HA 230I Cross-Linked in Slovakia on Broad Background
HA 230I Cross-Linked in Slovakia on Broad Background
We may find this set of sequences to be instructive to the UK severe wave in the days to come when NIMR releases sequences.
HA 230I Cross-Linked in Slovakia on Broad Background
Last Updated 2010-12-31
The
UK National Institute for Medical Research published a group of sequences on 2010-12-30 at GISAID. One group originated from the
National Public Health Institute of Slovakia.
An unusual and persistent background
pivoting around 8 polymorphisms on 5 sequences arose during March 2010 in Slovakia pairing two silent polymorphisms for the first time (
syn23L and
syn177L (CTt)). The Slovakian sequences are all
cross-linked with the
HA syn413K and the
NA syn407V.
Of particular interest is the
Slovakia1625_56X_2010_03_30_xL from a 56 year old of unspecified gender due to the 9th polymorphism, a very rare
HA 230I. As of this deposit, the
multiple backgrounds that are permissive to the
HA 230I change extends to a new platform that
appears to transmit (5 geographically similar sequences in 5 days).
GeneWurx has prepared an
Excel spreadsheet investigating potential genetic acquisition in the currently
uncharted severe Pandemic H1N1 wave in the UK. In Version 1 of this spreadsheet, the Slovakian
230I sequence takes Column U and provides
homology to one UK White Chapel
sequence of interest.
GeneWurx_UK_December_Emerging_Genetics_v1.xls
. . . .
Slovakia1625_56X_2010_03_30_xL (
. . . . . . . . syn23L,
. . . . . . . . 100N,
. . . . . . . . syn177L (CTt),
. . . . . . . . syn216E,
. . . . . . . .
230I (ATa),
. . . . . . . . 324I,
. . . . . . . . syn400F,
. . . . . . . . syn413K,
. . . . . . . . 461E [
UKEngland712_2009_09 with
24K])
. . . . Slovakia1623_39X_2010_03_30_xL (
. . . . . . . . syn23L,
. . . . . . . . 100N,
. . . . . . . . syn177L (CTt),
. . . . . . . . syn216E,
. . . . . . . . 324I,
. . . . . . . . syn400F,
. . . . . . . . syn413K,
. . . . . . . . 452I,
. . . . . . . . 461E [
UKEngland712_2009_09 with
24K])
. . . . Slovakia1624_61X_2010_03_30_xL (
. . . . . . . . syn23L,
. . . . . . . . 100N,
. . . . . . . . syn177L (CTt),
. . . . . . . . syn216E,
. . . . . . . . 324I,
. . . . . . . . syn400F,
. . . . . . . . syn413K,
. . . . . . . . 461E [
UKEngland712_2009_09 with
24K])
. . . . Slovakia1626_59X_2010_03_30_xL (
. . . . . . . . syn23L,
. . . . . . . . 100N,
. . . . . . . . syn177L (CTt),
. . . . . . . . syn216E,
. . . . . . . . 324I,
. . . . . . . . syn400F,
. . . . . . . . syn413K,
. . . . . . . . 461E [
UKEngland712_2009_09 with
24K])
. . . . Slovakia1634_42X_2010_04_03_xL (
. . . . . . . . syn23L,
. . . . . . . . 100N,
. . . . . . . . syn177L (CTt),
. . . . . . . . syn216E,
. . . . . . . . 324I,
. . . . . . . . syn400F,
. . . . . . . . syn413K,
. . . . . . . . 461E [
UKEngland712_2009_09 with
24K])
Supporting Sequences
. . . . UKEngland712_2009_09 (
. . . . . . . . 24K,
. . . . . . . . syn413K,
. . . . . . . . syn456L,
. . . . . . . . 461E [Slovakia1625_56X_2010_03_30_xL with 230I])
. . . . DenmarkHvidovreINS141_2009_11_20_xL (
. . . . . . . . syn23L,
. . . . . . . . syn238E,
. . . . . . . . 324I,
. . . . . . . . syn413K,
. . . . . . . . syn484N,
. . . . . . . . syn549R)
. . . . Victoria508_2010_07_24 (
. . . . . . . . 35I [H5N1],
. . . . . . . . 88P [H2N3, H5N1, H11],
. . . . . . . . . . . [HunanHechengSWL1616_2009-11-23,
. . . . . . . . . . . KoreaAF2376_2009_10_27
. . . . . . . . . . . . . . . with 280A and 290K],
. . . . . . . . syn102E [SingON2407_2009_12_13,
. . . . . . . . . . . . . . . Singapore544_2009_12_10,
. . . . . . . . . . . . . . . Brussels243_2009_11_09
. . . . . . . . . . . . . . . . . . . . with syn44L and 89G],
. . . . . . . . syn152I [CalifVRDL115_2009_12_04,
. . . . . . . . . . . . . . . NY6939_2009_12_11,
. . . . . . . . . . . . . . . tkOntarioFAV117_1C_2009_12_07
. . . . . . . . . . . . . . . . . . . . with 35I, syn219I, syn276H, syn456L, 463V, 523A,
. . . . . . . . . . . . . . . England1050_2009_12,
. . . . . . . . . . . . . . . Scotland103_2009_12,
. . . . . . . . . . . . . . . England1051_2009_12,
. . . . . . . . . . . . . . . ItalyAncona451_2009_11_27_f,
. . . . . . . . . . . . . . . NY6607_2009_11_24,
. . . . . . . . . . . . . . . CalifVRDL107_2009_11_15,
. . . . . . . . . . . . . . . CalifVRDL101_2009_11_05,
. . . . . . . . . . . . . . . DC_114_2009_11_04,
. . . . . . . . . . . . . . . England94800096_2009_11,
. . . . . . . . . . . . . . . Calif_SD35_2009_10_26,
. . . . . . . . . . . . . . . NY5447_2009_10_23,
. . . . . . . . . . . . . . . CalifVRDL84_2009_10_09,
. . . . . . . . . . . . . . . CalifVRDL87_2009_10_09,
. . . . . . . . . . . . . . . IndiaPune6196_2009_08,
. . . . . . . . . . . . . . . IndiaDhule9433_2009_08,
. . . . . . . . . . . . . . . SantoDomingoWR1057N_2009_07_02,
. . . . . . . . . . . . . . . SantoDomingoWR1058N_2009_07_02,
. . . . . . . . . . . . . . . SantoDomingoWR1059N_2009_06_30],
. . . . . . . . 206S,
. . . . . . . . syn219I [CalifVRDL115_2009_12_04
. . . . . . . . . . . . . . . . . with 35I, syn152I, syn276H, syn456L, 463V, 523A,
. . . . . . . . . . . . . . FL_Pen213_2009_11_17
. . . . . . . . . . . . . . . . . . . . with 35I, syn152I, 273A, syn456L, 463V, 523A,
. . . . . . . . . . . . . . CalifVRDL107_2009_11_15
. . . . . . . . . . . . . . . . . . . . with 35I, syn152I, syn276H, syn456L, 463V, 523A,
. . . . . . . . 238D (GAc) [H2N3, H7N3, H7N7],
. . . . . . . . . . . . . . . . . . [Belgorod2_2010-03-15 (GAt),
. . . . . . . . . . . . . . . . . . Kaliningrad01_2009_11_02 (GAt)
. . . . . . . . . . . . . . . . . . . . . . . . with 225E and 226R,
. . . . . . . . . . . . . . . . . . AthensINS398_2010-01-24 GAt),
. . . . . . . . . . . . . . . . . . KaliningradCRIE_DA_2009-09-26 (GAt),
. . . . . . . . . . . . . . . . . . KaliningradCRIE_KG_2009-09-25 (GAt),
. . . . . . . . . . . . . . . . . . KaliningradCRIE_MA_2009-09-25 (GAt),
. . . . . . . . . . . . . . . . . . KaliningradCRIE_SHD_2009-09-25 (GAt),
. . . . . . . . . . . . . . . . . . KaliningradCRIE_ZD_2009-09-25 (GAt)],
. . . . . . . . syn247A [Belize8756_2009_10_08,
. . . . . . . . . . . . . . . Singapore93_2009_06_22]
. . . . . . . . syn254P,
. . . . . . . . 272G [Niigata19_2009_12_31,
. . . . . . . . . . . . GuangdongSWL36_2009_11_29],
. . . . . . . . syn276H,
. . . . . . . . syn388K [H5N1],
. . . . . . . . . . . . . . . [NagasakiHA_10_28_2010_03_23
. . . . . . . . . . . . . . . . . . . . . with 22I,
. . . . . . . . . . . . . . . NagasakiHA_10_26_2010_03_15
. . . . . . . . . . . . . . . . . . . . . with 22I, syn103E,
. . . . . . . . . . . . . . . NagasakiHA_10_24_2010_03_08
. . . . . . . . . . . . . . . . . . . . . with syn103E,
. . . . . . . . . . . . . . . GuangxiLonganSWL1990_2010_02_08
. . . . . . . . . . . . . . . . . . . . . with 453K, syn462E,
. . . . . . . . . . . . . . . JiangxiDonghuSWL15_2010_01_04
. . . . . . . . . . . . . . . . . . . . . with syn106E, 149R, syn456L (TTg),
. . . . . . . . . . . . . . . ViennaINS142_2009_11_26
. . . . . . . . . . . . . . . . . . . . . with syn97D, 99T,
. . . . . . . . . . . . . . . CzechUsti208_2009_11_25
. . . . . . . . . . . . . . . . . . . . . with 268T,
. . . . . . . . . . . . . . . GhanaFS_1921_2009_11_11,
. . . . . . . . . . . . . . . Alaska44_2009_11_17
. . . . . . . . . . . . . . . . . . . . . with syn275V, 276N,
. . . . . . . . . . . . . . . CalifVRDL76_2009_09_21
. . . . . . . . . . . . . . . . . . . . . with syn283Q,
. . . . . . . . . . . . . . . Taiwan206_2009_09_18,
. . . . . . . . . . . . . . . Taiwan177_2009_09_18,
. . . . . . . . . . . . . . . Taiwan167_2009_09_18,
. . . . . . . . . . . . . . . Taiwan156_2009_09_18,
. . . . . . . . . . . . . . . Taiwan143_2009_09_15
. . . . . . . . . . . . . . . . . . . . . with 205E mix,
. . . . . . . . . . . . . . . Utah20_C2_2_2009_07_25_VxX
. . . . . . . . . . . . . . . . . . . . . with 159D, 206S, 227G
. . . . . . . . . . . . . . . Slovenia2687_2009_07_01
. . . . . . . . . . . . . . . . . . . . . with 35I, 206S],
. . . . . . . . syn456L,
. . . . . . . . 463V,
. . . . . . . . 523A [Nebraska02_2010_03_11,
. . . . . . . . . . . . NagasakiHA1022_2010_03_01_syn413K,
. . . . . . . . . . . . DomRepublic3768_2009_12_15,
. . . . . . . . . . . . NY6939_2009_12_11,
. . . . . . . . . . . . CalifVRDL115_2009_12_04,
. . . . . . . . . . . . NY6607_2009_11_24,
. . . . . . . . . . . . RheinlandPfalz81_2009_11_23,
. . . . . . . . . . . . Berlin210_2009_11_16,
. . . . . . . . . . . . BadenWurttemberg511_2009_11_16,
. . . . . . . . . . . . CalifVRDL107_2009_11_15,
. . . . . . . . . . . . FL_Pensacola40_2009_11_09,
. . . . . . . . . . . . CalifVRDL101_2009_11_05,
. . . . . . . . . . . . DC114_2009_11_04,
. . . . . . . . . . . . Calif_SD35_2009_10_26,
. . . . . . . . . . . . NY5447_2009_10_23,
. . . . . . . . . . . . CalifVRDL84_2009_10_09,
. . . . . . . . . . . . CalifVRDL87_2009_10_09,
. . . . . . . . . . . . KuwaitN13013_2009_08_31_syn413K]),