.AT.AT.TTTTA..AATGT.C.AAAT.G.CC..GTT.CC.CTA.ACCA....CTT.A..G.CAT.T..AA..CT.TATAA.T.C....C..TA..GG....AGC.T      568    568 ,    568    568     129:>gi298226057,emb,HC874683.1, Sequence 29 from Patent WO2010053573                                                          
 130 >gi269841412,emb,HC069241.1, Sequence 32 from Patent WO2009128867                                                          C.C.A.AA..CT..ACG.A..CGT.TTGTATT.GA.AG..A.A.G.CAAA..T...CCG.CT..T.A.AT.AT..AC...T.....G....GTTAG.A...TT..GTTGTT.CAC..G.TAT...G..G..C.T.CG..C..GTCCC..TCATATGGAGCCC.GA.T...G.TTCAT.......C...T...C.AG...C.......C.C.A..CCT.A..G..CC.GAC..G.G..TAT.T.C.GG....TAG..C...T..C.AT..G.CA.........AT..A..T.AGCTGCT...T..A.T..G..AT.T..TCG..T.A.AAG..C.CT...G.CTG.ACGAC.ACC....A.CA..GT.....TC...C..AAT.T.G..GC.GA..CTCTC.....ACA..TT.CCC..A..TCAT.CC.C.A.CT.CGT.TAGT...ACTTC.C...CTC.TAGG.CGTT..T..TCGA..GCGGGGCT.CG.TA...TGG.A.AAAG..A.G..T......GAGGCGCTG.T.A.T..C.CC....A..CGTGA.G..TA.GGATG...TC.ATC....GA......TT.C...GA.T...T..T.CGG.....ATCT.A.T.CGC.CGTTA.GTGAA..TT...C..G.C..TTG.CAGC.TTACA.TAA.CGCGGGA.C.T...AG.TA..A.CG.C.AT.T.TCCAT.AG...A.T.ACTC..T.G.GAC.CATT.A.C.C.G..TA.A.A.GGCA.TCA.A....G.C....G.TTGC.....C....C.CCG.AATGC.C..AAC..TTAT.AAGGC...A...AC.T.GT.AA.T.CG.CTTGTC.CA.G....T..GT...A.GCCGTT..A..GA.ATGG...G.A.A.A.C.T.T..CTG..C.....C....A.GCAT..A.AT.AT.TTTTA..AATGT.C.AAAT.G.CC..GTT.CC.CTA.ACCA....CTT.A..G.CAT.T..AA..CT.TATAA.T.C....C..TA..GG....AGC.T      568    568 ,    568    568     130:>gi269841412,emb,HC069241.1, Sequence 32 from Patent WO2009128867                                                          
 131 >gi11761745gbAF272001.1, Zaire Ebola virus strain Mayinga, complete genome                                                 C.C.A.AA..CT..ACG.A..CGT.TTGTATT.GA.AG..A.A.G.CAAA..T...CCG.CT..T.A.AT.AT..AC...T.....G....GTTAG.A...TT..GTTGTT.CAC..G.TAT...G..G..C.T.CG..C..GTCCC..TCATATGGAGCCC.GA.T...G.TTCAT.......C...T...C.AG...C.......C.C.A..CCT.A..G..CC.GAC..G.G..TAT.T.C.GG....TAG..C...T..C.AT..G.CA.........AT..A..T.AGCTGCT...T..A.T..G..AT.T..TCG..T.A.AAG..C.CT...G.CTG.ACGAC.ACC....A.CA..GT.....TC...C..AAT.T.G..GC.GA..CTCTC.....ACA..TT.CCC..A..TCAT.CC.C.A.CT.CGT.TAGT...ACTTC.C...CTC.TAGG.CGTT..T..TCGA..GCGGGGCT.CG.TA...TGG.A.AAAG..A.G..T......GAGGCGCTG.T.A.T..C.CC....A..CGTGA.G..TA.GGATG...TC.ATC....GA......TT.C...GA.T...T..T.CGG.....ATCT.A.T.CGC.CGTTA.GTGAA..TT...C..G.C..TTG.CAGC.TTACA.TAA.CGCGGGA.C.T...AG.TA..A.CG.C.AT.T.TCCAT.AG...A.T.ACTC..T.G.GAC.CATT.A.C.C.G..TA.A.A.GGCA.TCA.A....G.C....G.TTGC.....C....C.CCG.AATGC.C..AAC..TTAT.AAGGC...A...AC.T.GT.AA.T.CG.CTTGTC.CA.G....T..GT...A.GCCGTT..A..GA.ATGG...G.A.A.A.C.T.T..CTG..C.....C....A.GCAT..A.AT.AT.TTTTA..AATGT.C.AAAT.G.CC..GTT.CC.CTA.ACCA....CTT.A..G.CAT.T..AA..CT.TATAA.T.C....C..TA..GG....AGC.T      568    568 ,    568    568     131:>gi11761745gbAF272001.1, Zaire Ebola virus strain Mayinga, complete genome                                                 
 132 >gi297340571gbEU224440.2, Zaire ebolavirus strain Mayinga, complete genome                                                 C.C.A.AA..CT..ACG.A..CGT.TTGTATT.GA.AG..A.A.G.CAAA..T...CCG.CT..T.A.AT.AT..AC...T.....G....GT.AG.A...TT..GT.ATT.CAC.CG.TA..CCGC.G.CC.T.CG..C..GTC....TCATATGGAGCCC.GA.T...G.TTCAT.......C...T...C.AG...C.......C.C.A..CCT.A..G..CC.GAC..G.G..TAT.T.C.GG....TAG..C...T..C.AT..G.CA.........AT..A..T.AGCTGCT...TC.A.T..G..AT.T..TCG..T.A.AAG..C.CT...G.CTG.ACGAC.ACC....A.CA..GT.....TC...C..AAT.T.G..GC.GA..CTCTC.....ACA..TT.CCC..A..TCAT.CC.C.A.CT.CGT.TAGT...ACTTC.C...CTC.TAGG.CGTT..T..TCGA..GCGGGGCT.CG.TA...TGG.A.AAAG..A.G..T......GAGGCGCTG.T.T.T..C.CC....A..CGTGA.G..TA.GGATG...TC.ATC....GA......TT.C...GA.T...T..T.CGG.....ATCT.A.T.CGC.CG.TA.GTGAA..TT...C..G.C..TTG.CAGC.TTACA.TAA.CGCGGGA.C.T...AG.TA..A.CG.C.AT.T.TCCAT.AG...A.T.ACTC..T.G.GAC.CATT.A.C.C.G..TA.A.A.GGCA.TCA.A......C....G.TTGC.....C....C.CCG.AATGC.C..AAC..TTAT.AAGGC...A...AC.T.GT.AA.T.CG.CTTGTC.CA.G....T..GT...A.GCCGTT..A..GA.ATGG...G.A.A.A.C.T.T..CT...C.....C....A.GCAT..A.AT.AT.TTTTA..AATGT.C.AAAT.G.CC..GTT.CC.CTA.ACCA....CTT.A..G.CAT.T..AA..CT.TATAA.T.C....C..TA..GG....AGC.T      576    566 ,    576    566     132:>gi297340571gbEU224440.2, Zaire ebolavirus strain Mayinga, complete genome                                                 
 133 >gi436409399gbKC242797.1, Zaire ebolavirus isolate EBOV/H.sapiens-tc/GAB/1996/1Oba, complete genome                        C.C.ATAA.G.T..ACG.A..CGT.TT.T.TTGGG......GA.GGCAAAC.T....CGC.T..T.AAAT.AT.CAC.T.TAGG..G....GT.AG.ATATTT.....G.TACACA...TA....G.A..CCTT..GG.C..G.C....TCATATG.AGCCC.GA.T...G.T.CAT....AA.C...TCACC.AG...CT.A....C.C....CCT.A..G..CC.G.C..G.GCTTAT.T.C.G.CG..TAG..C...T...TA.ACG.CA.C.GGT...ATTGA....AGCTG.TAG.T..A.TG..AGAT.TG..C...T...AAGTCC.C.CCAGTCT..A.GA..ACCGCG.A.CAA.G....G.TC..CCT.AAT..AG..GC.G..T..C.C..C..ACACA...C.CG.A.CTCAT.CC.C.A.CT.CG.GTAGTA.CACTTC..TGGCTCGT.GG.CGTT.ATTTTCGAAAGCGGGGCTACGGTA...TGGAATAAAG.GA.G.G..CGTG.GAGG.GCTG...T.TCCC..C........GTTA.GG.TA.GGAT.CCTTC.ATCG...G....TAG.T.C.T.GA.T.AG..GTACGG......TCT.A.TACG..CG..A.GT..A..TT..T..CGTCCTTTGTCAGCGTTACAGTAA.CGCG.G.GCCTC...GGTAT.A.CGACGAT.TATCCA.AAG...A.T.ACTCCGT.G..A..CATTA.TC.CGGG.TATACAT.GCAC.CATA.T...ACCGT.GATTGC.T.A.C.G..C.CCG.AATGC.C.CAA....TAT.GAGGCGCTAGGTACCT.GT.AA.T.C..C.T.TC.CACGC......GT..TA.GCC.TT.GA..GAA.TGG..AG.ATAGA.C.T.T..C.G.GC..G..C......G.AT.AA..TCA..TTTTA.AA.T.T.C.AAATAG.CCG.GTT.CCCC.AC..CA....CT..AT.G.CAT.T..AAA.CT.T.TAA.....AC....TA.GGG.T..AGCAT      644    644 ,    644    644     133:>gi436409399gbKC242797.1, Zaire ebolavirus isolate EBOV/H.sapiens-tc/GAB/1996/1Oba, complete genome                        
 134 >gi436409359gbKC242793.1, Zaire ebolavirus isolate EBOV/H.sapiens-tc/GAB/1996/1Eko, complete genome                        C.C.ATAA.G.T..ACG.A..CGT.TT.T.TTGGG......GA.GGCAAAC.T....CGC.T..T.AAAT.AT.CAC.T.TAGG..G....GT.AG.ATATTT.....G.TACACA...TA....G.A..CCTT..GG.C..G.C....TCATATG.AGCCC.GA.T...G.T.CAT....AA.C...TCACC.AG...CT.A....C.C....CCT.A..G..CC.G.C..G.GCTTAT.T.C.G.CG..TAG..C...T...TA.ACG.CA.C.GGT...ATTGA....AGCTG.TAG.T..A.TG..AGAT.TG..C...T...AAGTCC.C.CCAGTCT..A.GA..ACCGCG.A.CAA.G....G.TC..CCT.AAT..AG..GC.G..T..C.C..C..ACACA...C.CG.A.CTCAT.CC.C.A.CT.CG.GTAGTA.CACTTC..TGGCTCGT.GG.CGTT.ATTTTCGAAAGCGGGGCTACGGTA...TGGAATAAAG.GA.G.G..CGTG.GAGG.GCTG...T.TCCC..C........GTTA.GG.TA.GGAT.CCTTC.ATCG...G....TAG.T.C.T.GA.T.AG..GTACGG......TCT.A.TACG..CG..A.GT..A..TT..T..CGTCCTTTGTCAGCGTTACAGTAA.CGCG.G.GCCTC...GGTAT.A.CGACGAT.TATCCA.AAG...A.T.ACTCCGT.G..A..CATTA.TC.CGGG.TATACAT.GCAC.CATA.T...ACCGT.GATTGC.T.A.C.G..C.CCG.AATGC.C.CAA....TAT.GAGGCGCTAGGTACCT.GT.AA.T.C..C.T.TC.CACGC......GT..TA.GCC.TT.GA..GAA.TGG..AG.ATAGA.C.T.T..C.G.GC..G..C......G.AT.AA..TCA..TTTTA.AA.T.T.C.AAATAG.CCG.GTT.CCCC.AC..CA....CT..AT.G.CAT.T..AAA.CT.T.TAA.....AC....TA.GGG.T..AGCAT      644    644 ,    644    644     134:>gi436409359gbKC242793.1, Zaire ebolavirus isolate EBOV/H.sapiens-tc/GAB/1996/1Eko, complete genome                        
 135 >gi436409379gbKC242795.1, Zaire ebolavirus isolate EBOV/H.sapiens-tc/GAB/1996/1Mbie, complete genome                       C.C.ATAA.G.T..ACG.A..CGT.TT.T.TTGGG......GA.GGCAAAC.T....CGC.T..T.AAAT.AT.CAC.T.TAGG..G....GT.AG.ATATTT.....G.TACACA...TA....G.A..CCTT..GG.C..G.C....TCATATG.AGCCC.GA.T...G.T.CAT....AA.C...TCACC.AG...CT.A....C.C....CCT.A..G..CC.G.C..G.GCTTAT.T.C.G.CG..TAG..C...T...TA.ACG.CA.C.GGT...ATTGA....AGCTG.TAG.T..A.TG..AGAT.TG..C...T...AAGTCC.C.CCAGTCT..A.GA..ACCGCG.A.CAA.G....G.TC..CCT.AAT..AG..GC.G..T..C.C..C..ACACA...C.CG.A.CTCAT.CC.C.A.CT.CG.GTAGTA.CACTTC..TGGCTCGT.GG.CGTT.ATTTTCGAAAGCGGGGCTACGGTA...TGGAATAAAG.GA.G.G..CGTG.GAGG.GCTG...T.TCCC..C........GTTA.GG.TA.GGAT.CCTTC.ATCG...G....TAG.T.C.T.GA.T.AG..GTACGG......TCT.A.TACG..CG..A.GT..A..TT..T..CGTCCTTTGTCAGCGTTACAGTAA.CGCG.G.GCCTC...GGTAT.A.CGACGAT.TATCCA.AAG...A.T.ACTCCGT.G..A..CATTA.TC.CGGG.TATACAT.GCAC.CATA.T...ACCGT.GATTGC.T.A.C.G..C.CCG.AATGC.C.CAA....TAT.GAGGCGCTAGGTACCT.GT.AA.T.C..C.T.TC.CACGC......GT..TA.GCC.TT.GA..GAA.TGG..AG.ATAGA.C.T.T..C.G.GC..G..C......G.AT.AA..TCA..TTTTA.AA.T.T.C.AAATAG.CCG.GTT.CCCC.AC..CA....CT..AT.G.CAT.T..AAA.CT.T.TAA.....AC....TA.GGG.T..AGCAT      644    644 ,    644    644     135:>gi436409379gbKC242795.1, Zaire ebolavirus isolate EBOV/H.sapiens-tc/GAB/1996/1Mbie, complete genome                       
 136 >gi436409349gbKC242792.1, Zaire ebolavirus isolate EBOV/H.sapiens-tc/GAB/1994/Gabon, complete genome                       C.C.ATAA...T..ACG.A..CGT.TT.T.TTGGG......GA.GGCAAAC.T....CGC.T..T.AAAT.AT.CAC.T.TAGG..G....GT.AG.A.ATTT.....G.TACACA...TA....G....CCTT..GG.C..G.C....TCATATG.AGCCC.GA.T...G.T.CAT....AA.C...TCACC.AG...CT.A....C.C....CCT.A..G..CC.G.C..G.GCTTAT.T.C.G.C...TAG..C...T...TA.ACG.CA.C.GGT.A.ATTGA....AGCTG.TAG.T..A.TG..AGAT.T...C...T...AAGTCC.C.CCAGTCT..A.GA..ACCGCG.A.CAA.G....G.TC..CCT.AAT..AG..GC.G..T..C.C..C..ACACA...C.CG.A.CTCAT.CC.C.A.CT.CG.GTAGTA.CACTTC..TGGCTC.T.GG.CGTT..TTTTCGAAAGCGGGGCTACGGTA...TGGAATAAAG.GA.G.G....TG.GAGG.GCTG...T.TCCC..C........GTTA.GG.TA.GGAT.CCTTC.ATCG...G....TAG.T.C.T.GA.T.AG...TACGG......TCT.A.TACG..CG..A.GT..A..TT..T..CG.CCTTTGTCAGCGTTACAGTAA.CGCG.G.GCCTC...G.TAT.A.CGACGAT.TATCCA..AG...A.T.ACTCCGT.G..A..CATT..TC.CGGG.TATACA..GCAC.CATA.T...ACCGT.GATTGC.T.A.C.G..C.CCG.AATGC.C.CAA....TAT.AAGGCGCTAGGTAC.T.GT.AA.T.C..C.T.TC.CACGC......GT..TA.GCC.TT.GA..GAA.TGG..AG.ATA.A.C.T.T..C.G.GC..G..C......G.AT.AA..TCA..TTTTA.AA.T.T.C.AAATAG.CCG.GTT.CC.C.AC..CA....CT..AT.G.CAT.T..AAA.CT.T.TAA.....A.....TA.GGG.T..AGCAT      640    626 ,    640    626     136:>gi436409349gbKC242792.1, Zaire ebolavirus isolate EBOV/H.sapiens-tc/GAB/1994/Gabon, complete genome                       
 137 >gi436409409gbKC242798.1, Zaire ebolavirus isolate EBOV/H.sapiens-tc/GAB/1996/1Ikot, complete genome                       C.C.ATAA...T..ACG.A..CGT.TT.T.TTGGG......GA.GGCAAA..T....CGC.TG.T.AAAT.AT.CAC.T.T..GC.G....GT.AG.A..TTT.....G.T.CACA...TA....G...GCCTT..GG.C..G.C....TCCTATG.AGCCC.GATTCC.G.T.CAT....AATC...TCACC.AGG..CTGA..C.C.C....CCT.A..G..CCGG.C.TG.GCTTAT.T.C.G.C...TAG..C.TTT...TA.ACG.CA.C.GGT...ATTGA....AGCTG.TA..T..A.TG..AGAT.T...C...T...AAGTCC.C.CCAGTCT..A.GA..ACCGCG.A.CAA.G....GTTCA.CCT.AAT..AG..GC.G.CT..C.C..C..ACACA...C.CG.A.CTCAT.CCAC.A.CT.CG.GTAGTA.CACTTC..TGGCTC.T.GG.CGTTG.TTTTCGAAAGCGGGGCTACGGTACCCTGGAATAAAG.GA.G......TGCGAGGCGCTG...T.TC....C.....C..GTTA.GG.TA.GGAT.CCTTC.ATCG...G....TAG.T.C.T.GA.T.AG...TACGG......TCT.AGTACG..CG..A.GT..A..TT.....CG.CCTTTGTCAGCGTTACAGTAA.CGCG.G.GCCTC...G.TAT.A.CGACGAT.TATCCA..AG...AGT.ACTCCGT.G..A..CATT..TC.CGGGGTATACA..GCAC.CATA.T...ACCGT.GATTGC.T.A.C.G..C.CCG.AATGC.C..AA..C.TAT.AAGGCGCTAGGTAC.T.GT.AACT.C..C.T.TC.CACGCC....TGT..TA.GCC.TT.GA..GAA.TGG..AG.ATA.A.C.T.T.GC.G..C..G..C.G....G.AT.AA..TCA..TTTTA.AA.TCT.C.AAATAGCCCG.GTT.CC.C.AC..CAC...CT..AT.G.CAT.TG.AAA.CT.T.TAA.....A...C.TA.GGG.TC.A.CAT      652    652 ,    652    652     137:>gi436409409gbKC242798.1, Zaire ebolavirus isolate EBOV/H.sapiens-tc/GAB/1996/1Ikot, complete genome                       
 138 >gi436409369gbKC242794.1, Zaire ebolavirus isolate EBOV/H.sapiens-tc/GAB/1996/2Nza, complete genome                        C.C.ATAA...T..ACG.A..CGT.TT.T.TTGGG......GA.GGCAAA..T....CGC.TG.T.AAAT.AT.CAC.T.T..GC.G....GT.AG.A..TTT.....G.T.CACA...TA....G...GCCTT..GG.C..G.C....TCCTATG.AGCCC.GATTCC.G.T.CAT....AATC...TCACC.AGG..CTGA..C.C.C....CCT.A..G..CCGG.C.TG.GCTTAT.T.C.G.C...TAG..C.TTT...TA.ACG.CA.C.GGT...ATTGA....AGCTG.TA..T..A.TG..AGAT.T...C...T...AAGTCC.C.CCAGTCT..A.GA..ACCGCG.A.CAA.G....GTTCA.CCT.AAT..AG..GC.G.CT..C.C..C..ACACA...C.CG.A.CTCAT.CCAC.A.CT.CG.GTAGTA.CACTTC..TGGCTC.T.GG.CGTTG.TTTTCGAAAGCGGGGCTACGGTACCCTGGAATAAAG.GA.G......TGCGAGGCGCTG...T.TC....C.....C..GTTA.GG.TA.GGAT.CCTTC.ATCG...G....TAG.T.C.T.GA.T.AG...TACGG......TCT.AGTACG..CG..A.GT..A..TT.....CG.CCTTTGTCAGCGTTACAGTAA.CGCG.G.GCCTC...G.TAT.A.CGACGAT.TATCCA..AG...AGT.ACTCCGT.G..A..CATT..TC.CGGGGTATACA..GCAC.CATA.T...ACCGT.GATTGC.T.A.C.G..C.CCG.AATGC.C..AA..C.TAT.AAGGCGCTAGGTAC.T.GT.AACT.C..C.T.TC.CACGCC....TGT..TA.GCC.TT.GA..GAA.TGG..AG.ATA.A.C.T.T.GC.G..C..G..C.G....G.AT.AA..TCA..TTTTA.AA.TCT.C.AAATAGCCCG.GTT.CC.C.AC..CAC...CT..AT.G.CAT.TG.AAA.CT.T.TAA.....A...C.TA.GGG.TC.A.CAT      652    652 ,    652    652     138:>gi436409369gbKC242794.1, Zaire ebolavirus isolate EBOV/H.sapiens-tc/GAB/1996/2Nza, complete genome                        
 139 >gi33860540gbAY354458.1, Zaire ebolavirus strain Zaire 1995, complete genome                                               C.C.ATAA...T.CACG.A..CGTTTT.T.TT.GAC.....GA.G.CAAA..TT...CGC.T.CT.AAAT.AT.CAC...T..G..G.AATGT.AG.A..TTTA....G.T.CAC...TTA...CGC....C.TG.G..C..G.C....TCATATG.AGCCCGGA.T..CG.T.CAT....AA.CC..TC.CC.AG.C.C..ATT..CAC....CCT.A..GCTCC.G.C..G.G.TTATGT.CCG...A.TAG..C...T.A..A..CG.CA.CG.GT...ATTGA....AGCTG.T...TC.A.T.....ATCT.A.C...T...AAG.CC.C.C.AG.CT..A.GA..ACCGC..A.CA..G.C....TC.A.CT.AAT..AG..GC.G.....C.C..C..ACA.....CCCGTACCTCAT.CC.CGAGCT.CG.GTAGT..CACTTC.....CTC.T.GG.CGTT..TTTTCGA..GCGGGGCTACG.TA...TGG.ATAAAG..ATGT.....TG.GAGGCGCTG...T.TC.C..CC.......GTGA.GGTTA.GGAT..C.TC.AT...A.G........T.C.T.GA.T..G.C.T.CGG...A..TCT.A.TACG.GCG..AAGT..A..TTG....CG.C.TTTG.CAGT.TTACAGTAA.CGCG.G..C.T....G.TAT.A.CG.C.AT.T.TCCA..AG...AGT.ACTC.GT.G..A...ATT...C.C.G..TA.A.A..GCA..CA.A.T...AC....G.TTGC.T.A....A.C.CCG.AATGC.CG.AA.G..TAT.AAGTC.CTAG..AC.T.GT.AA.T.C..C.T.TC.CA.G..G....GT..TA.GCC.TT..A.AGA..TGG.A.G.ATA.A.CTT.T..C.G..C...TGC......G.AT..A..TCA.CTTTTA.AA.T.T.C.AAATAG.CC..GTT.CC.C.A...CA....CT..A..GACAT.T..AAAGCT.T.TAAA.G.A.....TTA..GG.T.TAGCAT      596    595 ,    596    595     139:>gi33860540gbAY354458.1, Zaire ebolavirus strain Zaire 1995, complete genome                                               
 140 >gi384406804gbJQ352763.1, Zaire ebolavirus strain Kikwit, complete genome                                                  C.C.ATAA...T.CACG.A..CGTTTT.T.TT.GAC.....GA.G.CAAA..TT...CGC.T.CT.AAAT.AT.CAC...T..G..G.AATGT.AG.A..TTTA....G.T.CAC...TTA...CGC....C.TG.G..C..G.C....TCATATG.AGCCCGGA.T..CG.T.CAT....AA.CC..TC.CC.AG.C.C..ATT..CAC....CCT.A..GCTCC.G.C..G.G.TTATGT.CCG...A.TAG..C...T.A..A..CG.CA.CG.GT...ATTGA....AGCTG.T...TC.A.T.....ATCT.A.C...T...AAG.CC.C.C.AG.CT..A.GA..ACCGC..A.CA..G.C....TC.A.CT.AAT..AG..GC.G.....C.C..C..ACA.....C.CGTACCTCAT.CC.CGAGCT.CG.GTAGT..CACTTC.....CTC.T.GG.CGTT..TTTTCGA..GCGGGGCTACG.TA...TGG.ATAAAG..ATGT.....TG.GAGGCGCTG...T.TC.C..CC.......GTGA.GGTTA.GGAT..C.TC.AT...A.G........T.C.T.GA.T..G.C.T.CGG...A..TCT.A.TACG.GCG..AAGT..A..TTG....CG.C.TTTG.CAGT.TTACAGTAA.CGCG.G..C.T....G.TAT.A.CG.C.AT.T.TCCA..AG...AGT.ACTC.GT.G..A...ATT...C.C.G..TA.A.A..GCA..CA.A.T...AC....G.TTGC.T.A....A.C.CCG.AATGC.CG.AA.G..TAT.AAGTC.CTAG..AC.T.GT.AA.T.C..C.T.TC.CA.G..G....GT..TA.GCC.TT..A.AGA..TGG.A.G.ATA.A.CTT.T..C.G..C...TGC......G.AT..A..TCA.CTTTTA.AA.T.T.C.AAATAG.CC..GTT.CC.C.A...CA....CT..A..GACAT.T..AAAGCT.T.TAAA.G.A.....TTA..GG.T.TAGCAT      598    594 ,    598    594     140:>gi384406804gbJQ352763.1, Zaire ebolavirus strain Kikwit, complete genome                                                  
 141 >gi436409419gbKC242799.1, Zaire ebolavirus isolate EBOV/H.sapiens-tc/COD/1995/13709 Kikwit, complete genome                C.C.ATAA...T.CACG.A..CGTTTT.T.TT.GAC.....GA.G.CAAA..TT...CGC.T.CT.AAAT.AT.CAC...T..G..G.AATGT.AG.A..TTTA....G.T.CAC...TTA...CGC....C.TG.G..C..G.C....TCATATG.AGCCCGGA.T..CG.T.CAT....AA.CC..TC.CC.AG.C.C..ATT..CAC....CCT.A..GCTCC.G.C..G.G.TTATGT.CCG...A.TAG..C...T.A..A..CG.CA.CG.GT...ATTGA....AGCTG.T...TC.A.T.....ATCT.A.C...T...AAG.CC.C.C.AG.CT..A.GA..ACCGC..A.CA..G.C....TC.A.CT.AAT..AG..GC.G.....C.C..C..ACA.....C.CGTACCTCAT.CC.CGAGCT.CG.GTAGT..CACTTC.....CTC.T.GG.CGTT..TTTTCGA..GCGGGGCTACG.TA...TGG.ATAAAG..ATGT.....TG.GAGGCGCTG...T.TC.C..CC.......GTGA.GGTTA.GGAT..C.TC.AT.....G........T.C.T.GA.T..G...T.CGG...A..TCT.A.TACG..CG..AAGT..A..TTG....CG.C.TTTG.CAGT.TTACAGTAA.CGCG.G..C.T....G.TAT.A.CG.C.ATCT.TCCA..AG...AGT.ACTC.GT.G..A...ATT...CGC.G..TA.A.A..GCA..CA.A.T...AC....G.TTGC.T.A....A.C.CCGAAATGC.CG.AA.G..TAT.AAGTC.CTAG..AC.T.GT.AA.T.C..C.T.TC.CA.G..G....GT..TA.GCC.TT..A.AGA..TGG.A.G.ATA.A.C.T.T..C.G..C...TGC......G.AT..A..TCA.CTTTTA.AA.T.T.C.AAATAG.CC..GTT.CC.C.A...CA....CT..A..GACAT.T..AAAGCT.T.TAAA.G.A.....TTA..GG.T.TAGCAT      593    593 ,    593    593     141:>gi436409419gbKC242799.1, Zaire ebolavirus isolate EBOV/H.sapiens-tc/COD/1995/13709 Kikwit, complete genome                
 142 >gi436409389gbKC242796.1, Zaire ebolavirus isolate EBOV/H.sapiens-tc/COD/1995/13625 Kikwit, complete genome                C.C.ATAA...T.CACG.A..CGTTTT.T.TT.GAC.....GA.G.CAAA..TT...CGC.T.CT.AAAT.AT.CAC...T..G..G.AATGT.AG.A..TTTA....G.T.CAC...TTA...CGC....C.TG.G..C..G.C....TCATATG.AGCCCGGA.T..CG.T.CAT....AA.CC..TC.CC.AG.C.C..ATT..CAC....CCT.A..GCTCC.G.C..G.G.TTATGT.CCG...A.TAG..C...T.A..A..CG.CA.CG.GT...ATTGA....AGCTG.T...TC.A.T.....ATCT.A.C...T...AAG.CC.C.C.AG.CT..A.GA..ACCGC..A.CA..G.C....TC.A.CT.AAT..AG..GC.G.....C.C..C..ACA.....C.CGTACCTCAT.CC.CGAGCT.CG.GTAGT..CACTTC.....CTC.T.GG.CGTT..TTTTCGA..GCGGGGCTACG.TA...TGG.ATAAAG..ATGT.....TG.GAGGCGCTG...T.TC.C..CC.......GTGA.GGTTA.GGAT..C.TC.AT.....G........T.C.T.GA.T..G...T.CGG...A..TCT.A.TACG..CG..AAGT..A..TTG....CG.C.TTTG.CAGT.TTACAGTAA.CGCG.G..C.T....G.TAT.A.CG.C.ATCT.TCCA..AG...AGT.ACTC.GT.G..A...ATT...CGC.G..TA.A.A..GCA..CA.A.T...AC....G.TTGC.T.A....A.C.CCGAAATGC.CG.AA.G..TAT.AAGTC.CTAG..AC.T.GT.AA.T.C..C.T.TC.CA.G..G....GT..TA.GCC.TT..A.AGA..TGG.A.G.ATA.A.C.T.T..C.G..C...TGC......G.AT..A..TCA.CTTTTA.AA.T.T.C.AAATAG.CC..GTT.CC.C.A...CA....CT..A..GACAT.T..AAAGCT.T.TAAA.G.A.....TTA..GG.T.TAGCAT      594    593 ,    594    593     142:>gi436409389gbKC242796.1, Zaire ebolavirus isolate EBOV/H.sapiens-tc/COD/1995/13625 Kikwit, complete genome                
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                               
---Index------------------------------------------------------------------------------------------------------------------------TGTACCGGAATCATGTAACGTTACCCCACGCCAATAGAGCGATAAATGGGTTCCATTTATTCAACTGGCCTGAGTGTTCAGGAATTACGGCACCGACGCGCCCGGACCCCCGAGTCTTCCCCATTATTAATTCCATAATTAGACTTTTGCTGCTCAAGTTTTAACCGTTTAGGCTGCCCCTGGCATCGCTGTTAGAAGGTCAGCATTTGTAGAATTCTGGAAACTTAACTTCAGATACTGACCTTAATAGTCGAGGTCCGCCTTCGCGTACTTTTATACGTCTCGAGTTCATATCATCTAACTCGGCTTAGAGCTCACCTACACGGGGGAGATATCTTGACTGAAGTAGTTGTTATATGCTGGGACTCATCGTGGTTCTGGCGCGCAGAAAAGTCTCTCACCTGTGTGAGCCCTTTACGTTCTGCATTGAAGATCTTACACGACGCTGACCTCTCAATCTCCCAACTACCAGCCCCAAGGGAAAAAATCGACACCTTTCAACCACCGATAGCACACAAACATAGAATATATACCCGGTTTATTTACTCTGTCACGGTACAGCAAGCATTCCTCGGTAGGAATACGCGACCTTGAAAGTAAGACAACGTAATCCTAGCACCTACGTATATACAGGACAGGGAACTCCTGTTCTTCAGACTGAAACCGTCACTGGAATAAAGATTCTTGCATCGCACATAGTAGCTCGCTTGCGGAACTCAAACTCATACGAAAGTCTGCCGGCTTTAAAACGCGAGCAATGTCTGCGCCCTAGTTACTAGCCATCCAGTTTAGCTGTTATGCCAACTAAGGTATCAGGCCTAATAAAGAACGTTCAAGCGGACCTACTCCACTTTGTATTATCCCACAGCGAATTTCCCACTTAGGGGAACGGAAGCGAGGAGCTCCAACAGATTCACATGAGCGCATGCAGGTGCTGCTCCGCGGTGGCTCCTAGGGCGATTTTCACACTTTTCCTGTTGTGGATCCAGGTACTGCGCTCTGGATCACGCGGGAATGCTATTCCTTAATCGTCGATGC 
-codon-position-----------------------------------------------------------------------------------------------------------------112 2 211222222 2 1122  22  11212121221 11121 21 11111112111121111111111111111111 111111111111211 121111 1    122 111111111121111 1111 11 1   121121111111211 22  2 2112   212  22222 12 221 2 21121222122222222221 2222222222 2 111 1  1221 2 1122 121 22212222221222222222222222222221222222 212  2 21 2   12 1 22 11222212  211121111 2  1 22 2112 2  112 22222222 22122222222222212222  2221    11  2112 21 2 22112 1  21 12 2 2 11221 2 222 122 2122222222222 22 22221  22 2121112 1122  1 12    22121   1212111211211111111121 1211112112211  121111  221 12212 2 21  1211  2 2  12121 2121 221  1212112  111   22 2 122222221 222222222 2 2112211222221221  121  1 1  2 122121211  2 222222222 22222 22222 2222  2 222 2 22222222222 2222222222221222222222222222222 222222212 222221222222 222222222222222222 12 222222222222 1 22221222  222222 22222222222222222121222212222222222 22222 22222 222  12 21222   2 1 1122 222 222 1 121222 222222222212222 122   222 2222222222 22 2222222222222 2 11 12   1 1 1  1222 1 1 2121   21112121112 1 1  11121221111 2 11 2  
                                                                                                                                000000000000000000000000000000000000000000000000000000111111111111111111111111111111111111111111111111111122222222222222222222222222222222222222222222222222222222222222222222222222223333333333333333333333333333333333334444444444444444444444444444444444444444444444444444455555555555555555555555555555555555555555555555555555555555555555555555556666666666666666666666666666666666666666666777777777777777777777777777777777777777777777777777777777777777777777788888888888888888888888888888888888888888888888899999999999999999999999999999999999999999999999999999999999990000000000000000000000000000000000000000000000000000000000000000001111111111111111111111111111111111111111111111111111111111222222222222222222222222222222222222222222223333333333333333333333333333333333344444444444444444444444444444444444444444444444555555555555555555555555555555555555555556666666666666666666666666666666666666666666666666666666666666666666777777777777777777777777777777777777888888888888888888888888888888888888888888888888888888888888888888888888888888 
                                                                                                                                111111111222222222233333333333344444455566667788889999000111112233444444555555666666667788888888899999999900000000000011111222222222233333333333444444555566666777777788888999999999990000111111112233333334555667778889990000111111122222222333333333444455566666667788889999900000111122233444445555555555555566666666667777777777788888888889999999990000000111112222223445555566667777788889999000011111111122222222223333333333333333444555555566666777777778888888900000001111111112222233333334444444455666777999900000001122344444455555555555566666677777777777778888889999990000000000001111111111111222222222233333444444455555566666667888990000111111122333333333334444444444556666677778888889999999001111222233333444455555566666778888888888990001111122233444445566666788888899900011111111222222333344455556666666677778888999000001111113333344455566666777777788888990000001111222233333334444445555555556666677777777778888889999999999000012233344444455555666777788888899000111222222223333333333333333444444444445555555556666666666777777777778888888 
                                                                                                                                234558889133555666912566777888901236904912582205590117299045993407124579014459014668990601344567901145678914445567889902567022334566612344566789011246138913459011335915568012233378880589112345673511235993037260335890465677566678814455799011244568133903612346780313671247726799145615516345681223344556899912344566791244457889912234456675566778990002344446991357882770245836790113723466789234613466667800013566780022255556667899015023347825678134566771134489817889990123477891466725667781235669903122788124801234790224903367901223556666925568800224566678895556671678990011223568990025667888999012334677700125045669925567700125668367084568012455708014455777780012344568060157934471348992334789493678124835677467902379901279480234578889581491268926628223460234456802557800224900224578111358147814801450034778936781339135015581122590357834900104567135779915799261345793467247922345670011290244556693556802345566780245570012345679156843436711347813677159334501367819579569123344561112344455566779113344578992344556892344556679012344666780247779 
                                                                                                                                739050270506147134563609478158299440104492531900254393434816897995707675760324358237395579439229725954956690396700692572840924362303642813014309701561864328129258893752326647813681787048680778359014916284338081081102485139501240295856746148103938749657202434253318513260679806719192820280191055727232637845923023207512833582451456760264538188010476047091178112343060787128741094423267810905233123791223571259972446726891565516128592367038998505139581524868881580372907034718348495293628982246959204658297743249670774604695664076061456525894949076834536862596842347562905272862680668188079237998192914548252024365706981714065246451615191806427298200729068965890713897129545921717468142035247484416555727524643461053967045386408420173303315197632852246265912967753384014810358061670069452528234143953962254301860140894620936929815294943436227323302061687839056106376866641223798272302665028466796181034334767157306942768795437893144483228314647709810257746519226672547541907040781002612707172455979401588647045188448271654658606369233541357

Attached Files

**JJackson** · September 24, 2014, 06:12 AM

Re: West Africa: Ebola Outbreak Strains Sequenced

Originally posted by gsgs View Post

twice as much -if correct- would be a surprisingly big increase, as compared with flu, where I get a ~30% increase and in HA only in the years after the 1968 pandemic.

30% compared to what?
1968 was a reassortment event rather than a zoonotic emergence so there is no non human reservoir in which it is endemic for comparison purposes.

One other point to consider, in some of the wilder genetic mutation scenarios, is flu has a segmented genome where as EBOV is single stranded. Both are -ssRNA viruses so need to supply their own RNP. In flu this accounts for about half the coding region and I assume the same would apply for EBOV which (I think) has a slightly larger exon. The big difference is reassortment which allows flu to make instant massive changes - this is not an option for single stranded Ebola.

**gsgs** · September 24, 2014, 06:26 AM

Re: Science: Genomic surveillance elucidates Ebola virus origin and transmission during the 2014 outbreak

30% as compared to later years

it was a new host, HA was a bit "nervous" to adapt ?!?

what you mean with "half the coding region " ?

in flu almost everything codes (>90%) and some regions even twice
with different reading frames

ps. I'm updating the list and graph above now with partial sequences included,
wait until after lunch
------------edit-------------
well, only 6 partials, so I skipped that
so, I have 148 ebola-zaire sequences, file ebozai6

--------edit---------glycoprotein amino-acids mutation-picture added

Attached Files

Announcement

Science: Genomic surveillance elucidates Ebola virus origin and transmission during the 2014 outbreak

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