Today at GenBank

[Emily]

And if cocks were related to the possible freeze, then it would be Korean or Chinese cocks
in summer 2014, - America got the additional mutations.

The freeze is what I was thinking about. Birds moving from Vancouver, BC to the Philippines/human participants from the Philippines to Vancouver was openly discussed on a cockfighting forum prior to that big raid. As far as smuggling birds into the US and Canada from anywhere in Asia, that was likely never discussed openly.

http://www.the-scientist.com/?articles.view/articleNo/32659/title/Death-Match/

 

[gsgs]

104 H5N1-HAs from Indonesia !
1 from 2005
3 from 2009
7 from 2010
23 from 2011
16 from 2012
47 from 2013
7 from 2014

http://magictour.free.fr/idn15a1.GIF

the sequences seem to show recombination - I have some doubts

e.g.: KP7429 - 18,41,34,29,39,35,30,42,37,49
http://www.ncbi.nlm.nih.gov/nuccore/KP742929

AUTHORS Wibawa,H., Dharmawan,R., Pudjiatmoko, Tjatur Rasa,F.S.,
Irianingsih,S.H., Miswati,Y., Azfirman, Prayitno,L., Hutasoit,S.,
Suryantana, Srihanto,E.A., Ma'arif,S., Mahawan,T., Indrayani,L.,
Hartawan,D.H.W., Diarmita,I.K., Hendrawati,F., Purmadjaja,B.,
Utami,W.S., Hadi,S., Andesfha,E., Rahardja,E., Daulay,R.S.D.,
Astuti,E.P., Syibli,M., Zenal,F.C., Hartaningsih,N., Schoonman,L.,
Wong,F., Durr,P. and McGrane,J.
TITLE Antigenic and genetic diversity of H5N1 highly pathogenic avian
influenza viruses isolated from poultry and live bird markets in
Indonesia between 2008 and 2014
JOURNAL Unpublished
REFERENCE 2 (bases 1 to 1701)
AUTHORS Wibawa,H., Dharmawan,R., Pudjiatmoko, Tjatur Rasa,F.S.,
Irianingsih,S.H., Miswati,Y., Azfirman, Prayitno,L., Hutasoit,S.,
Suryantana, Srihanto,E.A., Ma'arif,S., Mahawan,T., Indrayani,L.,
Hartawan,D.H.W., Diarmita,I.K., Hendrawati,F., Purmadjaja,B.,
Utami,W.S., Hadi,S., Andesfha,E., Rahardja,E., Daulay,R.S.D.,
Astuti,E.P., Syibli,M., Zenal,F.C., Hartaningsih,N., Schoonman,L.,
Wong,F., Durr,P. and McGrane,J.
TITLE Direct Submission
JOURNAL Submitted (03-FEB-2015) Disease Investigation Centre
Wates-Yogyakarta, Directorate General of Livestock and Animal
Health Services, The Indonesian Ministry of Agriculture, Jl.
Yogya-Wates KM 27, Wates, Yogyakarta 55612, Indonesia
COMMENT This virus isolate was sequenced on behalf of The Directorate
General of Livestock and Animal Health Services, The Indonesian
Ministry of Agriculture(DGLAHS-MOA).
Please acknowledge The Indonesian DGLAHS-MOA if the virus sequence
is used either in a publication or in reverse genetic and other
genetic engineering studies.

Assembly Method :: DNASTAR Lasergene v. 8.0
Sequencing Technology :: Sanger dideoxy sequencing
/isolation_source="swab environment; live bird market"
/note="passage details: E2"


I suspect that they assembled incorrectly, I'll look at this more closely later.
Here the evolution picture:
http://magictour.free.fr/idn15a5.GIF

 

[gsgs]

2015/03/10 lots of H7N9 from China
ftp://ftp.ncbi.nih.gov/genomes/INFLU...fluenza_na.dat

~670 genomes !

ok, I made the mutation pictures but it's tedious to reformat,comment,upload
is anyone interested anyway ?


differences from the bird-index:

http://magictour.free.fr/UPD79c.GIF

there must be a capital c in the link