swine flu sequences (thread from h5n1experts)

gsgs · Aug 18, 2010

----posted: 2009/06/05-------

please don't post to this thread, discussion to this other thread :
http://www.flutrackers.com/forum/showthread.php?t=101112&page=12
we may also open a discussion thread here, if there is interest

I collect here the data and analysis

the sequences had been published at genbank:
http://www.ncbi.nlm.nih.gov/genomes/FLU/SwineFlu.html

new sequences in mutations-format here:
http://www.h5n1experts.org/forum/showthread.php?t=831

Code:

108=   0+ 40+ 34+ 04+ 16+ 14+  0   sequences 26.April-02.May
315=   0+ 75+ 50+102+  8+ 28+ 52   sequences 03.May-09.May
298=   0+  0+  8+ 84+ 53+145+  8   sequences 10.May-16.May
309=  33+ 24+136+  8+  7+ 26+ 74   sequences 17.May-23.May
598=  21+  8+191+ 33+ 52+267+ 26   sequences 24.May-30.May
338=  14+ 41+ 69+  6+171+ 26+ 11   sequences 31.May-06.June
189=   0+ 10+ 16+ 74+ 77+ 11+  1   sequences 07.June-13.June
111=   1+ 15+ 37+  5+ 25+ 28+  0   sequences 14.June-20.June
523=   8+ 10+194+163+ 19+129+  0   sequences 21.June-27.June
209=   0+ 69+ 32+ 95+ 13+  0+  0   sequences 29.June-04.July
246=   0+ 29+ 25+121+ 63+  8+  0   sequences 05.July-11.July
211=   0+  7+108+ 87+  8+  1+  0   sequences 12.July-18.July
387=   0+ 51+100+175+  0+ 61+  0   sequences 19.July-25.July
228=   0+ 13+  5+  6+198+  6+  0   sequences 26.July-01.August
218=   0+  7+ 24+  0+167+ 16+  4   sequences 02.August-08.August
243=   0+113+103+  0+  0+ 26+  0   sequences 09.August-15.August
048=   0+  7+  8+ 24+004+  5+  0   sequences 16.August-22.August
269=   0+  8+ 12+249+  0+  0+  0   sequences 23.August-29.August
125=   0+  0+ 80+ 37+  0+  8+  0   sequences 30.August-05.September
1011=  0+  0+ 55+ 38+182+736+  0   sequences 06.September-12.September
 31=   0+  8+  7+ 16+  0+  0+  0   sequences 13.September-19.September
 33=  0+  0+ 33+  0+  0+  0+  0   sequences 20.September-26.September
390= 0,0,0,67,83,240,0   27.Sept.-03.Oct.
 81= 0,0,69,4,0,8,0  04.Oct.-10.Oct
 72= 0,0,35,37,0,0,0 11.Oct.-17.Oct
 35= 0,10,1,0,24,0,0 18.Oct.-24.Oct
306= 0,0,0,143,0,163,0  25.Oct.-31.Oct
746= 0,41,676,0,29,0,0  1.Nov.-7.Nov.
441= 0,0,274,120,31,16,0  8.Nov.-14.Nov.
1247=0,8,122,1083,33,1,0  15.Nov.-21.Nov.
 93= 0,90,3,0,0,0,0  22.Nov.-28.Nov.
 65= 0,21,1,37,0,6,0 29.Nov.-5.Dec.
1245=0,19,1,22,12,1191,0  6.Dec.-12.Dec.
121= 0,102,0,3,16,-,-  13.Dec.-19.Dec. 
158=0,63,16,73,6,0,0    20.Dec.-26.Dec.
166=0,34,7,108,17,-,-    27.Dec.-02.Jan.
 43=-,29,8,-,-,6,-   03.Jan.-09.Jan.
 38=-,16,-,16,-,6,-  10.Jan.-16.Jan.
144=-,-,6,36,80,22,-   17.Jan.-23.Jan.
471=-,416,-,1,-,46,8   24.Jan.-30.Jan.
156=-,131,-,24,1,-,-   31.Jan.-6.Feb.
 12=-,-,3,-,9,-,-    7.Feb.-13.Feb.
 13=-,5,-,2,4,2,-  14.Feb.-20.Feb.

(4848 sequences, xxxx segments , 1020 hosts , ~6.5M nucleotides )
[[genbank lists 4844 sequences, so there is an error of 4 here)

(6048 sequences until 30.September)

--------edit August 2010---------
(19559 sequences uploaded 26.April 2009 - 03.July 2009
to compare : there are ~130000 flu-sequences at genbank in total)
-------------------------------

file ******ae.13 from 26.Nov. , 1880 viruses, 13.9M nucleotides , AT-score=5651
http://magictour.free.fr/panflu/******ae.m1 (in mutations-format)

(11214 sequences until 31.December 2009)

all the newflu sequences from genbank 27.June in my format here:
http://easyurl.net/aff92
391K,compressed with gzip,630 viruses ,
149+30+16+19+14+12+10+10+21+15+13+173+148 from the 13 subgroups

old lists:
http://magictour.free.fr/panflu/swflb

main proteins here:
http://magictour.free.fr/panflu/swflbp[/QUOTE]

[from 27.April , to be updated]

from 30.April : http://magictour.free.fr/panflu/swrec1.12

from 01.May : http://magictour.free.fr/panflu/SWREC2.11

from 27.May : http://bit.ly/j7ij5

in a format which is easily aligned, 8 (partial) segments per virus,
computer-readable, background data
I think this is the best format for computer analysis

Mexican sequences and full genomes (14.May 2009):
http://magictour.free.fr/panflu/MEX13.11

---------edit August 2010----------
graphics:

you can see the 2 US-waves and the usual US-delay of ~6 months until sequences appear at genbank

gsgs · Aug 18, 2010

Re: swine flu sequences (thread from h5n1experts)

------posted 2009/06/05------

differences in promille to other selected genomes for each of the 8 segments.
Some segments may be partial only, zeros indicate non-available segments

updated 29.4.

Code:

 32 >A/California/04/2009-04-01/(H1N1)                   
  1:151,107,118,492,162,497, 66,308   A/Ck/Germany/n/1949(H10N7)
  2:153,135,117,497,162,498, 81,152   A/fowl/Dobson/1927(H7N7)
  3:153,250,116,549,164,  0, 79,151   A/Ck/Brescia/1902(H7N7)
  4:153,134,116,499,168,171, 90,153   A/FPV/Rostock/34(H7N1)
  5:150,131,116,500,164,168, 88,151   A/fowl/Rostock/45/1934(H7N1)
  6:148,124,118,501,157,463, 76,163   A/turkey/England/1963(H7N3)
  7:153,130, 80,365,157,485, 69,158   A/duck/Germany/1215/1973(H2N3)
  8:155,127, 93,369,155,482, 66,166   A/tern/South Africa/1961(H5N3)
  9:146,108,106,368,159,133, 72,160   A/Ck/Scotland/1959(H5N1)
 10:156,144,100,351,168,148, 91,162   A/human/China/GD02/06(H5N1)
 11:153,145,110,361,170,149, 88,158   A/Bar-h Gs/Qinghai/62/05(H5N1)
 12:160,138, 93,354,168,145, 90,174   A/duck/Shandong/093/2004(H5N1)
 13:153,133, 90,382,151,143, 76,301   A/duck/Taiwan/0526/72(H6N1)
 14:154,135, 95,383,151,142, 76,299   A/chicken/Taiwan/G2/87(H6N1)
 15:153,132, 73,376,164,434, 76,166   A/shearwater/Australia/1/1973(H6N5)
 16: 98,126, 96,463,164,435, 91,159   A/pintail/Alberta/49/2003(H12N5)
 17:103,121,  0,488,164,361, 92,150   A/mallard duck/ALB/581/1983(H4N4)
 18:114,180,139,451,166,357, 87,158   A/turkey/Ontario/6118/1968(H8N4)
 19:114,180,139,451,166,357, 87,158   A/turkey/Ontario/6118/1968(H8N4)
 20: 93,111,139,432,158,504, 92,163   A/turkey/Wisconsin/1/1966(H9N2)
 21:108,118,145,432,160,507, 94,163   A/turkey/Wisconsin/66(H9N2)
 22:112,114,140,429,166,508, 90,295   A/Turkey/California/189/66(H9N2)
 23: 92,100,123,500,158,490, 92,291   A/turkey/Oregon/1971(H7N3)
 24: 49, 60, 58,500,  0,  0,  0,  0   A/swine/Minnesota/SG-00241/2007(H1N1)
 25: 49, 50, 57, 62, 54,199,120, 50   A/swine/OH/511445/2007(H1N1)
 26: 49, 51, 57,500,  0,  0,  0,  0   A/swine/Illinois/SG-00244/2007(H1N1)
 27: 50, 50, 57, 63, 55,199,120, 54   A/swine/Ohio/24366/07(H1N1)
 28: 47, 49,  0, 64,  0,205,128,  0   A/swine/Ohio/C62006/06(H1N1)
 29: 48, 51, 58,500,  0,  0,  0,  0   A/swine/Minnesota/SG-00240/2007(H1N1)
 30: 46, 47, 46, 89, 44,201,124, 51   A/Iowa/CEID23/2005(H1N1)
 31: 34, 31, 44, 54, 36,201,119, 45   A/Wisconsin/10/98(H1N1)
 32:  0,  0,  0,  0,  0,  0,  0,  0   A/California/04/2009-04-01/(H1N1)
 33: 51, 53, 54,500,  0,  0,  0,  0   A/swine/Minnesota/SG-00238/2006(H1N1)
 34: 30, 36, 45, 49, 31,503,113, 41   A/Turkey/MO/24093/99(H1N2)
 35: 30, 34, 37,500,  0,  0,  0,  0   A/mallard duck/South Dakota/Sg-00125/2007(H3N2)
 36: 96,131, 67,479,164,443, 90,290   A/pintail/Alaska/779/2005(H3N8)
 37:153,130, 85,489,156,441, 62,300   A/duck/Chabarovsk/1610/1972(H3N8)
 38:156,107, 92,490,151,442, 70,164   A/Dk/UKR/1/1963(H3N8)
 39:150,120,119,495,150,448, 84,157   A/quail/Italy/1117/1965(H10N8)
 40:149,116,108,499,158,494, 75,162   A/duck/Czechoslovakia/1956(H4N6)
 41:148,113, 98,418,167,493, 74,166   A/duck/England/1956(H11N6)
 42:110,174,143,433,172,485, 96,297   A/duck/Memphis/546/1974(H11N9)
 43:101,122,143,387,164,496,114,152   A/pintail duck/ALB/189/1982(H6N6)
 44: 82,121,146,243,164,137, 97,146   A/pigeon/MN/1407/1981(H1N1)
 45: 83,123,142,242,167,136, 88,153   A/pintail duck/ALB/219/1977(H1N1)
 46: 83,123,142,242,167,136, 88,153   A/pintail duck/ALB/219/1977(H1N1)
 47: 80,118,121,240,168,136, 98,147   A/mallard duck/ALB/127/1977(H1N1)
 48: 98,118,129,241,160,138, 89,151   A/mallard duck/ALB/46/1977(H1N1)
 49: 92,121,123,242,172,145, 97,152   A/mallard duck/Tennessee/11464/1985(H1N1)
 50: 96,126,127,246,166,150, 92,151   A/mallard/Ohio/56/1999(H1N1)
 51: 96,126,126,246,166,150, 92,151   A/pintail/Ohio/25/1999(H1N1)
 52: 95,126,125,246,166,150, 93,151   A/green-winged teal/Ohio/72/1999(H1N1)
 53: 95,126,125,246,166,150, 92,150   A/mallard/Ohio/66/1999(H1N1)
 54:100,130, 94,251,164,151, 93,158   A/mallard/MD/170/2002(H1N1)
 55:100,131, 92,251,160,150, 91,158   A/mallard/MD/02-181/2002(H1N1)
 56:100,131, 92,251,161,150, 91,159   A/mallard/MD/382/2002(H1N1)
 57:100,130, 93,251,162,152, 92,159   A/mallard/MD/369/2002(H1N1)
 58:100,130, 93,251,162,152, 92,159   A/mallard/MD/390/2002(H1N1)
 59:101,131, 92,251,161,150, 91,160   A/mallard/MD/02-375/2002(H1N1)
 60:102,130, 92,252,162,151, 91,159   A/mallard/Maryland/350/2002(H1N1)
 61:101,131, 92,252,162,150, 91,159   A/mallard/MD/02-359/2002(H1N1)
 62:100,130, 92,251,160,151, 92,160   A/mallard/MD/161/2002(H1N1)
 63:100,130, 92,251,160,151, 91,160   A/mallard/MD/02-184/2002(H1N1)
 64:100,130, 92,251,160,150, 92,160   A/mallard/MD/163/2002(H1N1)
 65:101,131, 92,251,162,151, 92,159   A/mallard/MD/406/2002(H1N1)
 66:100,128, 95,249,161,152, 94,158   A/mallard/MD/168/2002(H1N1)
 67: 81,126, 92,250,166,150, 92,159   A/mallard/MD/403/2002(H1N1)
 68: 74,122, 77,243,161,148, 93,152   A/mallard/Ohio/171/1990(H1N1)
 69: 78,122, 75,243,167,146, 89,150   A/mallard duck/ALB/322/1988(H1N1)
 70: 73,127, 76,245,163,145, 97,293   A/turkey/SD/7034/1986(H1N1)
 71: 74,127, 76,243,165,145, 91,252   A/blue winged teal/LA/B228/1986(H1N1)
 72: 87,125, 92,242,160,154, 89,295   A/mallard/ALB/201/1998(H1N1)
 73: 99,120,125,248,171,156, 97,293   A/pintail duck/Alberta/210/2002(H1N1)
 74: 85,120,128,242,167,136, 90,290   A/mallard duck/ALB/965/1979(H1N1)
 75: 80,121,123,248,165,142, 95,293   A/green-winged teal/Ohio/430/1987(H1N1)
 76: 79,118, 72,242,163,139, 92,290   A/pintail duck/ALB/238/1979(H1N1)
 77: 88,132, 54,245,170,148, 92,295   A/blue-winged teal/Alberta/141/1992(H1N1)
 78:106,129, 94,248,171,158, 96,297   A/muscovy duck/New York/21211-5/2005(H1N1)
 79:106,121, 95,251,168,158, 96,294   A/swine/Saskatchewan/18789/02(H1N1)
 80: 96,127, 85,242,161,149, 90,294   A/duck/NJ/7717-70/1995(H1N1)
 81: 94,129, 78,245,157,201, 96,295   A/turkey/MO/21939/1987(H1N1)
 82:103,124, 81,246,163,152,103,152   A/quail/IN/38685/1993(H1N1)
 83: 60,129, 81,248,160,150, 92,156   A/black duck/Ohio/95/1993(H1N1)
 84: 60,130, 81,249,161,150, 92,152   A/mallard/Ohio/118/1993(H1N1)
 85:108,138, 80,250,160,150, 97,146   A/duck/NY/13152-13/1994(H1N1)
 86:158,128,125,246,158, 80, 50,171   A/swine/Germany/2/1981(H1N1)=1578
 87:158,136,132,255,156, 82, 43,179   A/swine/Virginia/670/1987(H1N1)
 88:158,136,131,253,155, 81, 44,179   A/swine/Virginia/671/1987(H1N1)
 89:170,149,147,258,166, 88, 51,188   A/Swine/Spain/50047/2003(H1N1)
 90:164,147,144,258,164, 80, 59,189   A/swine/Spain/51915/2003(H1N1)
 91:161,145,144,259,159, 80, 60,185   A/swine/Spain/53207/2004(H1N1)
 92:178,136,141,488,163,507, 22,188   A/swine/Hong Kong/5190/99(H3N2)
 93:153, 82,164,490,157,503,118,182   A/Russia/WO0200884/72(H3N2)
 94:159, 64,171,497,176,505,135,183   A/Texas/UR06-0356/2007(H3N2)
 95:148,106,165,366,154,510,116,164   A/Japan/305/57(H2N2)
 96:139,178,158,213,136,197,106,162   A/Alaska/1935(H1N1)
 97:146,177,157,215,150,193,112,157   A/Hickox/1940(H1N1)
 98:152,185,169,229,154,202,118,168   A/swine/Henan/01/06(H1N1)
 99:150,186,169,229,156,201,126,169   A/swine/Tianjin/01/04(H1N1)
100:165,191,172,234,157,216,126,179   A/Kansas/UR06-0068/2007(H1N1)
101:166,250,  0,238,  0,213,131,  0   A/swine/Ohio/K1130/06(H1N1)
102:168,250,  0,243,  0,215,132,  0   A/swine/Ohio/K1207/06(H1N1)
103:126,176,155,182,120,168, 88,143   A/Brevig Mission/1/1918(H1N1)
104:126,176,155,182,120,168, 88,143   A/Brevig Mission/1/1918(H1N1)
105:136,180,157,172,109,163,102,128   A/swine/Jamesburg/1942(H1N1)
106:137,182,156,175,112,158,106,132   A/swine/1931(H1N1)
107:137,182,156,175,112,158,106,132   A/Sw/1931(H1N1)
108:142,183,155,167,104,173,105,131   A/swine/Ohio/23/1935(H1N1)
109:146,192,173,131, 83,195,113,109   A/swine/Wisconsin/1/1957(H1N1)
110:149,190,172,123, 81,196,109,107   A/swine/Wisconsin/1/1961(H1N1)
111:153,192,172,120, 76,196,110,103   A/swine/Wisconsin/2/1966(H1N1)
112:157,189,175,121, 80,197,109, 98   A/swine/Wisconsin/1/1967(H1N1)
113:158,194,176,120, 83,197,111,106   A/swine/Wisconsin/2/1970(H1N1)
114:158,196,175,116, 75,199,104, 94   A/swine/Wisconsin/1/1971(H1N1)
115:160,195,179,121, 82,198,115, 89   A/swine/Illinois/1/1975(H1N1)
116:161,196,179,121, 82,198,115, 89   A/swine/Tennessee/1/1975(H1N1)
117:158,195,178,109, 71,199,110, 90   A/swine/Tennessee/19/1976(H1N1)
118:156,193,179,109, 72,197,113, 89   A/swine/Iowa/1/1976(H1N1)
119:155,195,178,109, 70,196,113, 87   A/swine/Tennessee/3/1976(H1N1)
120:155,196,178,109, 70,196,113, 87   A/swine/Tennessee/10/1976(H1N1)
121:155,195,179,109, 70,196,113, 87   A/swine/Tennessee/7/1976(H1N1)
122:158,192,178,117, 68,201,118, 88   A/swine/Tennessee/62/1977(H1N1)
123:160,192,178,116, 68,200,116, 91   A/swine/Tennessee/25/1977(H1N1)
124:159,192,178,119, 64,202,118, 95   A/swine/Tennessee/96/1977(H1N1)
125:160,192,179,119, 64,202,118, 95   A/swine/Iowa/100/1977(H1N1)
126:157,191,179,118, 67,201,115, 85   A/swine/Tennessee/61/1977(H1N1)
127:158,191,178,119, 68,196,111, 88   A/swine/Tennessee/79/1977(H1N1)
128:161,196,181,121, 75,197,112, 81   A/swine/Tennessee/11/1978(H1N1)
129:161,196,181,121, 75,198,112, 81   A/swine/Tennessee/9/1978(H1N1)
130:161,196,181,121, 75,197,112, 81   A/swine/Tennessee/10/1978(H1N1)
131:160,195,180,117, 74,196,110, 88   A/swine/Tennessee/64/1977(H1N1)
132:160,195,180,117, 74,196,110, 88   A/swine/Tennessee/65/1977(H1N1)
133:159,194,179,108, 71,199,111, 87   A/swine/Tennessee/17/1976(H1N1)
134:159,194,178,108, 71,199,111, 87   A/swine/Tennessee/15/1976(H1N1)
135:161,194,178,107, 76,198,112, 88   A/swine/Tennessee/86/1977(H1N1)
136:158,195,179,112, 72,198,111, 85   A/swine/Tennessee/3/1978(H1N1)
137:159,196,178,108, 72,199,115, 90   A/swine/Wisconsin/30747/1976(H1N1)
138:160,198,177,116, 76,205,112, 94   A/swine/Kyoto/3/1979(H1N1)
139:158,196,178,111, 72,199,115, 97   A/swine/Tennessee/10/1977(H1N1)
140:157,196,178,109, 74,199,106, 90   A/swine/Kentucky/1/1976(H1N1)
141:161,196,178,109, 76,200,110, 87   A/swine/Iowa/4/1976(H1N1)
142:160,193,178,114, 76,197,112, 90   A/swine/Iowa/1/1977(H1N1)
143:157,198,180,113, 78,201,115, 89   A/swine/Arizona/148/1977(H1N1)
144:157,198,180,113, 78,201,115, 89   A/swine/Tennessee/112/1977(H1N1)
145:157,198,180,113, 77,201,116, 89   A/swine/Tennessee/105/1977(H1N1)
146:157,198,180,113, 78,201,115, 89   A/swine/Tennessee/106/1977(H1N1)
147:157,198,180,113, 78,201,115, 88   A/swine/Tennessee/109/1977(H1N1)
148:157,198,180,114, 78,201,115, 88   A/swine/Tennessee/118/1977(H1N1)
149:160,194,177,109, 72,197,112, 87   A/swine/Minnesota/27/1976(H1N1)
150:160,194,177,109, 72,198,112, 89   A/swine/Minnesota/24/1975(H1N1)
151:163,194,176,109, 74,200,111, 89   A/swine/Tennessee/49/1977(H1N1)
152:161,197,177,111, 73,198,111, 90   A/swine/Tennessee/19/1977(H1N1)
153:161,197,177,111, 73,198,109, 90   A/swine/Tennessee/21/1977(H1N1)
154:162,197,177,111, 74,199,111, 90   A/swine/Tennessee/37/1977(H1N1)
155:162,197,177,112, 73,200,110, 89   A/swine/Tennessee/31/1977(H1N1)
156:163,196,178,114, 76,199,112, 88   A/swine/Tennessee/7/1978(H1N1)
157:159,197,177,105, 72,198,110, 91   A/swine/Nebraska/123/1977(H1N1)
158:157,192,176,111, 76,202,116, 92   A/swine/Tennessee/48/1977(H1N1)
159:159,192,178,108, 74,201,112, 89   A/swine/Tennessee/23/1976(H1N1)
160: 73, 44,182,130, 50,206,123,107   A/swine/Ontario/53518/03(H1N1)
161:173, 58,190,122, 70,209,130, 98   A/swine/Ontario/23866/04(H1N1)
162:173,219,175,115, 64,199,129, 89   A/swine/Ontario/57561/03(H1N1)
163:172,196,164,111, 78,201,129,102   A/swine/Alberta/56626/03(H1N1)
164:167,197,184, 71, 43,198,115, 56   A/swine/California/T9001707/1991(H1N1)
165:167,196,179, 72, 42,202,113, 52   A/turkey/IA/21089-3/1992(H1N1)
166:167,196,179, 71, 46,199,117, 54   A/swine/Iowa/24297/1991(H1N1)
167:165,196,180, 70, 47,197,117, 54   A/swine/Maryland/23239/1991(H1N1)
168:165,197,179, 78, 45,199,115, 58   A/swine/Iowa/17672/1988(H1N1)
169:164,196,180, 78, 49,197,114, 59   A/turkey/NC/19762/1988(H1N1)
170:164,194,181, 85, 65,206,110, 81   A/swine/Iowa/1/1987(H1N1)
171:163,193,179, 81, 62,200,113, 83   A/swine/Kansas/3228/1987(H1N1)
172:166,196,181, 79, 48,197,113, 81   A/swine/Iowa/31483/1988(H1N1)
173:165,195,180, 78, 64,194,114, 66   A/swine/Wisconsin/1915/1988(H1N1)
174:163,194,178, 81, 62,201,113, 82   A/swine/Kansas/3024/1987(H1N1)
175:166,195,180, 82, 62,200,116, 79   A/swine/Iowa/1/1985(H1N1)
176:166,195,181, 82, 62,201,116, 79   A/swine/Iowa/3/1985(H1N1)
177:166,195,181, 82, 62,201,116, 79   A/swine/Iowa/2/1985(H1N1)
178:164,196,184, 95, 54,202,110, 78   A/swine/Iowa/2/1987(H1N1)
179:164,195,178,104, 66,201,116, 72   A/swine/Wisconsin/11/1980(H1N1)
180:165,194,177,104, 68,201,117, 76   A/swine/Ontario/1/1981(H1N1)
181:164,193,178,105, 68,201,117, 73   A/swine/Ontario/7/1981(H1N1)
182:163,193,178,105, 68,201,119, 75   A/swine/Ontario/6/1981(H1N1)
183:164,194,177,105, 68,201,117, 73   A/swine/Ontario/2/1981(H1N1)
184:163,193,178,105, 68,201,117, 73   A/swine/Ontario/4/1981(H1N1)
185:165,193,177,105, 68,201,117, 73   A/swine/Ontario/3/1981(H1N1)
186:160,193,177,107, 63,202,113, 85   A/swine/Wisconsin/8/1980(H1N1)
187:159,196,177,102, 62,201,113, 87   A/swine/Wisconsin/661/1980(H1N1)
188:159,196,178,103, 62,201,113, 85   A/swine/Wisconsin/629/1980(H1N1)
189:159,196,177,103, 62,201,113, 85   A/swine/Wisconsin/641/1980(H1N1)
190:160,196,177,103, 62,201,113, 87   A/swine/Wisconsin/663/1980(H1N1)
191:165,191,179, 89, 66,201,120, 95   A/swine/Iowa/1/1986(H1N1)
192:162,196,177,102, 61,199,109, 90   A/swine/Minnesota/5892-7/1979(H1N1)
193:158,198,180,108, 77,202,113, 83   A/turkey/KS/4880/1980(H1N1)
194:158,198,181,108, 77,202,115, 82   A/chicken/PA/35154/1991(H1N1)
195:161,195,179,106, 75,201,113, 89   A/swine/Tennessee/8/1978(H1N1)
196:161,195,177,104, 76,202,113, 81   A/swine/Tennessee/4/1978(H1N1)
197:161,196,177,104, 76,199,113, 81   A/swine/Tennessee/2/1978(H1N1)
198:160,195,176,102, 76,201,113, 78   A/swine/Tennessee/82/1977(H1N1)
199:160,195,176,102, 76,201,113, 78   A/swine/Tennessee/88/1977(H1N1)
200:160,195,176,102, 76,200,113, 79   A/swine/Tennessee/84/1977(H1N1)
201:159,195,177,102, 76,201,114, 81   A/swine/Tennessee/5/1978(H1N1)
202:160,194,176,103, 76,201,113, 78   A/swine/Tennessee/87/1977(H1N1)

gsgs · Aug 18, 2010

Re: swine flu sequences (thread from h5n1experts)

---------posted: 2009/06/05--------------

closest other sequences in the 8 segments
(data from Jan.2009, segment2 maybe only Jan.2007)
columns are:

.difference in 1/100 percent
......#different nucleotides
.........length of common alignment
.............number in my list
.....................sequence name

Code:

   0    0 2280 6904 California/04/2009-04-01/(H1N1)

----PB2----------------------------------------------------------
 304   24  787 2897 Turkey/MO/24093/99(H1N2)
 306   69 2249 3703 mallard Dk/South Dakota/Sg-00127/07(H3N2)
 306   69 2249 3704 mallard Dk/South Dakota/Sg-00128/07
 307   69 2246 3702 pintail Dk/South Dakota/Sg-00126/07(H3N2)
 307   69 2247 3701 mallard Dk/South Dakota/Sg-00125/07(H3N2)
 321   50 1557 2887 Sw/Texas/4199-2/98(H3N2)
 333   52 1557 2888 Sw/Minnesota/9088-2/98(H3N2)
 333   52 1557 2895 Sw/Iowa/8548-1/98
 342   78 2280 3760 Sw/Korea/JNS06/04(H3N2)
 343   54 1573 2894 Wisconsin/10/98(H1N1)
 346   79 2280 3705 Sw/Minnesota/55551/00(H1N2)
--------PB1-----------------------------------------------------
 312   71 2271 5644 Wisconsin/10/98(H1N1)
 340   77 2259 5652 mallard Dk/South Dakota/Sg-00125/07(H3N2)
 351   80 2274 5656 Sw/Indiana/9K035/99(H1N2)
 365   83 2271 5638 Sw/Nebraska/209/98(H3N2)
 365   83 2271 5639 Sw/Iowa/533/99(H3N2)
 365   83 2271 5640 Sw/Iowa/569/99(H3N2)
 365   83 2271 5641 Sw/Minnesota/593/99(H3N2)
 369   84 2271 5657 Sw/Korea/CAN04/05(H3N2)
 369   84 2274 5675 Dk/NC/91347/01(H1N2)
 374   43 1149 4066 Sw/Minnesota/9088-2/98(H3N2)
 374   43 1149 4068 Sw/Iowa/8548-1/98
 374   85 2271 5668 Sw/Illinois/100085A/01(H1N2)
 374   85 2271 5670 Sw/Ohio/891/01(H1N2)
 378   86 2271 5654 Sw/Iowa/930/01(H1N2)
 378   86 2271 5682 Sw/Korea/CY04/07(H3N2)
 378   86 2271 5683 Sw/Korea/CY05/07(H3N2)
 382   44 1149 4067 Sw/Texas/4199-2/98(H3N2)
 383   87 2271 5658 Sw/Korea/CAS07/05(H3N2)
 383   87 2271 5659 Sw/Korea/CAS09/06(H3N2)
 383   87 2271 5690 Sw/Indiana/P12439/00(H1N2)
----------PA--------------------------------------------------------
 370   79 2130 4925 mallard duck/South Dakota/Sg-00128/2007
 370   79 2131 4923 pintail duck/South Dakota/Sg-00126/2007(H3N2)
 373   79 2117 4922 mallard duck/South Dakota/Sg-00125/2007(H3N2)
 381   79 2073 4924 mallard duck/South Dakota/Sg-00127/2007(H3N2)
 390   84 2151 2977 Swine/Nebraska/209/98 (H3N2)
 390   84 2151 2978 Swine/Iowa/533/99 (H3N2)
 390   84 2151 2979 Swine/Iowa/569/99 (H3N2)
 390   84 2151 2980 Swine/Minnesota/593/99 (H3N2)
 390   84 2151 3015 Swine/Illinois/100084/01 (H1N2)
 399   86 2151 3011 Swine/Minnesota/55551/00 (H1N2)
-----------HA-----------------------------------------------------
 470   80 1700  344 Swine/Indiana/P12439/00 (H1N2)
 482   82 1700  280 Swine/Indiana/9K035/99 (H1N2)
 500   85 1700  504 Turkey/MO/24093/99(H1N2)
 505   86 1700 2468 swine/Minnesota/1192/2001(H1N2)
 511   87 1700  339 Swine/Ohio/891/01(H1N2)
 517   88 1700  549 SW/MN/23124-T/01(H1N2)
 517   88 1700 2115 swine/Guangxi/17/2005(H1N2)
 529   90 1700  550 SW/MN/23124-S/01(H1N2)
 529   90 1700  552 SW/MN/16419/01(H1N2)
 535   91 1700  345 Swine/Illinois/100085A/01 (H1N2)
 542   56 1032  296 Wisconsin/10/98 (H1N1)
--------NP----------------------------------------------------------
 250   13  520 6925 Sw/Oklahoma/18717/99(H3N2)
 251   13  516 6921 Sw/Colorado/23619/99(H3N2)
 262   14  533 6922 Sw/Wisconsin/14094/99(H3N2)
 262   14  533 6924 Sw/Illinois/21587/99(H3N2)
 263   14  531 6923 Sw/Oklahoma/18089/99(H3N2)
 312   16  512 6926 Sw/NorthCarolina/16497/99(H3N2)
 316   31  980 6927 Turkey/MO/24093/99(H1N2)
 329   48 1457 6963 Sw/Iowa/533/99(H3N2)
 336   49 1457 6961 Sw/Indiana/P12439/00(H1N2)
 336   49 1457 6969 Sw/Korea/CY04/07(H3N2)
 336   49 1457 6970 Sw/Korea/CY05/07(H3N2)
 337   33  979 6928 Sw/Texas/4199-2/98(H3N2)
 337   33  979 6929 Sw/Iowa/8548-1/98
 339   19  560 6972 SW/NC/45319/99(H1N2)
 339   19  560 6973 SW/NC/17366/01(H1N2)
 339   19  560 6974 SW/CO/17871/01(H1N2)
 343   50 1457 6971 Sw/Korea/CY09/07(H3N2)
----------NA--------------------------------------------------------
 589   83 1409 1741 Sw/England/195852/92(H1N1)
 652   92 1409 1742 Sw/Germany/Vi5698/95(H1N1)
 712   98 1376 1746 Sw/Belgium/74/85(H1N1)
 751  101 1344 1773 Sw/Ille et Vilaine/1455/99(H1N1)
 753  105 1394 1772 Sw/Cotes d'Armor/1488/99(H1N1)
 754  106 1404 1749 Italy/1424-4/95(H1N1)
 765  108 1410 1737 Sw/Belgium/1/83(H1N1)
 777  104 1338 1777 Sw/Italy/1492/97(H1N1)
 786  103 1310 1778 Sw/Italy/1513-8/98(H1N1)
 787  111 1410 1739 turkey/France/87075/87(H1N1)
 787  111 1410 1788 Sw/Italy/53949/04(H1N1)
 787  111 1410 1789 Sw/Italy/65296/04(H1N1)
 794  112 1410 1738 Sw/Finistere/3616/84(H1N1)
 795  102 1282 1750 Sw/Italy/1424-3/95(H1N1)
 801  113 1410 1736 Sw/Lot/2979/82(H1N1)
 801  113 1410 1790 Sw/Spain/53207/04(H1N1)
 801  113 1410 1791 Sw/Italy/247578/04(H1N1)
 801  113 1410 1793 Sw/Spain/51915/03(H1N1)
 812  106 1305 1774 Cotes d'Armor/1121/00(H1N1)
 815  115 1410 1794 Sw/Virginia/671/1987(H1N1)
------------M--------------------------------------------------------
 230   22  955 2735 Sw/HK/5190/99(H3N2)
 230   22  955 2736 Sw/HK/5200/99(H3N2)
 230   22  955 2737 Sw/HK/5212/99(H3N2)
 261   25  955 2739 Sw/HK/1197/02(H3N2)
 261   25  955 2740 Sw/HK/1144/02(H3N2)
 272   26  955 2738 Sw/HK/9745/01(H3N2)
 272   26  955 2743 HK/1774/99(H3N2)
 293   28  955 2741 Sw/HK/7982/00(H3N2)
 314   30  955 2742 Sw/HK/9296/01(H3N2)
 345   33  955 2721 Sw/Leipzig/145/92(H3N2)
 366   35  955 2726 Sw/Cotes d'Armor/1482/99(H1N1)
 397   38  955 2722 wild boar/Germany/WS169/06(H3N2)
 397   38  955 2727 Sw/Italy/1521/98(H1N2)
----------NS--------------------------------------------------
 346   29  838 6427 Sw/Texas/4199-2/98(H3N2)
 346   29  838 6428 Sw/Minnesota/9088-2/98(H3N2)
 357   30  838 6429 Sw/Iowa/8548-1/98
 381   32  838 6444 Sw/Indiana/9K035/99(H1N2)
 395   33  835 6436 Sw/North Carolina/98225/01(H1N2)
 395   33  835 6437 Sw/Minnesota/55551/00(H1N2)
 395   33  835 6445 SW/MN/3327/00(H1N2)
 395   33  835 6453 SW/IN/14810-T/01(H1N2)
 395   33  835 6454 SW/IN/14810-S/01(H1N2)
 395   33  835 6455 Sw/Korea/CAS09/06(H3N2)
 407   34  835 6456 Sw/Korea/CAN04/05(H3N2)
 407   34  835 6457 Sw/Korea/CAS07/05(H3N2)
 407   34  835 6467 Sw/Korea/CAS08/05(H1N1)
 407   34  835 6506 Sw/Iowa/930/01(H1N2)
 417   35  838 6430 Sw/Nebraska/209/98(H3N2)
 417   35  838 6438 Turkey/MO/24093/99(H1N2)
 417   35  838 6483 turkey/OH/313053/04(H3N2)

gsgs · Aug 18, 2010

Re: swine flu sequences (thread from h5n1experts)

-------posted 2009/06/05-------------

viruses sorted by taxon
taxon,name,1st segment,gender,age,swab,isolation date, strain history,country,genbank ID

641501 , A/California/04/2009(H1N1) ,1,M,10,,01-Apr-2009, C2,USA: California state, FJ969516.1 GI:227977115
641807 , A/California/05/2009(H1N1) ,1,F,9,,30-Mar-2009, C1,USA: California state, FJ966955.1 GI:227831765
641808 , A/California/06/2009(H1N1) ,1,F,41,,16-Apr-2009, M1,USA: California state, FJ966963.1 GI:227831782
641809 , A/California/07/2009(H1N1) ,1,M,54,,09-Apr-2009, C1,USA: California state, FJ969530.1 GI:227977147
641810 , A/California/09/2009(H1N1) ,4,M,7,NP swab,15-Apr-2009, ORIGINAL,USA: California state, FJ966971.1 GI:227831800
641811 , A/Texas/04/2009(H1N1) ,1,M,16,,14-Apr-2009, X,USA: Texas state, FJ969525.1 GI:227977135
641812 , A/Texas/05/2009(H1N1) ,2,M,16,,15-Apr-2009, X,USA: Texas state, FJ969522.1 GI:227977129
642261 , A/California/08/2009(H1N1) ,4,F,16,,09-Apr-2009, E2,USA: California state, FJ971076.1 GI:228017757
642262 , A/California/10/2009(H1N1) ,4,F,,08-Apr-2009, ORIGINAL,USA: California state, FJ969511.1 GI:227977103
642263 , A/Kansas/03/2009(H1N1) ,4,F,48,,24-Apr-2009, ORIGINAL,USA: Kansas state, FJ969523.1 GI:227977131
642264 , A/New York/19/2009(H1N1) ,4,F,14,NP swab,2009, ORIGINAL,USA: New York state, FJ969509.1 GI:227977098
642265 , A/New York/20/2009(H1N1) ,4,F,15,,2009, ORIGINAL,USA: New York state, FJ969542.1 GI:227977175
642266 , A/Ohio/07/2009(H1N1) ,4,M,9,,24-Apr-2009, ORIGINAL,USA: Ohio state, FJ969521.1 GI:227977127
642494 , A/Regensburg/Germany/01/2009(H1N1) ,4,M,37,,27-Apr-2009, original,Germany: Bavaria, Regensburg, FJ974021.1 GI:228495369
642795 , A/Auckland/2/2009(H1N1) ,7,M,16,,24-Apr-2009, original,New Zealand: Auckland, FJ973554.1 GI:228481038
642796 , A/Auckland/3/2009(H1N1) ,6,M,16,,25-Apr-2009, original,New Zealand: Auckland, FJ973552.1 GI:228481033
642907 , A/Toronto/3141/2009(H1N1) ,4,M,28,NP swab,Apr-2009, original,Canada, FJ974026.1 GI:228551507
642908 , A/Toronto/3145/2009(H1N1) ,4,F,22,NP swab,Apr-2009, original,Canada, FJ974027.1 GI:228551509
642909 , A/Toronto/3146/2009(H1N1) ,4,F,22,NP swab,Apr-2009, original,Canada, FJ974028.1 GI:228551511
642910 , A/Toronto/3170/2009(H1N1) ,4,F,22,NP swab,Apr-2009, original,Canada, FJ974023.1 GI:228551501
642911 , A/Toronto/3178/2009(H1N1) ,4,M,29,NP swab,Apr-2009, original,Canada, FJ974025.1 GI:228551505
642912 , A/Toronto/3181/2009(H1N1) ,4,F,24,NP swab,Apr-2009, original,Canada, FJ974022.1 GI:228551499
642913 , A/Toronto/3184/2009(H1N1) ,4,F,22,NP swab,Apr-2009, original,Canada, FJ974024.1 GI:228551503
643212 , A/Netherlands/602/2009(H1N1),4,Human,NP swab,29-Apr-2009, ORIGINAL,Netherlands: Rotterdam, CY039527.1 GI:228860928
643410 , A/Switzerland/01/2009(H1N1) ,7,Homo sapiens,nasopharyngeal swab,28-Apr-2009, C1,Switzerland, FJ981646.1 GI:229302803

54 google-hits for "A/California/04/2009(H1N1)" on 2009-05-03,06:23 UTC

www.promedmail.org/pls/otn/f?p=2400:1001:4236182472951842::NO::F2400_P1001_BACK_PAGE,F2400
www.biohealthbase.org/GSearch/fluSt...fluenza+a+h1n1+sequences,+april+27,+2009.html
www.virology.ws/2009/04/29/swine-influenza-daily-update/
cdpc.dg.gov.cn/down.jsp?downID=206
thisbluemarble.com/showthread.php?t=12991
en.wikipedia.org/wiki/2009_swine_flu_outbreak_timeline
krishna.chodavarapu.com/2009/05/genome-of-killer-h1n1-virus-swine-flu.html
www.ncbi.nlm.nih.gov/nuccore/FJ966082
www.iayork.com/MysteryRays/2009/04/28/swine-flu-genome-sequences/
ja.pastebin.ca/1407768
http://www.humanitarian.net/university/arts/news/swineinfluenza_4282009.html
www.hugonews.com/
www.flutrackers.com/forum/showthread.php?t=101112
rosettasister.wordpress.com/2009/04/29/the-happy-trumpet/
www.sasayama.or.jp/wordpress/?p=1003
www.antsz.hu/portal/portal/ujinfluenza.html
brotedeinfluenza.org.mx/archives/177
www.goatrance.net/modules.php?file=index&name=MessageBoard&op=modload
blog.sina.com.cn/s/blog_5b78edc40100dpee.html~type=v5_one&label=rela_prevarticle
blog.163.com/caizhijun888@126/blog/static/2478855120094151354417/
koppology.blogspot.com/2009/04/swine-flu-phylogeny-part-ii.html
index.hu/kultur/korrektor/2009/04/30/mexikoi_natha/
blogs.yahoo.co.jp/astralaudiosound/archive/2009/04/30
www.wai.netzwerk-phoenix.net/index.php?option=com_content&view=article&id=79&Itemid=95
blog.dbcls.jp/portal/20090430.html
blog.goo.ne.jp/zuruzumu/e/371f1cd7f21cae1d9ebf86f476fca372
www.cnpsa.embrapa.br/?ids=Sb8p43b0o
www.zonegrippeaviaire.com/showthread.php?t=2560
mhs.blog.ui.ac.id/
www.hm.gov.hu/hirek/kozlemenyek/az_uj_influenza_a_virus_megjelenese
temibledani1lga.blogspot.com/2009/04/milenio20090503sd.html
203.157.229.8/webboard/question.php?id=344
forums.rusmedserv.com/showthread.php?p=730806
mx.invertia.com/noticias/noticia.aspx?idNoticia=200905011236_INF_473848
www.elsemanario.com.mx/news/news_display.php?story_id=19497
www.hiso.or.th/hiso/health_event/ghealth_event21.php
www.spko.moph.go.th/
www.madore.org/~david/weblog/
www.santelog.com/modules/connaissan...ai-dorsay-au-t?l?phone-pour-rassurer_1026.htm
home.biotec.or.th/NewsCenter/my_documents/my_files/DZ513_factsheet-H1N1.doc
slashdot.jp/~y_tambe/journal/474427
www.lpnh.go.th/group/index.php?action=dlattach;topic=334.0;attach=416
blog.hu/blogtags/filoz?fia

gsgs · Aug 18, 2010

Re: swine flu sequences (thread from h5n1experts)

-------posted 2009/06/05---------------
PB1-F2:

Code:

MEQEQDTPWTQ}TEHTNTQKRESGRQTQRLVHPSSTRLMDHYLRIMNQVGMHKQTVF}RLWLSLKNPTQEYLRIHALKQWKLFNKQG}      >A/California/04-cx/2009-04-01,10m
MEQEQDTPWTQSTEHTNIQKRGSGRQTQRLGHPSSTRLMDHYLRIMNQVDMHKQTVFWRPWLSLKNPTQGYLRIHALKQWKLFNKQGWIN}  H H1N1/  A/Wisconsin/10/98(H1N1)
MGQEQDTPWILSTGHISTQKREDGQQTPRLEHHNSTRLMDHCQKTMNQVVMPKQIVYWKQWLSLRSPTPVSLKTRVLKRWRLFSKHEWTS}  H H1N1/  A/Brevig Mission/18(H1N1)



 0 MEQEQDTPWTQSTEHTNIQKKENGRQTQRLGHPSSTRLMDHYLKIMNQVDMHKQTVSWKPWLSLKNPTQGYLRIHALKQWKLSNKQGWIN}  >A/swine/Minnesota/SG-00241/2007(H1N1)
 0 MEQEQDTPWTQSTEHTNIQKKGNGRQIQRLGHPSSIRLMDHYLKIMNQVDMHKQTVSWRPWLSLKNPTQGYLRIHALKQWKLSNKQGWIN}  >A/swine/OH/511445/2007(H1N1)
 0 MEQEQDTPWTQSTEHTNIQKKGNGRQIQRLGHPSSIRLMDHYLKIMNQVDMHKQTVSWRPWLSLRNPTQGYLRIHALKQWKLSNKQGWIN}  >A/swine/Illinois/SG-00244/2007(H1N1)
 0 MEQEQDTPWTQSTEHTNIQKKGNGRQIQRLGHPSSIRLMDHYLKIMNQVDMHKQTVSWRPWLSLKNPTQGYLRIHALKQWKLSNKQGWIN}  >A/swine/Ohio/24366/07(H1N1)
 0 MEQEQDTLWTQSTEHTNIQKKGNGRQTQRLGHPSSTRLMDHYLKIMNQVDMHKQTVSWRPWLSLKSPTQGYLRIHALKQWKLSNKQGWIN}  >A/swine/Ohio/C62006/06(H1N1)
 0 MEQEQDTPWTQSTEHTNTQKKGNGRQTQKLGHPSSTRLMDHYLRIMNQVDTHKQTVSWRPWLSLKNPTQGYLRIHALKQWKLSNKQGWIN}  >A/swine/Minnesota/SG-00240/2007(H1N1)
 0 MEQEQDTPWTQSTEHINIQKKGSGLQTQRLGHPSSTRLMDHYLRIMNQVDMHKQTVFWRPWLSLKNPTQGYLRIHALKQWKLFNKQGWIN}  >A/Iowa/CEID23/2005(H1N1)
 0 MEQEQDTPWTQSTEHTNIQKRGSGRQTQRLGHPSSTRLMDHYLRIMNQVDMHKQTVFWRPWLSLKNPTQGYLRIHALKQWKLFNKQGWIN}  >A/Wisconsin/10/98(H1N1)
 2 MEQEQDTPWTQ}TEHTNTQKRESGRQTQRLVHPSSTRLMDHYLRIMNQVGMHKQTVF}RLWLSLKNPTQEYLRIHALKQWKLFNKQG}IN}  >A/California/04/2009-04-01/(H1N1)
 0 MEQEQDTPWTQSTEHTNIQKKGNGRQTQRLGHPSSTRLMDHYLRIMNQVGMHKQTVSWRPWLSLKNPTQGYLRVHALKQWKLSNKQGWIN}  >A/swine/Minnesota/SG-00238/2006(H1N1)
 0 ------------------------------------------------------------ML-----------------------------  >A/Turkey/MO/24093/99(H1N2)
 0 MEQEQDTPWTQSTEHTNIQKKGSGRQTQRLGHPSSTRLMDHYLRIMNQVDMHKQTVFWRPWLSLKNPTQGYLRIHALKQWKLFNKQGWIN}  >A/mallard duck/South Dakota/Sg-00125/2007(H3N2)

gsgs · Aug 18, 2010

Re: swine flu sequences (thread from h5n1experts)

--------posted: 2009/06/05--------

my supposed index-strain , the virus which I consider the best candidate
for the original ancestor virus of all ****** . Presumably the virus
which jumped from swine to a human or (IMO less likely) which reassorted in a human

Code:

>A/swine-flu/index/2009-02-01(H1N1)
ATGGAGAGAATAAAAGAACTGAGAGATCTAATGTCGCAGTCCCGCACTCGCGAGATACTCACTAAGACCACTGTGGACCATATGGCCATAATCAAAAAGTACACATCAGGAAGGCAAGAGAAGAACCCCGCACTCAGAATGAAGTGGATGATGGCAATGAGATACCCAATTACAGCAGACAAGAGAATAATGGACATGATTCCAGAGAGGAATGAACAAGGACAAACCCTCTGGAGCAAAACAAACGATGCTGGATCAGACCGAGTGATGGTATCACCTCTGGCCGTAACATGGTGGAATAGGAATGGCCCAACAACAAGTACAGTTCATTACCCTAAGGTATATAAAACTTATTTCGAAAAGGTCGAAAGGTTGAAACATGGTACCTTCGGCCCTGTCCACTTCAGAAATCAAGTTAAAATAAGGAGGAGAGTTGATACAAACCCTGGCCATGCAGATCTCAGTGCCAAGGAGGCACAGGATGTGATTATGGAAGTTGTTTTCCCAAATGAAGTGGGGGCAAGAATACTGACATCAGAGTCACAGCTGGCAATAACAAAAGAGAAGAAAGAAGAGCTCCAGGATTGTAAAATTGCTCCCTTGATGGTGGCGTACATGCTAGAAAGAGAATTGGTCCGTAAAACAAGGTTTCTCCCAGTAGCCGGCGGAACAGGCAGTGTTTATATTGAAGTGTTGCACTTAACCCAAGGGACGTGCTGGGAGCAGATGTACACTCCAGGAGGAGAAGTGAGAAATGATGATGTTGACCAAAGTTTGATTATCGCTGCTAGAAACATAGTAAGAAGAGCAGCAGTGTCAGCAGACCCATTAGCATCTCTCTTGGAAATGTGCCACAGCACACAGATTGGAGGAGTAAGGATGGTGGACATCCTTAGACAGAATCCAACTGAGGAACAAGCCGTAGACATATGCAAGGCAGCAATAGGGTTGAGGATTAGCTCATCTTTCAGTTTTGGTGGGTTCACTTTCAAAAGGACAAGCGGATCATCAGTCAAGAAAGAAGAAGAAGTGCTAACGGGCAACCTCCAAACACTGAAAATAAGAGTACATGAAGGGTATGAAGAATTCACAATGGTTGGGAGAAGAGCAACAGCTATTCTCAGAAAGGCAACCAGGAGATTGATCCAGTTGATAGTAAGCGGGAGAGACGAGCAGTCAATTGCTGAGGCAATAATTGTGGCCATGGTATTCTCACAAGAGGATTGCATGATCAAGGCAGTTAGGGGCGATCTGAACTTTGTCAATAGGGCAAACCAGCGACTGAACCCCATGCACCAACTCTTGAGGCATTTCCAAAAAGATGCAAAAGTGCTTTTCCAGAACTGGGGAATTGAATCCATCGACAATGTGATGGGAATGATCGGAATACTGCCCGACATGACCCCAAGCACGGAGATGTCGCTGAGAGGGATAAGAGTCAGCAAAATGGGAGTAGATGAATACTCCAGCACGGAGAGAGTGGTAGTGAGTATTGACCGATTTTTAAGGGTTAGAGATCAAAGAGGGAACGTACTATTGTCTCCCGAAGAAGTCAGTGAAACGCAAGGAACTGAGAAGTTGACAATAACTTATTCGTCATCAATGATGTGGGAGATCAATGGCCCTGAGTCAGTGCTAGTCAACACTTATCAATGGATAATCAGGAACTGGGAAATTGTGAAAATTCAATGGTCACAAGATCCCACAATGTTATACAACAAAATGGAATTTGAACCATTTCAGTCTCTTGTCCCTAAGGCAACCAGAAGCCGGTACAGTGGATTCGTAAGGACACTGTTCCAGCAAATGCGGGATGTGCTTGGGACATTTGACACTGTCCAAATAATAAAACTTCTCCCCTTTGCTGCTGCTCCACCAGAACAGAGTAGGATGCAATTTTCCTCATTGACTGTGAATGTGAGAGGATCAGGGTTGAGGATACTGGTAAGAGGCAATTCTCCAGTATTCAATTACAACAAGGCAACCAAACGACTTACAGTTCTTGGAAAGGATGCAGGTGCATTGACTGAAGATCCAGATGAAGGCACATCTGGGGTGGAGTCTGCTGTCCTGAGAGGATTTCTCATTTTGGGCAAAGAAGACAAGAGATATGGCCCAGCATTAAGCATCAATGAACTGAGCAATCTTGCAAAAGGAGAGAAGGCTAATGTGCTAATTGGGCAAGGGGACGTAGTGTTGGTAATGAAACGAAAACGGGACTCTAGCATACTTACTGACAGCCAGACAGCGACCAAAAGAATTCGGATGGCCATCAATTAG
ATGGATGTCAATCCGACTCTACTTTTCCTAAAAATTCCAGCGCAAAATGCCATAAGCACCACATTCCCTTATACTGGAGATCCTCCATACAGCCATGGAACAGGAACAGGATACACCATGGACACAGTAAACAGAACACACCAATACTCAGAAAAGGGAAAGTGGACGACAAACACAGAGACTGGTGCACCCCAGCTCAACCCGATTGATGGACCACTACCTGAGGATAATGAACCAAGTGGGTATGCACAAACAGACTGTGTTCTAGAGGCTATGGCTTTCCTTGAAGAATCCCACCCAGGAATATTTGAGAATTCATGCCTTGAAACAATGGAAGTTGTTCAACAAACAAGGGTAGATAAACTAACTCAAGGTCGCCAGACTTATGATTGGACATTAAACAGAAATCAACCGGCAGCAACTGCATTGGCCAACACCATAGAAGTCTTTAGATCGAATGGCCTAACAGCTAATGAGTCAGGAAGGCTAATAGATTTCTTAAAGGATGTAATGGAATCAATGAACAAAGAGGAAATAGAGATAACAACCCACTTTCAAAGAAAAAGGAGAGTAAGAGACAACATGACCAAGAAGATGGTCACGCAAAGAACAATAGGGAAGAAAAAACAAAGACTGAATAAGAGAGGCTATCTAATAAGAGCACTGACATTAAATACGATGACCAAAGATGCAGAGAGAGGCAAGTTAAAAAGAAGGGCTATCGCAACACCTGGGATGCAGATTAGAGGTTTCGTATACTTTGTTGAAACTTTAGCTAGGAGCATTTGCGAAAAGCTTGAACAGTCTGGGCTCCCAGTAGGGGGCAATGAAAAGAAGGCCAAACTGGCAAATGTTGTGAGAAAGATGATGACTAATTCACAAGACACAGAGATTTCTTTCACAATCACTGGGGACAACACTAAGTGGAATGAAAATCAAAATCCTCGAATGTTCCTGGCGATGATTACATATATCACCAGAAATCAACCCGAGTGGTTCAGAAACATCCTGAGCATGGCACCCATAATGTTCTCAAACAAAATGGCAAGACTAGGGAAAGGGTACATGTTCGAGAGTAAAAGAATGAAGATTCGAACACAAATACCAGCAGAAATGCTAGCAAGCATTGACCTGAAGTACTTCAATGAATCAACAAAGAAGAAAATTGAGAAAATAAGGCCTCTTCTAATAGATGGCACAGCATCACTGAGTCCTGGGATGATGATGGGCATGTTCAACATGCTAAGTACGGTCTTGGGAGTCTCGATACTGAATCTTGGACAAAAGAAATACACCAAGACAATATACTGGTGGGATGGGCTCCAATCATCCGACGATTTTGCTCTCATAGTGAATGCACCAAACCATGAGGGAATACAAGCAGGAGTGGACAGATTCTACAGGACCTGCAAGTTAGTGGGAATCAACATGAGCAAAAAGAAGTCCTATATAAATAAGACAGGGACATTTGAATTCACAAGCTTTTTTTATCGCTATGGATTTGTGGCTAATTTTAGCATGGAGCTACCCAGCTTTGGAGTGTCTGGAGTAAATGAATCAGCTGACATGAGTATTGGAGTAACAGTGATAAAGAACAACATGATAAACAATGACCTTGGACCTGCAACGGCCCAGATGGCTCTTCAATTGTTCATCAAAGACTACAGATACACATATAGGTGCCATAGGGGAGACACACAAATTCAGACGAGAAGATCATTTGAGTTAAAGAAGCTGTGGGATCAAACCCAATCAAAGGTAGGGCTATTAGTATCAGATGGAGGACCAAACTTATACAATATACGGAATCTTCACATTCCTGAAGTCTGCTTAAAATGGGAGCTAATGGATGATGATTATCGGGGAAGACTTTGTAATCCCCTGAATCCCTTTGTCAGTCATAAAGAGATTGATTCTGTAAACAATGCTGTGGTAATGCCAGCCCATGGTCCAGCCAAAAGCATGGAATATGATGCCGTTGCAACTACACATTCCTGGATTCCCAAGAGGAATCGTTCTATTCTCAACACAAGCCAAAGGGGAATTCTTGAGGATGAACAGATGTACCAGAAGTGCTGCAATCTATTCGAGAAATTTTTCCCTAGCAGTTCATATAGGAGACCGGTTGGAATTTCTAGCATGGTGGAGGCCATGGTGTCTAGGGCCCGGATTGATGCCAGGGTCGACTTCGAGTCTGGACGGATCAAGAAAGAAGAGTTCTCTGAGATCATGAAGATCTGTTCCACCATTGAAGAACTCAGACGGCAAAAATAA
ATGGAAGACTTTGTGCGACAATGCTTCAATCCAATGATCGTCGAGCTTGCGGAAAAGGCAATGAAAGAATATGGGGAAGATCCGAAAATCGAAACTAACAAGTTTGCTGCAATATGCACACATTTGGAAGTTTGTTTCATGTATTCGGATTTCCATTTCATCGACGAACGGGGTGAATCAATAATTGTAGAATCTGGTGACCCGAATGCACTATTGAAGCACCGATTTGAGATAATTGAAGGAAGAGACCGAATCATGGCCTGGACAGTGGTGAACAGTATATGTAACACAACAGGGGTAGAGAAGCCTAAATTTCTTCCTGATTTGTATGATTACAAAGAGAACCGGTTCATTGAAATTGGAGTAACACGGAGGGAAGTCCACATATATTACCTAGAGAAAGCCAACAAAATAAAATCTGAGAAGACACACATTCACATCTTTTCATTCACTGGAGAGGAGATGGCCACCAAAGCGGACTACACCCTTGACGAAGAGAGCAGGGCAAGAATCAAAACTAGGCTTTTCACTATAAGACAAGAAATGGCCAGTAGGAGTCTATGGGATTCCTTTCGTCAGTCCGAAAGAGGCGAAGAGACAATTGAAGAAAAATTTGAGATTACAGGAACTATGCGCAAGCTTGCCGACCAAAGTCTCCCACCGAACTTCTCCAGCCTTGAAAACTTTAGAGCCTATGTAGATGGATTCGAGCCGAACGGCTGCATTGAGGGCAAGCTTTCCCAAATGTCAAAAGAAGTGAACGCCAAAATTGAACCATTCTTGAGGACGACACCACGCCCCCTCAGATTGCCTGATGGGCCTCTTTGCCATCAGCGGTCAAAGTTCCTGCTGATGGATGCTCTGAAATTAAGTATTGAAGACCCGAGTCACGAGGGGGAGGGAATACCACTATATGATGCAATCAAATGCATGAAGACATTCTTTGGCTGGAAAGAGCCTAACATAGTCAAACCACATGAGAAAGGCATAAATCCCAATTACCTCATGGCTTGGAAGCAGGTGCTAGCAGAGCTACAGGACATTGAAAATGAAGAGAAGATCCCAAGGACAAAGAACATGAAGAGAACAAGCCAATTGAAGTGGGCACTCGGTGAAAATATGGCACCAGAAAAAGTAGACTTTGATGACTGCAAAGATGTTGGAGACCTTAAACAGTATGACAGTGATGAGCCAGAGCCCAGATCTCTAGCAAGCTGGGTCCAAAATGAATTCAATAAGGCATGTGAATTGACTGATTCAAGCTGGATAGAACTTGATGAAATAGGAGAAGATGTTGCCCCGATTGAACATATCGCAAGCATGAGGAGGAACTATTTTACAGCAGAAGTGTCCCACTGCAGGGCTACTGAATACATAATGAAGGGAGTGTACATAAATACGGCCTTGCTCAATGCATCCTGTGCAGCCATGGATGACTTTCAGCTGATCCCAATGATAAGCAAATGTAGGACCAAAGAAGGAAGACGGAAAACAAACCTGTATGGGTTCATTATAAAAGGAAGGTCTCATTTGAGAAATGATACTGATGTGGTGAACTTTGTAAGTATGGAGTTCTCACTCACTGACCCGAGACTGGAGCCACACAAATGGGAAAAATACTGTGTTCTTGAAATAGGAGACATGCTCTTGAGGACTGCGATAGGCCAAGTGTCGAGGCCCATGTTCCTATATGTGAGAACCAATGGAACCTCCAAGATCAAGATGAAATGGGGCATGGAAATGAGGCGCTGCCTTCTTCAGTCTCTTCAGCAGATTGAGAGCATGATTGAGGCCGAGTCTTCTGTCAAAGAGAAAGACATGACCAAGGAATTCTTTGAAAACAAATCGGAAACATGGCCAATCGGAGAGTCACCCAGGGGAGTGGAGGAAGGCTCTATTGGGAAAGTGTGCAGGACCTTACTGGCAAAATCTGTATTCAACAGTCTATATGCGTCTCCACAACTTGAGGGGTTTTCGGCTGAATCGAGAAAATTGCTTCTCATTGTTCAGGCACTTAGGGACAACCTGGAACCTGGAACCTTCGATCTTGGGGGGCTATATGAAGCAATCGAGGAGTGCCTGATTAATGATCCCTGGGTTTTGCTTAATGCATCTTGGTTCAACTCCTTCCTCACACATGCACTGAAGTAG
ATGAAGGCAATACTAGTAGTTCTGCTATATACATTTGCAACCGCAAATGCAGACACATTATGTATAGGTTATCATGCGAACAATTCAACAGACACTGTAGACACAGTACTAGAAAAGAATGTAACAGTAACACACTCTGTTAACCTTCTAGAAGACAAGCATAACGGGAAACTATGCAAACTAAGAGGGGTAGCCCCATTGCATTTGGGTAAATGTAACATTGCTGGCTGGATCCTGGGAAATCCAGAGTGTGAATCACTCTCCACAGCAAGCTCATGGTCCTACATTGTGGAAACATCTAGTTCAGACAATGGAACGTGTTACCCAGGAGATTTCATCGATTATGAGGAGCTAAGAGAGCAATTGAGCTCAGTGTCATCATTTGAAAGGTTTGAGATATTCCCCAAGACAAGTTCATGGCCCAATCATGACTCGAACAAAGGTGTAACGGCAGCATGTCCTCATGCTGGAGCAAAAAGCTTCTACAAAAATTTAATATGGCTAGTTAAAAAAGGAAATTCATACCCAAAGCTCAGCAAATCCTACATTAATGATAAAGGGAAAGAAGTCCTCGTGCTATGGGGCATTCACCATCCATCTACTAGTGCTGACCAACAAAGTCTCTATCAGAATGCAGATGCATATGTTTTTGTGGGGTCATCAAGATACAGCAAGAAGTTCAAGCCGGAAATAGCAATAAGACCCAAAGTGAGGGATCAAGAAGGGAGAATGAACTATTACTGGACACTAGTAGAGCCGGGAGACAAAATAACATTCGAAGCAACTGGAAATCTAGTGGTACCGAGATATGCATTCGCAATGGAAAGAAATGCTGGATCTGGTATTATCATTTCAGATACACCAGTCCACGATTGCAATACAACTTGTCAGACACCCAAGGGTGCTATAAACACCAGCCTCCCATTTCAGAATATACATCCGATCACAATTGGAAAATGTCCAAAATATGTAAAAAGCACAAAATTGAGACTGGCCACAGGATTGAGGAATGTCCCGTCTATTCAATCTAGAGGCCTATTTGGGGCCATTGCCGGTTTCATTGAAGGGGGGTGGACAGGGATGGTAGATGGATGGTACGGTTATCACCATCAAAATGAGCAGGGGTCAGGATATGCAGCCGACCTGAAGAGCACACAGAATGCCATTGACGAGATTACTAACAAAGTAAATTCTGTTATTGAAAAGATGAATACACAGTTCACAGCAGTAGGTAAAGAGTTCAACCACCTGGAAAAAAGAATAGAGAATTTAAATAAAAAAGTTGATGATGGTTTCCTGGACATTTGGACTTACAATGCCGAACTGTTGGTTCTATTGGAAAATGAAAGAACTTTGGACTACCACGATTCAAATGTGAAGAACTTATATGAAAAGGTAAGAAGCCAGCTAAAAAACAATGCCAAGGAAATTGGAAACGGCTGCTTTGAATTTTACCACAAATGCGATAACACGTGCATGGAAAGTGTCAAAAATGGGACTTATGACTACCCAAAATACTCAGAGGAAGCAAAATTAAACAGAGAAGAAATAGATGGGGTAAAGCTGGAATCAACAAGGATTTACCAGATTTTGGCGATCTATTCAACTGTCGCCAGTTCATTGGTACTGGTAGTCTCCCTGGGGGCAATCAGTTTCTGGATGTGCTCTAATGGGTCTCTACAGTGTAGAATATGTATTTAA
ATGGCGTCTCAAGGCACCAAACGATCATATGAACAAATGGAGACTGGTGGGGAGCGCCAGGATGCCACAGAAATCAGAGCATCTGTCGGAAGAATGATTGGTGGAATCGGGAGATTCTACATCCAAATGTGCACTGAACTCAAACTCAGTGATTATGATGGACGACTAATCCAGAATAGCATAACAATAGAGAGGATGGTGCTTTCTGCTTTTGATGAGAGAAGAAATAAATACCTAGAAGAGCATCCCAGTGCTGGGAAGGACCCTAAGAAAACAGGAGGACCCATATATAGAAGAGTAGACGGAAAGTGGATGAGAGAACTCATCCTTTATGACAAAGAAGAAATAAGGAGAGTTTGGCGCCAAGCAAACAATGGCGAAGATGCAACAGCAGGTCTTACTCATATCATGATTTGGCATTCCAACCTGAATGATGCCACATATCAGAGAACAAGAGCGCTTGTTCGCACCGGAATGGATCCCAGAATGTGCTCTCTAATGCAAGGTTCAACACTTCCCAGAAGGTCTGGTGCCGCAGGTGCTGCGGTGAAAGGAGTTGGAACAATAGCAATGGAGTTAATCAGAATGATCAAACGTGGAATCAATGACCGAAATTTCTGGAGGGGTGAAAATGGACGAAGGACAAGGGTTGCTTATGAAAGAATGTGCAATATCCTCAAAGGAAAATTTCAAACAGCTGCCCAGAGGGCAATGATGGATCAAGTAAGAGAAAGTCGAAACCCAGGAAACGCTGAGATTGAAGACCTCATTTTCCTGGCACGGTCAGCACTCATTCTGAGGGGATCAGTTGCACATAAATCCTGCCTGCCTGCTTGTGTGTATGGGCTTGCAGTAGCAAGTGGGCATGACTTTGAAAGGGAAGGGTACTCACTGGTCGGGATAGACCCATTCAAATTACTCCAAAACAGCCAAGTGGTCAGCCTGATGAGACCAAATGAAAACCCAGCTCACAAGAGTCAATTGGTGTGGATGGCATGCCACTCTGCTGCATTTGAAGATTTAAGAGTATCAAGTTTCATAAGAGGAAAGAAAGTGATTCCAAGAGGAAAGCTTTCCACAAGAGGGGTCCAGATTGCTTCAAATGAGAATGTGGAAACCATGGACTCCAATACCCTGGAACTGAGAAGCAGATACTGGGCCATAAGGACCAGGAGTGGAGGAAATACCAATCAACAAAAGGCATCCGCAGGCCAGATCAGTGTGCAGCCTACATTCTCAGTGCAGCGGAATCTCCCTTTTGAAAGAGCAACCGTTATGGCAGCATTCAGCGGGAACAATGAAGGACGGACATCCGACATGCGAACAGAAGTTATAAGAATGATGGAAAGTGCAAAGCCAGAAGATTTGTCCTTCCAGGGGCGGGGAGTCTTCGAGCTCTCGGACGAAAAGGCAACGAACCCGATCGTGCCTTCCTTTGACATGAGTAATGAAGGGTCTTATTTCTTCGGAGACAATGCAGAGGAGTATGACAGTTGA
ATGAATCCAAACCAAAAGATAATAACCATTGGTTCGGTCTGTATGACAATTGGAATGGCTAACTTAATATTACAAATTGGAAACATAATCTCAATATGGATTAGCCACTCAATTCAACTTGGGAATCAAAATCAGATTGAAACATGCAATCAAAGCGTCATTACTTATGAAAACAACACTTGGGTAAATCAGACATATGTTAACATCAGCAACACCAACTTTGCTGCTGGACAGTCAGTGGTTTCCGTGAAATTAGCGGGCAATTCCTCTCTCTGCCCTGTTAGTGGATGGGCTATATACAGTAAAGACAACAGTGTAAGAATCGGTTCCAAGGGGGATGTGTTTGTCATAAGGGAACCATTCATATCATGCTCCCCCTTGGAATGCAGAACCTTCTTCTTGACTCAAGGGGCCTTGCTAAATGACAAACATTCCAATGGAACCATTAAAGACAGGAGCCCATATCGAACCCTAATGAGCTGTCCTATTGGTGAAGTTCCCTCTCCATACAACTCAAGATTTGAGTCAGTCGCTTGGTCAGCAAGTGCTTGTCATGATGGCATCAATTGGCTAACAATTGGAATTTCTGGCCCAGACAATGGGGCAGTGGCTGTGTTAAAGTACAACGGCATAATAACAGACACTATCAAGAGTTGGAGAAACAATATATTGAGAACACAAGAGTCTGAATGTGCATGTGTAAATGGTTCTTGCTTTACTGTAATGACCGATGGACCAAGTAATGGACAGGCCTCATACAAGATCTTCAGAATAGAAAAGGGAAAGATAGTCAAATCAGTCGAAATGAATGCCCCTAATTATCACTATGAGGAATGCTCCTGTTATCCTGATTCTAGTGAAATCACATGTGTGTGCAGGGATAACTGGCATGGCTCGAATCGACCGTGGGTGTCTTTCAACCAGAATCTGGAATATCAGATAGGATACATATGCAGTGGGATTTTCGGAGACAATCCACGCCCTAATGATAAGACAGGCAGTTGTGGTCCAGTATCGTCTAATGGAGCAAATGGAGTAAAAGGATTTTCATTCAAATACGGCAATGGTGTTTGGATAGGGAGAACTAAAAGCATTAGTTCAAGAAACGGTTTTGAGATGATTTGGGATCCGAACGGATGGACTGGGACAGACAATAACTTCTCAATAAAGCAAGATATCGTAGGAATAAATGAGTGGTCAGGATATAGCGGGAGTTTTGTTCAGCATCCAGAACTAACAGGGCTGGATTGTATAAGACCTTGCTTCTGGGTTGAACTAATCAGAGGGCGACCCAAAGAGAACACAATCTGGACTAGCGGGAGCAGCATATCCTTTTGTGGTGTAAACAGTGACACTGTGGGTTGGTCTTGGCCAGACGGTGCTGAGTTGCCATTTACCATTGACAAGTAA
ATGAGTCTTCTAACCGAGGTCGAAACGTACGTTCTTTCTATCATCCCGTCAGGCCCCCTCAAAGCCGAGATCGCGCAGAGACTGGAAAGTGTCTTTGCAGGAAAGAACACAGATCTTGAGGCTCTCATGGAATGGCTAAAGACAAGACCAATCTTGTCACCTCTGACTAAGGGAATTTTAGGATTTGTGTTCACGCTCACCGTGCCCAGTGAGCGAGGACTGCAGCGTAGACGCTTTGTCCAAAATGCCCTAAATGGGAATGGGGACCCGAACAACATGGATAGAGCAGTTAAACTATACAAGAAGCTCAAAAGAGAAATAACGTTCCATGGGGCCAAGGAGGTGTCACTAAGCTATTCAACTGGTGCACTTGCCAGTTGCATGGGCCTCATATACAACAGGATGGGAACAGTGACCACAGAAGCTGCTTTTGGTCTAGTGTGTGCCACTTGTGAACAGATTGCTGATTCACAGCATCGGTCTCACAGACAGATGGCTACTACCACCAATCCACTAATCAGGCATGAAAACAGAATGGTGCTGGCTAGCACTACGGCAAAGGCTATGGAACAGATGGCTGGATCGAGTGAACAGGCAGCGGAGGCCATGGAGGTTGCTAATCAGACTAGGCAGATGGTACATGCAATGAGAACTATTGGGACTCATCCTAGCTCCAGTGCTGGTCTGAAAGATGACCTTCTTGAAAATTTGCAGGCCTACCAGAAGCGAATGGGAGTGCAGATGCAGCGATTCAAGTGATCCTCTCGTCATTGCAGCAAATATCATTGGGATCTTGCACCTGATATTGTGGATTACTGATCGTCTTTTTTTCAAATGTATTTATCGTCGCTTTAAATACGGTTTGAAAAGAGGGCCTTCTACGGAAGGAGTGCCTGAGTCCATGAGGGAAGAATATCAACAGGAACAGCAGAGTGCTGTGGATGTTGACGATGGTCATTTTGTCAACATAGAGCTAGAGTAA
ATGGACTCCAACACCATGTCAAGCTTTCAGGTAGACTGTTTCCTTTGGCATATCCGCAAGCGATTTGCAGACAATGGATTGGGTGATGCCCCATTCCTTGATCGGCTCCGCCGAGATCAAAAGTCCTTAAAAGGAAGAGGCAACACCCTTGGCCTCGATATCGAAACAGCCACTCTTGTTGGGAAACAAATCGTGGAATGGATCTTGAAAGAGGAATCCAGCGAGACACTTAGAATGACAATTGCATCTGTACCTACTTCGCGCTACCTTTCTGACATGACCCTCGAGGAAATGTCACGAGACTGGTTCATGCTCATGCCTAGGCAAAAGATAATAGGCCCTCTTTGCGTGCGATTGGACCAGGCGATCATGGAAAAGAACATAGTACTGAAAGCGAACTTCAGTGTAATCTTTAACCGATTAGAGACCTTGATACTACTAAGGGCTTTCACTGAGGAGGGAGCAATAGTTGGAGAAATTTCACCATTACCTTCTCTTCCAGGACATACTTATGAGGATGTCAAAAATGCAGTTGGGGTCCTCATCGGAGGACTTGAATGGAATGGTAACACGGTTCGAGTCTCTGAAAATATACAGAGATTCGCTTGGAGAAACTGTGATGAGAATGGGAGACCTTCACTACCTCCAGAGCAGAAATGAAAAGTGGCGAGAGCAATTGGGACAGAAATTTGAGGAAATAAGGTGGTTAATTGAAGAAATGCGGCACAGATTGAAAGCGACAGAGAATAGTTTCGAACAAATAACATTTATGCAAGCCTTACAACTACTGCTTGAAGTAGAACAAGAGATAAGAGCTTTCTCGTTTCAGCTTATTTAATGATAA

and here the best ****** ancestor candidate from averaging the best available matches
in the 8 segments (1999-2002)

Code:

>A/******-match/1-2/07(H3N2)
XXXXXXXXXXXXXXXXXXCTAAGAGATCTAATGTCGCAGTCCCGCACTCGCGAGATACTCACTAAGACCACXGTGGACCATATGGCCATAATCAAAAAGTACACATCAGGAAGGCAAGAGAAGAACCCCGCACTCAGAATGAAGTGGATGATGGCAATGAAATACCCXATTACAGCAGACAAGAGAATAATGGACATGATTCCAGAGAGGAATGAACAAGGACAAACCCTXTGGAGCAAAACAAACGATGCTGGATCAGACCGCGTGATGGTATCACCTCTGGCCGTAACATGGTGGAATAGGAATGGCCCAACAACAAGTACAGTTCACTACCCTAAGGTATATAAAACTTATTTCGAAAAAGTCGAAAGGTTAAAACATGGTACCTTTGGCCCTGTCCACTTCAGAAATCAAGTTAAAATAAGAAGGAGAGTTGACACAAACCCTGGTCACGCAGATCTCAGTGCCAAGGAGGCACAGGATGTGATCATGGAAGTTGTTTTCCCAAATGAAGTGGGGGCAAGAATACTGACATCAGAGTCACAXCTGACAATAACAAAAGAGAAGAAAGAAGAGCTCCAGGATTGTAAAATTGCTCCCTTGATGGTGGCATACATGCTAGAAAGAGAGTTGGTCCGTAAAACGAGGTTTCTCCCXGTGGCTGGTGGAACAGGCAGTGTTTATATTGAGGTGCTGCACTTAACCCAGGGGACATGCTGGGAGCAGATGTACACTXCAGGAGGAGAAGTGAGAAATGATGATGTTGACCAAAGTTTXATTATCGCTGCTAGAAACATAGTAAGAAGAGCAGCAGTGTCAGCAGACCCATTAGCATCTCTCTTGGAAATGTGCCACAGCACXCAGATTGGAGGAATAAGGATGGTGGACATCCTTAGACAGAATCCAACXGAGGAACAAGCCGTAGACATATGCAAGGCAGCAATGGGGTTGAGGATTAGCTCATCTTTCAGCTTTGGTGGGTTCACTTTCAAAAGAACAAGCGGATCATCAGTCAAGAAAGAAGAAGAAXTGCTCACGGGCAACCTCCAAACACTGAAAATAAGAGTACATGAAGGATATGAAGAATTCACAATGGTCGGGAGAAGAGCAACAGCTATTCTCAGAAAGGCAACCAGGAGATTGATCCAGTTAATAGTAAGTGGGAGAGACGAGCAGTCAATTGCTGAGGCAATAATTGTGGCCATGGTATTTTCACAAGAGGATTGCATGATCAAGGCAGTTAGGGGCGATCTGAACTTTGTCAATAGGGCAAACCAGCGACTGAATCCCATGCACCAACTCTTGAGGCATTTCCAAAAAGATGCAAAAGXGCTTTTCCAGAACTGGGGAATTGAACCCATCGACAATGTGATGGGAATGATCGGAATATTGCCCGATATGACCCCAAGCACGGAGATGTCGCTGAGAGGGATAAGAXTCAGCAAAATGGGAGTAGATGAATACTCCAGCACGGAGAGAGTGGTAGTGAGCATTGACCGATTTTTGAGGGTTCGGGATCAACGAGGGAACGTACTATTGTCTCCCGAAGAGGTCAGCGAGACACAAGGXACGGAGAAGTTGACAATAACTTATTCGTCATCAATGATGTGGGAGATCAATGGTCCTXAGTCAGTGCTGGTCAACACTTATCAATGGATCATCAGGXACTGGGAAACTGTGAAAATTCAATGGTCXCAAGATCCCACGATGTTATXCAXCAAAATGGAATTTGAACCATTTCAGTCTCTTGTCCCTAAGGCAACCAGAAGCCXATACAGTGGATTCGTAAGGACACTGTTCCAGCAAATGCGGGATGTGCTTGGAACATTTGACACTGTCCAAATAATAAAACTTCTCCCCTTTGCTGCTGCTCCACCAGAACAGAGTAGGATGCAGTTTTCCTCATTGACTGTGAATGTGAGAGGATCAGGGXTGAGGATACTGGTAAGAGGCAATTCTCCAGTATTCAATTACAACAAXGCAACCAAAAGGCTTACAGTTCTTGGAAAGGATGCAGGTGCATTGACTGAAGATCCAGATGAAGGCACAGCTGGXGTGGAGTCTGCTGTCCTGAGAGGATTTCTCATTTTGGGCAAAGAAGACAAGAGATATGGCCCAGCATTAAGCATCAATGAACTGAGCAATCTTGCAAAAGGXGAGAAGGCTAATGTGCTAATTGGGCAAGGAGACGTAGTGTTGGTAATGAAACGGAAACGGGACTCTAGCATACTTACTGACAGCCAGACAGCGACCAAAAGAATTCGGXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXACTCTACTTTTXCTAAAXGTTCCAGCGCAAAATGCCATAAGCACCACATTCCCTTATACTGGAGATCCTCCATACAGCCATGGAACAGGAACAGGATACACCATGGACACAGTCAACAGAACACACCAATATTCAGAAAAXGGGAAGTGGACGACAAACACAGAGACTGGGGCACCCCAGCTCAACCCGATTGATGGACCACTACCTGAGGATAATGAACCAAGTGGATATGCACAAACAGACTGTGTTCTGGAGGCCATGGCTTTCCTTGAAGAATCCCACCCAGGGATATTTGAGAATTCATGCCTTGAAACAATGGAAGTTGTTCAACAAACAAGGGTGGATAAACTAACTCAAGGTCGCCAGACTTATGATTGGACATTXAACAGAAATCAACCGGCAGCAACTGCATTGGCCAACACCATAGAAGTTTTTAGATCGAATGGTCTAACAGCTAATGAGTCAGGAAGGCTAATAGATTTCCTAAAGGATGTAATGGAATCAATGGATAAAGAGGAAATAGAGATAACAACACACTTTCAAAGAAAAAGGAGAGTAAGAGACAACATGACCAAGAAGATGGTCACACAAAGAACAATAGGAAAGAAAAAACAAAGAGTGAATAAGAGAGGTTATCTAATAAGAGCACTGACATTGAATACGATGACCAAAGATGCAGAGAGAGGCAAATTAAAAAGAAGGGCTATCGCAACACCTGGGATGCAAATTAGAGGGTTCGTGTACTTTGTTGAAACTTTAGCTAGGAGCATTTGCGAAAAGCTTGAACAGTCTGGACTCCCAGTAGGGGGCAATGAAAAGAAXGCCAAATTGGCAAATGTTGTGAGAAAGATGATGACTAATTCACAAGACACAGAGCTTTCTTTCACAATCACTGGGGACAACACTAAGTGGAATGAAAATCAAAATCCTCGAATGTTCCTGGCGATGATTACATATATCACCAGAAATCAACCCGAGTGGTTCAGAAACATCCTGAGCATGGCACCCATAATGTTXTCAAACAAAATGGCAAGACTAGGAAAAGGGTACATGTTCGAGAGTAAAAGAATGAAGCTCCGAACACAAATACCAGCAGAAATGCTAGCAAGCATTGACCTGAAGTATTTCAATGAATCAACAAGGAAGAAAATTGAGAAAATAAGGCCTCTTCTAATAGATGGCACAGCATCATTGAGCCCTGGAATGATGATGGGCATGTTCAACATGCTAAGTACGGTTTTGGGAGTCTCGATACTGAATCTTGGACAAAAGAAATACACCAGGACAACATACTGGTGGGATGGXCTCCAATCCTCCGACGATTTTGCCCTCATAGTGAATGCACCAAATCATGAGGGAATACAAGCAGGAGTGGATAGATTCTACAGGACCTGCAAGTTAGTGGGAATCAACATGAGCAAAAAGAAGTCCTATATAAATAAGACAGGGACATTTGAATTCACAAGCTTTTTTTATCGCTATGGATTTGTGGCTAATTTTAGCATGGAGCTGCCCAGTTTTGGAGTGTCTGGAATAAATGAATCAGCTGATATGAGTATTGGAGTAACAGTGATAAAGAACAACATGATAAACAATGACCTTGGACCTGCAACAGCCCAGATGGCCCTTCAATTGTTCATCAAAGACTACAGATACACATATAGGTGCCATAGAGGAGACACACAAATTCAGACGAGAAGATCATTCGAGCTAAAGAAGCTGTGGGATCAAACCCAATCAAAGGCAGGACTATTAGTATCTGATGGAGGACCAAACTTATACAATATCCGGAATCTTCACATTCCTGAXGTCTGCTTAAAATGGGAGCTAATGGATGAGGATTATCGGGGAAGACTTTGTAATCCCCTGAAXCCCTTTGTCAGCCATAAAGAGATTGATTCTGTAAACAATGCTGTGGTGATGCCAGCCCATGGTCCAGCCAAAAGCATGGAATATGATGCCGTTGCAACTACACACTCCTGGATTCCCAAGAGGAACCGCTCTATTCTCAACACAAGCCAAAGGGGAATTCTTGAGGATGAACAGATGTACCAGAAGTGCTGCAACCTGTTCGAGAAATTTTTCCCTAGTAGTTCATACAGGAGACCGGTTGGAATTTCTAGCATGGTGGAGGCCATGGTGTCTAGGGCCCGGATTGATGCCAGGATXGACTTCGAGTCTGGACGGATTAAGAAAGAAGAGTTCTCTGAGATCATGAAGATCTGTTCCACCATTGAAGAACTCAGACGGCAAAAATAA
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTGATCGTCGAGCTTGCGGAAAAGGCAATGAAAGAATATGGAGAAGATCCGAAAATCGAAACTAACAAXTTCGCTGCAATATGCACACACTTGGAAGTCTGTTTCATGTATTCGGATTTCCATTTCATCGACGAACGGGGTGAATCAATAATTGTAGAATCTGGTGATCCAAATGCATTACTGAAGCACCGATTTGAGATAATTGAAGGAAGAGACCGAACCATGGCCTGGACAGTGGTGAACAGTATCTGCAACACCACAGGGGTAGAGAAGCCTAAATTTCTTCCGGATXTGTATGATTACAAAGAGAACCGATTCATTGAAATTGGAGTXACACGGAGGGAGGTCCACATATACTACCTAGAGAAAGCCAACAAAATAAAATCCGAGXAGACACACATTCACATTTTTTCATTCACTGGAGAGGAGATXGCCACCAAAGCGGACTACACXCTTGATGAAGAGAGCAGGGCAAGAATCAAAACCAGGCTTTTCACCATAAGACAAGAAATGGCCAGTAGGXGTCTATGGGATTCCTTTCGTCAGTCCGAGAGAGGCGAAGAGACAATTGAAGAAAGATTTGAAATTACAGGAACCATGCGCAGGCTTGCCGACCAAAGTCTXCCACCGAAXTTCTCXAGCCTTGAAAACTTTAXAGCCTATGTAGATGGATTCGAACCGAACGGXTGCATTGAGGGCAAGCTTTCTCAAATGTCAAAAGAAGTGAGCGCCAAAATTGAACCATTCTTGAAGACAACACCAXGCCCCCTCAGATTGCCTGATGGGCCTCCTTGCTCTCAGCGGTCAAAGTTCTTGCTGATGGATGCTCTGAAACTAAGTATTGAAGAXCCGAGTCATGAGGGGGAAGGGATACCACTATATGATGCAATCAAATGCATGAAGACATTTTTTGGCTGGAAAGAGCCTAACATAATCAAACCACATGAGAAAGGCATAAACCCCAATTACCTCCTGGCTTGGAAGCAGGTGCTAGCAGAGCTCCAGGACATTGAAAATGAAGAGAAGATCCCAAAXACAAAGAACATGAAGAGAACAAGCCAATTGAAGTGGGCACTCGGTGAGAATATGGCACCAGAGAAAGTAGACTTTGATGACTGCAAAGATGTTGGXGATCTTAAACAGTATGACAGCGATGAGCCAGAGCCCAGATCTCTAGCAAGCTGGGTCCAAAATGAATTCAATAAGGCATGTGAATTGACCGATTCAAGCTGGATAGAXCTTGATGAGATAGGAGAAGATGTTGCCCCGATTGAACACATCGCAAGCATGAGGAGGAACTATTTTACAGCAGAAGTXTCCCATTGCAGGGCTACTGAATACATAATGAAGGGAGTGXACATAAATACGGCTTTGCTCAATGCATCTTGTGCAGCCATGGATGACTTCCAGCTGATCCCAATGATAAGCAAATGTAGGACCAAAGAAGGAAGACGGAAAACAAATCTGTATGGGTTCATTATAAAAGGAAGGTCTCATTTGAGAAATGATACTGACGTGGTGAACTTTGTAAGTATGGAGTTCTCCCTCACTGACCCGAGACTGGAGCCACACAAATGGGAAAAGTACTGTGTTCTTGAAATAGGAGACATGCTCCTGAGGACXGCGATAGGCCAAGTGTCGAGGXCCATGTTCCTATATGTGAGAACCAATGGAACCTCCAAGATCAAGATGAAATGGGGCATGGAAATGAGGCGCTGCCTTCTTCAGTCTCTTCAGCAXATTGAGAGCATGATTGAGGCCGAGTCTTCTGTCAXAGAGAAAGACATGACCAAGGAATTCTTTGAAAACAAATCGGAAACATGGCCAATCGGAGAATCACCCAAAGGAGTGGAGGAAGGCTCTATTGGGAAAGTGTGCAGGACCTTACTGGCAAAATCTGTATTCAACAGTCTATACGCGTCTCCACAACTTGAGGGGTTTTCGGCXGAATCGAGAAAATTGCTTCTCATTGTTCAGGCACTTAGGGACAACCTGGAACCTGGAACCTTCGATCTTGGGGGXCTATATGAAGCAATXGAGGAGTGCCTGATTAATGAXCCCTGGGTTTTGCTTAATGCATCTTGGTTCAACTCCTTCCTCACACATGCACTGAAATAX
ATGAAGGCAATACTAGTAGTCXTGCTATATACATTTACAACCGCAAATGCAGACACATTATGTATAGGTTATCATGCGAACAATTCAACTGACACTGTAGACACAGTACTAGAAAAGAATGTAACAGTAACACACTCTGTTAACCTTCTAGAAGACAGGCATAACGGGAAACTATGTAAACTAAGAGGGGTAGCCCCATTGCATTTGGGTAAATGTAACATTGCTGGCTGGCTCCTGGGAAAXCCAGAGTGTGAATCACTCTTCACAGCAAGCTCATGGTCCTACATTGTGGAAACATCTAXTTCAGAXAATGGGACGTGTTACCCAGGAGATTTCATCAATTATGAAGAGCTAAGAGAGCAXTTGAGCTCAGTGTCATCATTTGAXAGATTTGAGATATTCCCCAAGACAAGTTCATGGCCCAATCATGACACGAACAGAGGTGTGACGGCXGCATGTCCTXATGCTGGAGCAAAXAGCTTCTACAGAAATTTAATATGGCTGGTCAAAAAAGXAAATTCATACCCAAAGXTCAGCAAATCCTAXATTAACAATAAGGXGAAGGAAGTCCTCGTGCTATGGGGCATTCACCATCCATCTACCAGTGCCGACCAACAAAGTCTCTACCAGAATGCAGATGCXTATGTTTTTGTGGGGTCATCAAGATACAGCAAGAAGTTCAAGCCAGAAATAGCAXCXAGACCCAAGGTGAGGGACCAAGCAGGGAGAATXAACTATTACTGGACACTAGTAGAGCCTGGAGACAAAATAACATTCGAAGCAACTGGAAATCTAGTGGTACCGAGATATGCCTTCGCAXTGXAAAGAAATTCTGGATCTGGTATTATCATTTCAGATACATCAGTCCACGATTGTAATACGACTTGTCAGACACCCAAGGGTGCTATAAACACCAGCCTCCCATTTCAXAATATACATCCAGTCACAATTGGAGAATGTCCAAAATATGTAAAAAGCACAAAATTGAGAATGGCCACAGGATTAAGGAATGTCCCGTCTATTCAATCTAGAGGCCTGTTTGGGGCCATTGCCGGCTTTATTGAGGGGGGATGGACAGGAATGATAGATGGATGGTACGGTTATCACCATCAAAATGAGCAGGGATCAGGATATGCAGCCGACCTGAAGAGCACACAGAATGCCATTGACGGGATCACTAACAAAGTAAATTCTGTTATTGAAAAGATGAACACACAATTCAXAGCAGTAGGTAAAGAGTTCAACCACCTGGAAAAAAGAATAGAGAATTTAAATAAAAAGGTTGATGATGGTTTTCTGGATATTTGGACTTACAATGCCGAACTGTTGXTTCTGTTGGAAAATGAAAGAACTTTGGATTACCACGATTCAAATGTGAAGAACTTATATGAAAAGGTAAGAAGCCAGCTAAAAAACAATGCCAXGGAAATTGGXAATGGCTGCTTTGAATTTTACCACAAATGTGATGACAXGTGCATGGAAAGCGTCAAAAATGGGACTTATGATTACCCAAAATACTCAGAGGAAGCAAAACTAAACAGAGAGGAAATAGATGGGGTAAAGCTGGAATCAACAAGGATTTACCAGATTTTGGCGATCTATTCAACTGTCGCCAGTTCATTGGTACTGGTAGTCTCCCTGGGGGCAATCAGTTTCTGGATGTGCTCTAATGGGTCTCTACAGTGXAGAATATGTATTTAA
ATGGCGTCTCAAGGCACCAAACGATCATATGAACAAATGGAGACTGGTGGGGAACGCCAGGATGCCACAGAAATCAGAGCATCTGTCGGAAGAATGATTGGTGGAATCGGGAGATTCTACATCCAAATGTGCACTGAACTCAAACTCAGTGACTATGAGGGACGACTAATCCAAAATAGCATAACAXTAGAGAGAATGGTGCTXTCTGCTTTTGATGAGAGAAGAAATAAATACCTAGAAGAGCATCCCAGTGCTGGGAAGGATCCTAAGAAAACTGGAGGACCCATATATAGAAGAGTAGACGGAAAGTGGATGAGAGAACTCATCCTTTATGACAAAGAXGAAATAAGGAGAGTTTGGCGCCAAGCAAACAATGGTGAAGATGCAACAGCTGGTCTTACTCATATCATGATTTGGCATTCCAATCTGAATGATGCCACXTATCAGAGAACAAGAGCGCTTGTTCGCACCGGAATGGATCCCAGAATGTGCTCTCTAATGCAAGGTTCAACACTTCCCAGAAGGTCTGGGGCCGCAGGTGCTGCAGTGAAAGGAGTTGGAACAATAGCAATGGAGTTAATCAGAATGATCAAACGTGGAATCAATGACCGAAACTTCTGGAGGGGTGAAAATGGACGAAGXACAAGGATTGCATATGAAAGAATGTGCAATATTCTCAAAGGAAAATTTCAGACAGCTGCCCAGAGAGCAATGATGGATCAAGTGAGAGAAAGTCGGAACCCAGGAAACGCTGAGATTGAAGATCTXATTTTCCTGGCACGGTCAGCACTTATTCTAAGGGGATCAGTTGCACATAAGTCTTGCCTGCCTGCTTGTGTGTATGGGCTTGCAGTAGCAAGTGGGCATGACTTTGAAAGGGAAGGGTATTCACTGGTCGGGATAGACCCATTTAAATTACTCCAAAACAGTCAAGTGTTCAGCCTGATAAGACCAAATGAAAACCCAGCTCACAAGAGTCAATTGGTGTGGATGGCATGCCACTCTGCTGCATTXGAGGATTTAAGAGTATCAAGTTTCATAAGAGGGAAXAAAGTGATTCCAAGAGGAAAGCTTTCCACAAGAGGGGTTCAGATTGCTTCAAATGAGAATGTGGAAGCCATGGACTCCAATACCCTAGAACTGAGAAGCAGATACTGGGCCATAAGGACCAGGAGTGGAGGAAATACCAATCAACAGAAGGCXTCCGCGGGCCAGATCAGTGTGCAACCTACATTCTCAGTGCAACGGAATCTCCCTTTTGAAAGAGCAACCGTTATGGCAGCTTTCAGCGGGAACAATGAAGGACGGACATCCGACATGCGAACAGAAXTTATAAGGATGATGGAAAGTGCAAAGCCAGAAGATTTGTCCTTCCAGGGGCGGGGAGTCTTCGAGCTCTCXGACGAAAAGGCAACGAGCCCGATCGTGCCTTCCTTTGACATGAGTAATGAAGGGTCTTATTTCTTCGXAGACAATGCAGAGGAGTATGACAGTTGA
ATGAATCCAAATCAGAAGATAATAACCATTXGTTCGATCTGTATGACAATTGGAATAXCCAGCTTGATATTACAAATTGGAAACATAATCTCAATATGGATTAGCCATTCAATTCAAATTGGGAATCAAAAXCAGXXTGXAACATGCAATCAXAGCGTCATTACTTACGAAAACAACACTTGGGTAAATCAGACATATGTTAXCATCAGCAACACCAAXTTTGTTGCTGAACAGXCAGTAGTTTCAXTGAAATTXGCGGGCAATTCCTCTCTCTGCCCTGTXAGTGGGTGGGCTATATACAGTAAAGATAATAGTGTAAGAATXGGTTCXAAGGGGGATGTGTTTGTCATAAGAGAGCCATTCATCTCATGXTCCCACTTGGAATGCAGAACCTTCTTCTTGACTCAAGGGGCCCTGCTGAATGAXAAACATTCTAATGGAACCATTAAAGACAGAAGCCCATATCGAACCCTGATGAGCTGTCCTXTTGGTGAAXTTCCCTCTCCATACAACTCAAGGTTXGAXTCAGTXGCTTGGTCAGCAAGTGCTTGCCATGATGGCAXCAGTTGGCTGACAATTGGAATTTCTGGCCCAGACAATGGGGCAGTGGCTGTGCTGAAATACAATGGCATAATAACAGACACTATCAAGAGTTGGAGAAACAACATATTGAGAACACAAGAGTCTGAATGTGXATGXGTGAATGGXTCTTGCTTTAXTGTAATGACCGATGGACCAAGTAATGGGCAXGCCTCATACAAGATCTTCAAXATAGAAAGGGGGAAAGTAGTCAAATCAXTXGAGXTGAATGCCCCTAATTATCACTACGAGGAATGCTCCTGTTATCCTGATTCTGGTGAAATCACATGTGTGTGCAGXGATAATTGGCATGGXTCGAATCGACCGTGGGTGTCTTTCAATCAGAATCTGGAGTATCAAATAGGATACATATGCAGTGGGATTTTCGGAGACAATCCGCGCCCTAATGATXGGACAGGCAGTTGTGGTCCAGTATCTTCTAATGGAGCAAATGGGGTAAAAGGGTTTTCXTTTAAATACGGCAATGGTGTTTGGATAGGGAGAACTAAAAGCACTAGTTCAAGGAGCGGTTTTGAGATGATTTGGGATCCAAACGGATGGACCGGAACAGACAATAAXTTCTCAXTAAAGCAAGATATCGTAGGXATAACTGATTGGTCAGGATATAGCGGGAGTTTTGTTCAGCATCCAGAACTGACCGGACTGGATTGTATGAGACCTTGCTTCTGGGTTGAAXTAATCAGAGGGCGACCCAAAGAGAACACAATCTGGACTAGTGGGAGCAGCATATCCTTTTGTGGTGTAAATAGTGACACTGTXGGTTGGTCTTGGCCAGACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXCTAACCGAGGTCGAAACGTACGTTCTTTCTATCATCCCXTCAGGCCCCCTCAAAGCCGAGATCGCGCAGAGACTGGAAGXTGTCTTTGCAGGXAAGAACACAGATCTTGAGGCTCTCATGGAGTGGCTAAAGACAAGACCAATCCTGTCACCTCTGACTAAGGGAATTTTAGGATTXGTGTTCACGCTCACCGTGCCCAGTGAGCGAGGACTGCAGCGTAGACGCTTTGTCCAAAATGCCCTAAATGGGAATGGGGACCCGAATAACATGGATAGAGCAGTCAAACTATACAAGAAGCTCAAAAGAGAAATAACXTTCCATGGGGCCAAGGAGGTGTCACTXAGCTACTCAACTGGTGCACTTGCCAGTTGCATGGGCCTCATATACAACAGAATGGGAACAGTGACCACAGAAGXXGCTTTTGGTCTAGTGTGTGCCACTTGTGAXCAGATTGCTGATTCACAGCATCGGTCTCACAGACAAATGGCXACTACCACCAACCCACTAATCAGGCATGAAAACAGAATGGTGCTGGCTAGCACXACAGCTAAGGCTATGGAACAGATGGCTGGATCGAGTGAACAGGCAGCGGAGGCXATGGAGGTTGCCAXTCAGXCTAGGCAXATGGTXCATGCXATGAGAACAATTGGGACTCATCCTAGCTCCAGTGCTGGTCTGAAAGATGACCTTCTTGAAAATTTGCAGGCCTACCAGAAACGGATGGGAGTGCAGATXCAGCGXTTCAAGTGATCCTCTCGTXATTGCAGCAAATATCATTGGGATCTTGCACCTGATATTGTGGATTXTTGATCGTCTTTTTTTCAAATGTATTTATCGTCGCXTTAAATACGGTTTGAAAAGAGGGCCTTCTACGGAAGGAGTGCCTGAGTCCATGAGGGAAGAATATCAACAGGAACAGCAGAGTGCTGTGGATGTTGACGATGGTCATTTTGTCAACATAGAGXXXXXXXXX
ATGGACTCCAACACTGTGTCAAGCTTTCAGGTAGACTGTTTCCTXTGGCATATCCGCAAACGGTTTGCAGACAATGGATTGGGTGATGCCCCATTCCTTGATCGGCTCCGCCGAGATCAAAAGTCCCTAAAAGGAAGAGGCAACACCCTTGGCCTCGACATCGAAACAGCCACTCTTGTTGGGAAACAAATTGTGGAGTGGATTTTGAAAGAGGAATCCAGCGAGACACTTAAGATGACCATTGCATCTGTACCTACTTCGCGCTACCTAGCTGACATGACCCTCGAGGAAATGTCACGAGACTGGTTCATGCTCATGCCTAGGCAAAAGATAATAGGCTCTCTTTGTGTGCGAATGGACCAGGCGATCATGGAAAAGAACATCATACTGAAAGCGAACTTCAGTGTGATXTTTAACCGATTAGAGACTTTGATACTACTAAGGGCTTTCACTGAGGAGGGAGCAATCGTTGGAGAAATTTCACCATTACCTTCTCTTCCAGGACATACTGATGAGGATGTCAAAAATGCAGTTGGGXTCCTCATCGGAGGACTTGAATGGAATGGTAACACGGTTCGAGTCTCTGAAAATCTACAGAGATTCGCTTGGAGAAACCGTAATGAGXATGGGAGACCTTCACTAXCTCCAGAGCAGAAATGAAAAGTGGCGAGAGCAATTGGGACAGAAATTTGAGGAAATAAGGTGGTTAATTGAAGAAGTGCGGCACAGATTGAAAGCGACAGAGAATAGTTTCGAACAAATAACATTTATGCAAGCCTTACAACTACTGCTTGAAGTAGAACAAGAGATAAGAACTTTCTCGTTTCAGCTTATTTAA------

my index of the 1998 "triple reassortant" swine virus which caused the outbreak in USA, 1998:

Code:

>A/Sw/Index/triple-reassortant/1998(H3N2)
ATGGAGAGAATAAAAGAACTAAGAGATCTAATGTCGCAGTCCCGCACTCGCGAGATACTCACTAAGACCACTGTGGACCATATGGCCATAATCAAAAAGTACACATCAGGAAGGCAAGAGAAGAACCCCGCACTCAGAATGAAGTGGATGATGGCAATGAAATACCCAATTACAGCAGACAAGAGAATAATGGACATGATTCCAGAGAGGAATGAACAAGGACAAACCCTCTGGAGCAAAACAAACGATGCTGGATCAGACCGCGTGATGGTATCACCTCTGGCCGTAACATGGTGGAATAGGAATGGCCCAACAACAAGTACAGTTCACTACCCTAAGGTATATAAAACTTATTTCGAAAAAGTCGAAAGGTTAAAACATGGTACCTTTGGCCCTGTCCACTTCAGAAATCAAGTTAAAATAAGAAGGAGAGTTGACACAAACCCTGGTCACGCAGATCTCAGTGCCAAGGAGGCACAGGATGTGATCATGGAAGTTGTTTTCCCAAATGAAGTGGGGGCAAGAATACTGACATCAGAGTCACAGCTGCCAATACCAAAAGAGAAGAAAGAAGAGCTCCAGGATTGTAAAATTGCTCCCTTGATGGTGGCATACATGCTAGAAAGAGAGTTGGTCCGTAAAACGAGGTTTCTCCCGGTGGCTGGTGGAACAGGCAGTGTTTATATTGAGGTGCTGCACTTAACCCAGGGGACATGCTGGGAGCAGATGTACACTCCAGGAGGAGAAGTGAGAAATGATGATGTTGACCAAAGTTTGATTATCGCTGCTAGAAACATAGTAAGAAGAGCAGCAGTGTCAGCAGACCCATTAGCATCTCTCTTGGAAATGTGCCACAGCACACAGATTGGAGGAATAAGGATGGTGGACATCCTTAGACAGAATCCAACAGAGGAACAAGCCGTAGACATATGCAAGGCAGCAATGGGGTTGAGGATTAGCTCATCTTTCAGTTTTGGTGGGTTCACTTTCAAAAGAACAAGCGGATCATCAGTCAAGAAAGAAGAAGAAGTGCTCACGGGCAACCTCCAAACACTGAAAATAAGAGTACATGAAGGATATGAAGAATTCACAATGGTCGGGAGAAGAGCAACAGCTATTCTCAGAAAGGCAACCAGGAGATTGATCCAGTTAATAGTAAGTGGGAGAGACGAGCAGTCAATTGCTGAGGCAATAATTGTGGCCATGGTATTTTCACAAGAGGATTGCATGATCAAGGCAGTTAGGGGCGATCTGAACTTTGTCAATAGGGCAAACCAGCGACTGAATCCCATGCACCAACTCTTGAGGCATTTCCAAAAAGATGCAAAAGTGCTTTTCCAGAACTGGGGAATTGAACCCATCGACAATGTGATGGGAATGATCGGAATATTGCCCGATATGACCCCAAGCACGGAGATGTCGCTGAGAGGGATAAGAGTCAGCAAAATGGGAGTAGATGAATACTCCAGCACGGAGAGAGTGGTAGTGAGCATTGACCGATTTTTGAGGGTTCGGGATCAACGAGGGAACGTACTATTGTCTCCCGAAGAGGTCAGCGAGACACAAGGAACGGAGAAGTTGACAATAACTTATTCGTCATCAATGATGTGGGAGATCAATGGTCCTGAGTCAGTGCTGGTCAACACTTATCAATGGATCATCAGGAACTGGGAAACTGTGAAAATTCAATGGTCACAAGATCCCACGATGTTATCCACCAAAATGGAATTCGAACCATTTCAGTCTCTTGTCCCTAAGGCAGCCAGAAGCCGATACAGTGGATTCGTAAGGACACTGTTCCAGCAAATGCGGGATGTGCTTGGAACATTTGACACTGTCCAAATAATAAAACTTCTCCCCTTTGCTGCTGCTCCACCAGAACAGAGTAGGATGCAGTTTTCCTCATTGACTGTGAATGTGAGAGGATCAGGGATGAGGATACTGGTAAGAGGCAATTCTCCAGTATTCAATTACAACAAGGCAACCAAAAGGCTTACAGTTCTTGGAAAGGATGCAGGTGCATTGACTGAAGATCCAGATGAAGGCACAGCTGGGGTGGAGTCTGCTGTCCTGAGAGGATTTCTCATTTTGGGCAAAGAAGACAAGAGATATGGCCCAGCATTAAGCATCAATGAACTGAGCAATCTTGCAAAAGGAGAGAAGGCTAATGTGCTAATTGGGCAAGGAGACGTAGTGTTGGTAATGAAACGGAAACGGGACTCTAGCATACTTACTGACAGCCAGACAGCGACCAAAAGAATTCGGATGGCCATCAATTAG
ATGGATGTCAATCCGACTCTACTTTTCCTAAAGGTTCCAGCGCAAAATGCCATAAGCACCACATTCCCTTATACTGGAGATCCTCCATACAGCCATGGAACAGGAACAGGATACACCATGGACACAGTCAACAGAACACACCAATATTCAGAAAAAGGGAAGTGGACGACAAACACAGAGACTGGGGCACCCCAGCTCAACCCGATTGATGGACCACTACCTGAGGATAATGAACCAAGTGGATATGCACAAACAGACTGTGTTCTGGAGGCCATGGCTTTCCTTGAAGAATCCCACCCAGGGATATTTGAGAATTCATGCCTTGAAACAATGGAAGTTGTTCAACAAACAAGGGTGGATAAACTAACTCAAGGTCGCCAGACTTATGATTGGACATTAAACAGAAATCAACCGGCAGCAACTGCATTGGCCAACACCATAGAAGTTTTTAGATCGAATGGTCTAACAGCTAATGAGTCAGGAAGGCTAATAGATTTCCTAAAGGATGTAATGGAATCAATGGATAAAGAGGAAATAGAGATAACAACACACTTTCAAAGAAAAAGGAGAGTAAGAGACAACATGACCAAGAAGATGGTCACACAAAGAACAATAGGAAAGAAAAAACAAAGAGTGAATAAGAGAGGTTATCTAATAAGAGCACTGACATTGAATACGATGACCAAAGATGCAGAGAGAGGCAAATTAAAAAGAAGGGCTATCGCAACACCTGGGATGCAAATTAGAGGGTTCGTGTACTTTGTTGAAACTTTAGCTAGGAGCATTTGCGAAAAGCTTGAACAGTCTGGACTCCCAGTAGGGGGCAATGAAAAGAAGGCCAAATTGGCAAATGTTGTGAGAAAGATGATGACTAATTCACAAGACACAGAGCTTTCTTTCACAATCACTGGGGACAACACTAAGTGGAATGAAAATCAAAATCCTCGAATGTTCCTGGCGATGATTACATATATCACCAGAAATCAACCCGAGTGGTTCAGAAACATCCTGAGCATGGCACCCATAATGTTCTCAAACAAAATGGCAAGACTAGGAAAAGGGTACATGTTCGAGAGTAAAAGAATGAAGCTCCGAACACAAATACCAGCAGAAATGCTAGCAAGCATTGACCTGAAGTATTTCAATGAATCAACAAGGAAGAAAATTGAGAAAATAAGGCCTCTTCTAATAGATGGCACAGCATCATTGAGCCCTGGAATGATGATGGGCATGTTCAACATGCTAAGTACGGTTTTGGGAGTCTCGATACTGAATCTTGGACAAAAGAAATACACCAGGACAACATACTGGTGGGATGGGCTCCAATCCTCCGACGATTTTGCCCTCATAGTGAATGCACCAAATCATGAGGGAATACAAGCAGGAGTGGATAGATTCTACAGGACCTGCAAGTTAGTGGGAATCAACATGAGCAAAAAGAAGTCCTATATAAATAAGACAGGGACATTTGAATTCACAAGCTTTTTTTATCGCTATGGATTTGTGGCTAATTTTAGCATGGAGCTGCCCAGTTTTGGAGTGTCTGGAATAAATGAATCAGCTGATATGAGCATTGGAGTAACAGTGATAAAGAACAACATGATAAACAATGACCTTGGACCTGCAACAGCCCAGATGGCCCTTCAATTGTTCATCAAAGACTACAGATACACATATAGGTGCCATAGAGGAGACACACAAATTCAGACGAGAAGATCATTCGAGCTAAAGAAGCTGTGGGATCAAACCCAATCAAAGGCAGGACTATTAGTATCTGATGGAGGACCAAACTTATACAATATCCGGAATCTTCACATTCCTGAAGTCTGCTTAAAATGGGAGCTAATGGATGAGGATTATCGGGGAAGACTTTGTAATCCCCTGAATCCCTTTGTCAGCCATAAAGAGATTGATTCTGTAAACAATGCTGTGGTGATGCCAGCCCATGGTCCAGCCAAAAGCATGGAATATGATGCCGTTGCAACTACACACTCCTGGATTCCCAAGAGGAACCGCTCTATTCTCAACACAAGCCAAAGGGGAATTCTTGAGGATGAACAGATGTACCAGAAGTGCTGCAACCTGTTCGAGAAATTTTTCCCTAGTAGTTCATACAGGAGACCGGTTGGAATTTCTAGCATGGTGGAGGCCATGGTGTCTAGGGCCCGGATTGATGCCAGGATTGACTTCGAGTCTGGACGGATTAAGAAAGAAGAGTTCTCTGAGATCATGAAGATCTGTTCCACCATTGAAGAACTCAGACGGCAAAAATAA
ATGGAAGACTTTGTGCGACAATGCTTCAATCCAATGATCGTCGAGCTTGCGGAAAAGGCAATGAAAGAATATGGAGAAGATCCGAAAATCGAAACTAACAAATTCGCTGCAATATGCACACACTTGGAAGTCTGTTTCATGTATTCGGATTTCCATTTCATCGACGAACGGGGTGAATCAATAATTGTAGAATCTGGTGATCCAAATGCATTACTGAAGCACCGATTTGAGATAATTGAAGGAAGAGACCGAACCATGGCCTGGACAGTGGTGAACAGTATCTGCAACACCACAGGGGTAGAGAAGCCTAAATTTCTTCCGGATTTGTATGATTACAAAGAGAACCGATTCATTGAAATTGGAGTGACACGGAGGGAGGTCCACATATACTACCTAGAGAAAGCCAACAAAATAAAATCCGAGAAGACACACATTCACATTTTTTCATTCACTGGAGAGGAGATGGCCACCAAAGCGGACTACACCCTTGATGAAGAGAGCAGGGCAAGAATCAAAACCAGGCTTTTCACCATAAGACAAGAAATGGCCAGTAGGGGTCTATGGGATTCCTTTCGTCAGTCCGAGAGAGGCGAAGAGACAATTGAAGAAAGATTTGAAATTACAGGAACCATGCGCAGGCTTGCCGACCAAAGTCTTCCACCGAACTTCTCCAGCCTTGAAAACTTTAGAGCCTATGTAGATGGATTCGAACCGAACGGCTGCATTGAGGGCAAGCTTTCTCAAATGTCAAAAGAAGTGAGCGCCAAAATTGAACCATTCTTGAAGACAACACCACGCCCCCTCAGATTGCCTGATGGGCCTCCTTGCTCTCAGCGGTCAAAGTTCTTGCTGATGGATGCTCTGAAACTAAGTATTGAAGACCCGAGTCATGAGGGGGAAGGGATACCACTATATGATGCAATCAAATGCATGAAGACATTTTTTGGCTGGAAAGAGCCTAACATAATCAAACCACATGAGAAAGGCATAAACCCCAATTACCTCCTGGCTTGGAAGCAGGTGCTAGCAGAGCTCCAGGACATTGAAAATGAAGAGAAGATCCCAAAGACAAAGAACATGAAGAGAACAAGCCAATTGAAGTGGGCACTCGGTGAGAATATGGCACCAGAGAAAGTAGACTTTGATGACTGCAAAGATGTTGGTGATCTTAAACAGTATGACAGCGATGAGCCAGAGCCCAGATCTCTAGCAAGCTGGGTCCAAAATGAATTCAATAAGGCATGTGAATTGACCGATTCAAGCTGGATAGAACTTGATGAGATAGGAGAAGATGTTGCCCCGATTGAACACATCGCAAGCATGAGGAGGAACTATTTTACAGCAGAAGTGCCCCATTGCAGGGCTACTGAATACATAATGAAGGGAGTGTACATAAATACGGCTTTGCTCAATGCATCTTGTGCAGCCATGGATGACTTCCAGCTGATCCCAATGATAAGCAAATGTAGGACCAAAGAAGGAAGACGGAAAACAAATCTGTATGGGTTCATTATAAAAGGAAGGTCTCATTTGAGAAATGATACTGACGTGGTGAACTTTGTAAGTATGGAGTTCTCCCTCACTGACCCGAGACTGGAGCCACACAAATGGGAAAAGTACTGTGTTCTTGAAATAGGAGACATGCTCCTGAGGACTGCGATAGGCCAAGTGTCGAGGCCCATGTTCCTATATGTGAGAACCAATGGAACCTCCAAGATCAAGATGAAATGGGGCATGGAAATGAGGCGCTGCCTTCTTCAGTCTCTTCAGCAGATTGAGAGCATGATTGAGGCCGAGTCTTCTGTCAAAGAGAAAGACATGACCAAGGAATTCTTTGAAAACAAATCGGAAACATGGCCAATCGGAGAATCACCCAAAGGAGTGGAGGAAGGCTCTATTGGGAAAGTGTGCAGGACCTTACTGGCAAAATCTGTATTCAACAGTCTATACGCGTCTCCACAACTTGAGGGGTTTTCGGCTGAATCGAGAAAATTGCTTCTCATTGTTCAGGCACTTAGGGACAACCTGGAACCTGGAACCTTCGATCTTGGGGGGCTATATGAAGCAATCGAGGAGTGCCTGATTAATGATCCCTGGGTTTTGCTTAATGCATCTTGGTTCAACTCCTTCCTCACACATGCACTGAAATAG
ATGAAGACTATCATTGCTTTGAGCTACATTTTATGTCTGGTTTTCGCTCAAAAACTTCCCGGAAATGACAACAGCACAGCAACGCTGTGCCTGGGACACCATGCAGTGCCAAACGGAACCCTAGTGAAAACAATCACGAATGATCAAATTGAAGTGACTAATGCTACTGAGCTGGTTCAGAGTTCCTCAACAGGTAGAATATGCGACAGTCCTCACCGAATCCTTGATGGAAAAAACTGCACATTGATAGATGCTCTACTAGGAGACCCTCATTGCGATGGCTTTCAAAATAAGGAATGGGACCTTTTTATTGAACGCAGCAAAGCTTACAGCAACTGTTACCCTTATGATGTGCCGGATTATTCCTCCCTTAGGTCACTAGTTGCCTCATCAGGCACCCTGGAGTTTACCAATGAAGACTTCAATTGGACTGGGGTCGCTCAGGATGGGGGAAGCTATTCTTGCAAAAGGGAATCTGTTAAAAGTTTCTTTAGTAGATTGAATTGGTTGCACAAATTAGAATACAAATATCCAGCACTGAACGTGACTATGCCAAACAATGACAAATTTGACAAATTGTACATTTGGGGGGTTCACCATCCGAGCACGGACAGTGAACAAACCAGCCTATATGTTCAAGCAATAGGGAGAGTCACAGTCTCTACCAAAAGTAGCCAACAAACTGTAATCCCGAACATCGGGTCCAGACCCTGGGTGAGGGGCATCTCCAGTAGAATAAGCATCTATTGGACAATAGTAAAACCGGGAGACATACTTTTGATTAGCAGCACAGGGAATCTAATTGCTCCTCGGGGTTACTTCAAAATACGAAATGGGAAAAGCTCAATAATGAGGTCAGATGCACCCATTGACAACTGCTATTCTGAATGCATCACTCCAAATGGAAGCATTCCCAATGACAAGCCTTTTCAAAATGTAAACAGGATCACATATGGGGCCTGTCCCAAATATGTTAAGCAAAAAACTCTGAAATTGGCAACAGGGATGCGGAATGTACCAGAGAAACAAACTAGAGGCATATTCGGCGCAATCGCAGGTTTCATAGAAAATGGTTGGGAGGGAATGGTAGACGGTTGGTACGGTTTCAGGCATCAAAATTCTGAGGGCACAGGACAAGCAGCAGATCTTAAAAGCACTCAAGCAGCAATCGATCAAGTCAACGGGAAATTGAATAGGTTAATCGAGAAAACGAACGAGAAATTCCATCAAATCGAAAAAGAATTTTCAGAAGTAGAAGGGAGAATTCAGGACCTCGAGAAATATGTTGAAGACACTAAAATAGATCTCTGGTCTTACAACGCGGAGCTCCTTGTTGCCCTGGAGAATCAACATACAATTGATCTAACTGACTCAGAAATGAACAAACTGTTTGAAAAAACAAGGAAGCAACTGAGGGAAAATGCTGAGGACATGGGCAATGGTTGTTTCAAAATATACCACAAATGTGACAATGCCTGCATAGGGTCAATCAGAAATGGAACTTATGACCATGATGTATACAGAGACGAAGCATTAAACAACCGGTTCCAGATCAAAGGTGTTGAGCTGAAATCAGGATACAAAGATTGGATCCTATGGATTTCCTTTGCCATATCATGCTTTTTGCTTTGTGTTGTTTTGCTGGGTTTCATCATGTGGGCCTGCCAAAAAGGCAACATTAGGTGCAACATTTGCATTTGA
ATGGCGTCTCAAGGCACCAAACGATCATATGAACAAATGGAGACTGGTGGGGAACGCCAGGATGCCACAGAAATCAGAGCATCTGTCGGAAGAATGATTGGTGGAATCGGGAGATTCTACATCCAAATGTGCACTGAACTCAAACTCAGTGACTATGAGGGACGACTAATCCAAAATAGCATAACAATAGAGAGAATGGTGCTCTCTGCTTTTGATGAGAGAAGAAATAAATACCTAGAAGAGCATCCCAGTGCTGGGAAGGATCCTAAGAAAACTGGAGGACCCATATATAGAAGAGTAGACGGAAAGTGGATGAGAGAACTCATCCTTTATGACAAAGAAGAAATAAGGAGAGTTTGGCGCCAAGCAAACAATGGTGAAGATGCAACAGCTGGTCTTACTCATATCATGATTTGGCATTCCAATCTGAATGATGCCACGTATCAGAGAACAAGAGCGCTTGTTCGCACCGGAATGGATCCCAGAATGTGCTCTCTAATGCAAGGTTCAACACTTCCCAGAAGGTCTGGGGCCGCAGGTGCTGCAGTGAAAGGAGTTGGAACAATAGCAATGGAGTTAATCAGAATGATCAAACGTGGAATCAATGACCGAAACTTCTGGAGGGGTGAAAATGGACGAAGAACAAGGATTGCATATGAAAGAATGTGCAATATTCTCAAAGGAAAATTTCAGACAGCTGCCCAGAGGGCAATGATGGATCAAGTGAGAGAAAGTCGGAACCCAGGAAACGCTGAGATTGAAGATCTCATTTTCCTGGCACGGTCAGCACTTATTCTAAGGGGATCAGTTGCACATAAGTCTTGCCTGCCTGCTTGTGTGTATGGGCTTGCAGTAGCAAGTGGGCATGACTTTGAAAGGGAAGGGTATTCACTGGTCGGGATAGACCCATTTAAATTACTCCAAAACAGTCAAGTGTTCAGCCTGATAAGACCAAATGAAAACCCAGCTCACAAGAGTCAATTGGTGTGGATGGCATGCCACTCTGCTGCATTTGAGGATTTAAGAGTATCAAGTTTCATAAGAGGGAAGAAAGTGATTCCAAGAGGAAAGCTTTCCACAAGAGGGGTTCAGATTGCTTCAAATGAGAATGTGGAAGCCATGGACTCCAATACCCTAGAACTGAGAAGCAGATACTGGGCCATAAGGACCAGGAGTGGAGGAAATACCAATCAACAGAAGGCATCCGCGGGCCAGATCAGTGTGCAACCTACATTCTCAGTGCAACGGAATCTCCCTTTTGAAAGAGCAACCGTTATGGCAGCTTTCAGCGGGAACAATGAAGGACGGACATCCGACATGCGAACAGAAGTTATAAGGATGATGGAAAGTGCAAAGCCAGAAGATTTGTCCTTCCAGGGGCGGGGAGTCTTCGAGCTCTCGGACGAAAAGGCAACGAGCCCGATCGTGCCTTCCTTTGACATGAGTAATGAAGGGTCTTATTTCTTCGGAGACAATGCAGAGGAGTATGACAGTTGA
ATGAATCCAAATCAAAAGATAATAACGATTGGCTCTGTTTCTCTCACTATTGCCACAATGTGCTTCCTTATGCAAATTGCCATCCTGGTAACTACTGTAACATTGCATTTCAAGCAATATGAATGCAACTCCCCCCCAAACAACCAAGTAATACTGTGTGAACCAACAATAATAGAAAGAAACATAACAGAGATAGTGTATCTGACCAACACCACCATAGAGAAGGAAATATGCCCCAAACTAGCAGAATACAGAAATTGGTCAAAGCCGCAATGTAAAATTACAGGATTTGCACCTTTTTCCAAGGACAATTCGATTAGGCTTTCCGCTGGTGGGGACATTTGGGTGACAAGAGAACCTTATGTGTCATGCGATCCTGACAAGTGTTATCAATTTGCCCTTGGACAGGGAACAACACTAAACAACAGGCATTCAAATGACACAGTACATGATAGGACCCCTTATCGAACCCTATTGATGAATGAGTTGGGTGTTCCATTTCATTTGGGAACCAAGCAAGTGTGCATAGCATGGTCCAGCTCAAGTTGTCACGATGGAAAAGCATGGCTGCATGTTTGTGTAACTGGGCATGATGAAAATGCAACTGCTAGCTTCATTTACGATGGGAGGCTTGTAGATAGTATTGGTTCATGGTCCAAAAAAATCCTCAGGACCCAGGAGTCGGAATGCGTTTGTATCAATGGAACTTGTACAGTAGTAATGACTGATGGGAGTGCTTCAGGAAGAGCTGATACTAAAATATTATTCATTGAGGAGGGGAAAATCGTTCATATTAGCCCATTGTTAGGAAGTGCTCAGCATGTCGAGGAGTGCTCCTGTTATCCTCGATATCCTGGTGTCAGATGTGTCTGCAGAGACAACTGGAAAGGCTCCAATAGGCCCATCGTAGATATAAATGTAAAGGATTATAGCATTGTTTCCAGTTATGTGTGCTCAGGACTTGTTGGAGACACACCCAGAAAAAACGACAGATCCAGCAGTAGCAATTGCCTGAATCCTAACAATGAGGAAGGGGGTCATGGAGTGAAAGGCTGGGCCTTTGATGATGGAAATGACGTGTGGATGGGAAGAACGATCAGCGAGAAGTTACGCTCAGGTTATGAAACCTTCAAAGTCATTGAAGGCTGGTCCAAACCTAACTCCAAATTGCAGATAAATAGGCAAGTCATAGTTGACAGAGGTGATAGGTCCGGTTATTCTGGCATTTTCTCTGTTGAAGGCAAAAGCTGCATCAATCGGTGCTTTTATGTGGAGTTGATAAGGGGAAGGAAACAGGAAACTGAAGTCTGGTGGACCTCAAACAGTATTGTTGTGTTTTGTGGCACCTCAGGTACATATGGAACAGGCTCATGGCCTGATGGGGCGGACATCAATCTCATGCCTATATAA
ATGAGTCTTCTAACCGAGGTCGAAACGTATGTTCTCTCTATCGTTCCGTCAGGCCCCCTCAAAGCCGAGATAGCACAGAGACTCGAAGACGTTTTTGCAGGGAAAAACACCGATCTTGAGGCACTCATGGAATGGCTAAAGACAAGACCAATCCTGTCACCTCTGACTAAGGGGATTTTAGGATTTGTGTTCACGCTCACCGTGCCCAGTGAGCGAGGACTGCAGCGTAGACGCTTTGTCCAGAATGCCCTCAATGGGAATGGTGACCCGAACAACATGGACAAAGCGGTCAAACTGTACAGGAAACTTAAAAGGGAAATAACATTCCATGGGGCCAAAGAAGTAGCGCTCAGTTACTCTGCTGGTGCACTTGCCAGTTGCATGGGCCTCATATACAACAGAATGGGGACTGTCACCACTGAGGTGGCCTTTGGTCTAGTATGCGCAACCTGTGAACAGATTGCTGATTCCCAGCATCGATCTCATAGACAAATGGTGACAACAACCAATCCACTAATCAGGCACGAGAACAGAATGGTAATAGCCAGCACAACAGCTAAAGCCATGGAACAAATGGCTGGATCAAGCGAACAAGCAGCAGAGGCTATGGAGGTTGCCAGCCAGGCTAGACAAATGGTACAGGCAATGAGAACAATTGGGACTCACCCTAGTTCCAGCGCTGGTCTAAAAGATGATCTTCTTGAAAATTTACAGGCCTATCAGAAACGGATGGGAGTGCAAATGCAACGATTCAAGTGATCCTCTCATTGCTGCCGCAAGCATCATTGGGATTTTGCACCTGATATTGTGGATTCTTGATCGTCTTTTTTTCAAATGCATTTACCGTCGCTTTAAATACGGTCTGAAAAGAGGGCCTTCTACGGAAGGAGTGCCGGAGTCCATGAGGGAAGAATATCGACAGAAACAGCAGAGTGCTGTGGATGTTGACGATGGTCATTTTGTCAACATAGTGCTAGAGTAA
ATGGACTCCAACACTGTGTCAAGCTTTCAGGTAGACTGTTTCCTTTGGCATATCCGCAAACGGTTTGCAGACAATGGATTGGGTGATGCCCCATTCCTTGATCGGCTCCGCCGAGATCAAAAGTCCCTAAAAGGAAGAGGCAACACCCTTGGCCTCGACATCGAAACAGCCACTCTTGTTGGGAAACAAATTGTGGAGTGGATTTTGAAAGAGGAATCCAGCGAGACACTTAAGATGACCATTGCATCTGTACCTACTTCGCGCTACCTAGCTGACATGACCCTCGAGGAAATGTCACGAGACTGGTTCATGCTCATGCCTAGGCAAAAGATAATAGGCTCTCTTTGTGTGCGAATGGACCAGGCGATCATGGAAAAGAACATCATACTGAAAGCGAACTTCAGTGTGATCTTTAACCGATTAGAGACTTTGATACTACTAAGGGCTTTCACTGAGGAGGGAGCAATCGTTGGAGAAATTTCACCATTACCTTCTCTTCCAGGACATACTGATGAGGATGTCAAAAATGCAGTTGGGGTCCTCATCGGAGGACTTGAATGGAATGGTAACACGGTTCGAGTCTCTGAAAATCTACAGAGATTCGCTTGGAGAAACCGTAATGAGGATGGGAGACCTTCACTACCTCCAGAGCAGAAATGAAAAGTGGCGAGAGCAATTGGGACAGAAATTTGAGGAAATAAGGTGGTTAATTGAAGAAGTGCGGCACAGATTGAAAGCGACAGAGAATAGTTTCGAACAAATAACATTTATGCAAGCCTTACAACTACTGCTTGAAGTAGAACAAGAGATAAGAACTTTCTCGTTTCAGCTTATTTAATGATAA

Code:

 55 >A/******/index/2009-02-01(H1N1)              
 41: 33, 30, 44, 52, 36,201,119, 43   A/Wisconsin/10/98(H1N1)
 47: 29, 31, 33,486, 29,496,115, 34   A/Sw/Index/triple-reassortant/1998(H3N2)
 48: 32, 37, 43,500, 33,498,123, 34   A/Swine/Texas/4199-2/98(H3N2)
 49: 29, 33, 35,483, 30,497,116, 33   A/mallard/SD/Sg-00125/2007/09/19(H3N2)
 52: 29, 36, 43, 47, 31,497,110, 41   A/Turkey/MO/24093/99(H1N2)
 54: 50, 40, 59, 52, 36,101, 56, 39   A/******-match/1-2/07(H3N2)
 61:158,127,125,245,158, 80, 49,166   A/swine/Germany/2/1981(H1N1)=1578

gsgs · Aug 18, 2010

Re: swine flu sequences (thread from h5n1experts)

------posted: 2009/06/05------------

53 viruses, 4 new from Spain:

Code:

                                              001111222 0000112 00011 00000000000000000111111111 000000011111 00000000001 0000000 0000 
                                              442378001 0489770 55679 00111122235667889000012456 122336701112 02333477990 0144566 3477 
                                              281057796 2521053 68748 23233401960455799000178069 389696521244 78112048244 1009201 7548 
                                              018852033 8055183 18016 27801579867086316156232839 228569198338 53562826054 5939973 7485 
-codon-position------------------------------- 1     2  1     2   11  112121  1  11    2 11 11 1   12  1 21    1 11 1 2    111111 2112 
---Index--------------------------------------AGAGTTCGG CTCCAGG AATAG CGTACCGCTGTGTGTGCGGAGGGCGT CAGATCGACGGG AATGAAAGAAA TACGGGC AGCA 
  1 >4;A/Pais Vasco/GP20/2009-04-26           --------- ------- ----- --.....T..C..........----- ........T... ------..... .G..... .... 
  2 >7;A/Italy/01/2009/04/28                  --------- ------- ----- -------------------------- ------------ ----------- ------- ---- 
  3 >4;A/Texas/06/2009/04/23                  --------- ------- ----- .....................A..A. .......G.... ........... ....A.A ...G 
  4 >2;A/Texas/05/2009/04/15                  --------- .C..... C.... .....................A..A. ............ ........... ....A.. ...G 
  5 >4;A/Texas/04/2009/04/14                  --------- ------- ----- .....................A..A. ------------ ----------- -...A.. ---- 
  6 >1;A/Texas/04/2009/04/14                  ...A..... .C..... C.... .....................A..A. ............ ........... ....A.. ...G 
  7 >2;A/Texas/04/2009/04/14                  --------- .C..... C.... .....................A..A. ............ ........... -...A.. ---- 
  8 >4;A/Toronto/3178/2009/04/                --------- ------- ----- --.........--------------- ------------ ----------- ------- ---- 
  9 >4;A/Regensburg/Germany/01/2009/04/27     --------- ------- ----- --...........A...........- ------------ -.......... -...... ---- 
 10 >A/swine-flu/index/2009-02-01(H1N1)       ......... ....... ..... .......................... ............ ........... ....... .... 
 11 >4;A/Denmark/513/2009/04/29               --------- ------- ----- .......................... ------------ .......A... ....... .... 
 12 >7;A/California/08/2009/04/09             --------- ------- ----- -------------------------- ------------ ----------- ....... .... 
 13 >4;A/Kansas/03/2009/04/24                 --------- ------- ----- .A..............T.-------- ------------ ----------- ------- ---- 
 14 >3;A/Texas/05/2009/04/15                  --------- ------- C.... -------------------------- ............ ----------- ....A.. ...G 
 15 >4;A/New York/20/2009/04/25               --------- ------- ----- -...........A...T.AG------ ------------ ...A..G.... ------- ---- 
 16 >3;A/New York/15/2009/04/25               --------- ------- ..... -------------------------- ..A.......AA ...A..G.... ...A.A. G... 
 17 >3;A/New York/31/2009/04/24               --------- ------- ..... ............A..........T.. ..A.......AA ...A..G.... ------- G... 
 18 >2;A/New York/10/2009/04/25               --------- G...... ..... ............A..........T.. ..A.......AA ...A..G.... ...A.A. G... 
 19 >2;A/New York/19/2009/04/25               --------- ....... ..... ............A..........T.. ..A.......AA ...A..G.... ...A.A. G... 
 20 >4;A/New York/23/2009/04/24               --------- ------- ----- ......A.....A..........T.. ..A.......AA ...A..G.... ------- G... 
 21 >4;A/Toronto/3141/2009/04/                --------- ------- ----- ----------..A........----- ------------ ----------- ------- ---- 
 22 >4;A/New York/12/2009/04/25               --------- ------- ----- ............A..........T.. ..A.......AA ..CA..G.... ------- G... 
 23 >7;A/Switzerland/01/2009/04/28            --------- ------- ----- -------------------------- ------------ ----------- -.TA.-- ---- 
 24 >4;A/Netherlands/602/2009/04/29           --------- ------- ----- .........................A ------------ ....GG...C. ------- ---- 
 25 >7;A/Auckland/2/2009/04/24                --------- ------- ----- -------------------------- ------------ ----------- ....... ---- 
 26 >4;A/Castilla-La Mancha/GP9/2009-04-26    --------- ------- ----- --...A........G......----- T...C....... ------..... ....... .... 
 27 >4;A/Valencia/GP4/2009-04-26              --------- ------- ----- --...A........G......----- ........T... ------..... ....... .... 
 28 >4;A/Castilla-La Mancha/GP13/2009-04-26   --------- ------- ----- --...A........G......----- ........T... ------..... ....... .... 
 29 >7;A/Italy/02/2009//                      --------- ------- ----- -------------------------- ------------ ----------- ..----- ---- 
 30 >1;A/California/06/2009/04/16             GA..C.TA. ...TG.. .G.C. A........A................ ........T... .G......... ....... ..A. 
 31 >4;A/California/10/2009/04/08             --------- ------- ----- A......................... ------------ ----------- -...... ---- 
 32 >1;A/California/05/2009/03/30             ......... ..A.... .G.C. A......................... .C...T..T... .G......... C...... ---- 
 33 >4;A/Toronto/3181/2009/04/                --------- ------- ----- -----......--------------- ------------ ----------- ------- ---- 
 34 >4;A/Auckland/1/2009/04/25                --------- ------- ----- --.....................T.. ------------ G..A..G.... -...... ---- 
 35 >4;A/Toronto/3184/2009/04/                --------- ------- ----- -----......--------------- ------------ ----------- ------- ---- 
 36 >4;A/Ohio/07/2009/04/24                   --------- ------- ----- -...........A.....AG------ ------------ ...A..G.... ...A.A. ---- 
 37 >5;A/New York/06/2009/04/25               --------- ------- ----- -------------------------- ..A.......AA ...A..G.... ...A.A. G... 
 38 >4;A/Ohio/07/2009/04/24                   --------- ------- ----- -...........A....A-------- ------------ ----------- ------- ---- 
 39 >6;A/Auckland/3/2009/04/25                --------- ------- ----- -------------------------- ------------ -..A..G.C.. ....... ---- 
 40 >1;A/California/07/2009/04/09             ..G..C... ------- ..C.T ........C......A....A..... ------------ ----------- ....... ---- 
 41 >1;A/California/08/2009/04/09             ..G..C... ....... ..C.T ........C......A....A..... .........A.. ----------- ....... .... 
 42 >1;A/California/07/2009/04/09             ..G..C... ....... ..C.T ........C......A....A..... ------------ ----------- ....... .... 
 43 >1;A/California/07/2009/04/09             ..G..C... ....... ..C.T ........C......A....A..... ...T........ ..........G ....... .... 
 44 >4;A/California/09/2009/04/15             --------- ------- ----- ........C..A...A---------- ------------ ..........G ....... ---- 
 45 >1;A/California/04/2009/04/01             ..G..C... .....A. ..C.T ........C..A...A....A..... ............ ..........G -...... .... 
 46 >1;A/California/04/2009/04/01             ..G..C... ------- ..C.T -------------------------- ............ ..........G ....... .... 
 47 >4;A/Ohio/07/2009/04/24                   --------- ------- ----- ............A.........AT.. ------------ ----------- ------- ---- 
 48 >3;A/Ohio/07/2009/04/24                   --------- ------- ..... ............A.........AT.. ..A...A...AA ...A..G.... ...A.A. G... 
 49 >4;A/Toronto/3145/2009/04/                --------- ------- ----- ----------..A........----- ------------ ----------- ------- ---- 
 50 >4;A/Toronto/3170/2009/04/                --------- ------- ----- --CGT......--------------- ------------ ----------- ------- ---- 
 51 >4;A/Toronto/3146/2009/04/                --------- ------- ----- ----------..A........----- ------------ ----------- ------- ---- 
 52 >3;A/New York/11/2009/04/25               --------- ------- ..... ............A..........T.. ..A.......AA ...A..G.... ...A.A. G... 
 53 >4;A/New York/19/2009/04/25               --------- ------- ----- ............A..........T.. ------------ ----------- ------- ---- 
 54 >1;A/New York/18/2009/04/25               ........A ......A ..... ............A..........T.. ..A.......AA ...A..G.... ...A.A. GA.. 
                                                                                                                                       
---Index--------------------------------------AGAGTTCGG CTCCAGG AATAG CGTACCGCTGTGTGTGCGGAGGGCGT CAGATCGACGGG AATGAAAGAAA TACGGGC AGCA 
-codon-position------------------------------- 1     2  1     2   11  112121  1  11    2 11 11 1   12  1 21    1 11 1 2    111111 2112 
                                              001111222 0000112 00011 00000000000000000111111111 000000011111 00000000001 0000000 0000 
                                              442378001 0489770 55679 00111122235667889000012456 122336701112 02333477990 0144566 3477 
                                              281057796 2521053 68748 23233401960455799000178069 389696521244 78112048244 1009201 7548 
                                              018852033 8055183 18016 27801579867086316156232839 228569198338 53562826054 5939973 7485

gsgs · Aug 18, 2010

Re: swine flu sequences (thread from h5n1experts)

--------posted:2009/06/05--------------
full genomes only

Code:

                                         1   2   3   4   5   6   7   8   9  10  11  12  13  14  15  16  17  18  19  20   PB2 PB1  PA  HA  NP  NA   M  NS
-----------------------------------------------------------------------------------------------------------------------------------------------------------------
  1 >A/Canada-ON/RV1526/2009            0   5   7   7   8   6  15  17  22  28  22  22  27  24  25  28  24  24  24  29     9  10   9  23  18  14  17  13    13#   18   13207   5536      1:>A/Canada-ON/RV1526/2009         
  2 >A/California/14/2009-04-25         5   0   3   3   4   3  12  14  19  26  19  19  24  21  22  24  22  22  19  27    12   3   5  17  18  14  17  13    11#   15   13132   5536      2:>A/California/14/2009-04-25      
  3 >A/Canada-ON/RV1527/2009            7   3   0   2   5   4  13  15  20  27  20  20  25  22  23  25  23  23  23  28     9   4   9  17  18  14  25  12    12#   16   13191   5535      3:>A/Canada-ON/RV1527/2009         
  4 >A/Canada-ON/RV1529/2009(H1N1)      7   3   2   0   5   4  13  15  20  27  20  20  25  22  23  26  23  23  23  28     9   4   5  22  18  14  25  13    12#   16   13206   5536      4:>A/Canada-ON/RV1529/2009(H1N1)   
  5 >A/Canada-AB/RV1532/2009(H1N1)      8   4   5   5   0   5  14  16  21  28  21  21  26  23  24  27  24  24  24  29    17   4   5  22  18  14  17  13    13#   17   13206   5534      5:>A/Canada-AB/RV1532/2009(H1N1)   
  6 >A/New York/18/2009-04-25           6   3   4   4   5   0  13  15  20  27  20  20  25  22  23  25  23  23  20  28     8   7   5  17  18  14  17  23    12#   16   13138   5537      6:>A/New York/18/2009-04-25        
  7 >A/swine-flu/index/2009-02-01      15  12  13  13  14  13   0   2   7  14   7   7  12   9  10  13  10  10  10  15     7   4   5  12  10   9   9   8     7#   10   13212   5528      7:>A/swine-flu/index/2009-02-01    
  8 >A/Mexico/InDRE4487/2009           17  14  15  15  16  15   2   0   9  16   9   9  14  11  12  15  12  12  12  17    11   4   9  12  10   9   9   8     9#   12   13212   5528      8:>A/Mexico/InDRE4487/2009         
  9 >A/Mexico/InDRE4114/2009           22  19  20  20  21  20   7   9   0  19  14  14  19  16  17  20  17  17  17  22    15   7   5  22  10  15  18   8    12#   16   13204   5529      9:>A/Mexico/InDRE4114/2009         
 10 >A/California/06/2009-04-16        28  26  27  27  28  27  14  16  19   0  17  17  22  19  20  22  24  24  21  29    26  11  10  22  12  15   9  18    16#   21   13146   5529     10:>A/California/06/2009-04-16      
 11 >A/New York/1682/2009-04-27        22  19  20  20  21  20   7   9  14  17   0  10  15  12  13  16  17  17  15  20    11   4   6  26  12  15   9   8    11#   15   13201   5530     11:>A/New York/1682/2009-04-27      
 12 >A/New York/1669/2009-04-26        22  19  20  20  21  20   7   9  14  17  10   0  13  10  11  14  17  17  14  22     8   8   6  12  24  15   9   8    11#   14   13198   5527     12:>A/New York/1669/2009-04-26      
 13 >A/Canada-NS/RV1536/2009           27  24  25  25  26  25  12  14  19  22  15  13   0   3   4  11  22  22  22  27    13   9   9  19  18  13   9  18    13#   17   13206   5526     13:>A/Canada-NS/RV1536/2009         
 14 >A/Canada-NS/RV1535/2009           24  21  22  22  23  22   9  11  16  19  12  10   3   0   1   8  19  19  19  24     9   9   9  19  12  13   9   8    11#   15   13215   5529     14:>A/Canada-NS/RV1535/2009         
 15 >A/Canada-NS/RV1527/2009           25  22  23  23  24  23  10  12  17  20  13  11   4   1   0   9  20  20  20  25     9  13   9  19  12  13   9   8    12#   16   13215   5530     15:>A/Canada-NS/RV1527/2009         
 16 >A/Canada-NS/RV1538/2009           28  24  25  26  27  25  13  15  20  22  16  14  11   8   9   0  22  22  22  27     9  10  13  19  12  13  18  29    14#   18   13206   5527     16:>A/Canada-NS/RV1538/2009         
 17 >A/California/04/2009-04-01        24  22  23  23  24  23  10  12  17  24  17  17  22  19  20  22   0   4  17  25    13   7  12  31  10  14   9   8    13#   18   13146   5527     17:>A/California/04/2009-04-01      
 18 >A/California/07/2009-04-09        24  22  23  23  24  23  10  12  17  24  17  17  22  19  20  22   4   0  17  25    13   3  12  26  22  14   9   8    13#   18   13146   5526     18:>A/California/07/2009-04-09      
 19 >A/Texas/04/2009-04-14             24  19  23  23  24  20  10  12  17  21  15  14  22  19  20  22  17  17   0   8    18   7   8  21  10   9  17  17    13#   17   13155   5528     19:>A/Texas/04/2009-04-14           
 20 >A/Texas/09/2009-04-25             29  27  28  28  29  28  15  17  22  29  20  22  27  24  25  27  25  25   8   0    14   7  13  26  10  34  17  28    17#   22   13132   5528     20:>A/Texas/09/2009-04-25           
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------
                                        1   2   3   4   5   6   7   8   9  10  11  12  13  14  15  16  17  18  19  20    12   6   8  20  14  14  13  13


                                     0000000011111122222222 00001111122 000000011112 0000000000011111111 00001111 000000000011 000000 00000000 
                                     0022447723357800012222 14491777902 555668836791 0233666788801122455 22331112 122377777702 455668 00234778 
                                     7848284910975727968899 45716056238 568370277486 2916458137917988067 69691144 048122346843 925078 59964371 
                                     2852017988075280330923 30051180232 818006347162 2826087677123812839 78577838 703601828640 228093 44074855 
-codon-position---------------------- 12  1 1  12    2    1 2 2    2222     121  1 2 11  11 2 1 1 1 11 1  12112   2 11 1 1         11  121  12 
---Index-----------------------------TAAGAGAGAGCATTTCGGGTTT ATCCGAGTAGA TAATTGCCGAGG CTTGGTGAAAGGGAAGCGA TGACACGG AGAGTGAACGAA GGAGGG CTAAGCAG 
  1 >A/Canada-ON/RV1526/2009         .................A.... ....A.....G ...C........ .....W.........AT.. .A....AA ...A...G.... A..A.. ...G....       15     15 ,     15     15      1:>A/Canada-ON/RV1526/2009         
  2 >A/California/14/2009-04-25      .................AA--- ..........- ...........- .....A..........T.. .A....AA ...A...G.... A..A.. ...G....       17     17 ,     12     12      2:>A/California/14/2009-04-25      
  3 >A/Canada-ON/RV1527/2009         .................A.... ........... C..........- .....A..........T.. .A....AA ...A...G.... A..AA. ...G....       14     14 ,     13     13      3:>A/Canada-ON/RV1527/2009         
  4 >A/Canada-ON/RV1529/2009(H1N1)   .................A.... ........... ............ .....A........G.T.. .A....AA ...A...G.... A..AA. ...G....       13     13 ,     13     13      4:>A/Canada-ON/RV1529/2009(H1N1)   
  5 >A/Canada-AB/RV1532/2009(H1N1)   .G....G..........A.... ........... ............ ..G..A..........T.. .A....AA ...A...G.... A..A.. ...G....       14     14 ,     14     14      5:>A/Canada-AB/RV1532/2009(H1N1)   
  6 >A/New York/18/2009-04-25        .................A.--- .........A- ...........- .....A..........T.. .A....AA ...A...G.... A..A.. ...GA...       18     18 ,     13     13      6:>A/New York/18/2009-04-25        
  7 >A/swine-flu/index/2009-02-01    ...................... ........... ............ ................... ........ ............ ...... ........        0      0 ,      0      0      7:>A/swine-flu/index/2009-02-01    
  8 >A/Mexico/InDRE4487/2009         ..G................... ........... ......A..... ................... ........ ............ ...... ........        2      2 ,      2      2      8:>A/Mexico/InDRE4487/2009         
  9 >A/Mexico/InDRE4114/2009         ...A......A........... .....G..... ............ .......G..........T ........ G........... .....A ........        7      7 ,      7      7      9:>A/Mexico/InDRE4114/2009         
 10 >A/California/06/2009-04-16      ....GA......C..TA..--- ...T.G....- ..G......C.- A..A............... .....T.. ..G......... ...... .....A..       19     19 ,     14     14     10:>A/California/06/2009-04-16      
 11 >A/New York/1682/2009-04-27      .......A.............. ........... .........C.. ......T..G..A...... .....T.. ........T... ...... ........        7      7 ,      7      7     11:>A/New York/1682/2009-04-27      
 12 >A/New York/1669/2009-04-26      ...........G.......--- G.......... .........C.. ................... C..A.T.. .........A.. ...... ........       10     10 ,      7      7     12:>A/New York/1669/2009-04-26      
 13 >A/Canada-NS/RV1536/2009         ...........G..C....... ..T....C... .....A...C.. ........G....G..... ....GT.. ...........G ...... T.......       12     12 ,     12     12     13:>A/Canada-NS/RV1536/2009         
 14 >A/Canada-NS/RV1535/2009         ...........G.......... ..T....C... .....A...C.. ........G....G..... .....T.. ...........G ...... ........        9      9 ,      9      9     14:>A/Canada-NS/RV1535/2009         
 15 >A/Canada-NS/RV1527/2009         ...........G.......... ..T....C... .....A...C.. ........G....G..... .....T.. ...........G ...... ........        9      9 ,      9      9     15:>A/Canada-NS/RV1527/2009         
 16 >A/Canada-NS/RV1538/2009         ...........G.......... .......CG.. .......T.C.T ........G....G..... .....T.. ...........G ..G... ..G....A       13     13 ,     13     13     16:>A/Canada-NS/RV1538/2009         
 17 >A/California/04/2009-04-01      ........G....C.....--- ......A...- ....C.....T- .C..A.....AA....... ........ ..........G. ...... ........       15     15 ,     10     10     17:>A/California/04/2009-04-01      
 18 >A/California/07/2009-04-09      ........G....C.....--- ..........- ....C.....T- .C........AA....... ..T..... ..........G. ...... ........       14     14 ,      9      9     18:>A/California/07/2009-04-09      
 19 >A/Texas/04/2009-04-14           .........A.........AAA .C........- .C.........- ............A....A. ........ ............ .A.... ......G.       12     12 ,     10     10     19:>A/Texas/04/2009-04-14           
 20 >A/Texas/09/2009-04-25           C........A.........--- .C........- .C......A..- ............A....A. ........ .A..CAC..... .A.... .C....G.       19     19 ,     14     14     20:>A/Texas/09/2009-04-25           
                                                                                                                                               
---Index-----------------------------TAAGAGAGAGCATTTCGGGTTT ATCCGAGTAGA TAATTGCCGAGG CTTGGTGAAAGGGAAGCGA TGACACGG AGAGTGAACGAA GGAGGG CTAAGCAG 
-codon-position---------------------- 12  1 1  12    2    1 2 2    2222     121  1 2 11  11 2 1 1 1 11 1  12112   2 11 1 1         11  121  12 
                                     0000000011111122222222 00001111122 000000011112 0000000000011111111 00001111 000000000011 000000 00000000 
                                     0022447723357800012222 14491777902 555668836791 0233666788801122455 22331112 122377777702 455668 00234778 
                                     7848284910975727968899 45716056238 568370277486 2916458137917988067 69691144 048122346843 925078 59964371 
                                     2852017988075280330923 30051180232 818006347162 2826087677123812839 78577838 703601828640 228093 44074855

gsgs · Aug 18, 2010

Re: swine flu sequences (thread from h5n1experts)

--------posted:2009/05/10-----------
(previous posts were from 2009/05/06, not 2009/06/05)

HA:

Code:

                                            0000000000000000000000000000000011111111111111111  
                                            0001111112233344455667777888999900000112233346677  
                                            2687778895634511856280236089122344455121422450234  
                                            6612456911302607919042510015713505906247256027333  
-codon-position-----------------------------2  1 1  222  22  222  2212212 22212  222 2 2 2 2   
---Index------------------------------------                                                   
  1 >A/Toronto/3181/2009(H1N1)              .-----..............-----------------------------  
  2 >A/Toronto/3184/2009(H1N1)              .-----..............-----------------------------  
  3 >A/Toronto/3178/2009(H1N1)              .--.................-----------------------------  
  4 >A/Canada-NS/RV1535/2009(H1N1)          ..........................G.............G........  
  5 >A/Canada-NS/RV1538/2009(H1N1)          ..........................G.............G........  
  6 >A/Canada-NS/RV1536/2009(H1N1)          ..........................G.............G........  
  7 >A/New York/1669/2009(H1N1)             .................................................  
  8 >A/Denmark/513/2009(H1N1)               .................................................  
  9 >A/Mexico/InDRE4487/2009(H1N1)          .................................................  
 10 >A/Arizona/01/2009(H1N1)                .................................................  
 11 >A/Netherlands/602/2009(H1N1)           G...............................................A  
 12 >A/Regensburg/Germany/01/2009(H1N1)     .--......................A....................---  
 13 >A/Catalonia/P154/2009(H1N1)            .--............A...............................--  
 14 >A/Texas/15/2009(H1N1)                  ...............A......A..........................  
 15 >A/California/05/2009(H1N1)             .A...............................................  
 16 >A/California/10/2009(H1N1)             .A...............................................  
 17 >A/California/06/2009(H1N1)             .A............A..................................  
 18 >A/Colorado/03/2009(H1N1)               .A....................................A..........  
 19 >A/Auckland/1/2009(H1N1)                .--.........................................T....  
 20 >A/Michigan/02/2009(H1N1)               ............................................T....  
 21 >A/New York/19/2009(H1N1)               .....................A......................T....  
 22 >A/Toronto/3141/2009(H1N1)              .----------------....A...............------------  
 23 >A/Toronto/3145/2009(H1N1)              .----------------....A...............------------  
 24 >A/Toronto/3146/2009(H1N1)              .----------------....A...............------------  
 25 >A/New York/11/2009(H1N1)               .....................A......................T....  
 26 >A/New York/18/2009(H1N1)               .....................A......................T....  
 27 >A/New York/31/2009(H1N1)               .....................A......................T....  
 28 >A/New York/10/2009(H1N1)               .....................A......................T....  
 29 >A/New York/19/2009(H1N1)               .....................A......................T....  
 30 >A/Canada-ON/RV1527/2009(H1N1)          .....................A......................T....  
 31 >A/New York/22/2009(H1N1)               .....................A......................T....  
 32 >A/California/14/2009(H1N1)             .....................A......................T....  
 33 >A/Massachusetts/06/2009(H1N1)          .....................A......................T....  
 34 >A/New York/20/2009(H1N1)               .....................A......................T....  
 35 >A/New York/20/2009(H1N1)               .....................A......................T....  
 36 >A/Massachusetts/07/2009(H1N1)          .....................A......................T....  
 37 >A/New York/13/2009(H1N1)               .....................A......................T....  
 38 >A/New York/12/2009(H1N1)               .....................A......................T....  
 39 >A/New York/23/2009(H1N1)               .........A...........A......................T....  
 40 >A/Ohio/07/2009(H1N1)                   .....................A....................A.T....  
 41 >A/Ohio/07/2009(H1N1)                   .....................A....................A.T....  
 42 >A/Canada-ON/RV1526/2009(H1N1)          .....................W....................A.T....  
 43 >A/Ohio/07/2009(H1N1)                   ...........G.........A....................A.T....  
 44 >A/Canada-ON/RV1529/2009(H1N1)          .....................A...................G..T....  
 45 >A/Ohio/07/2009(H1N1)                   .-...................A...........A---------------  
 46 >A/Canada-AB/RV1532/2009(H1N1)          .............G.......A......................T....  
 47 >A/Arizona/02/2009(H1N1)                ......G..........................................  
 48 >A/Korea/01/2009(H1N1)                  ...............................................G.  
 49 >A/Catalonia/P148/2009(H1N1)            .--....A....................G..................--  
 50 >A/Castilla-La Mancha/GP13/2009(H1N1)   .--....A....................G........------------  
 51 >A/Valencia/GP4/2009(H1N1)              .--....A....................G........------------  
 52 >A/Castilla-La Mancha/GP9/2009(H1N1)    .--....A....................G........------------  
 53 >A/South Carolina/09/2009(H1N1)         .......A....................G....................  
 54 >A/Mexico/InDRE4114/2009(H1N1)          ........................G.....................T..  
 55 >A/Texas/05/2009(H1N1)                  .......................................A.....A...  
 56 >A/Texas/04/2009(H1N1)                  .......................................A.....A...  
 57 >A/Texas/04/2009(H1N1)                  .......................................A.....A...  
 58 >A/Texas/04/2009(H1N1)                  .......................................A.....A...  
 59 >A/Texas/06/2009(H1N1)                  .......................................A.....A...  
 60 >A/Texas/08/2009(H1N1)                  .......................................A.....A...  
 61 >A/Kansas/02/2009(H1N1)                 .......................................A.....A...  
 62 >A/Texas/09/2009(H1N1)                  .......................................A.....A...  
 63 >A/New York/1682/2009(H1N1)             .......................T.....G.........A.........  
 64 >A/Kansas/03/2009(H1N1)                 ..A...............T..............................  
 65 >A/Kansas/03/2009(H1N1)                 ..A.............................T.---------------  
 66 >A/Indiana/09/2009(H1N1)                ........C.......A................................  
 67 >A/California/07/2009(H1N1)             ............C..................A....A............  
 68 >A/California/08/2009(H1N1)             ............C..................A....A............  
 69 >A/California/07/2009(H1N1)             ............C..................A....A............  
 70 >A/California/04/2009(H1N1)             ............C.......A..........A....A............  
 71 >A/California/09/2009(H1N1)             ............C.......A..........A-----------------  
 72 >A/California/04/2009(H1N1)             ............C.......A..........A....A............  
 73 >A/California/07/2009(H1N1)             ............C...........R......A....A............  
 74 >A/Texas/07/2009(H1N1)                  ...................A.................A.....T.....  
 75 >A/Pais Vasco/GP20/2009(H1N1)           .--.......T......C...................------------  
 76 >A/Ohio/07/2009(H1N1)                   .-...................A............AG-------------  
 77 >A/New York/20/2009(H1N1)               .-...................A..........T.AG-------------  
 78 >A/Toronto/3170/2009(H1N1)              .--CGT..............-----------------------------  
 79 >A/Stockholm/28/2009(H1N1)              A.............................C........----------  
 80 >A/Nonthaburi/102/2009(H1N1)            .--------------------------G...........----------  
                                                                                               
---Index------------------------------------                                                   
-codon-position-----------------------------2  1 1  222  22  222  2212212 22212  222 2 2 2 2   
                                            0000000000000000000000000000000011111111111111111  
                                            0001111112233344455667777888999900000112233346677  
                                            2687778895634511856280236089122344455121422450234  
                                            6612456911302607919042510015713505906247256027333

gsgs · Aug 18, 2010

Re: swine flu sequences (thread from h5n1experts)

---------posted: 2009/05/13----------------
epitopes:

20836,HA,GLFGAIAGF,B cell linear
37043,M1,LKTRPILSPLTKGILGFVFTLTVPSERGLQRRRFVQNALNGNGD,B cell linear
97650,M2,SLLTEVET,B cell linear
15381,NP,FDERRNKYLEEHPSAGKDPKKTGGPI,B cell linear
17539,NP,FQTAAQR,B cell linear
45359,NP,NPGNAEIEDLIFLAR,B cell linear
67436,NP,TYQRTRALV,B cell linear
97236,PB1,DAVATTHSWIPKRNRSIL,B cell linear
20837,HA,GLFGAIAGFI,T cell class I
97183,M1,AGKNTDLEALMEWLKTR,T cell class I
27350,M1,ILSPLTKGIL,T cell class I
20356,M1,GILGFVFTLTV,T cell class I
54953,M1,RMVLASTTAK,T cell class I
4349,M1,ASCMGLIY,T cell class I
33844,M1,KTRPILSPLTK,T cell class I
97506,M1,MSLLTEVETYVLSII,T cell class I
28309,M1,IRHENRMVL,T cell class I
53918,M1,RGLQRRRFVQNALNGNG,T cell class I
20354,M1,GILGFVFTL,T cell class I
58567,M1,SIIPSGPLK,T cell class I
62486,NA,SWPDGAELPF,T cell class I
97772,NP,YERMCNILKG,T cell class I
97173,NP,AEIEDLIFLA,T cell class I
60867,NP,SRYWAIRTR,T cell class I
97614,NP,RMVLSAFDER,T cell class I
53890,NP,RGINDRNFW,T cell class I
55738,NP,RRSGAAGAAVK,T cell class I
35590,NP,LELRSRYWAI,T cell class I
35589,NP,LELRSRYWA,T cell class I
97298,NP,FEDLRVSSF,T cell class I
27283,NP,ILRGSVAHK,T cell class I
27126,NP,ILKGKFQTA,T cell class I
97178,NP,AFDERRNKYLEEHPSAGK,T cell class I
7136,NP,CTELKLSDY,T cell class I
13263,NP,ELRSRYWAI,T cell class I
97583,NP,QLVWMACHSAA,T cell class I
19312,NS1,GEISPLPSL,T cell class I
97405,NS2,ITFMQALQLL,T cell class I
97503,PA,MRRNYFTAEVSHCRATEY,T cell class I
17119,PA,FMYSDFHFI,T cell class I
1166,PA,AESRKLLLI,T cell class I
62180,PA,SVKEKDMTK,T cell class I
97781,PB1,YRRPVGISSMVEAMVSRA,T cell class I
42143,PB1,MMMGMFNML,T cell class I
21574,PB1,GPATAQMAL,T cell class I
4177,PB1,ARLGKGYMF,T cell class I
32289,PB1,KMARLGKGY,T cell class I
10514,PB1,DTVNRTHQY,T cell class I
70898,PB1,VSDGGPNLY,T cell class I
97299,PB1,FEFTSFFY,T cell class I
97693,PB1,TLARSICEK,T cell class I
97314,PB1,FVANFSMEL,T cell class I
65880,PB1,TQIQTRRSF,T cell class I
16681,PB1,FLKDVMESM,T cell class I
6174,PB1,CEKLEQSGL,T cell class I
17780,PB1,FSMELPSFGV,T cell class I
97309,PB1,FNMLSTVLGV,T cell class I
97682,PB1,TFPYTGDPPYSHGTGTGY,T cell class I
63635,PB1,TFEFTSFFY,T cell class I
97779,PB2,YMLERELVRKTRFLPVA,T cell class I
95905,HA,TGMVDGWYGYHHQNEQGS,T cell class II
96007,HA,WTYNAELLVLLENERTLD,T cell class II
95623,HA,NKVNSVIEKMNTQFTAVG,T cell class II
97482,M1,LTKGILGFVFTLTVPSER,T cell class II
51249,M1,QKRMGVQMQRFK,T cell class II
97613,M1,RMVLASTTAKAMEQM,T cell class II
97403,M1,IRHENRMVLASTTAKAM,T cell class II
97740,M1,VLASTTAKAMEQMAGSSEQA,T cell class II
67496,M1,TYVLSIIPSGPLKAEIAQRL,T cell class II
21087,M1,GLQRRRFVQNALNGNGDPNN,T cell class II
65112,M1,TLTVPSERGLQRRRFVQNAL,T cell class II
37217,M1,LLENLQAYQKRMGVQMQRFK,T cell class II
97418,M1,KGILGFVFTLTVPSE,T cell class II
65389,M1,TNPLIRHENRMVLASTTAKA,T cell class II
97730,M1,VFTLTVPSERGLQRRRFV,T cell class II
2754,M1,ALMEWLKTRPILSPLTKGIL,T cell class II
1579,M1,AGKNTDLEALMEWLKTRPIL,T cell class II
97280,M1,ERGLQRRRFVQNALNGNG,T cell class II
97306,NP,FLARSALILRGSVAHK,T cell class II
97448,NP,LILRGSVAHKSCLPACVY,T cell class II
45297,NP,NPAHKSQLVWMACHSAAFED,T cell class II
97487,NP,LVWMACHSAAFEDLR,T cell class II
14070,NP,ERRNKYLEEHPSAGKDPKKT,T cell class II
41793,NP,MIWHSNLNDATYQRTRALVR,T cell class II
97637,NP,SFDMSNEGSYFFGDNA,T cell class II
49220,NP,PRMCSLMQGSTLPRRSGAAG,T cell class II
97416,NP,KFQTAAQRAMMDQVRESR,T cell class II
97609,NP,RMCNILKGKFQTAAQRAM,T cell class II
36692,NP,LIRMIKRGINDRNFWRGENG,T cell class II
7655,NP,DATYQRTRALVRTGMDPRMC,T cell class II
97361,NP,GQISVQPTFSVQRNLPF,T cell class II
97269,NP,ELIRMIKRGINDRNFWR,T cell class II
10014,NS1,DRLRRDQKS,T cell class II
97623,PA,RSKFLLMDALKLSIE,T cell class II
97655,PB1,SPGMMMGMFNMLSTV,T cell class II
97610,PB1,RMFLAMITYITRNQP,T cell class II
97489,PB1,MAFLEESHPGIFENS,T cell class II
97713,PB1,TVLGVSILNLGQKKYTK,T cell class II
97501,PB1,MMGMFNMLSTVLGVS,T cell class II
59323,M1,SLLTEVETYVL,T cell unknown
32182,NP,KLSTRGVQIASNEN,T cell unknown
97411,NP,KATNPIVPSFDMSNEGSY,T cell unknown
70712,NP,VRESRNPGNAEIEDLIFLARS,T cell unknown
9745,NP,DPRMCSLMQGSTLP,T cell unknown
67439,NP,TYQRTRALVRTGMDP,T cell unknown
38689,NP,LPRRSGAAGAAVKG,T cell unknown
36863,NP,LKGKFQTAAQRAMMDQVRES,T cell unknown
97701,PB1,TNTETGAPQLNPIDGPL,T cell unknown
97354,PB1,GMFNMLSTVLGVSILNL,T cell unknown
97392,PB1,IFENSCLETMEVVQQTRV,T cell unknown
97389,PB1,HRGDTQIQTRRSFELKKL,T cell unknown
97559,PB1,PQLNPIDGPLPEDNEPSGY,T cell unknown
97228,PB1,CKLVGINMSKKKSYINK,T cell unknown
97611,PB1,RMFLAMITYITRNQPEWF,T cell unknown
97237,PB1,DCVLEAMAFLEESHPGIF,T cell unknown
97747,PB1,VNRTHQYSEKGKWTTNTE,T cell unknown
97353,PB1,GLPVGGNEKKAKLANVVR,T cell unknown
97704,PB1,TQGRQTYDWTLNRNQPAA,T cell unknown
97519,PB2,NFVNRANQRLNPMHQLLR,T cell unknown

gsgs · Aug 18, 2010

Re: swine flu sequences (thread from h5n1experts)

---------posted 2009/05/14-----------

Code:

                                         0011 01 01112 01111111 0001111 00000 0000 
                                         2245 37 81780 70013456 3341112 13347 1889 
                                         5909 31 38585 33994296 2314671 12854 2294 
                                         8530 11 28075 42818672 8248436 21687 1733 
-codon-position-------------------------- 12  11 1 1   2   111  12 2  1 1 22  1221 
---Index---------------------------------AGCA CA CTAGT ACGGGCAG GATCCGA AGGCA ATGG 
  1 >A/Mexico/InDRE4114/2009             .AA. .G ..... G.....T. ....... G.... ..A. 
  2 >A/swine-flu/index/2009-02-01        .... .. ..... ........ ....... ..... .... 
  3 >A/Mexico/4115-C1/2009-04-07,f50     ---- -- ----- ........ ....... ..... .... 
  4 >A/Mexico/InDRE4487/2009-04-14,      G... .. A.... ........ ....... ..... .... 
  5 >A/Mexico/4603/2009-04-19,           ---- .. ...A. .....T.. A....A. .R..R .... 
  6 >A/Mexico/4604-C1/2009-04-19,f52     .... .. .C... .....T.. A.C..A. .AA.G T... 
  7 >A/Mexico/4482-C1IR/2009-04-14,f29   ---- .. ....C .....T.. A....A. ----- ---- 
  8 >A/Mexico/4482-C1/2009-04-14,f29     ---- -- ----- .....T.. A....A. .A.TG ---- 
  9 >A/Mexico/4482-orig/2009-04-14,f29   ---- -- ----- .....T.. ------- .A.TG .C.. 
 10 >A/Mexico/4516-C1/2009-04-25,m41     ---- -- ----- -------- A....AG ----- ---- 
 11 >A/Mexico/4108-orig/2009-04-02,m4    ---- -- ----- .------- ------- ..... ...A 
 12 >A/Mexico/4108-E1/2009-04-02,m4      ---- -- ----- ...AA..A .G.T... ..... ---- 
 13 >A/Mexico/4108-C1/2009-04-02,m4      ---- -- ..C.. ...AA..A ...T... ..... ...A 
 14 >A/Mexico/4108-C1C1/2009-04-02,m4    ---- -- ..C.. ...AA..A ...T... ..... ...A 
 15 >A/Mexico/4108-C1IR/2009-04-02,m4    ---- .. ..C.. ...AA..A ...T... ..... ---- 
 16 >A/Mexico/4486-C1/2009-04-14,m3      ...G T. ..C.. .TA..T.. ...TT.. ..... .... 
                                                                                   
---Index---------------------------------AGCA CA CTAGT ACGGGCAG GATCCGA AGGCA ATGG 
-codon-position-------------------------- 12  11 1 1   2   111  12 2  1 1 22  1221 
                                         0011 01 01112 01111111 0001111 00000 0000 
                                         2245 37 81780 70013456 3341112 13347 1889 
                                         5909 31 38585 33994296 2314671 12854 2294 
                                         8530 11 28075 42818672 8248436 21687 1733

gsgs · Aug 18, 2010

Re: swine flu sequences (thread from h5n1experts)

listing only polymorphisms that occur more than once in the table:

Code:

                                            11112 000111 0000111 00000001111111111 0011111 00000011 00000 000 
                                            23581 446779 5668789 12568880001123456 3411112 23447702 55669 378 
                                            10776 570069 6370478 49053791187983064 1433566 41154843 03184 671 
                                            88723 003105 1006186 58787312403810834 6456216 06532640 22093 755 
-codon-position-----------------------------  2    2  2    121   11 1   1   1 11   1 12     11 1    11121 112 
---Index------------------------------------AGATG TCGATC ATTGAGG CTTTATGGCGGAAGCGG GCACCGG GGTCAGAA GGGGG AAG 
  1 >A/Indiana/09/2009-04-22                ----- ..A..T ....C.. ................. .T.T... ........ ..... --- 
  2 >A/New York/1669/2009-04-26             ..G.. ...... ....C.. ................. ...T... .....A.. ..... ... 
  3 >A/Canada-NS/RV1538/2009                ..G.. ....C. ....C.. ....G......G..... ...T... .......G ..... ..A 
  4 >A/Canada-NS/RV1536/2009                ..G.. .T..C. ...AC.. ....G......G..... ..GT... .......G ..... ... 
  5 >A/Canada-NS/RV1527/2009                ..G.. .T..C. ...AC.. ....G......G..... ...T... .......G ..... ... 
  6 >A/Canada-NS/RV1535/2009                ..G.. .T..C. ...AC.. ....G......G..... ...T... .......G ..... ... 
  7 >A/Pais Vasco/GP20/2009-04-26           ----- ------ ------- ..C......-------- ...T... ----...- ..... ... 
  8 >A/California/06/2009-04-16             ..... ...G.. ....C.. ................. ...T... ........ ..... ... 
  9 >A/Castilla-La Mancha/GP13/2009-04-26   ----- ------ ------- A....G...-------- ...T... ----...- ..... ... 
 10 >A/Valencia/GP4/2009-04-26              ----- ------ ------- A....G...-------- ...T... ----...- ..... ... 
 11 >A/Castilla-La Mancha/GP9/2009-04-26    ----- ------ ------- A....G...-------- ....... ----...- ..... ... 
 12 >A/Mexico/InDRE4487/2009-04-14          ..... ...... ....... ................. ....... ........ ..... ... 
 13 >A/Arizona/01/2009-04-22                ----- ------ ------- ................. ....... ........ ..... ... 
 14 >A/Arizona/02/2009-04-26                ..... ...... ------- ................. ...T... ........ ..... --- 
 15 >A/Mexico/4115-C1/2009-04-07,f50        ----- ------ ------- ................. ....... ........ ..... ... 
 16 >A/swine-flu/index/2009-02-01           ..... ...... ....... ................. ....... ........ ..... ... 
 17 >A/Mexico/InDRE4114/2009                ..... ...G.. ....... ................. ....... ........ ..... ... 
 18 >A/California/07/2009-04-09             G..C. ...... ..C...T .C....AA......... ....... ......G. ..... ... 
 19 >A/California/04/2009-04-01             G..C. ...... ..C...T .C....AA......... ....... ......G. ..... ... 
 20 >A/Minnesota/02/2009-04-27              ..... .....T ------- ----------------- ...T... ........ ..... ... 
 21 >A/New York/1682/2009-04-27             ..... ...... ....C.. ..........A...... ...T... ........ ..... ... 
 22 >A/Mexico/4108-C1IR/2009-04-02,m4       ----- ...... ....C.. ..........A..A..A ...T... ........ ----- --- 
 23 >A/Mexico/4108-C1C1/2009-04-02,m4       ----- ------ ....C.. ..........A..A..A ...T... ........ ....A ... 
 24 >A/Mexico/4108-C1/2009-04-02,m4         ----- ------ ....C.. ..........A..A..A ...T... ........ ....A ... 
 25 >A/Mexico/4108-E1/2009-04-02,m4         ----- ------ ------- ..........A..A..A ...T... ........ ----- --- 
 26 >A/Mexico/4108-orig/2009-04-02,m4       ----- ------ ------- .......---------- ------- ........ ....A --- 
 27 >A/Mexico/4486-C1C1/2009-04-14,m3       ----- ------ ....C.. ........TA....T.. ...TT.. ........ ..... ... 
 28 >A/Mexico/4486-C1/2009-04-14,m3         ..G.. ...... ....C.. ........TA....T.. ...TT.. ........ ..... ... 
 29 >A/Mexico/4486-orig/2009-04-14,m3       ----- ------ ------- .......---------- ------- ........ ..... --- 
 30 >A/Texas/04/2009-04-14                  .A... C..... C...... ..........A....A. ....... ........ .A... .G. 
 31 >A/Texas/09/2009-04-25                  .A... C..... C...... ..........A....A. ....... A....... .A... .G. 
 32 >A/Mexico/4482-C1IR/2009-04-14,f29      ----- ...... ....... ..............T.. A....A. -------- ----- --- 
 33 >A/Mexico/4603-C1E2/2009-04-19,f59      ----- ------ ------- ..............T.. A....A. .R..R... ----- --- 
 34 >A/Mexico/4603-C1C1/2009-04-19,f59      ----- ...... ------- ..............T.. A....A. .R..G... ..... ... 
 35 >A/Mexico/4604-C1/2009-04-19,f52        ..... ...... ....... ..............T.. A....A. .A..G... ..... ... 
 36 >A/Canada-ON/RV1526/2009                ....A ...... .C..... ...W..........T.. A....AA .A..G... A.A.. G.. 
 37 >A/New York/18/2009-04-25               ....A ...... ....... ...A..........T.. A....AA .A..G... A.A.. G.. 
 38 >A/Canada-AB/RV1532/2009(H1N1)          ....A ...... ....... ...A..........T.. A....AA .A..G... A.A.. G.. 
 39 >A/Canada-ON/RV1529/2009(H1N1)          ....A ...... ....... ...A........G.T.. A....AA .A..G... A.AA. G.. 
 40 >A/Canada-ON/RV1527/2009                ....A ...... ....... ...A..........T.. A....AA .A..G... A.AA. G.. 
 41 >A/California/14/2009-04-25             ....A ...... ....... ...A..........T.. A....AA .A..G... A.A.. G.. 
 42 >A/Michigan/02/2009-04-26               ----- ------ ....... ..............T.. A....A. .A..G... A.... ... 
 43 >A/Nonthaburi/102/2009                  ----- ------ ------- ..............T.. A....A. .AC.G... ..... ... 
 44 >A/Mexico/4603-C1/2009-04-19,f59        ----- ------ .....A. ..............T.. A....A. -------- ..... ... 
 45 >A/Mexico/4482-C1/2009-04-14,f29        ----- ------ ------- ..............T.. A....A. .A.TG... ----- --- 
 46 >A/Mexico/4482-orig/2009-04-14,f29      ----- ------ ------- ..............T.. ------- .A.TG... ..... --- 
 47 >A/Mexico/4516-C1/2009-04-25,m41        ----- ------ ------- ----------------- A....A. -------- ----- --- 
 48 >A/NovelFlu-match/1-2/07(H3N2)            ..... ..A.C. .C...A. ..C......A..GX... .TG.... A.C..AG. A.... ..A 
                                                                                                              
---Index------------------------------------AGATG TCGATC ATTGAGG CTTTATGGCGGAAGCGG GCACCGG GGTCAGAA GGGGG AAG 
-codon-position-----------------------------  2    2  2    121   11 1   1   1 11   1 12     11 1    11121 112 
                                            11112 000111 0000111 00000001111111111 0011111 00000011 00000 000 
                                            23581 446779 5668789 12568880001123456 3411112 23447702 55669 378 
                                            10776 570069 6370478 49053791187983064 1433566 41154843 03184 671 
                                            88723 003105 1006186 58787312403810834 6456216 06532640 22093 755

gsgs · Aug 18, 2010

Re: swine flu sequences (thread from h5n1experts)

16.May , geno33f.bas , only polymorphisms which occur at least once

Code:

                                      011112 0011112 000011 00000000000001111111111 000000001111 000000011111111 0000000 00000 
                                      723581 4417792 556879 00123666788880011223456 012236680112 022377900002333 4566889 03477 
                                      910776 5760690 687048 23497458137791879893064 836994672144 748148445683123 9207113 96537 
                                      988723 0011052 180616 27583087673712038260834 427879997838 503626549200790 2209563 47685 
-codon-position-----------------------1  2    2  2     121  1111111 2  1 1  11 11      111  12     111         1    12   11  1 
---Index------------------------------GAGATG TCGATCG AATGAG CGCTGGTGAATAGGGGAGCGCGG TCTGCGCGGCGG AGAGAGAACCGACAT GGGGACG TAGCA 
  1 >A/Indiana/09/2009                ------ .....T. ....C. ....................... .........T.. ............... ....... ----- 
  2 >A/Auckland/2/2009                ------ ------- ------ ----------------------- ------------ --------------- ....... ----- 
  3 >A/Texas/15/2009                  ------ ....... ------ ....A.................. ............ .......G....... ....... ..... 
  4 >A/NY/09/2009                     ------ ....... ------ ----------------------- ------------ --------------- ------- ----- 
  5 >A/Stockholm/28/2009              ------ ------- ------ ...............-------- ------------ ............... ....... ----- 
  6 >A/Italy/02/2009                  ------ ------- ------ ----------------------- .T.--------- --------------- ------- ----- 
  7 >A/Christchurch/2/2009            ------ ------- ------ ............R.......... ------------ ...........G... ....... ----- 
  8 >A/Italy/04/2009                  ------ ------- ------ ----------------------- C..--------- --------------- ------- ----- 
  9 >A/Auckland/1/2009                ------ ------- ------ ....................T.. ------------ G..AG.......... ....... ----- 
 10 >A/Italy/08/2009                  ------ ------- ------ ----------------------- C..--------- --------------- ------- ----- 
 11 >A/Netherlands/602/2009           ------ ------- ------ ....................... ------------ ......C........ ------- ----- 
 12 >A/Italy/01/2009                  ------ ------- ------ ----------------------- ------------ --------------- ------- ----- 
 13 >A/Canada-NS/RV1538/2009          ...G.. ....C.. ....C. .........G......G...... .........T.. ...........G... ....... ..... 
 14 >A/Toronto/3181/2009              ------ ------- ------ --...------------------ ------------ --------------- ------- ----- 
 15 >A/Toronto/3184/2009              ------ ------- ------ --...------------------ ------------ --------------- ------- ----- 
 16 >A/Mexico/4486/2009               ...G.. ....... ....C. ..............A.....T.. .........T.. ............... ....... ..... 
 17 >A/Israel/MF-119/2009             ------ ------- ------ ----------------------- ------------ --------------- ------- ----- 
 18 >A/South Carolina/09/2009         ------ ------- ------ ..A.......G............ .T......A... ............... ....... ..... 
 19 >A/Catalonia/P148/2009            ------ ------- ------ --A.......G............ ------------ -.............. ------- ----- 
 20 >A/Castilla-La Mancha/GP9/2009    ------ ------- ------ --A.......G...--------- .T.......... ----.......---- ....... ..... 
 21 >A/Castilla-La Mancha/GP13/2009   ------ ------- ------ --A.......G...--------- .........T.. ----.......---- ....... ..... 
 22 >A/Valencia/GP4/2009              ------ ------- ------ --A.......G...--------- .........T.. ----.......---- ....... ..... 
 23 >A/Florida/04/2009                ...... ......A ------ .A..................... .........T.. ............... ....... ----- 
 24 >A/Pais Vasco/GP20/2009           ------ ------- ------ --............--------- .........T.. ----.......---- ....... ..... 
 25 >A/Mexico/4108/2009               ...... ....... ....C. ...............A...A..A .........T.. ............... ......A ..... 
 26 >A/NY/3099/2009                   A..... ....... ....C. .......T...G...A....... .........T.. ............... ....... ..... 
 27 >A/Delaware/03/2009               ------ ------- ------ .......T...G...A....... .........T.. ............... ------- ----- 
 28 >A/Delaware/02/2009               ------ ------- ------ .......T...G...A....... .........T.. ............... ------- ----- 
 29 >A/New Hampshire/02/2009          ------ ------- ------ .......T...G...A....... .........T.. ............... ------- ----- 
 30 >A/New Jersey/02/2009             ------ ------- ------ .......T...G...A....... .........T.. ............... ------- ..T.. 
 31 >A/New Jersey/04/2009             ------ ------- ------ .......T...G...A....... .........T.. ............... ....... ..T.. 
 32 >A/NY/1682/2009                   A..... ....... ....C. .......T...G...A....... .........T.. ............... ....... ..... 
 33 >A/Maryland/05/2009               A..... ....... ------ .......T...G...A....... .........T.. --------------- ------- ..... 
 34 >A/Paris/2592/2009                ------ ------- ------ ----------------------- ------------ --------TTA.TTA ------- ----- 
 35 >A/Texas/07/2009                  ...... .....T. ------ ..................T.... .........T.. --------------- ....... ----- 
 36 >A/Paris/2590/2009                ------ ------- ------ ----------------------- ------------ --------TTA.TTA ------- ----- 
 37 >A/CA/12/2009                     ------ ------- ------ A...................... ------------ --------------- ------- ----- 
 38 >A/Switzerland/01/2009            ------ ------- ------ ----------------------- ------------ --------------- A.----- ----- 
 39 >A/Mexico/3955/2009               ------ ------- ------ ........G......A...A..A ------------ ............... ------- ----- 
 40 >A/Italy/09/2009                  ------ ------- ------ ----------------------- C..--------- --------------- ------- ----- 
 41 >A/Auckland/4/2009                ------ ------- ------ ....................T.. ------------ G...G.......... ------- ----- 
 42 >A/Rio de Janeiro/125/2009        ------ ------- ------ ----------------------- ------------ --------------- ....CT- ----- 
 43 >A/Mexico/4269/2009               ------ ------- ------ ....................... ------------ ............... ------- ----- 
 44 >A/Italy/03/2009                  ------ ------- ------ ----------------------- C.---------- --------------- ------- ----- 
 45 >A/Brisbane/17/2009               ------ ------- ------ ......A..........A..T.. ------------ ...AG.......... A.A.... ----- 
 46 >A/Canada-ON/RV1526/2009          .....A ..A.... ...... ......W..........A..T.. ...A......AA ...AG.......... A.A.... .G... 
 47 >A/Ohio/07/2009                   .....A ..A.... ...... ......A..........A..T.. ...A......AA ...AG.......... A.A.... .G... 
 48 >A/Toronto/3146/2009              ------ ------- ------ -----.A.......--------- ------------ --------------- ------- ----- 
 49 >A/NY/12/2009                     ------ ------- ------ ......A.............T.. ...A......AA ...AG.......... ------- .G... 
 50 >A/Toronto/3141/2009              ------ ------- ------ -----.A.......--------- ------------ --------------- ------- ----- 
 51 >A/NY/23/2009                     ------ ------- ------ ......A.............T.. ...A......AA ...AG.......... ------- .G... 
 52 >A/NY/06/2009                     ------ ------- ------ ----------------------- ...A......AA ...AG.......... A.A.... .G... 
 53 >A/NY/34/2009                     ------ ------- ------ ......A.............T.. ------------ --------------- ------- ----- 
 54 >A/Nebraska/02/2009               ------ ------- ------ ----------------------- .....ATA.T.. ..G............ ------- ...A. 
 55 >A/Mexico/4627/2009               ------ ------- ------ ...............A....... ------------ --------------- ------- ----- 
 56 >A/Auckland/3/2009                ------ ------- ------ ----------------------- ------------ -..AG.......... ....... ----- 
 57 >A/NY/05/2009                     ------ ------- ------ ......A.............T.. ------------ --------------- ------- ----- 
 58 >A/Catalonia/P154/2009            ------ ------- ------ ----------------------- ------------ -......G....... ------- ----- 
 59 >A/NY/37/2009                     ------ ------- ------ ......A.............T.. ------------ --------------- ------- ----- 
 60 >A/Mexico/4516/2009               ------ ------- ------ ----------------------- ...A......A. --------------- ......A ----- 
 61 >A/Toronto/3170/2009              ------ ------- ------ --...------------------ ------------ --------------- ------- ----- 
 62 >A/Toronto/3145/2009              ------ ------- ------ -----.A.......--------- ------------ --------------- ------- ----- 
 63 >A/Canada-AB/RV1532/2009          .....A ....... ...... ......A.............T.. ...A......AA ...AG.......... A.A.... .G... 
 64 >A/NY/19/2009                     ------ ....... ...... ......A.............T.. ...A......AA ...AG.......... A.A.... .G... 
 65 >A/NY/3014/2009                   .....A ....... ...... ......A.............T.. ...A......AA ...AG.......... A.A.... .G... 
 66 >A/Massachusetts/06/2009          ------ ------- ------ ......A.............T.. ...A......AA ...AG.......... ------- ----- 
 67 >A/NY/10/2009                     ------ ....... ...... ......A.............T.. ...A......AA ...AG.......... A.A.... .G... 
 68 >A/CA/14/2009                     .....A ....... ...... ......A.............T.. ...A......AA ...AG.......... A.A.... .G... 
 69 >A/NY/39/2009                     ------ ------- ------ ......A.............T.. ------------ --------------- ------- ----- 
 70 >A/NY/31/2009                     ------ ------- ...... ......A.............T.. ...A......AA ...AG.......... ------- .G... 
 71 >A/Canada-ON/RV1529/2009          .....A ....... ...... ......A.............T.. ...A......AA ...AG.......... A.AA... .G... 
 72 >A/Canada-ON/RV1527/2009          .....A ....... ...... ......A.............T.. ...A......AA ...AG.......... A.AA... .G... 
 73 >A/NY/22/2009                     .....A ....... ------ ......A.............T.. ...A......AA ...AG.......... A.A.... ----- 
 74 >A/NY/3012/2009                   .....A ....... ...... ......A.............T.. ...A......AA ...AG.......... A.A.... .G... 
 75 >A/NY/20/2009                     ------ ------- ------ ......A.............T.. ...A......AA ...AG.......... A.A.... ----- 
 76 >A/NY/3049/2009                   .....A ....... ...... ......A.............T.. ...A......AA ...AG.......... A.A.... .G... 
 77 >A/NY/13/2009                     ------ ------- ...... ......A.............T.. ...A......AA ...AG.......... ------- ----- 
 78 >A/NY/3008/2009                   .....A ....... ...... ......A.............T.. ...A......AA ...AG.......... A.A.... .G... 
 79 >A/NY/35/2009                     ------ ------- ------ ......A.............T.. ------------ --------------- ------- ----- 
 80 >A/NY/24/2009                     ------ ------- ------ ......A.............T.. ------------ --------------- A.A.... ----- 
 81 >A/NY/18/2009                     .....A ....... ...... ......A.............T.. ...A......AA ...AG.......... A.A.... .G... 
 82 >A/Massachusetts/07/2009          ------ ------- ------ ......A.............T.. ...A......AA ...AG.......... ------- ----- 
 83 >A/Virginia/04/2009               .....A ------- ------ ......A.............T.. ...A......AA ...AG.......... ------- .G... 
 84 >A/NY/30/2009                     ------ ------- ------ ......A.............T.. ------------ --------------- ------- ----- 
 85 >A/NY/11/2009                     ------ ------- ...... ......A.............T.. ...A......AA ...AG.......... A.A.... .G... 
 86 >A/Nebraska/03/2009               .....A ....... ------ ......A.............T.. ...A......AA --------------- ------- .G... 
 87 >A/New Jersey/01/2009             ------ ------- ------ ......A.............T.. ...A......AA ...AG.......... ------- ----- 
 88 >A/Minas Gerais/65/2009           ------ ------- ------ ----------------------- ------------ --------------- ....CT- ----- 
 89 >A/Colorado/03/2009               ------ ------- ------ A.............A........ .....ATAA... ..G............ ------- ----- 
 90 >A/Israel/MF-70/2009              ------ ------- ------ ----------------------- ------------ --------------- ------- ----- 
 91 >A/Texas/09/2009                  ..A... C...... C..... ...............A.....A. ............ .A............. .A..... C...G 
 92 >A/Texas/08/2009                  ..A... C...... C..... ...............A.....A. ............ ............... .A..... ----- 
 93 >A/Texas/04/2009                  ..A... C...... C..... ...............A.....A. ............ ............... .A..... ....G 
 94 >A/North Carolina/05/2009         ------ C...... ------ ...............A.....A. ............ ............... ------- ----- 
 95 >A/Texas/05/2009                  ------ C...... C..... ...............A.....A. ............ ............... .A..... ....G 
 96 >A/Texas/22/2009                  ------ C...... ------ ...............A.....A. ............ .A............. .A..... C...G 
 97 >A/Kansas/02/2009                 ------ ------- ------ ...............A.....A. ............ .A............. ------- ----- 
 98 >A/Texas/06/2009                  ------ ------- ------ ...............A.....A. ............ ............... .A..... ....G 
 99 >A/Israel/G-645/2009              ------ ------- ------ ----------------------- ------------ --------------- ------- ----- 
100 >A/Korea/01/2009                  ...... ....... ...... ....................... ...A......A. ...A........... ....... ..... 
101 >A/Colombia/450/2009              ------ ------- ------ ------.......---------- ------------ --------------- ------- ----- 
102 >A/Nonthaburi/102/2009            ...... ....... ...... ....................T.. ...A......A. ...AG.......... ....... ..... 
103 >A/Israel/G-640/2009              ------ ------- ------ ----------------------- ------------ --------------- ------- ----- 
104 >A/Tennessee/05/2009              ------ ------- ------ ....................... ............ ............... ------- ..... 
105 >A/Rio de Janeiro/118/2009        ------ ------- ------ ----------------------- ------------ --------------- ....CT- ----- 
106 >A/Mexico/4635/2009               ------ ------- ------ ....................T.. ------------ --------------- ------- ----- 
107 >A/Mexico/4603/2009               ...... ....... ...... ....................T.. ...A......A. ...RR.......... ....... ..... 
108 >A/Mexico/4595/2009               ------ ------- ------ ....................T.. ------------ --------------- ------- ----- 
109 >A/Mexico/4604/2009               ...... ....... ...... ....................T.. ...A......A. ...AG.......... ....... ..... 
110 >A/Texas/23/2009                  ------ ....... ------ ....................T.. ------------ ...AG.......... ....... ..... 
111 >A/Mexico/4575/2009               ------ ------- ------ ....................T.. ------------ ...AG.......... ------- ----- 
112 >A/Mexico/4482/2009               ------ ....... ...... ....................T.. ...A......A. ...AG.......... .A..... ----- 
113 >A/Wisconsin/08/2009              ------ ------- ------ ....................T.. ...A......A. --------------- ------- ..... 
114 >A/Michigan/02/2009               ------ ------- ...... ....................T.. ...A......A. ...AG.......... A...... ..... 
115 >A/Mexico/4502/2009               ------ ------- ------ ..................T.T.. ------------ --------------- ------- ----- 
116 >A/Minnesota/02/2009              ...... .....T. ------ ----------------------- .........T.. ............... ....... ..... 
117 >A/NY/04/2009                     ------ ------- ------ ......A.G...........T.. ------------ --------------- ------- ----- 
118 >A/NY/15/2009                     ------ ------- ...... ----------------------- ...A......AA ...AG.......... A.A.... .G... 
119 >A/Catalonia/P154/2009            ------ ------- ------ --..A.................. ------------ --------------- ------- ----- 
120 >A/Paris/2591/2009                ------ ------- ------ ----------------------- ------------ --------TTA.TTA ------- ----- 
121 >A/Italy/06/2009                  ------ ------- ------ --A.......G..T--------- ------------ --------------- ------- ----- 
122 >A/Catalonia/P48/2009             ------ ------- ------ ----------------------- ------------ -....A......... ....... ----- 
123 >A/Kansas/03/2009                 ------ ------- ------ .A..................... ..C.A....T.. --------------- ------- ..... 
124 >A/Paris/2604/2009                ------ ------- ------ ----------------------- ------------ --------TTA.TTA ------- ----- 
125 >A/CA/08/2009                     .G..C. ....... ..C..T ...C........AA......... ............ --------------- ....... ..... 
126 >A/CA/07/2009                     .G..C. ....... ..C..T ...C........AA......... ............ .......G....... ....... ..... 
127 >A/CA/09/2009                     ------ ------- ------ ...C.A......A---------- ------------ .......G....... ....... ----- 
128 >A/CA/04/2009                     .G..C. ....... ..C..T ...C.A......AA......... ............ .......G....... ....... ..... 
129 >A/Mexico/4115/2009               ------ ....... ------ ....................... ............ ............... ....... ..... 
130 >A/Arizona/01/2009                ------ ------- ------ ....................... ............ ............... ....... ..... 
131 >A/Narita/1/2009                  ------ ------- ------ ....................... ------------ --------------- ------- ----- 
132 >A/Arizona/02/2009                ...... ......A ------ ....................... .........T.. ............... ....... ----- 
133 >A/New Mexico/04/2009             ------ ------- ------ ....................... .........T.. ......C........ ------- ..... 
134 >A/Mexico/4646/2009               ------ ------- ------ ....................... ------------ --------------- ....... ----- 
135 >A/Mexico/4593/2009               ------ ------- ------ ....................... ------------ ...AG.......... ------- ----- 
136 >A/Washington/09/2009             ...G.. ------- ------ ....................... .........T.. --------------- ------- ..... 
137 >A/Mexico/4176/2009               ------ ------- ------ ....................... ------------ .....A......... ------- ----- 
138 >A/NY/1669/2009                   ...G.. ....... ....C. ....................... ..C.A....T.. .....A......... ....... ..... 
139 >A/Catalonia/P186/2009            ------ ------- ------ --..................... ------------ -....A......... ....... ----- 
140 >A/Denmark/513/2009               ------ ------- ------ ....................... ------------ .....A......... ....... ..... 
141 >A/Catalonia/P53/2009             ------ ------- ------ --..................... ------------ -....A......... ....... ----- 
142 >A/Sw/Alberta/OTH-33-8/2009       ...... ....... .G..C. A...................... .........T.. ..G............ ....... ...A. 
143 >A/CA/06/2009                     ...... ...G... .G..C. A...................... .........T.. ..G............ ....... ...A. 
144 >A/CA/10/2009                     ------ ------- ------ A...................... ------------ --------------- ....... ----- 
145 >A/CA/13/2009                     ------ ------- ------ A...................... ------------ --------------- ------- ----- 
146 >A/CA/05/2009                     ...... ....... .G..C. A...................... ......T..T.. ..G............ ....... ----- 
147 >A/CA/11/2009                     ------ ------- ------ A...................... ------------ --------------- ------- ----- 
148 >A/Mexico/InDRE4487/2009          ...... ....... ...... ....................... ............ ............... ....... ..... 
149 >A/Regensburg/Germany/01/2009     ------ ------- ------ --....................- ------------ -...........--- ....--- ----- 
150 >A/Mexico/InDRE4114/2009          ...... ...G... ...... ........G.............. ............ ............... ....... ..... 
151 >A/Toronto/3178/2009              ------ ------- ------ --...------------------ ------------ --------------- ------- ----- 
152 >A/Canada-NS/RV1536/2009          ...G.. .T..C.. ...AC. .........G......G...... .........T.. ...........G... ....... ..... 
153 >A/Canada-NS/RV1535/2009          ...G.. .T..C.. ...AC. .........G......G...... .........T.. ...........G... ....... ..... 
154 >A/swine-flu/index/2009-02-01     ...... ....... ...... ....................... ............ ............... ....... ..... 
                                                                                                                               
---Index------------------------------GAGATG TCGATCG AATGAG CGCTGGTGAATAGGGGAGCGCGG TCTGCGCGGCGG AGAGAGAACCGACAT GGGGACG TAGCA 
-codon-position-----------------------1  2    2  2     121  1111111 2  1 1  11 11      111  12     111         1    12   11  1 
                                      011112 0011112 000011 00000000000001111111111 000000001111 000000011111111 0000000 00000 
                                      723581 4417792 556879 00123666788880011223456 012236680112 022377900002333 4566889 03477 
                                      910776 5760690 687048 23497458137791879893064 836994672144 748148445683123 9207113 96537 
                                      988723 0011052 180616 27583087673712038260834 427879997838 503626549200790 2209563 47685

gsgs · Aug 18, 2010

Re: swine flu sequences (thread from h5n1experts)

the 43 mutations in the Alberta swine

Code:

                                      00000000000000011111111111111111222222 0000000000000000011111111111111122222 0000000000011111111222 00000000000000000000000000000000000000000000001111111111111111111111111 0000000000000000000000000000000001111111111111 000000000000000000000000000000000000011111111111 00000000000000000000000 0000000000000000000000 
                                      00012244456777902233333555667778000122 0000113344467899911133567779999901122 3555566888901136789001 00011111122223333344555666666677777788888888990000011122222333444455666 0000000001111122222222333345666680000111111233 000112222223333333334444677777777899900000012333 01113445566668888888889 0001122223344466777788 
                                      47874825843149761905579379892587279618 0023482857803201706989140562369931602 5456837029347977478240 12323344401891567834027244568801158923367779021156827916889379067867489 0011146883778945667789689927046672258112348424 017064448891125568990115322234568724504456853123 00189392500671112457883 3590356791604557237816 
                                      22875203174479008481370070058552803310 3585321100932535391297271802624538429 4981800632049447186865 92780125779682163145756203891726761572773791042428023883126018853139499 8901277462236641470628546764495997947783436839 525790473785624881368153001382686305504792050790 82196822806595673299233 6442382901704691185853 
-codon-position-----------------------  1 2   111  111 1 1  1 2         2     21222   2      12 1 2    221 2 2 1         1211      1    2 11121211   11   1 21   1111    2  1 21   1    1 2    1   1 1  11 2 1  1 2 12 21 2 12 112     12  1 1112  1 11121  1  2 2  21 11121 11 12     1   1  1    2 11         1 2          212 1121  1    1 1 1 2211  221 1222 
---Index------------------------------CTAAAGATGCGGAGAAACGATACCATGAATCTTCGGAG GACTACCGTCAGTCACACGGGTTAAGTAACCCGGGGC TCTAATTGCGCTTACGAGGGTT GCGTACACTGCATTGGGACGTCGCGTTCCGAATGGAGGACTATGGAGCCGGGGAGAAGCGAACGGAGAGAT CTCAAGATTCCAAACGCTGAAGATTCCGAGTCGGAGGACGCGAGAG ACAAGGTGAGTTGAGCCGCCAGTCCTGAAAACGGAAAAATCCGTACAT TAAGCAGGAGCAGACTTTCCCGG CCTTGTCGATATGGGGGCACGC 
142 >A/Sw/Alberta/OTH-33-8/2009       .......A.T.T..C..T.....T.C....T....... ..............G..G...CC.....G.T.....T .A..G........G..C..A.C AA.......................A...................G..T...................... ........C..................AG.C.......TT...... ........GAC.....T....................T.......... ...........G......T.... .........C.A.....A...A       43     43 ,     43     43    142:>A/Sw/Alberta/OTH-33-8/2009       
                                             n n n  n  n     . .    .                      .  n   n.     n n     .  n  .        .  n  . n nn                       n                   .  n                               n                  nn n       nn               nnn     n                    n                      n      n              n n     n   n

33n,10.

143 >A/CA/06/2009                     ......G.A....................C...TA... ...............T........G............ ....G...........C..... .A.............A....................................................... ......................................T....... ........G....................................... ....................... .................A....       14     14 ,     14     14    143:>A/CA/06/2009                     
144 >A/CA/10/2009                     -------------------------------------- .------------------------------------ ---------------------- .A..................................................................... ---------------------------------------------- ------------------------------------------------ -...................... ----------------------      214    214 ,      1      1    144:>A/CA/10/2009                     
145 >A/CA/13/2009                     -------------------------------------- .------------------------------------ ---------------------- .A..................................................................... ---------------------------------------------- ------------------------------------------------ ----------------------- ----------------------      236    236 ,      1      1    145:>A/CA/13/2009                     
146 >A/CA/05/2009                     ...................................... .............A....................... ....G...........C..... .A..................................................................... ....................C..........T......T....... ........G....................................... C...................... ----------------------       31     31 ,      9      9    146:>A/CA/05/2009                     
147 >A/CA/11/2009                     -------------------------------------- .------------------------------------ ---------------------- .A..................................................................... ---------------------------------------------- ------------------------------------------------ ----------------------- ----------------------      236    236 ,      1      1    147:>A/CA/11/2009                     
148 >A/Mexico/InDRE4487/2009          ....G................................. ..................................... ........A............. ....................................................................... .............................................. ................................................ ....................... ......................        2      2 ,      2      2    148:>A/Mexico/InDRE4487/2009          
154 >A/swine-flu/index/2009-02-01     ...................................... ..................................... ...................... ....................................................................... .............................................. ................................................ ....................... ......................        0      0 ,      0      0    154:>A/swine-flu/index/2009-02-01     
                                                                                                                                                                                                                                                                                                                                                                 
---Index------------------------------CTAAAGATGCGGAGAAACGATACCATGAATCTTCGGAG GACTACCGTCAGTCACACGGGTTAAGTAACCCGGGGC TCTAATTGCGCTTACGAGGGTT GCGTACACTGCATTGGGACGTCGCGTTCCGAATGGAGGACTATGGAGCCGGGGAGAAGCGAACGGAGAGAT CTCAAGATTCCAAACGCTGAAGATTCCGAGTCGGAGGACGCGAGAG ACAAGGTGAGTTGAGCCGCCAGTCCTGAAAACGGAAAAATCCGTACAT TAAGCAGGAGCAGACTTTCCCGG CCTTGTCGATATGGGGGCACGC 
-codon-position-----------------------  1 2   111  111 1 1  1 2         2     21222   2      12 1 2    221 2 2 1         1211      1    2 11121211   11   1 21   1111    2  1 21   1    1 2    1   1 1  11 2 1  1 2 12 21 2 12 112     12  1 1112  1 11121  1  2 2  21 11121 11 12     1   1  1    2 11         1 2          212 1121  1    1 1 1 2211  221 1222 
                                      00000000000000011111111111111111222222 0000000000000000011111111111111122222 0000000000011111111222 00000000000000000000000000000000000000000000001111111111111111111111111 0000000000000000000000000000000001111111111111 000000000000000000000000000000000000011111111111 00000000000000000000000 0000000000000000000000 
                                      00012244456777902233333555667778000122 0000113344467899911133567779999901122 3555566888901136789001 00011111122223333344555666666677777788888888990000011122222333444455666 0000000001111122222222333345666680000111111233 000112222223333333334444677777777899900000012333 01113445566668888888889 0001122223344466777788 
                                      47874825843149761905579379892587279618 0023482857803201706989140562369931602 5456837029347977478240 12323344401891567834027244568801158923367779021156827916889379067867489 0011146883778945667789689927046672258112348424 017064448891125568990115322234568724504456853123 00189392500671112457883 3590356791604557237816 
                                      22875203174479008481370070058552803310 3585321100932535391297271802624538429 4981800632049447186865 92780125779682163145756203891726761572773791042428023883126018853139499 8901277462236641470628546764495997947783436839 525790473785624881368153001382686305504792050790 82196822806595673299233 6442382901704691185853

gsgs · Aug 18, 2010

Re: swine flu sequences (thread from h5n1experts)

---------posted: 2009/05/16---------------
#differences
(discarding the # of available segments, some sequences are short
these give naturally few differences but may not be much related.
OTOH a high number of differences indicates separate evolution
(since ~Feb.2009))

Code:

                                         1   2   3   4   5   6   7   8   9  10  11  12  13  14  15  16  17  18  19  20  21  22  23  24  25  26  27  28  29  30  31  32  33  34  35  36  37  38  39  40  41  42  43  44  45  46  47  48  49  50  51  52  53  54  55  56  57  58  59  60  61  62  63  64  65  66  67  68  69  70  71  72  73  74  75  76  77  78  79  80  81  82  83  84  85  86  87  88  89  90  91  92  93  94  95  96  97  98  99 100 101 102 103 104 105 106 107 108 109 110 111 112 113 114 115 116 117 118 119 120 121 122 123 124 125 126 127 128 129 130 131 132 133 134 135 136 137 138 139 140 141 142 143 144 145 146 147 148 149 150 151 152 153 154   PB2 PB1  PA  HA  NP  NA   M  NS
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
  1 >A/Indiana/09/2009                   0   0  17   4   7  10   7   4  10   1   9   0  18   2   2  19   0  12   6  10   7   7  16   8  16  16  10  11  11  10  10  15  12   6  13   6   5   2   9   2   8   2   6   2  11  25  27   1  19   1  16  13   5   9   4   6   5   3   5   8   5   1  23  22  22  15  23  22   4  16  24  24  21  25  17  25  16  22   4   6  23  15  15   4  20  15  17   3  15   0  24  18  18  17  18  17  11  13   0  20   0  25   0  12   2   4  20   3  22  14   7  21   9  17   4  11   5  14   3   7   5   4   9   6  17  21   8  21  12  10   2  16   8   3   7   5   5  15   6   5   6  40  17   3   3  18   3  14   5  18   2  18  17  13     0  20   6  24  35  25   9   0    22#   10    4945   5541      1:>A/Indiana/09/2009                
  2 >A/Auckland/2/2009                   0   0   0   0   1   0   0   0   1   0   0   0   1   0   0   1   0   0   0   0   0   0   0   1   1   0   0   0   0   0   0   0   0   0   1   0   0   2   0   0   0   2   0   0   2   2   2   0   0   0   0   2   0   0   0   0   0   0   0   1   0   0   2   2   2   0   2   2   0   0   3   3   2   2   2   3   0   2   0   2   2   0   0   0   2   0   0   3   0   0   1   1   1   0   1   1   0   2   0   0   0   1   0   0   2   0   1   0   1   0   0   1   0   1   0   0   0   2   0   1   0   0   0   0   0   0   0   0   0   0   0   0   0   1   0   0   0   0   0   0   0   2   0   0   0   1   0   0   0   1   0   0   0   0     0  21   0   0   0   0   9   0     9#    0     540   5201      2:>A/Auckland/2/2009                
  3 >A/Texas/15/2009                    17   0   0   0   7  11   7   5  10   2   9   0  16   1   1  16   0  11   6  11  10  10  11  11  13  13   9  10  10  12  12  12   9   6  10   6   5   2   9   3   8   2   6   3  11  19  22   2  19   2  16  13   5  12   4   6   5   1   5   5   4   2  18  17  17  12  18  17   4  15  19  18  14  19  14  21  12  17   4   6  19  12  17   4  18  11  14   3  12   0  18   9  12  10  12  14   8  13   0  14   1  18   0  11   2   4  13   3  15  12   7  12   8  14   4  11   5  13   1   7   5   4  11   6   9  11   6  11   7   9   2  11   9   3   7   7   5  12   6   7   6  36  14   3   3  12   3   7   5  12   1  15  13   7     0   4   0  24  21  25   9  31    19#    9    4686   5514      3:>A/Texas/15/2009                  
  4 >A/NY/09/2009                        4   0   0   0   0   0   0   0   0   0   0   0   2   0   0   1   0   0   0   0   0   0   2   0   0   0   0   0   0   0   0   0   0   0   2   0   0   0   0   0   0   0   0   0   0   1   1   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   1   0   0   0   0   0   0   1   0   3   0   0   0   0   1   0   0   0   0   0   0   0   0   0   1   1   1   1   1   1   0   0   0   0   0   2   0   0   0   0   0   0   0   2   0   0   0   0   0   2   0   0   0   0   0   0   0   0   0   0   0   1   0   0   0   3   0   0   0   0   0   1   0   0   0   7   2   0   0   1   0   0   0   1   0   2   2   0     0   4   0   0   0   0   0   0     4#    0     804   5800      4:>A/NY/09/2009                     
  5 >A/Stockholm/28/2009                 7   1   7   0   0   0   5   0   8   0   6   0   6   1   1   7   0   5   4   5   5   5   5   6   5   5   4   4   4   4   5   6   4   6   6   6   5   2   4   0   5   2   3   0   8   8  10   2   9   2   6   5   4   1   2   5   4   1   4   2   4   2   9   8   8   5   8   8   3   5   9   9   8   9   8   9   5   8   3   6   8   5   5   3   9   3   7   3   5   0   9   4   4   3   4   5   3   5   0   6   1   8   0   6   2   3   6   2   7   5   4   7   2   7   2   2   4   5   3   7   5   3   4   6   6   7   7   8   3   4   2   5   3   4   5   2   3   4   4   4   4  15   6   4   3   5   3   3   3   6   1   5   5   3     0  21   0  28   0  12  19   0    20#    4    2259   5200      5:>A/Stockholm/28/2009              
  6 >A/Italy/02/2009                    10   0  11   0   0   0   0  14   0  11   0   0  10   0   0  10   0   9   0   9  10  10  10  11  10  10  10  10  10  10  10  10  10   0  10   0   0   0   0  11   0   0   0  12   0  10  10   0  10   0  10  10   0  10   0   0   0   0   0  10   0   0  10  10  10  10  10  10   0  10  10  10  10  10  10  11  10  10   0   0  10  10  10   0  10  10  10   0  10   0  10  10  10  10  10  10  10  10   0  10   0  11   0  10   0   0  10   0  11   0   0  10  10  10   0  10   0  10   0   0   0   0  11   0  10  10   0  10  10  11   0  10  10   0   0  10   0  11   0   0   0  11  10   0   0  11   0  10   0  10   0  10  10  10     0  21   0   0 355   0   2   0   201#    5     292   5405      6:>A/Italy/02/2009                  
  7 >A/Christchurch/2/2009               7   0   7   0   5   0   0   0   9   0   7   0   5   0   0   8   0   5   4   3   3   3   6   4   8   8   6   6   6   6   6   7   4   7   5   7   4   2   8   0   7   2   5   0  10  10  12   2  11   2   8   6   4   3   3   5   4   2   4   1   3   2  10   9   9   7   9   9   3   7  11  10   9  10   9  10   7   9   3   5   9   7   7   3  10   3   9   3   6   0  11   6   6   7   6   7   6   7   0   6   1  10   0   7   2   3   7   2   8   7   6   8   2   8   3   3   4   6   2   8   4   3   3   7   3   6   6   7   3   4   1   5   4   2   6   1   4   4   4   4   4  15   6   2   2   6   2   3   3   7   0   4   4   3     0  21   0  18   0  25   9   0    18#    5    2687   5201      7:>A/Christchurch/2/2009            
  8 >A/Italy/04/2009                     4   0   5   0   0  14   0   0   0   3   0   0   4   0   0   4   0   5   0   5   4   4   4   4   4   4   4   4   4   4   4   4   4   0   4   0   0   0   0   3   0   0   0   2   0   4   4   0   4   0   4   4   0   4   0   0   0   0   0   4   0   0   4   4   4   4   4   4   0   4   4   4   4   4   4   5   4   4   0   0   4   4   4   0   4   4   4   0   4   0   4   4   4   4   4   4   4   4   0   4   0   4   0   4   0   0   4   0   4   0   0   4   4   4   0   4   0   4   0   0   0   0   5   0   4   4   0   4   4   5   0   4   4   0   0   4   0   5   0   0   0   5   4   0   0   5   0   4   0   4   0   4   4   4     0  21   0   0 144   0   0   0   129#    2     185   5476      8:>A/Italy/04/2009                  
  9 >A/Auckland/1/2009                  10   1  10   0   8   0   9   0   0   0   9   0  10   0   0   9   0   8   6   5   5   5   9   6  11  11   8   8   8   8   9  10   5   6   7   6   5   3  10   0   3   3   7   0   7   7   9   2   7   2   4   4   3   4   4   3   3   3   3   2   3   2   7   6   6   3   6   6   2   3   8   7   6   7   6   7   3   6   2   5   6   3   3   2   7   2   5   4   8   0  14   9   9   9   9  10   8  10   0   7   0   7   0   9   3   2   6   1   5   4   2   5   1   5   2   5   3   4   3   7   4   5   4   6   6  10   9  11   6   7   2   8   6   4   4   2   6   7   7   7   7  18   9   4   3   8   3   6   6  10   0   9   9   6     0  21   0  19   0  21  21   0    20#    5    2644   5292      9:>A/Auckland/1/2009                
 10 >A/Italy/08/2009                     1   0   2   0   0  11   0   3   0   0   0   0   1   0   0   1   0   2   0   2   1   1   1   1   1   1   1   1   1   1   1   1   1   0   1   0   0   0   0   1   0   0   0   1   0   1   1   0   1   0   1   1   0   1   0   0   0   0   0   1   0   0   1   1   1   1   1   1   0   1   1   1   1   1   1   2   1   1   0   0   1   1   1   0   1   1   1   0   1   0   1   1   1   1   1   1   1   1   0   1   0   1   0   1   0   0   1   0   1   0   0   1   1   1   0   1   0   1   0   0   0   0   2   0   1   1   0   1   1   2   0   1   1   0   0   1   0   2   0   0   0   2   1   0   0   2   0   1   0   1   0   1   1   1     0  21   0   0  42   0   0   0    38#    0     185   5476     10:>A/Italy/08/2009                  
 11 >A/Netherlands/602/2009              9   0   9   0   6   0   7   0   9   0   0   0   8   0   0   9   0   7   6   3   3   3   8   3   9  10   8   8   8   8   8   9   4   7   4   7   4   0  10   0   8   0   7   0   9  10  12   1  13   1  10   6   4   5   3   8   4   5   4   0   3   1  10   9   9   9   9   9   3   9  10   9   9  10   9  10   9   9   3   3   9   9   9   3  10   3  11   0   8   0  12   7   7   9   7   8   8   7   0   9   0  11   0   9   0   3   8   2   9   9   8   9   2   9   3   5   4   6   1   7   3   6   3   7   4   9   8  10   5   6   1   7   4   1   8   1   6   6   6   6   6  15   8   2   2   7   2   5   5   8   0   8   8   5     0  21   0  17   0  39   0   0    26#    5    2184   6315     11:>A/Netherlands/602/2009           
 12 >A/Italy/01/2009                     0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   1   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   1   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   1   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0     0  21   0   0   0   0   1   0     1#    0     140   5347     12:>A/Italy/01/2009                  
 13 >A/Canada-NS/RV1538/2009            18   1  16   2   6  10   5   4  10   1   8   0   0   0   0  17   0  11   5   9   6   6  13   7  15  16   6   7   7   9  10  15  11   7  14   7   5   2   8   2   7   3   5   2  11  26  28   2  18   2  15  13   5   9   4   6   5   2   5   6   3   2  26  21  24  11  22  24   4  16  25  25  18  26  14  27  13  23   4   7  25  11  19   4  21  17  13   4  11   0  27  16  19  11  17  16   7  13   0  20   1  26   0  10   3   4  19   3  21  14   6  17   8  17   4  12   5  15   3   8   4   4   9   7  19  22   7  22   9   9   2  14   6   4   6   7   4  13   6   7   6  50  22   4   3  15   3  14   5  19   0  10   7  12     9  12  11  23  16  18  19  31    17#   10    5961   5527     13:>A/Canada-NS/RV1538/2009          
 14 >A/Toronto/3181/2009                 2   0   1   0   1   0   0   0   0   0   0   0   0   0   0   0   0   1   1   1   1   1   0   2   0   0   0   0   0   0   0   0   0   0   1   0   0   0   1   0   0   0   0   0   0   0   2   0   1   0   1   0   0   0   0   0   0   0   0   0   0   0   1   0   0   0   0   0   0   0   0   0   0   0   0   1   0   0   0   0   0   0   0   0   0   0   0   0   0   0   1   0   0   0   0   0   0   0   0   0   0   1   0   1   0   0   0   0   0   0   0   0   0   0   0   0   0   0   1   0   1   0   1   0   1   1   1   1   0   0   0   1   0   0   0   0   0   0   0   0   1   0   1   0   0   0   0   0   0   0   0   0   0   0     0  21   0   5   0   0   0   0     5#    0     396   6315     14:>A/Toronto/3181/2009              
 15 >A/Toronto/3184/2009                 2   0   1   0   1   0   0   0   0   0   0   0   0   0   0   0   0   1   1   1   1   1   0   2   0   0   0   0   0   0   0   0   0   0   1   0   0   0   1   0   0   0   0   0   0   0   2   0   1   0   1   0   0   0   0   0   0   0   0   0   0   0   1   0   0   0   0   0   0   0   0   0   0   0   0   1   0   0   0   0   0   0   0   0   0   0   0   0   0   0   1   0   0   0   0   0   0   0   0   0   0   1   0   1   0   0   0   0   0   0   0   0   0   0   0   0   0   0   1   0   1   0   1   0   1   1   1   1   0   0   0   1   0   0   0   0   0   0   0   0   1   0   1   0   0   0   0   0   0   0   0   0   0   0     0  21   0   5   0   0   0   0     5#    0     389   6315     15:>A/Toronto/3184/2009              
 16 >A/Mexico/4486/2009                 19   1  16   1   7  10   8   4   9   1   9   0  17   0   0   0   0  12   6   9   6   6  15   7  14  15   9  10  10  10  11  14  11   6  16   6   6   2   9   2   6   2   6   2  10  23  25   2  17   2  14  13   4   9   5   6   4   2   4   8   3   2  23  18  21  12  19  21   3  14  22  22  18  23  15  24  13  20   3   6  22  12  18   3  19  15  14   3  12   0  26  17  18  13  16  16  10  14   0  19   0  23   0  11   2   3  16   2  18  10   5  16   7  15   3  11   4  14   4   7   4   4  10   6  18  21   6  21   9  10   3  16   7   5   7   8   5  12   7   6   7  50  21   5   4  16   4  13   5  18   0  17  14  11     9   8   6  24  29  19  18   8    17#   10    5965   5533     16:>A/Mexico/4486/2009               
 17 >A/Israel/MF-119/2009                0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   1   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0     0  21   0   0   0   0   0   0     0#    0     102   5527     17:>A/Israel/MF-119/2009             
 18 >A/South Carolina/09/2009           12   0  11   0   5   9   5   5   8   2   7   0  11   1   1  12   0   0   0   2   3   3   8   8  10  10   8   9   9   9   9   9   8   6   9   6   5   2   7   3   6   2   4   3   9  15  18   2  16   2  13  10   5   9   4   4   5   1   5   6   4   2  15  14  14  11  14  14   4  12  16  15  13  15  13  16  11  14   4   6  15  11  14   4  15  10  13   3   9   0  14   7   8   8   8  10   7  10   0  11   1  13   0   8   2   4  10   3  12   6   5  11   7  11   4   6   5  10   3   7   1   2  10   6   8  10   6   9   4   6   2   7   6   3   5   6   3   8   4   3   4  25   9   3   3  10   3   4   3   8   1  10   8   4     0  21   0  23  27  12   9   8    18#    7    3899   5338     18:>A/South Carolina/09/2009         
 19 >A/Catalonia/P148/2009               6   0   6   0   4   0   4   0   6   0   6   0   5   1   1   6   0   0   0   0   0   0   4   4   6   6   5   5   5   5   5   6   5   6   5   6   4   0   7   0   5   0   4   0   7   7   9   2   9   2   7   2   5   1   4   4   5   1   5   0   4   2   7   6   6   6   6   6   4   6   7   6   6   7   6   7   6   6   4   4   6   6   6   4   7   4   8   0   4   0   9   4   4   6   4   5   5   4   0   5   1   8   0   6   0   4   5   3   6   6   5   6   3   6   4   1   5   2   3   6   1   2   3   6   5   6   6   7   2   3   2   4   3   2   5   2   3   3   4   3   4  10   4   2   2   3   2   2   3   4   1   5   5   2     0  21   0  23   0  12   0   0    19#    3    2048   6315     19:>A/Catalonia/P148/2009            
 20 >A/Castilla-La Mancha/GP9/2009      10   0  11   0   5   9   3   5   5   2   3   0   9   1   1   9   0   2   0   0   3   3   5   8   7   7   7   8   8   8   8   8   7   3   7   3   4   2   4   3   4   2   3   3   6  12  15   2  11   2  11   9   3   8   2   3   4   1   4   6   4   2  13  12  12   9  12  12   3  10  13  13  11  13  11  14   9  12   3   5  13   9  12   3  12   9  11   3   8   0  11   5   6   5   6   7   4   8   0   9   1   9   0   7   2   3   8   2   9   3   3   8   6   8   2   6   4   9   3   4   1   1   9   3   8  10   6   9   4   5   2   7   6   3   4   6   3   8   3   3   4  18   7   2   2   8   2   4   3   6   1   8   6   4     0  21   0  30  27  12   9   8    20#    5    2883   5326     20:>A/Castilla-La Mancha/GP9/2009    
 21 >A/Castilla-La Mancha/GP13/2009      7   0  10   0   5  10   3   4   5   1   3   0   6   1   1   6   0   3   0   3   0   0   2   5   4   4   4   5   5   5   5   5   4   3   4   3   4   2   4   2   4   2   3   2   6  11  14   2  10   2  10   8   3   5   2   3   4   1   4   5   4   2  12  11  11   8  11  11   3   9  12  12  10  12  10  13   8  11   3   5  12   8  11   3  11   8  10   3   7   0  10   4   5   4   5   6   3   7   0   8   1   8   0   6   2   3   7   2   8   3   3   7   5   7   2   3   4   8   3   4   1   1   6   3   7   9   6   8   3   4   2   4   3   3   4   3   3   5   3   3   4  15   4   2   2   5   2   3   3   5   1   5   3   3     0  21   0  30  16  12   9   8    17#    4    2882   5332     21:>A/Castilla-La Mancha/GP13/2009   
 22 >A/Valencia/GP4/2009                 7   0  10   0   5  10   3   4   5   1   3   0   6   1   1   6   0   3   0   3   0   0   2   5   4   4   4   5   5   5   5   5   4   3   4   3   4   2   4   2   4   2   3   2   6  11  14   2  10   2  10   8   3   5   2   3   4   1   4   5   4   2  12  11  11   8  11  11   3   9  12  12  10  12  10  13   8  11   3   5  12   8  11   3  11   8  10   3   7   0  10   4   5   4   5   6   3   7   0   8   1   8   0   6   2   3   7   2   8   3   3   7   5   7   2   3   4   8   3   4   1   1   6   3   7   9   6   8   3   4   2   4   3   3   4   3   3   5   3   3   4  15   4   2   2   5   2   3   3   5   1   5   3   3     0  21   0  30  16  12   9   8    17#    4    2883   5332     22:>A/Valencia/GP4/2009              
 23 >A/Florida/04/2009                  16   0  11   2   5  10   6   4   9   1   8   0  13   0   0  15   0   8   4   5   2   2   0   3  11  12   6   7   7   6   6  11   9   6  13   6   5   2   8   2   7   2   5   2  10  19  22   1  15   1  12   9   5   5   4   5   5   2   5   5   3   1  20  15  18  11  16  18   4  11  19  18  17  19  13  20  11  17   4   6  18  11  14   4  14  14  13   3  11   0  18  12  12  11  10  11   7   9   0  13   0  20   0   8   2   4  13   3  15  11   6  13   6  11   4   8   5   9   2   7   3   3   4   6  12  15   6  15   6   6   2  11   4   3   6   6   4  11   4   4   4  38  16   3   3  12   3   8   3  14   0  14  12   7    10  12   0  22  16  19   9   0    16#    8    4968   5521     23:>A/Florida/04/2009                
 24 >A/Pais Vasco/GP20/2009              8   1  11   0   6  11   4   4   6   1   3   0   7   2   2   7   0   8   4   8   5   5   3   0   5   5   4   5   5   5   6   6   4   4   5   4   4   3   4   2   4   2   3   2   7  12  15   2  10   2  10   9   3   5   2   4   4   1   4   6   5   2  13  12  12   8  12  12   3   9  13  13  11  13  11  14   8  12   3   6  13   8  11   3  12   8  10   3   7   0  11   5   6   4   6   7   3   8   0   9   0   9   0   6   2   3   8   2   9   4   3   8   5   8   2   4   4   9   3   5   5   2   6   4   8  10   7   9   4   5   2   5   3   4   4   3   3   6   4   4   4  16   5   3   2   6   2   4   4   6   2   6   4   4     0  21   0  32  16  12  19   8    19#    5    2882   5329     24:>A/Pais Vasco/GP20/2009           
 25 >A/Mexico/4108/2009                 16   1  13   0   5  10   8   4  11   1   9   0  15   0   0  14   0  10   6   7   4   4  11   5   0   9   5   6   6   6   7   8   6   6  13   6   7   2   3   2   8   2   6   2  12  21  23   2  17   2  14  10   7   6   4   5   5   1   7   4   3   2  21  17  19  12  18  19   6  14  20  20  16  21  15  22  13  18   6   9  20  12  17   6  19  14  14   3  12   0  20  11  12   8  11  11   6  10   0  15   1  21   0   9   2   6  14   5  16  11   7  15   8  15   6   6   7  11   5   7   4   3   9   6  15  17   6  17   6   8   4  12   5   6   7   8   5  10   7   6   7  46  17   6   5  12   5   9   4  14   0  15  12   7     6   4   6  32  16  12  18   8    15#    9    5965   5529     25:>A/Mexico/4108/2009               
 26 >A/NY/3099/2009                     16   0  13   0   5  10   8   4  11   1  10   0  16   0   0  15   0  10   6   7   4   4  12   5   9   0   2   3   3   3   3   3   1   6  13   6   7   2   8   2   9   2   7   2  12  22  24   3  18   3  15  10   7   7   4   4   7   1   7   5   3   3  22  17  20  13  18  20   6  15  21  21  17  22  15  23  14  19   6   8  21  13  19   6  19  15  15   3  13   0  21  12  13   9  11  11   7  10   0  16   2  22   0  10   2   6  15   5  17  11   8  15   8  15   6   7   7  11   5   7   5   2   9   6  15  18   7  18   6   8   4  13   6   5   8   9   6  11   6   6   6  46  18   5   5  13   5  10   5  15   0  16  13   8    10   4   6  32  16  18   9   8    15#    9    5955   5529     26:>A/NY/3099/2009                   
 27 >A/Delaware/03/2009                 10   0   9   0   4  10   6   4   8   1   8   0   6   0   0   9   0   8   5   7   4   4   6   4   5   2   0   1   1   0   0   1   0   6   6   6   6   0   6   2   7   0   5   2   8  12  15   3  15   3  12   6   6   4   3   4   6   1   6   4   3   3  12  11  11  11  11  11   5  11  12  11  11  12  11  12  11  11   5   5  11  11  11   5  12   9  13   0  11   0   9   4   4   6   4   5   5   5   0  10   2  12   0   8   0   5   9   4  11   7   6  10   7  10   5   2   6   6   4   6   5   2   7   6   8  10   6   9   4   6   3   5   4   3   6   3   4   6   5   4   5  18   6   4   4   7   4   4   4   7   0   7   6   4     0  21   0  26  16  12   0   0    19#    5    3018   5364     27:>A/Delaware/03/2009               
 28 >A/Delaware/02/2009                 11   0  10   0   4  10   6   4   8   1   8   0   7   0   0  10   0   9   5   8   5   5   7   5   6   3   1   0   0   1   1   2   1   6   7   6   6   0   6   2   7   0   5   2   8  13  16   3  16   3  13   7   6   5   3   4   6   1   6   5   3   3  13  12  12  12  12  12   5  12  13  12  12  13  12  13  12  12   5   5  12  12  12   5  13  10  14   0  12   0  10   5   5   7   5   6   6   6   0  11   2  13   0   9   0   5  10   4  12   7   6  11   8  11   5   3   6   7   4   6   5   2   8   6   9  11   6  10   5   7   3   6   5   3   6   4   4   7   5   4   5  19   7   4   4   8   4   5   4   8   0   8   7   5     0  21   0  26  22  12   0   0    21#    6    3018   5368     28:>A/Delaware/02/2009               
 29 >A/New Hampshire/02/2009            11   0  10   0   4  10   6   4   8   1   8   0   7   0   0  10   0   9   5   8   5   5   7   5   6   3   1   0   0   1   1   2   1   6   7   6   6   0   6   2   7   0   5   2   8  13  16   3  16   3  13   7   6   5   3   4   6   1   6   5   3   3  13  12  12  12  12  12   5  12  13  12  12  13  12  13  12  12   5   5  12  12  12   5  13  10  14   0  12   0  10   5   5   7   5   6   6   6   0  11   2  13   0   9   0   5  10   4  12   7   6  11   8  11   5   3   6   7   4   6   5   2   8   6   9  11   6  10   5   7   3   6   5   3   6   4   4   7   5   4   5  19   7   4   4   8   4   5   4   8   0   8   7   5     0  21   0  26  22  12   0   0    21#    6    3018   5368     29:>A/New Hampshire/02/2009          
 30 >A/New Jersey/02/2009               10   0  12   0   4  10   6   4   8   1   8   0   9   0   0  10   0   9   5   8   5   5   6   5   6   3   0   1   1   0   0   2   1   6   6   6   6   0   6   2   7   0   5   2   8  14  17   3  17   3  14   8   6   7   3   4   6   1   6   4   3   3  14  13  13  11  13  13   5  13  14  13  11  14  11  15  11  13   5   5  14  11  15   5  14  11  13   0  11   0  12   4   6   6   6   8   5   7   0  12   2  13   0   9   0   5  10   4  12   8   6  10   8  11   5   4   6   8   4   6   5   2   9   6   9  11   6  10   5   7   3   5   5   3   6   5   4   7   5   5   5  23   8   4   4   7   4   5   4   8   0   9   7   5     0  21   0  26  16  12   0  19    19#    6    3387   5364     30:>A/New Jersey/02/2009             
 31 >A/New Jersey/04/2009               10   0  12   0   5  10   6   4   9   1   8   0  10   0   0  11   0   9   5   8   5   5   6   6   7   3   0   1   1   0   0   2   1   6   7   6   6   2   6   2   7   2   5   2  10  16  19   3  17   3  14  10   6   7   3   4   6   1   6   5   3   3  16  15  15  11  15  15   5  13  17  16  13  16  13  17  11  15   5   7  16  11  15   5  16  11  13   3  11   0  13   5   7   6   7   9   5   9   0  12   2  14   0   9   2   5  11   4  13   8   6  11   8  12   5   4   6  10   4   7   5   2   9   6   9  11   6  10   5   7   3   5   5   4   6   5   4   7   5   5   5  25   8   4   4   8   4   5   4   9   0   9   7   5     0  21   0  26  16  12   9  19    18#    7    3905   5332     31:>A/New Jersey/04/2009             
 32 >A/NY/1682/2009                     15   0  12   0   6  10   7   4  10   1   9   0  15   0   0  14   0   9   6   8   5   5  11   6   8   3   1   2   2   2   2   0   0   6  12   6   6   2   7   2   8   2   6   2  11  21  23   3  17   3  14  10   6   7   3   5   6   2   6   5   3   3  21  16  19  12  17  19   5  14  20  20  16  21  14  22  13  18   5   7  20  12  18   5  18  14  14   3  12   0  20  11  12   8  10  10   6   9   0  15   2  21   0   9   2   5  14   4  16  10   7  14   7  14   5   7   6  11   4   7   5   3   8   6  14  17   7  17   5   7   3  12   5   4   7   8   5  10   6   5   6  45  17   4   4  12   4   9   5  14   0  15  12   7    10   4   6  26  16  19   9   8    14#    8    5961   5530     32:>A/NY/1682/2009                   
 33 >A/Maryland/05/2009                 12   0   9   0   4  10   4   4   5   1   4   0  11   0   0  11   0   8   5   7   4   4   9   4   6   1   0   1   1   1   1   0   0   0  11   0   6   0   6   2   5   0   5   2   6  14  17   3  11   3  11   5   6   5   3   0   6   0   6   4   3   3  15  10  13   9  11  13   5  10  13  12  11  14   9  16   9  12   5   5  14   9  15   5  10  14  10   0  10   0  11   7   8   6   6   7   4   6   0   9   2  14   0   7   0   5   8   4   9   7   4   7   7   7   5   5   6   5   4   0   5   0   8   0  11  12   5  12   4   5   3  10   3   3   3   8   3   8   4   3   4  33  14   4   4   8   4   6   4  10   0  12   9   5    10   4   0  26  16   0   0   8    15#    6    3945   5545     33:>A/Maryland/05/2009               
 34 >A/Paris/2592/2009                   6   0   6   0   6   0   7   0   6   0   7   0   7   0   0   6   0   6   6   3   3   3   6   4   6   6   6   6   6   6   6   6   0   0   0   0   0   0   6   0   6   0   6   0   6   6   6   0   6   0   6   6   0   6   0   6   0   6   0   0   0   0   6   6   6   6   6   6   0   6   6   6   6   6   6   7   6   6   0   0   6   6   6   0   6   0   6   0   6   0   6   6   6   6   6   6   6   6   0   6   0   7   0   6   0   0   6   0   7   6   6   6   0   6   0   7   0   6   0   1   0   6   0   0   0   6   6   6   6   6   0   6   6   0   6   0   6   6   6   6   6   6   6   0   0   7   0   6   3   6   0   7   7   6     0  21   0   0   0 212   2   0   116#    3     327   5076     34:>A/Paris/2592/2009                
 35 >A/Texas/07/2009                    13   1  10   2   6  10   5   4   7   1   4   0  14   1   1  16   0   9   5   7   4   4  13   5  13  13   6   7   7   6   7  12  11   0   0   0   6   2   8   2   5   2   5   2   9  19  22   2  10   2  10   7   6   3   5   1   6   0   6   6   4   2  20  14  18   9  15  18   5   9  19  18  17  19  12  20   9  17   5   8  18   9  13   5  12  16  10   3  10   0  16  14  14  10  11  11   6  10   0  12   0  19   0   7   2   5  13   4  14  10   4  11   7   9   3   6   6   7   4   1   4   1   7   0  15  16   5  16   7   6   3  14   3   5   3   8   3  12   5   4   5  35  17   5   4  13   4  10   4  15   1  15  13   9    14  12   0  29  16   0  18   0    19#    8    4094   5520     35:>A/Texas/07/2009                  
 36 >A/Paris/2590/2009                   6   0   6   0   6   0   7   0   6   0   7   0   7   0   0   6   0   6   6   3   3   3   6   4   6   6   6   6   6   6   6   6   0   0   0   0   0   0   6   0   6   0   6   0   6   6   6   0   6   0   6   6   0   6   0   6   0   6   0   0   0   0   6   6   6   6   6   6   0   6   6   6   6   6   6   7   6   6   0   0   6   6   6   0   6   0   6   0   6   0   6   6   6   6   6   6   6   6   0   6   0   7   0   6   0   0   6   0   7   6   6   6   0   6   0   7   0   6   0   1   0   6   0   0   0   6   6   6   6   6   0   6   6   0   6   0   6   6   6   6   6   6   6   0   0   7   0   6   3   6   0   7   7   6     0  21   0   0   0 212   2   0   116#    3     327   5076     36:>A/Paris/2590/2009                
 37 >A/CA/12/2009                        5   0   5   0   5   0   4   0   5   0   4   0   5   0   0   6   0   5   4   4   4   4   5   4   7   7   6   6   6   6   6   6   6   0   6   0   0   0   8   0   5   0   5   0   6   6   8   3   6   3   6   0   6   0   5   0   6   0   6   0   3   3   6   5   5   5   5   5   5   5   6   5   5   6   5   6   5   5   5   5   5   5   5   5   5   5   6   0   3   0   6   5   5   6   5   5   5   5   0   4   2   6   0   6   0   5   4   4   4   5   4   4   4   4   5   0   6   0   3   0   5   0   5   0   6   6   6   7   3   3   3   4   3   3   3   3   3   3   3   3   3   6   3   2   2   2   2   3   3   5   0   5   5   3     0  21   0  28   0   0   0   0    28#    3    1311   6315     37:>A/CA/12/2009                     
 38 >A/Switzerland/01/2009               2   2   2   0   2   0   2   0   3   0   0   0   2   0   0   2   0   2   0   2   2   2   2   3   2   2   0   0   0   0   2   2   0   0   2   0   0   0   0   0   0   2   0   0   1   1   1   0   0   0   0   1   0   0   0   2   0   0   0   2   0   0   1   1   1   0   1   1   0   0   1   1   1   1   1   2   0   1   0   1   1   0   0   0   1   0   0   2   0   0   3   3   3   0   3   3   0   3   0   2   0   3   0   0   2   0   2   0   3   2   0   3   0   1   0   2   0   1   0   1   0   2   0   0   2   2   2   2   2   2   0   2   0   3   0   0   0   2   2   2   2   2   2   2   0   2   0   2   2   2   0   2   2   2     0  21   0   0   0   0  40   0    37#    1     266   5376     38:>A/Switzerland/01/2009            
 39 >A/Mexico/3955/2009                  9   0   9   0   4   0   8   0  10   0  10   0   8   1   1   9   0   7   7   4   4   4   8   4   3   8   6   6   6   6   6   7   6   6   8   6   8   0   0   0   9   0   7   0  10  10  12   2  13   2  10   2   8   1   5   4   8   1   8   0   4   2  10   9   9   9   9   9   7   9  10   9   9  10   9  10   9   9   7   7   9   9   9   7  10   7  11   0   8   0  10   5   5   7   5   6   6   5   0   9   1  11   0   9   0   7   8   6   9   9   8   9   6   9   7   1   6   2   6   6   5   2   7   6   8   9   6  10   5   6   5   7   6   5   8   5   6   6   7   6   7  15   8   6   6   7   6   5   5   6   1   8   8   5     0  21   0  38   0  12   0   0    27#    6    2185   6315     39:>A/Mexico/3955/2009               
 40 >A/Italy/09/2009                     2   0   3   0   0  11   0   3   0   1   0   0   2   0   0   2   0   3   0   3   2   2   2   2   2   2   2   2   2   2   2   2   2   0   2   0   0   0   0   0   0   0   0   1   0   2   2   0   2   0   2   2   0   2   0   0   0   0   0   2   0   0   2   2   2   2   2   2   0   2   2   2   2   2   2   3   2   2   0   0   2   2   2   0   2   2   2   0   2   0   2   2   2   2   2   2   2   2   0   2   0   2   0   2   0   0   2   0   2   0   0   2   2   2   0   2   0   2   0   0   0   0   3   0   2   2   0   2   2   3   0   2   2   0   0   2   0   3   0   0   0   3   2   0   0   3   0   2   0   2   0   2   2   2     0  21   0   0  79   0   0   0    70#    1     179   5545     40:>A/Italy/09/2009                  
 41 >A/Auckland/4/2009                   8   0   8   0   5   0   7   0   3   0   8   0   7   0   0   6   0   6   5   4   4   4   7   4   8   9   7   7   7   7   7   8   5   6   5   6   5   0   9   0   0   0   6   0   5   5   7   2   8   2   5   2   3   3   4   3   3   2   3   0   3   2   5   4   4   4   4   4   2   4   5   4   4   5   4   5   4   4   2   2   4   4   4   2   5   2   6   0   7   0  11   6   6   8   6   7   7   6   0   7   1   6   0   8   0   2   4   1   4   4   3   4   1   4   2   3   3   2   3   6   4   3   4   6   5   8   7   9   4   5   2   6   5   2   5   2   5   5   5   5   5  14   7   3   3   6   3   4   4   7   0   7   7   4     0  21   0  19   0  20   0   0    19#    4    2169   6315     41:>A/Auckland/4/2009                
 42 >A/Rio de Janeiro/125/2009           2   2   2   0   2   0   2   0   3   0   0   0   3   0   0   2   0   2   0   2   2   2   2   2   2   2   0   0   0   0   2   2   0   0   2   0   0   2   0   0   0   0   0   0   4   4   4   0   0   0   0   4   0   0   0   2   0   0   0   2   0   0   4   4   4   0   4   4   0   0   5   5   4   4   4   5   0   4   0   4   4   0   0   0   4   0   0   0   0   0   3   3   3   0   3   3   0   4   0   2   0   2   0   0   0   0   3   0   2   2   0   3   0   3   0   2   0   4   0   1   0   2   0   0   2   2   2   2   2   2   0   2   0   3   0   0   0   2   2   2   2   3   2   2   0   2   0   2   0   2   0   2   2   2     0  21   0   0   0   0  43   0    41#    1     335   5355     42:>A/Rio de Janeiro/125/2009        
 43 >A/Mexico/4269/2009                  6   0   6   0   3   0   5   0   7   0   7   0   5   0   0   6   0   4   4   3   3   3   5   3   6   7   5   5   5   5   5   6   5   6   5   6   5   0   7   0   6   0   0   0   7   7   9   2  10   2   7   2   5   1   4   4   5   1   5   0   3   2   7   6   6   6   6   6   4   6   7   6   6   7   6   7   6   6   4   4   6   6   6   4   7   4   8   0   5   0   9   4   4   6   4   5   5   4   0   6   1   8   0   6   0   4   5   3   6   6   5   6   3   6   4   1   5   2   3   6   4   2   4   6   5   6   5   7   2   3   2   4   3   2   5   2   3   3   4   3   4  12   5   3   3   4   3   2   3   5   0   5   5   2     0  21   0  23   0  12   0   0    19#    4    2185   6315     43:>A/Mexico/4269/2009               
 44 >A/Italy/03/2009                     2   0   3   0   0  12   0   2   0   1   0   0   2   0   0   2   0   3   0   3   2   2   2   2   2   2   2   2   2   2   2   2   2   0   2   0   0   0   0   1   0   0   0   0   0   2   2   0   2   0   2   2   0   2   0   0   0   0   0   2   0   0   2   2   2   2   2   2   0   2   2   2   2   2   2   3   2   2   0   0   2   2   2   0   2   2   2   0   2   0   2   2   2   2   2   2   2   2   0   2   0   2   0   2   0   0   2   0   2   0   0   2   2   2   0   2   0   2   0   0   0   0   2   0   2   2   0   2   2   2   0   2   2   0   0   2   0   2   0   0   0   3   2   0   0   2   0   2   0   2   0   2   2   2     0  21   0   0  85   0   0   0    75#    1     163   5628     44:>A/Italy/03/2009                  
 45 >A/Brisbane/17/2009                 11   2  11   0   8   0  10   0   7   0   9   0  11   0   0  10   0   9   7   6   6   6  10   7  12  12   8   8   8   8  10  11   6   6   9   6   6   1  10   0   5   4   7   0   0   1   2   0   5   0   2   0   2   3   5   4   2   3   2   3   3   0   2   1   1   1   1   1   1   1   3   2   1   2   1   2   1   1   1   1   1   1   1   1   2   1   3   5   8   0  15  10  10   9  10  11   8  11   0   8   1   8   0   9   4   3   7   2   6   5   2   6   2   4   3   5   2   0   4   7   4   6   5   6   8  11   9  12   7   8   3   9   6   6   4   3   6   8   9   8   9  19  10   6   4  10   4   7   8  11   0  10  10   7     0  21   0  20   0  15  20   0    18#    5    2666   5218     45:>A/Brisbane/17/2009               
 46 >A/Canada-ON/RV1526/2009            25   2  19   1   8  10  10   4   7   1  10   0  26   0   0  23   0  15   7  12  11  11  19  12  21  22  12  13  13  14  16  21  14   6  19   6   6   1  10   2   5   4   7   2   1   0   5   1   6   1   3   0   3  13   5   4   3   3   3   5   3   1   7   4   5   2   5   5   2   3   6   6   3   7   2   8   3   4   2   2   6   2   5   2   5   5   4   5  15   0  29  19  21  14  19  19  11  17   0  16   1  18   0  13   4   3  13   2  13   9   2  10   4   8   3  16   3   1   4   7   4   6  13   6  20  24   9  24  12  13   3  20  11   6   4  13   6  21   9   9   9  56  28   6   4  22   4  16   8  21   0  26  23  14     8   8   8  22  19  15  19  13    15#    9    5961   5536     46:>A/Canada-ON/RV1526/2009          
 47 >A/Ohio/07/2009                     27   2  22   1  10  10  12   4   9   1  12   0  28   2   2  25   0  18   9  15  14  14  22  15  23  24  15  16  16  17  19  23  17   6  22   6   8   1  12   2   7   4   9   2   2   5   0   0   8   0   5   1   4  14   7   4   4   3   4   6   5   0   8   5   6   4   6   6   3   4   7   7   5   8   4   9   4   5   3   3   7   4   7   3   6   7   6   5  18   0  31  21  23  17  21  22  14  20   0  18   1  20   0  16   4   5  15   4  15  11   4  12   7  10   5  17   4   1   6   7   6   6  16   6  22  26  11  26  15  16   5  23  14   8   6  16   8  23  11  11  11  58  30   8   6  24   6  18  10  23   2  28  25  16     8   8   4  32  25  15  19  13    17#   10    5961   5539     47:>A/Ohio/07/2009                   
 48 >A/Toronto/3146/2009                 1   0   2   0   2   0   2   0   2   0   1   0   2   0   0   2   0   2   2   2   2   2   1   2   2   3   3   3   3   3   3   3   3   0   2   0   3   0   2   0   2   0   2   0   0   1   0   0   0   0   0   0   0   0   1   0   1   0   1   0   0   0   0   0   0   0   0   0   0   0   0   0   0   1   0   1   0   0   0   0   0   0   0   0   0   0   1   0   1   0   1   1   1   1   1   1   1   1   0   1   1   1   0   3   0   2   1   1   1   1   1   1   1   1   1   0   1   0   1   0   3   0   2   0   3   3   3   4   1   1   1   1   1   1   1   1   1   1   1   1   1   3   1   1   1   1   1   1   2   2   0   2   2   1     0  21   0  22   0   0   0   0    21#    0     452   6315     48:>A/Toronto/3146/2009              
 49 >A/NY/12/2009                       19   0  19   0   9  10  11   4   7   1  13   0  18   1   1  17   0  16   9  11  10  10  15  10  17  18  15  16  16  17  17  17  11   6  10   6   6   0  13   2   8   0  10   2   5   6   8   0   0   0   5   3   2  16   5   4   2   5   2   2   4   0   5   4   4   4   4   4   1   4   5   4   4   5   4   6   4   4   1   1   5   4   6   1   5   1   6   0  18   0  21  13  15  15  15  17  14  16   0  13   1  10   0  16   0   3   9   2   9   7   5   7   4   8   3  13   2   3   4   6   5   6  13   6  11  18  11  17  12  14   3  14  14   3   7   9   9  16   9  10   9  31  17   4   4  16   4  12   8  15   1  18  16  12     0  21   0  21  19  35   0  13    23#    7    3379   5378     49:>A/NY/12/2009                     
 50 >A/Toronto/3141/2009                 1   0   2   0   2   0   2   0   2   0   1   0   2   0   0   2   0   2   2   2   2   2   1   2   2   3   3   3   3   3   3   3   3   0   2   0   3   0   2   0   2   0   2   0   0   1   0   0   0   0   0   0   0   0   1   0   1   0   1   0   0   0   0   0   0   0   0   0   0   0   0   0   0   1   0   1   0   0   0   0   0   0   0   0   0   0   1   0   1   0   1   1   1   1   1   1   1   1   0   1   1   1   0   3   0   2   1   1   1   1   1   1   1   1   1   0   1   0   1   0   3   0   2   0   3   3   3   4   1   1   1   1   1   1   1   1   1   1   1   1   1   3   1   1   1   1   1   1   2   2   0   2   2   1     0  21   0  22   0   0   0   0    21#    0     452   6315     50:>A/Toronto/3141/2009              
 51 >A/NY/23/2009                       16   0  16   0   6  10   8   4   4   1  10   0  15   1   1  14   0  13   7  11  10  10  12  10  14  15  12  13  13  14  14  14  11   6  10   6   6   0  10   2   5   0   7   2   2   3   5   0   5   0   0   0   2  13   5   2   2   3   2   2   4   0   2   1   1   1   1   1   1   1   2   1   1   2   1   3   1   1   1   1   2   1   3   1   2   1   3   0  15   0  18  10  12  12  12  14  11  13   0  10   1   7   0  13   0   3   6   2   6   4   2   4   4   5   3  10   2   0   4   6   5   4  13   6  11  15   8  14   9  11   3  11  11   3   4   9   6  13   7   7   7  28  14   4   4  13   4   9   6  12   1  15  13   9     0  21   0  21  19  15   0  13    18#    6    3384   5378     51:>A/NY/23/2009                     
 52 >A/NY/06/2009                       13   2  13   0   5  10   6   4   4   1   6   0  13   0   0  13   0  10   2   9   8   8   9   9  10  10   6   7   7   8  10  10   5   6   7   6   0   1   2   2   2   4   2   2   0   0   1   0   3   0   0   0   0  13   0   4   0   3   0   5   0   0   0   0   0   0   0   0   0   0   1   1   0   0   0   2   0   0   0   0   1   0   2   0   1   0   1   5  10   0  15   8  10   6  10  12   6  12   0   8   0   6   0   7   4   0   7   0   7   3   0   5   2   4   0  12   0   0   0   7   0   6   8   6   7  11   5   9   8  10   0   9   8   3   1   6   3  12   5   6   5  24  11   2   0  12   0   8   4  10   0  12  10   8     0  21   0   0  19  15  19  13    17#    4    2613   5346     52:>A/NY/06/2009                     
 53 >A/NY/34/2009                        5   0   5   0   4   0   4   0   3   0   4   0   5   0   0   4   0   5   5   3   3   3   5   3   7   7   6   6   6   6   6   6   6   0   6   0   6   0   8   0   3   0   5   0   2   3   4   0   2   0   2   0   0   0   5   0   2   0   2   0   3   0   2   1   1   1   1   1   1   1   2   1   1   2   1   2   1   1   1   1   1   1   1   1   1   1   2   0   5   0   6   5   5   6   5   5   5   5   0   4   1   4   0   6   0   3   2   2   2   3   2   2   2   2   3   0   2   0   4   0   4   0   5   0   6   6   4   7   3   3   3   4   3   3   3   3   3   3   4   3   4   8   5   4   4   4   4   3   4   5   0   5   5   3     0  21   0  21   0   0   0   0    20#    2    1311   6315     53:>A/NY/34/2009                     
 54 >A/Nebraska/02/2009                  9   0  12   0   1  10   3   4   4   1   5   0   9   0   0   9   0   9   1   8   5   5   5   5   6   7   4   5   5   7   7   7   5   6   3   6   0   0   1   2   3   0   1   2   3  13  14   0  16   0  13  13   0   0   0   5   0   2   0   7   0   0  13  13  13  10  13  13   0  13  13  13  10  13  10  15  10  13   0   0  14  10  15   0  14  10  11   0   2   0  13   5   8   6   8  10   6   9   0  13   0  12   0   8   0   0  11   0  13   5   3  10   8  12   0   9   0  13   0   6   0   3   8   6   7  10   2   8   7   9   0   5   7   0   4   6   2   9   2   4   2  15   4   0   0   3   0   7   1   8   0   9   7   7     0  21   0   0  35  18   0  31    27#    5    2093   5385     54:>A/Nebraska/02/2009               
 55 >A/Mexico/4627/2009                  4   0   4   0   2   0   3   0   4   0   3   0   4   0   0   5   0   4   4   2   2   2   4   2   4   4   3   3   3   3   3   3   3   0   5   0   5   0   5   0   4   0   4   0   5   5   7   1   5   1   5   0   5   0   0   0   5   0   5   0   3   1   5   4   4   4   4   4   4   4   5   4   4   5   4   5   4   4   4   4   4   4   4   4   4   4   5   0   4   0   3   2   2   3   2   2   2   2   0   3   0   5   0   5   0   4   3   3   3   4   3   3   3   3   4   0   5   0   3   0   3   0   4   0   5   5   3   6   2   2   2   3   2   2   2   2   2   2   3   2   3   7   4   3   3   3   3   2   3   4   0   4   4   2     0  21   0  21   0   0   0   0    21#    2    1311   6315     55:>A/Mexico/4627/2009               
 56 >A/Auckland/3/2009                   6   0   6   0   5   0   5   0   3   0   8   0   6   0   0   6   0   4   4   3   3   3   5   4   5   4   4   4   4   4   4   5   0   6   1   6   0   2   4   0   3   2   4   0   4   4   4   0   4   0   2   4   0   5   0   0   0   5   0   1   0   0   4   4   4   2   4   4   0   2   5   5   4   4   4   5   2   4   0   2   4   2   2   0   5   0   3   3   5   0   9   5   5   5   5   6   5   6   0   5   0   4   0   5   2   0   5   0   4   2   2   4   0   4   0   5   0   4   0   7   0   6   0   6   0   5   5   5   4   5   0   5   5   1   3   0   5   5   5   5   5  11   5   0   0   6   0   4   4   6   0   5   5   4     0  21   0   0   0  30   9   0    22#    3    1371   5201     56:>A/Auckland/3/2009                
 57 >A/NY/05/2009                        5   0   5   0   4   0   4   0   3   0   4   0   5   0   0   4   0   5   5   4   4   4   5   4   5   7   6   6   6   6   6   6   6   0   6   0   6   0   8   0   3   0   5   0   2   3   4   1   2   1   2   0   2   0   5   0   0   0   2   0   3   1   2   1   1   1   1   1   1   1   2   1   1   2   1   2   1   1   1   1   1   1   1   1   1   1   2   0   5   0   6   5   5   6   5   5   5   5   0   4   2   4   0   6   0   3   2   2   2   3   2   2   2   2   3   0   2   0   4   0   5   0   5   0   6   6   5   7   3   3   3   4   3   3   3   3   3   3   4   3   4   8   5   4   4   4   4   3   4   5   0   5   5   3     0  21   0  21   0   0   0   0    21#    2    1311   6315     57:>A/NY/05/2009                     
 58 >A/Catalonia/P154/2009               3   0   1   0   1   0   2   0   3   0   5   0   2   0   0   2   0   1   1   1   1   1   2   1   1   1   1   1   1   1   1   2   0   6   0   6   0   0   1   0   2   0   1   0   3   3   3   0   5   0   3   3   0   2   0   5   0   0   0   0   0   0   3   3   3   3   3   3   0   3   3   3   3   3   3   4   3   3   0   0   3   3   3   0   4   0   4   0   2   0   5   1   1   2   1   2   2   1   0   4   0   4   0   2   0   0   3   0   4   3   3   4   0   4   0   2   0   3   0   6   0   3   0   6   0   0   0   0   1   2   0   2   2   0   4   0   2   2   2   2   2   6   2   0   0   2   0   1   1   1   0   2   2   1     0  21   0   0   0  20   0   0    19#    1     817   6315     58:>A/Catalonia/P154/2009            
 59 >A/NY/37/2009                        5   0   5   0   4   0   4   0   3   0   4   0   5   0   0   4   0   5   5   4   4   4   5   4   7   7   6   6   6   6   6   6   6   0   6   0   6   0   8   0   3   0   5   0   2   3   4   1   2   1   2   0   2   0   5   0   2   0   0   0   3   1   2   1   1   1   1   1   1   1   2   1   1   2   1   2   1   1   1   1   1   1   1   1   1   1   2   0   5   0   6   5   5   6   5   5   5   5   0   4   2   4   0   6   0   3   2   2   2   3   2   2   2   2   3   0   2   0   4   0   5   0   5   0   6   6   5   7   3   3   3   4   3   3   3   3   3   3   4   3   4   8   5   4   4   4   4   3   4   5   0   5   5   3     0  21   0  21   0   0   0   0    21#    2    1311   6315     59:>A/NY/37/2009                     
 60 >A/Mexico/4516/2009                  8   1   5   0   2  10   1   4   2   1   0   0   6   0   0   8   0   6   0   6   5   5   5   6   4   5   4   5   5   4   5   5   4   0   6   0   0   2   0   2   0   2   0   2   3   5   6   0   2   0   2   5   0   7   0   1   0   0   0   0   0   0   5   5   5   2   5   5   0   2   6   6   5   5   5   6   2   5   0   3   5   2   2   0   5   2   2   3   7   0   5   5   5   3   5   5   3   7   0   2   0   3   0   3   2   0   3   0   4   1   0   3   1   3   0   6   0   5   0   1   0   1   6   0   5   6   1   4   4   5   0   5   4   2   0   4   0   7   1   1   1  12   5   1   0   8   0   4   0   5   0   6   5   4     0  21   0   0  23   0  18   0    21#    2    1374   5332     60:>A/Mexico/4516/2009               
 61 >A/Toronto/3170/2009                 5   0   4   0   4   0   3   0   3   0   3   0   3   0   0   3   0   4   4   4   4   4   3   5   3   3   3   3   3   3   3   3   3   0   4   0   3   0   4   0   3   0   3   0   3   3   5   0   4   0   4   0   3   0   3   0   3   0   3   0   0   0   4   3   3   3   3   3   3   3   3   3   3   3   3   4   3   3   3   3   3   3   3   3   3   3   3   0   3   0   4   3   3   3   3   3   3   3   0   3   0   4   0   4   0   3   3   3   3   3   3   3   3   3   3   0   3   0   4   0   4   0   4   0   4   4   4   4   3   3   3   4   3   3   3   3   3   3   3   3   3   3   4   3   3   3   3   3   3   3   3   3   3   3     0  21   0  65   0   0   0   0    62#    2     401   6315     61:>A/Toronto/3170/2009              
 62 >A/Toronto/3145/2009                 1   0   2   0   2   0   2   0   2   0   1   0   2   0   0   2   0   2   2   2   2   2   1   2   2   3   3   3   3   3   3   3   3   0   2   0   3   0   2   0   2   0   2   0   0   1   0   0   0   0   0   0   0   0   1   0   1   0   1   0   0   0   0   0   0   0   0   0   0   0   0   0   0   1   0   1   0   0   0   0   0   0   0   0   0   0   1   0   1   0   1   1   1   1   1   1   1   1   0   1   1   1   0   3   0   2   1   1   1   1   1   1   1   1   1   0   1   0   1   0   3   0   2   0   3   3   3   4   1   1   1   1   1   1   1   1   1   1   1   1   1   3   1   1   1   1   1   1   2   2   0   2   2   1     0  21   0  21   0   0   0   0    20#    0     466   6315     62:>A/Toronto/3145/2009              
 63 >A/Canada-AB/RV1532/2009            23   2  18   0   9  10  10   4   7   1  10   0  26   1   1  23   0  15   7  13  12  12  20  13  21  22  12  13  13  14  16  21  15   6  20   6   6   1  10   2   5   4   7   2   2   7   8   0   5   0   2   0   2  13   5   4   2   3   2   5   4   0   0   1   4   1   2   4   1   1   5   5   3   6   1   7   1   3   1   1   5   1   6   1   3   5   3   5  15   0  29  19  21  13  17  18  11  17   0  16   1  18   0  13   4   3  13   2  13   8   2   8   4   7   3  17   2   0   4   7   5   6  13   6  20  24  10  24  11  13   3  21  11   6   4  15   6  21   9   9   9  56  28   6   4  22   4  16   8  21   1  26  23  14    16   4   4  21  19  15  19  13    14#    8    5961   5534     63:>A/Canada-AB/RV1532/2009          
 64 >A/NY/19/2009                       22   2  17   0   8  10   9   4   6   1   9   0  21   0   0  18   0  14   6  12  11  11  15  12  17  17  11  12  12  13  15  16  10   6  14   6   5   1   9   2   4   4   6   2   1   4   5   0   4   0   1   0   1  13   4   4   1   3   1   5   3   0   1   0   0   0   1   0   0   0   2   2   0   3   0   4   0   0   0   0   2   0   2   0   2   0   2   5  14   0  23  14  16  12  16  17  10  16   0  12   1  12   0  12   4   2   9   1   9   7   1   7   3   6   2  14   1   0   3   7   4   6  12   6  14  18   9  18  10  12   2  15  10   5   3   8   5  16   8   8   8  44  19   5   3  18   3  11   7  15   0  20  18  10     0   4   4  15  19  15  19  13    13#    7    5311   5538     64:>A/NY/19/2009                     
 65 >A/NY/3014/2009                     22   2  17   0   8  10   9   4   6   1   9   0  24   0   0  21   0  14   6  12  11  11  18  12  19  20  11  12  12  13  15  19  13   6  18   6   5   1   9   2   4   4   6   2   1   5   6   0   4   0   1   0   1  13   4   4   1   3   1   5   3   0   4   0   0   0   1   2   0   0   3   3   1   4   0   5   0   1   0   0   3   0   4   0   2   3   2   5  14   0  27  17  19  12  16  17  10  16   0  14   1  16   0  12   4   2  11   1  11   7   1   7   3   6   2  16   1   0   3   7   4   6  12   6  18  22   9  22  10  12   2  19  10   5   3  13   5  19   8   8   8  54  26   5   3  20   3  14   7  19   0  24  21  12    12   4   4  15  19  15  19  13    13#    7    5957   5537     65:>A/NY/3014/2009                   
 66 >A/Massachusetts/06/2009            15   0  12   0   5  10   7   4   3   1   9   0  11   0   0  12   0  11   6   9   8   8  11   8  12  13  11  12  12  11  11  12   9   6   9   6   5   0   9   2   4   0   6   2   1   2   4   0   4   0   1   0   1  10   4   2   1   3   1   2   3   0   1   0   0   0   0   0   0   0   1   0   0   1   0   1   0   0   0   0   0   0   0   0   1   0   2   0  14   0  14   9   9  11   9  10  10  10   0   7   1   5   0  11   0   2   4   1   4   2   1   3   2   3   2   8   1   0   3   6   4   4  10   6   9  13   7  12   7   9   2  10   9   2   3   6   5  11   6   5   6  23  11   3   3  12   3   7   5  10   0  12  11   7     0  21   0  15  19  15   0   0    16#    4    3018   5378     66:>A/Massachusetts/06/2009          
 67 >A/NY/10/2009                       23   2  18   1   8  10   9   4   6   1   9   0  22   0   0  19   0  14   6  12  11  11  16  12  18  18  11  12  12  13  15  17  11   6  15   6   5   1   9   2   4   4   6   2   1   5   6   0   4   0   1   0   1  13   4   4   1   3   1   5   3   0   2   1   1   0   0   1   0   0   3   3   1   4   0   5   0   1   0   0   3   0   2   0   2   1   2   5  14   0  24  15  17  13  17  18  10  16   0  13   1  13   0  12   4   2  10   1  10   8   1   8   3   6   2  15   1   0   3   7   4   6  12   6  15  19   9  19  11  12   2  16  10   5   3   8   5  17   8   8   8  45  20   5   3  19   3  12   7  16   0  21  19  11     0   8   4  15  19  15  19  13    13#    7    5311   5538     67:>A/NY/10/2009                     
 68 >A/CA/14/2009                       22   2  17   0   8  10   9   4   6   1   9   0  24   0   0  21   0  14   6  12  11  11  18  12  19  20  11  12  12  13  15  19  13   6  18   6   5   1   9   2   4   4   6   2   1   5   6   0   4   0   1   0   1  13   4   4   1   3   1   5   3   0   4   0   2   0   1   0   0   0   3   3   1   4   0   5   0   1   0   0   3   0   4   0   2   3   2   5  14   0  27  17  19  12  16  17  10  16   0  14   1  16   0  12   4   2  11   1  11   7   1   7   3   6   2  16   1   0   3   7   4   6  12   6  18  22   9  22  10  12   2  19  10   5   3  13   5  19   8   8   8  54  26   5   3  20   3  14   7  19   0  24  21  12    12   4   4  15  19  15  19  13    13#    7    5959   5536     68:>A/CA/14/2009                     
 69 >A/NY/39/2009                        4   0   4   0   3   0   3   0   2   0   3   0   4   0   0   3   0   4   4   3   3   3   4   3   6   6   5   5   5   5   5   5   5   0   5   0   5   0   7   0   2   0   4   0   1   2   3   0   1   0   1   0   1   0   4   0   1   0   1   0   3   0   1   0   0   0   0   0   0   0   1   0   0   1   0   1   0   0   0   0   0   0   0   0   0   0   1   0   4   0   5   4   4   5   4   4   4   4   0   3   1   3   0   5   0   2   1   1   1   2   1   1   1   1   2   0   1   0   3   0   4   0   4   0   5   5   4   6   2   2   2   3   2   2   2   2   2   2   3   2   3   7   4   3   3   3   3   2   3   4   0   4   4   2     0  21   0  15   0   0   0   0    15#    2    1311   6315     69:>A/NY/39/2009                     
 70 >A/NY/31/2009                       16   0  15   0   5  10   7   4   3   1   9   0  16   0   0  14   0  12   6  10   9   9  11   9  14  15  11  12  12  13  13  14  10   6   9   6   5   0   9   2   4   0   6   2   1   3   4   0   4   0   1   0   1  13   4   2   1   3   1   2   3   0   1   0   0   0   0   0   0   0   1   1   0   2   0   2   0   0   0   0   1   0   2   0   2   0   2   0  14   0  19  10  12  11  12  13  10  12   0  10   1   7   0  12   0   2   6   1   6   3   1   4   3   5   2  10   1   0   3   6   4   4  12   6  12  16   7  15   8  10   2  10  10   2   3   8   5  13   6   6   6  33  15   3   3  14   3   9   5  11   0  16  14   8     0  21   4  15  19  15   0  13    14#    5    4011   5463     70:>A/NY/31/2009                     
 71 >A/Canada-ON/RV1529/2009            24   3  19   0   9  10  11   4   8   1  10   0  25   0   0  22   0  16   7  13  12  12  19  13  20  21  12  13  13  14  17  20  13   6  19   6   6   1  10   2   5   5   7   2   3   6   7   0   5   0   2   1   2  13   5   5   2   3   2   6   3   0   5   2   3   1   3   3   1   1   0   2   2   5   2   6   1   2   1   2   4   1   4   1   4   3   3   6  15   0  28  18  20  13  18  19  11  18   0  15   1  17   0  13   5   3  12   2  12   9   2   9   4   8   3  16   2   1   4   7   4   7  13   6  19  23  10  23  12  14   3  20  11   7   4  13   6  20   9  10  10  55  27   7   4  21   4  15   9  20   0  25  22  13     8   4   4  20  19  15  29  13    14#    8    5961   5536     71:>A/Canada-ON/RV1529/2009          
 72 >A/Canada-ON/RV1527/2009            24   3  18   0   9  10  10   4   7   1   9   0  25   0   0  22   0  15   6  13  12  12  18  13  20  21  11  12  12  13  16  20  12   6  18   6   5   1   9   2   4   5   6   2   2   6   7   0   4   0   1   1   1  13   4   5   1   3   1   6   3   0   5   2   3   0   3   3   0   1   2   0   1   5   1   6   1   2   0   1   4   0   3   0   4   2   2   6  14   0  28  18  20  12  18  18  10  17   0  15   1  17   0  12   5   2  12   1  12   8   1   9   3   8   2  16   1   2   3   7   4   7  12   6  19  23  10  23  11  13   2  19  10   6   3  12   5  20   9   9   9  56  27   6   3  21   3  15   8  20   0  25  22  13     8   4   8  15  19  15  29  13    14#    8    5965   5535     72:>A/Canada-ON/RV1527/2009          
 73 >A/NY/22/2009                       21   2  14   0   8  10   9   4   6   1   9   0  18   0   0  18   0  13   6  11  10  10  17  11  16  17  11  12  12  11  13  16  11   6  17   6   5   1   9   2   4   4   6   2   1   3   5   0   4   0   1   0   1  10   4   4   1   3   1   5   3   0   3   0   1   0   1   1   0   0   2   1   0   2   0   3   0   0   0   0   1   0   1   0   1   2   2   5  14   0  21  15  15  12  13  14  10  14   0  10   1  13   0  11   4   2   8   1   8   6   1   6   2   4   2  13   1   0   3   7   4   6  10   6  14  18   9  18   9  11   2  18   9   5   3  10   5  16   8   7   8  43  21   5   3  17   3  11   7  17   0  19  17  10     8   4   0  15  19  15  19   0    13#    6    4968   5525     73:>A/NY/22/2009                     
 74 >A/NY/3012/2009                     25   2  19   1   9  10  10   4   7   1  10   0  26   0   0  23   0  15   7  13  12  12  19  13  21  22  12  13  13  14  16  21  14   6  19   6   6   1  10   2   5   4   7   2   2   7   8   1   5   1   2   0   2  13   5   4   2   3   2   5   3   1   6   3   4   1   4   4   1   2   5   5   2   0   1   7   2   3   1   1   5   1   4   1   4   4   3   5  15   0  29  19  21  14  19  19  11  17   0  16   2  18   0  13   4   3  13   2  13   9   2  10   4   8   3  16   2   1   4   7   5   6  13   6  20  24  10  24  12  13   3  20  11   6   4  13   6  21   9   9   9  56  28   6   4  22   4  16   8  21   0  26  23  14     8   8   8  21  19  15  19  13    15#    8    5957   5536     74:>A/NY/3012/2009                   
 75 >A/NY/20/2009                       17   2  14   0   8  10   9   4   6   1   9   0  14   0   0  15   0  13   6  11  10  10  13  11  15  15  11  12  12  11  13  14   9   6  12   6   5   1   9   2   4   4   6   2   1   2   4   0   4   0   1   0   1  10   4   4   1   3   1   5   3   0   1   0   0   0   0   0   0   0   2   1   0   1   0   1   0   0   0   0   0   0   0   0   1   0   2   5  14   0  17  12  12  11  12  13  10  14   0   9   1   8   0  11   4   2   7   1   7   4   1   6   2   4   2  10   1   0   3   7   4   6  10   6  11  15   9  14   9  11   2  12   9   5   3   6   5  13   8   7   8  27  13   5   3  15   3   9   7  13   0  14  13   9     0  21   0  15  19  15  19   0    16#    5    3536   5346     75:>A/NY/20/2009                     
 76 >A/NY/3049/2009                     25   3  21   3   9  11  10   5   7   2  10   1  27   1   1  24   1  16   7  14  13  13  20  14  22  23  12  13  13  15  17  22  16   7  20   7   6   2  10   3   5   5   7   3   2   8   9   1   6   1   3   2   2  15   5   5   2   4   2   6   4   1   7   4   5   1   5   5   1   2   6   6   3   7   1   0   1   4   1   1   6   1   5   1   4   6   3   6  15   1  30  19  22  15  20  21  11  18   1  17   2  19   1  14   5   3  14   2  14  11   2  10   5   8   3  19   2   2   4   8   5   7  14   7  21  25  10  25  14  14   3  21  12   6   4  14   6  22   9  10   9  57  29   6   4  22   4  17   8  22   1  27  24  15     8  25   4  15  19  15  19  24    16#    9    5953   5535     76:>A/NY/3049/2009                   
 77 >A/NY/13/2009                       16   0  12   0   5  10   7   4   3   1   9   0  13   0   0  13   0  11   6   9   8   8  11   8  13  14  11  12  12  11  11  13   9   6   9   6   5   0   9   2   4   0   6   2   1   3   4   0   4   0   1   0   1  10   4   2   1   3   1   2   3   0   1   0   0   0   0   0   0   0   1   1   0   2   0   1   0   0   0   0   0   0   0   0   2   0   2   0  14   0  16  10  10  11  10  10  10  10   0   8   1   6   0  11   0   2   5   1   5   2   1   4   2   4   2   8   1   0   3   6   4   4  10   6  11  15   7  14   7   9   2  10   9   2   3   6   5  12   6   5   6  29  13   3   3  14   3   8   5  10   0  14  13   7     0  21   4  15  19  15   0   0    14#    5    3646   5463     77:>A/NY/13/2009                     
 78 >A/NY/3008/2009                     22   2  17   0   8  10   9   4   6   1   9   0  23   0   0  20   0  14   6  12  11  11  17  12  18  19  11  12  12  13  15  18  12   6  17   6   5   1   9   2   4   4   6   2   1   4   5   0   4   0   1   0   1  13   4   4   1   3   1   5   3   0   3   0   1   0   1   1   0   0   2   2   0   3   0   4   0   0   0   0   2   0   3   0   2   2   2   5  14   0  26  16  18  12  16  17  10  16   0  13   1  15   0  12   4   2  10   1  10   7   1   7   3   6   2  15   1   0   3   7   4   6  12   6  17  21   9  21  10  12   2  18  10   5   3  12   5  18   8   8   8  53  25   5   3  19   3  13   7  18   0  23  20  11     8   4   4  15  19  15  19  13    12#    7    5957   5536     78:>A/NY/3008/2009                   
 79 >A/NY/35/2009                        4   0   4   0   3   0   3   0   2   0   3   0   4   0   0   3   0   4   4   3   3   3   4   3   6   6   5   5   5   5   5   5   5   0   5   0   5   0   7   0   2   0   4   0   1   2   3   0   1   0   1   0   1   0   4   0   1   0   1   0   3   0   1   0   0   0   0   0   0   0   1   0   0   1   0   1   0   0   0   0   0   0   0   0   0   0   1   0   4   0   5   4   4   5   4   4   4   4   0   3   1   3   0   5   0   2   1   1   1   2   1   1   1   1   2   0   1   0   3   0   4   0   4   0   5   5   4   6   2   2   2   3   2   2   2   2   2   2   3   2   3   7   4   3   3   3   3   2   3   4   0   4   4   2     0  21   0  15   0   0   0   0    15#    2    1311   6315     79:>A/NY/35/2009                     
 80 >A/NY/24/2009                        6   2   6   0   6   0   5   0   5   0   3   0   7   0   0   6   0   6   4   5   5   5   6   6   9   8   5   5   5   5   7   7   5   0   8   0   5   1   7   0   2   4   4   0   1   2   3   0   1   0   1   0   1   0   4   2   1   0   1   3   3   0   1   0   0   0   0   0   0   0   2   1   0   1   0   1   0   0   0   0   0   0   0   0   0   0   1   5   4   0   8   7   7   5   7   7   4   8   0   5   1   6   0   5   4   2   4   1   4   4   1   4   1   2   2   2   1   0   3   1   4   2   4   0   7   7   6   8   4   4   2   5   2   5   2   2   2   4   5   4   5  11   6   5   3   6   3   4   5   7   0   6   6   4     0  21   0  15   0   0  19   0    16#    3    1828   5218     80:>A/NY/24/2009                     
 81 >A/NY/18/2009                       23   2  19   1   8  10   9   4   6   1   9   0  25   0   0  22   0  15   6  13  12  12  18  13  20  21  11  12  12  14  16  20  14   6  18   6   5   1   9   2   4   4   6   2   1   6   7   0   5   0   2   1   1  14   4   4   1   3   1   5   3   0   5   2   3   0   3   3   0   1   4   4   1   5   0   6   0   2   0   0   0   0   4   0   3   4   2   5  14   0  28  17  20  13  18  19  10  17   0  15   1  17   0  13   4   2  12   1  12   9   1   8   4   7   2  17   1   1   3   7   4   6  13   6  19  23   9  23  12  13   2  19  11   5   3  13   5  20   8   9   8  55  27   5   3  20   3  15   7  20   0  25  22  13     8   8   4  15  19  15  19  24    13#    8    5961   5537     81:>A/NY/18/2009                     
 82 >A/Massachusetts/07/2009            15   0  12   0   5  10   7   4   3   1   9   0  11   0   0  12   0  11   6   9   8   8  11   8  12  13  11  12  12  11  11  12   9   6   9   6   5   0   9   2   4   0   6   2   1   2   4   0   4   0   1   0   1  10   4   2   1   3   1   2   3   0   1   0   0   0   0   0   0   0   1   0   0   1   0   1   0   0   0   0   0   0   0   0   1   0   2   0  14   0  14   9   9  11   9  10  10  10   0   7   1   5   0  11   0   2   4   1   4   2   1   3   2   3   2   8   1   0   3   6   4   4  10   6   9  13   7  12   7   9   2  10   9   2   3   6   5  11   6   5   6  23  11   3   3  12   3   7   5  10   0  12  11   7     0  21   0  15  19  15   0   0    16#    4    3018   5378     82:>A/Massachusetts/07/2009          
 83 >A/Virginia/04/2009                 15   0  17   0   5  10   7   4   3   1   9   0  19   0   0  18   0  14   6  12  11  11  14  11  17  19  11  12  12  15  15  18  15   6  13   6   5   0   9   2   4   0   6   2   1   5   7   0   6   0   3   2   1  15   4   2   1   3   1   2   3   0   6   2   4   0   2   4   0   2   4   3   1   4   0   5   0   3   0   0   4   0   0   0   3   5   2   0  14   0  23  12  16  11  13  15  10  14   0  13   1  12   0  14   0   2   9   1   9   5   1   3   5   6   2  14   1   2   3   6   4   4  14   6  16  20   7  19  10  12   2  14  12   2   3  15   5  17   6   8   6  40  22   3   3  14   3  13   5  17   0  20  17  12    12  21   0  15  19  15   0  35    17#    7    4038   5444     83:>A/Virginia/04/2009               
 84 >A/NY/30/2009                        4   0   4   0   3   0   3   0   2   0   3   0   4   0   0   3   0   4   4   3   3   3   4   3   6   6   5   5   5   5   5   5   5   0   5   0   5   0   7   0   2   0   4   0   1   2   3   0   1   0   1   0   1   0   4   0   1   0   1   0   3   0   1   0   0   0   0   0   0   0   1   0   0   1   0   1   0   0   0   0   0   0   0   0   0   0   1   0   4   0   5   4   4   5   4   4   4   4   0   3   1   3   0   5   0   2   1   1   1   2   1   1   1   1   2   0   1   0   3   0   4   0   4   0   5   5   4   6   2   2   2   3   2   2   2   2   2   2   3   2   3   7   4   3   3   3   3   2   3   4   0   4   4   2     0  21   0  15   0   0   0   0    15#    2    1311   6315     84:>A/NY/30/2009                     
 85 >A/NY/11/2009                       20   2  18   0   9  10  10   4   7   1  10   0  21   0   0  19   0  15   7  12  11  11  14  12  19  19  12  13  13  14  16  18  10   6  12   6   5   1  10   2   5   4   7   2   2   5   6   0   5   0   2   1   1  14   4   5   1   4   1   5   3   0   3   2   2   1   2   2   0   2   4   4   1   4   1   4   2   2   0   0   3   1   3   0   0   0   3   5  15   0  24  15  17  12  17  17  11  17   0  14   1  12   0  13   4   2  11   1  11   6   2   9   3   8   2  13   1   2   3   7   4   7  12   6  15  20  10  19  11  13   2  13  11   5   4   8   6  17   9   9   9  39  19   5   3  19   3  13   8  16   0  20  18  12     0  21   8  15  19  22  19  13    16#    7    4529   5436     85:>A/NY/11/2009                     
 86 >A/Nebraska/03/2009                 15   0  11   0   3  10   3   4   2   1   3   0  17   0   0  15   0  10   4   9   8   8  14   8  14  15   9  10  10  11  11  14  14   0  16   0   5   0   7   2   2   0   4   2   1   5   7   0   1   0   1   0   1  10   4   0   1   0   1   2   3   0   5   0   3   0   1   3   0   0   3   2   2   4   0   6   0   2   0   0   4   0   5   0   0   0   1   0  11   0  17  12  14   9  10  11   7  10   0   9   1  12   0   9   0   2   6   1   7   5   1   2   3   3   2  12   1   0   3   0   4   0  12   0  15  16   4  16   6   7   2  15   7   2   2  14   2  14   3   3   3  39  20   3   3  13   3  10   3  14   0  18  15   9    16   4   0  15  19   0   0  13    13#    5    3945   5550     86:>A/Nebraska/03/2009               
 87 >A/New Jersey/01/2009               17   0  14   0   7  10   9   4   5   1  11   0  13   0   0  14   0  13   8  11  10  10  13  10  14  15  13  14  14  13  13  14  10   6  10   6   6   0  11   2   6   0   8   2   3   4   6   1   6   1   3   1   2  11   5   3   2   4   2   2   3   1   3   2   2   2   2   2   1   2   3   2   2   3   2   3   2   2   1   1   2   2   2   1   3   1   0   0  16   0  16  11  11  13  11  12  12  12   0   9   2   7   0  13   0   3   6   2   6   4   3   5   3   5   3   9   2   1   4   6   5   5  11   6  10  15   9  14   9  11   3  12  11   3   5   7   7  13   8   7   8  25  13   4   4  14   4   9   7  12   0  14  13   9     0  21   0  21  19  22   0   0    21#    6    3018   5378     87:>A/New Jersey/01/2009             
 88 >A/Minas Gerais/65/2009              3   3   3   0   3   0   3   0   4   0   0   0   4   0   0   3   0   3   0   3   3   3   3   3   3   3   0   0   0   0   3   3   0   0   3   0   0   2   0   0   0   0   0   0   5   5   5   0   0   0   0   5   0   0   0   3   0   0   0   3   0   0   5   5   5   0   5   5   0   0   6   6   5   5   5   6   0   5   0   5   5   0   0   0   5   0   0   0   0   0   4   4   4   0   4   4   0   5   0   3   0   3   0   0   0   0   4   0   3   3   0   4   0   4   0   3   0   5   0   1   0   3   0   0   3   3   3   3   3   3   0   3   0   4   0   0   0   3   3   3   3   4   3   3   0   3   0   3   0   3   0   3   3   3     0  21   0   0   0   0  56   0    53#    1     354   5190     88:>A/Minas Gerais/65/2009           
 89 >A/Colorado/03/2009                 15   0  12   0   5  10   6   4   8   1   8   0  11   0   0  12   0   9   4   8   7   7  11   7  12  13  11  12  12  11  11  12  10   6  10   6   3   0   8   2   7   0   5   2   8  15  18   1  18   1  15  10   5   2   4   5   5   2   5   7   3   1  15  14  14  14  14  14   4  14  15  14  14  15  14  15  14  14   4   4  14  14  14   4  15  11  16   0   0   0  14   9   9  11   9  10  10  10   0  13   0  15   0  11   0   4  12   3  14   7   6  13   9  13   4   8   5  10   2   6   3   3  11   6  10  13   6  12   7   9   2  10   9   2   6   7   4  11   4   4   4  19   7   1   1   6   1   7   3  10   0  12  11   7     0  21   0  22  39  18   0   0    25#    7    3018   5385     89:>A/Colorado/03/2009               
 90 >A/Israel/MF-70/2009                 0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   1   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0     0  21   0   0   0   0   0   0     0#    0     102   5527     90:>A/Israel/MF-70/2009              
 91 >A/Texas/09/2009                    24   1  18   1   9  10  11   4  14   1  12   0  27   1   1  26   0  14   9  11  10  10  18  11  20  21   9  10  10  12  13  20  11   6  16   6   6   3  10   2  11   3   9   2  15  29  31   1  21   1  18  15   6  13   3   9   6   5   6   5   4   1  29  23  27  14  24  27   5  19  28  28  21  29  17  30  16  26   5   8  28  14  23   5  24  17  16   4  14   0   0   7   8   6   7   4   4   8   0  23   0  29   0  13   3   5  22   4  24  17  10  17   8  20   5  16   6  17   4   7   4   7  11   6  19  25  10  25  11  12   3  19  11   5  10  12   8  22  10  11  10  57  29   5   4  22   4  17   9  22   1  27  24  15    14   7  12  26  14  40  18  29    21#   12    5959   5528     91:>A/Texas/09/2009                  
 92 >A/Texas/08/2009                    18   1   9   1   4  10   6   4   9   1   7   0  16   0   0  17   0   7   4   5   4   4  12   5  11  12   4   5   5   4   5  11   7   6  14   6   5   3   5   2   6   3   4   2  10  19  21   1  13   1  10   8   5   5   2   5   5   1   5   5   3   1  19  14  17   9  15  17   4  10  18  18  15  19  12  19  10  16   4   7  17   9  12   4  15  12  11   4   9   0   7   0   0   2   0   1   1   2   0  13   0  20   0   6   3   4  13   3  15  10   5  11   5  12   4   8   5   9   3   7   3   3   7   6  14  16   5  16   4   5   2  13   4   4   5   7   3  13   5   4   5  45  19   4   3  15   3   8   4  13   0  17  15   6    10   7   8  20  14  12  18   0    13#    7    5596   5528     92:>A/Texas/08/2009                  
 93 >A/Texas/04/2009                    18   1  12   1   4  10   6   4   9   1   7   0  19   0   0  18   0   8   4   6   5   5  12   6  12  13   4   5   5   6   7  12   8   6  14   6   5   3   5   2   6   3   4   2  10  21  23   1  15   1  12  10   5   8   2   5   5   1   5   5   3   1  21  16  19   9  17  19   4  12  20  20  15  21  12  22  10  18   4   7  20   9  16   4  17  14  11   4   9   0   8   0   0   2   0   2   1   2   0  15   0  21   0   7   3   4  14   3  16  11   5  11   6  13   4  10   5  11   3   7   3   3   9   6  15  17   5  17   5   6   2  13   5   4   5   9   3  14   5   5   5  50  21   4   3  15   3   9   4  14   0  19  16   7    10   7   8  20  14  12  18  18    14#    8    5965   5528     93:>A/Texas/04/2009                  
 94 >A/North Carolina/05/2009           17   0  10   1   3  10   7   4   9   1   9   0  11   0   0  13   0   8   6   5   4   4  11   4   8   9   6   7   7   6   6   8   6   6  10   6   6   0   7   2   8   0   6   2   9  14  17   1  15   1  12   6   6   6   3   5   6   2   6   3   3   1  13  12  12  11  13  12   5  11  13  12  12  14  11  15  11  12   5   5  13  11  11   5  12   9  13   0  11   0   6   2   2   0   2   3   3   3   0  11   0  15   0   8   0   5  10   4  12  11   7  11   6  10   5   7   6   6   4   6   3   3   8   6   8  11   5  11   5   6   3  11   6   3   7   4   5  10   6   5   6  28  11   4   4  11   4   5   5   9   0  12  11   5     0   7   0  26  14  19   0   0    18#    6    3800   5546     94:>A/North Carolina/05/2009         
 95 >A/Texas/05/2009                    18   1  12   1   4  10   6   4   9   1   7   0  17   0   0  16   0   8   4   6   5   5  10   6  11  11   4   5   5   6   7  10   6   6  11   6   5   3   5   2   6   3   4   2  10  19  21   1  15   1  12  10   5   8   2   5   5   1   5   5   3   1  17  16  16   9  17  16   4  12  18  18  13  19  12  20  10  16   4   7  18   9  13   4  17  10  11   4   9   0   7   0   0   2   0   2   1   2   0  14   0  18   0   7   3   4  13   3  15  11   5  11   6  13   4   9   5  11   3   7   3   3   9   6  12  14   5  14   5   6   2  10   5   4   5   5   3  12   5   5   5  41  15   4   3  14   3   7   4  11   0  16  14   6     0   7   8  20  14  12  18  18    14#    7    5310   5528     95:>A/Texas/05/2009                  
 96 >A/Texas/22/2009                    17   1  14   1   5  10   7   4  10   1   8   0  16   0   0  16   0  10   5   7   6   6  11   7  11  11   5   6   6   8   9  10   7   6  11   6   5   3   6   2   7   3   5   2  11  19  22   1  17   1  14  12   5  10   2   6   5   2   5   5   3   1  18  17  17  10  18  17   4  13  19  18  14  19  13  21  10  17   4   7  19  10  15   4  17  11  12   4  10   0   4   1   2   3   2   0   0   4   0  14   0  18   0   9   3   4  13   3  15  13   6  10   7  13   4  11   5  12   3   7   3   4  10   6  10  13   6  13   7   8   2  11   7   4   6   6   4  12   6   7   6  36  14   4   3  12   3   7   5  12   0  15  13   7     0   7   0  20  14  18  18  29    17#    8    4686   5510     96:>A/Texas/22/2009                  
 97 >A/Kansas/02/2009                   11   0   8   0   3  10   6   4   8   1   8   0   7   0   0  10   0   7   5   4   3   3   7   3   6   7   5   6   6   5   5   6   4   6   6   6   5   0   6   2   7   0   5   2   8  11  14   1  14   1  11   6   5   6   2   5   5   2   5   3   3   1  11  10  10  10  10  10   4  10  11  10  10  11  10  11  10  10   4   4  10  10  10   4  11   7  12   0  10   0   4   1   1   3   1   0   0   2   0   9   0  11   0   7   0   4   8   3  10   7   6   9   5   9   4   4   5   6   3   6   3   3   7   6   6   9   5   8   3   5   2   6   5   2   6   3   4   7   5   4   5  19   7   3   3   8   3   3   4   6   0   8   7   3     0  21   0  20  14  18   0   0    18#    5    3018   5357     97:>A/Kansas/02/2009                 
 98 >A/Texas/06/2009                    13   2  13   0   5  10   7   4  10   1   7   0  13   0   0  14   0  10   4   8   7   7   9   8  10  10   5   6   6   7   9   9   6   6  10   6   5   3   5   2   6   4   4   2  11  17  20   1  16   1  13  12   5   9   2   6   5   1   5   7   3   1  17  16  16  10  16  16   4  12  18  17  14  17  14  18  10  16   4   8  17  10  14   4  17  10  12   5  10   0   8   2   2   3   2   4   2   0   0  13   0  15   0   8   4   4  12   3  14   9   5  10   7  13   4   8   5  12   3   7   3   4  10   6  10  12   6  11   6   8   2   8   6   5   5   6   3  10   6   6   6  27  11   5   3  11   3   6   5  10   0  12  10   6     0  21   0  20  20  12  27  18    19#    7    3901   5323     98:>A/Texas/06/2009                  
 99 >A/Israel/G-645/2009                 0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   1   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0     0  21   0   0   0   0   0   0     0#    0     102   5527     99:>A/Israel/G-645/2009              
100 >A/Korea/01/2009                    20   0  14   0   6  10   6   4   7   1   9   0  20   0   0  19   0  11   5   9   8   8  13   9  15  16  10  11  11  12  12  15   9   6  12   6   4   2   9   2   7   2   6   2   8  16  18   1  13   1  10   8   4  13   3   5   4   4   4   2   3   1  16  12  14   7  13  14   3  10  15  15  10  16   9  17   8  13   3   5  15   7  13   3  14   9   9   3  13   0  23  13  15  11  14  14   9  13   0   0   0  16   0  11   2   3  10   2  11   9   5   9   3  10   3  12   4   9   1   7   3   5  10   6  13  18   7  18   7   9   1  14   9   2   5   9   5  15   5   6   5  50  22   2   2  16   2  10   4  15   0  20  17   8     6   4   8  17  16  27   9  20    14#    8    5959   5533    100:>A/Korea/01/2009                  
101 >A/Colombia/450/2009                 0   0   1   0   1   0   1   0   0   0   0   0   1   0   0   0   0   1   1   1   1   1   0   0   1   2   2   2   2   2   2   2   2   0   0   0   2   0   1   0   1   0   1   0   1   1   1   1   1   1   1   0   1   0   0   0   2   0   2   0   0   1   1   1   1   1   1   1   1   1   1   1   1   2   1   2   1   1   1   1   1   1   1   1   1   1   2   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   2   0   1   0   0   0   0   0   0   0   0   0   0   2   0   0   0   1   0   0   0   1   1   1   1   0   0   0   0   0   0   0   0   0   0   0   0   0   1   0   0   0   0   0   0   1   1   0   1   1   0     0  21   0  22   0   0   0   0    21#    0     265   6315    101:>A/Colombia/450/2009              
102 >A/Nonthaburi/102/2009              25   1  18   2   8  11  10   4   7   1  11   1  26   1   1  23   0  13   8   9   8   8  20   9  21  22  12  13  13  13  14  21  14   7  19   7   6   3  11   2   6   2   8   2   8  18  20   1  10   1   7   6   4  12   5   4   4   4   4   3   4   1  18  12  16   5  13  16   3   7  17  17  13  18   8  19   6  15   3   6  17   5  12   3  12  12   7   3  15   0  29  20  21  15  18  18  11  15   0  16   0   0   0  12   2   3  13   2  13   9   3  10   2   8   3  16   4   7   4   8   4   6  11   7  19  24   9  24  11  11   3  21  10   5   5  12   7  21   9   8   9  56  28   5   4  23   4  16   8  21   1  26  23  14    14  12   8  24  16  22  19   8    17#   10    5963   5532    102:>A/Nonthaburi/102/2009            
103 >A/Israel/G-640/2009                 0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   1   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0     0  21   0   0   0   0   0   0     0#    0     102   5527    103:>A/Israel/G-640/2009              
104 >A/Tennessee/05/2009                12   0  11   0   6  10   7   4   9   1   9   0  10   1   1  11   0   8   6   7   6   6   8   6   9  10   8   9   9   9   9   9   7   6   7   6   6   0   9   2   8   0   6   2   9  13  16   3  16   3  13   7   6   8   5   5   6   2   6   3   4   3  13  12  12  11  12  12   5  12  13  12  11  13  11  14  11  12   5   5  13  11  14   5  13   9  13   0  11   0  13   6   7   8   7   9   7   8   0  11   2  12   0   0   0   5   9   4  11   8   7  10   6  10   5   5   6   7   4   6   6   3   9   6   7  10   8   9   4   6   3   7   6   3   7   5   5   8   6   5   6  24   9   4   4   9   4   4   5   7   1  10   8   4     0  21   0  30  14  19   0   8    21#    7    3387   5357    104:>A/Tennessee/05/2009              
105 >A/Rio de Janeiro/118/2009           2   2   2   0   2   0   2   0   3   0   0   0   3   0   0   2   0   2   0   2   2   2   2   2   2   2   0   0   0   0   2   2   0   0   2   0   0   2   0   0   0   0   0   0   4   4   4   0   0   0   0   4   0   0   0   2   0   0   0   2   0   0   4   4   4   0   4   4   0   0   5   5   4   4   4   5   0   4   0   4   4   0   0   0   4   0   0   0   0   0   3   3   3   0   3   3   0   4   0   2   0   2   0   0   0   0   3   0   2   2   0   3   0   3   0   2   0   4   0   1   0   2   0   0   2   2   2   2   2   2   0   2   0   3   0   0   0   2   2   2   2   3   2   2   0   2   0   2   0   2   0   2   2   2     0  21   0   0   0   0  41   0    39#    1     351   5189    105:>A/Rio de Janeiro/118/2009        
106 >A/Mexico/4635/2009                  4   0   4   0   3   0   3   0   2   0   3   0   4   0   0   3   0   4   4   3   3   3   4   3   6   6   5   5   5   5   5   5   5   0   5   0   5   0   7   0   2   0   4   0   3   3   5   2   3   2   3   0   3   0   4   0   3   0   3   0   3   2   3   2   2   2   2   2   2   2   3   2   2   3   2   3   2   2   2   2   2   2   2   2   2   2   3   0   4   0   5   4   4   5   4   4   4   4   0   3   1   3   0   5   0   0   1   1   1   2   1   1   1   1   2   0   3   0   3   0   4   0   4   0   5   5   4   6   2   2   2   3   2   2   2   2   2   2   3   2   3   7   4   3   3   3   3   2   3   4   0   4   4   2     0  21   0  19   0   0   0   0    18#    2    1311   6315    106:>A/Mexico/4635/2009               
107 >A/Mexico/4603/2009                 20   1  13   0   6  10   7   4   6   1   8   0  19   0   0  16   0  10   5   8   7   7  13   8  14  15   9  10  10  10  11  14   8   6  13   6   4   2   8   2   4   3   5   2   7  13  15   1   9   1   6   7   2  11   3   5   2   3   2   3   3   1  13   9  11   4  10  11   1   6  12  12   8  13   7  14   5  10   1   4  12   4   9   1  11   6   6   4  12   0  22  13  14  10  13  13   8  12   0  10   0  13   0   9   3   1   0   0   8   6   2   7   0   7   1  11   2   8   2   7   3   5   9   6  13  17   7  17   6   8   1  14   7   3   4   8   4  14   6   5   6  50  21   3   2  16   2   9   4  14   0  19  16   7     6   4   8  13  16  20  19   8    12#    7    5965   5533    107:>A/Mexico/4603/2009               
108 >A/Mexico/4595/2009                  3   0   3   0   2   0   2   0   1   0   2   0   3   0   0   2   0   3   3   2   2   2   3   2   5   5   4   4   4   4   4   4   4   0   4   0   4   0   6   0   1   0   3   0   2   2   4   1   2   1   2   0   2   0   3   0   2   0   2   0   3   1   2   1   1   1   1   1   1   1   2   1   1   2   1   2   1   1   1   1   1   1   1   1   1   1   2   0   3   0   4   3   3   4   3   3   3   3   0   2   0   2   0   4   0   1   0   0   0   1   0   0   0   0   1   0   2   0   2   0   3   0   3   0   4   4   3   5   1   1   1   2   1   1   1   1   1   1   2   1   2   6   3   2   2   2   2   1   2   3   0   3   3   1     0  21   0  13   0   0   0   0    12#    1    1311   6315    108:>A/Mexico/4595/2009               
109 >A/Mexico/4604/2009                 22   1  15   0   7  11   8   4   5   1   9   0  21   0   0  18   0  12   6   9   8   8  15   9  16  17  11  12  12  12  13  16   9   7  14   7   4   3   9   2   4   2   6   2   6  13  15   1   9   1   6   7   2  13   3   4   2   4   2   4   3   1  13   9  11   4  10  11   1   6  12  12   8  13   7  14   5  10   1   4  12   4   9   1  11   7   6   3  14   0  24  15  16  12  15  15  10  14   0  11   0  13   0  11   2   1   8   0   0   5   1   7   1   7   1  13   2   8   2   8   3   6  10   7  14  19   8  19   8  10   1  16   9   3   3   9   5  16   7   6   6  52  23   3   2  18   2  11   6  16   0  21  18   9     6   4   8  13  23  22  19   8    13#    8    5965   5529    109:>A/Mexico/4604/2009               
110 >A/Texas/23/2009                    14   0  12   2   5   0   7   0   4   0   9   0  14   0   0  10   0   6   6   3   3   3  11   4  11  11   7   7   7   8   8  10   7   6  10   6   5   2   9   0   4   2   6   0   5   9  11   1   7   1   4   3   3   5   4   2   3   3   3   1   3   1   8   7   7   2   8   7   2   3   9   8   6   9   4  11   2   7   2   4   9   2   5   2   6   5   4   3   7   0  17  10  11  11  11  13   7   9   0   9   0   9   0   8   2   2   6   1   5   0   1   5   1   3   2   8   3   3   3   7   3   4   5   6   7  10   6  12   6   5   2  11   5   3   3   3   5   8   6   5   6  29  12   3   3  10   3   6   5  11   0  12  11   6     0  12   0  18   0  15   9   8    14#    5    3853   5674    110:>A/Texas/23/2009                  
111 >A/Mexico/4575/2009                  7   0   7   0   4   0   6   0   2   0   8   0   6   0   0   5   0   5   5   3   3   3   6   3   7   8   6   6   6   6   6   7   4   6   4   6   4   0   8   0   3   0   5   0   2   2   4   1   5   1   2   0   2   3   3   2   2   3   2   0   3   1   2   1   1   1   1   1   1   1   2   1   1   2   1   2   1   1   1   1   1   1   1   1   2   1   3   0   6   0  10   5   5   7   5   6   6   5   0   5   0   3   0   7   0   1   2   0   1   1   0   1   0   1   1   3   2   0   2   6   3   4   3   6   4   7   6   8   3   4   1   5   4   1   2   1   4   4   5   4   5  13   6   2   2   5   2   3   4   6   0   6   6   3     0  21   0  13   0  15   0   0    13#    3    2185   6315    111:>A/Mexico/4575/2009               
112 >A/Mexico/4482/2009                 21   1  12   0   7  10   8   4   5   1   9   0  17   0   0  16   0  11   6   8   7   7  13   8  15  15  10  11  11  10  11  14   7   6  11   6   4   3   9   2   4   3   6   2   6  10  12   1   7   1   4   5   2  10   3   4   2   4   2   3   3   1   8   7   7   3   8   7   1   4   9   9   6  10   6  10   4   7   1   4   8   3   3   1   9   2   5   4  13   0  17  11  11  11  11  10   9  10   0   9   0  10   0  10   3   1   7   0   7   5   1   0   0   6   1  11   2   6   2   7   3   6   8   6  11  16   8  16   7   9   1  13   8   3   3   4   5  14   7   6   7  39  16   3   2  17   2   9   6  13   0  17  16   8     0   4   8  13  16  22  18   0    13#    6    4945   5534    112:>A/Mexico/4482/2009               
113 >A/Wisconsin/08/2009                 9   0   8   0   2  10   2   4   1   1   2   0   8   0   0   7   0   7   3   6   5   5   6   5   8   8   7   8   8   8   8   7   7   0   7   0   4   0   6   2   1   0   3   2   2   4   7   1   4   1   4   2   2   8   3   0   2   0   2   1   3   1   4   3   3   2   3   3   1   3   4   3   2   4   2   5   2   3   1   1   4   2   5   1   3   3   3   0   9   0   8   5   6   6   6   7   5   7   0   3   0   2   0   6   0   1   0   0   1   1   0   0   0   0   1   5   2   2   2   0   3   0   9   0   7   8   3   7   3   4   1   5   4   1   1   5   1   6   2   1   2  18   7   2   2   7   2   3   2   5   0   8   6   3     0  21   0  13  16   0   0   8    13#    3    2513   5371    113:>A/Wisconsin/08/2009              
114 >A/Michigan/02/2009                 17   1  14   0   7  10   8   4   5   1   9   0  17   0   0  15   0  11   6   8   7   7  11   8  15  15  10  11  11  11  12  14   7   6   9   6   4   1   9   2   4   3   6   2   4   8  10   1   8   1   5   4   2  12   3   4   2   4   2   3   3   1   7   6   6   3   6   6   1   5   8   8   4   8   4   8   4   6   1   2   7   3   6   1   8   3   5   4  13   0  20  12  13  10  13  13   9  13   0  10   0   8   0  10   3   1   7   0   7   3   1   6   0   0   1  10   2   5   2   7   3   6   9   6  11  16   8  15   7   9   1  10   8   3   3   5   5  13   7   6   7  35  15   3   2  16   2   9   6  12   0  16  14   8     0  21   8  13  16  22  14   8    14#    6    4527   5431    114:>A/Michigan/02/2009               
115 >A/Mexico/4502/2009                  4   0   4   0   2   0   3   0   2   0   3   0   4   0   0   3   0   4   4   2   2   2   4   2   6   6   5   5   5   5   5   5   5   0   3   0   5   0   7   0   2   0   4   0   3   3   5   1   3   1   3   0   3   0   4   0   3   0   3   0   3   1   3   2   2   2   2   2   2   2   3   2   2   3   2   3   2   2   2   2   2   2   2   2   2   2   3   0   4   0   5   4   4   5   4   4   4   4   0   3   0   3   0   5   0   2   1   1   1   2   1   1   1   1   0   0   3   0   3   0   3   0   4   0   5   5   3   6   2   2   2   3   2   2   2   2   2   2   3   2   3   7   4   3   3   3   3   2   3   4   0   4   4   2     0  21   0  18   0   0   0   0    18#    2    1311   6315    115:>A/Mexico/4502/2009               
116 >A/Minnesota/02/2009                11   0  11   2   2  10   3   4   5   1   5   0  12   0   0  11   0   6   1   6   3   3   8   4   6   7   2   3   3   4   4   7   5   7   6   7   0   2   1   2   3   2   1   2   5  16  17   0  13   0  10  12   0   9   0   5   0   2   0   6   0   0  17  14  16   8  15  16   0  10  16  16  13  16  10  19   8  15   0   2  17   8  14   0  13  12   9   3   8   0  16   8  10   7   9  11   4   8   0  12   0  16   0   5   2   0  11   0  13   8   3  11   5  10   0   0   0  12   0   8   0   3   5   7   8  11   2  10   6   6   0  10   4   1   4   6   2  10   2   3   2  35  14   0   0   9   0   7   1  11   0  12   9   6     6  12   0   0  22  19   9  20    15#    6    4043   5517    116:>A/Minnesota/02/2009              
117 >A/NY/04/2009                        5   0   5   0   4   0   4   0   3   0   4   0   5   0   0   4   0   5   5   4   4   4   5   4   7   7   6   6   6   6   6   6   6   0   6   0   6   0   6   0   3   0   5   0   2   3   4   1   2   1   2   0   2   0   5   0   2   0   2   0   3   1   2   1   1   1   1   1   1   1   2   1   1   2   1   2   1   1   1   1   1   1   1   1   1   1   2   0   5   0   6   5   5   6   5   5   5   5   0   4   2   4   0   6   0   3   2   2   2   3   2   2   2   2   3   0   0   0   4   0   5   0   5   0   6   6   5   7   3   3   3   4   3   3   3   3   3   3   4   3   4   8   5   4   4   4   4   3   4   3   0   5   5   3     0  21   0  21   0   0   0   0    21#    2    1311   6315    117:>A/NY/04/2009                     
118 >A/NY/15/2009                       14   2  13   0   5  10   6   4   4   1   6   0  15   0   0  14   0  10   2   9   8   8   9   9  11  11   6   7   7   8  10  11   5   6   7   6   0   1   2   2   2   4   2   2   0   1   1   0   3   0   0   0   0  13   0   4   0   3   0   5   0   0   0   0   0   0   0   0   0   0   1   2   0   1   0   2   0   0   0   0   1   0   2   0   2   0   1   5  10   0  17   9  11   6  11  12   6  12   0   9   0   7   0   7   4   0   8   0   8   3   0   6   2   5   0  12   0   0   0   7   0   6   8   6   9  13   5  11   8  10   0   9   8   3   1   6   3  13   5   6   5  30  13   2   0  14   0   9   4  10   0  14  12   8     0  21   4   0  19  15  19  13    14#    4    3241   5435    118:>A/NY/15/2009                     
119 >A/Catalonia/P154/2009               3   0   1   0   3   0   2   0   3   0   1   0   3   1   1   4   0   3   3   3   3   3   2   3   5   5   4   4   4   4   4   4   4   0   4   0   3   0   6   0   3   0   3   0   4   4   6   1   4   1   4   0   4   0   3   0   4   0   4   0   4   1   4   3   3   3   3   3   3   3   4   3   3   4   3   4   3   3   3   3   3   3   3   3   3   3   4   0   2   0   4   3   3   4   3   3   3   3   0   1   0   4   0   4   0   3   2   2   2   3   2   2   2   2   3   0   4   0   0   0   4   0   2   0   4   4   4   5   1   1   1   2   1   1   1   1   1   1   2   1   2   4   2   1   1   1   1   1   2   3   1   3   3   1     0  21   0  18   0   0   0   0    18#    2    1240   6315    119:>A/Catalonia/P154/2009            
120 >A/Paris/2591/2009                   7   1   7   0   7   0   8   0   7   0   7   1   8   0   0   7   0   7   6   4   4   4   7   5   7   7   6   6   6   6   7   7   0   1   1   1   0   1   6   0   6   1   6   0   7   7   7   0   6   0   6   7   0   6   0   7   0   6   0   1   0   0   7   7   7   6   7   7   0   6   7   7   7   7   7   8   6   7   0   1   7   6   6   0   7   0   6   1   6   0   7   7   7   6   7   7   6   7   0   7   0   8   0   6   1   0   7   0   8   7   6   7   0   7   0   8   0   7   0   0   0   7   0   1   1   7   7   7   7   7   0   7   6   1   6   0   6   7   7   7   7   7   7   1   0   8   0   7   4   7   0   8   8   7     0  21   0   0   0 212  44   0   133#    4     325   5057    120:>A/Paris/2591/2009                
121 >A/Italy/06/2009                     5   0   5   0   5   0   4   0   4   0   3   0   4   1   1   4   0   1   1   1   1   1   3   5   4   5   5   5   5   5   5   5   5   0   4   0   5   0   5   0   4   0   4   0   4   4   6   3   5   3   5   0   4   0   3   0   5   0   5   0   4   3   5   4   4   4   4   4   4   4   4   4   4   5   4   5   4   4   4   4   4   4   4   4   4   4   5   0   3   0   4   3   3   3   3   3   3   3   0   3   1   4   0   6   0   4   3   3   3   3   3   3   3   3   3   0   5   0   4   0   0   0   4   0   5   5   5   6   3   3   3   4   3   3   3   3   3   3   3   3   4   5   4   3   3   3   3   3   4   4   1   4   4   3     0  21   0  41   0   0   0   0    40#    3     741   6315    121:>A/Italy/06/2009                  
122 >A/Catalonia/P48/2009                4   0   4   0   3   0   3   0   5   0   6   0   4   0   0   4   0   2   2   1   1   1   3   2   3   2   2   2   2   2   2   3   0   6   1   6   0   2   2   0   3   2   2   0   6   6   6   0   6   0   4   6   0   3   0   6   0   3   0   1   0   0   6   6   6   4   6   6   0   4   7   7   6   6   6   7   4   6   0   2   6   4   4   0   7   0   5   3   3   0   7   3   3   3   3   4   3   4   0   5   0   6   0   3   2   0   5   0   6   4   4   6   0   6   0   3   0   6   0   7   0   0   0   6   0   3   3   3   2   3   0   3   3   1   5   0   1   1   1   1   1   9   3   0   0   3   0   2   2   4   0   3   3   2     0  21   0   0   0  27  10   0    20#    2    1313   5182    122:>A/Catalonia/P48/2009             
123 >A/Kansas/03/2009                    9   0  11   0   4  11   3   5   4   2   3   0   9   1   1  10   0  10   3   9   6   6   4   6   9   9   7   8   8   9   9   8   8   0   7   0   5   0   7   3   4   0   4   2   5  13  16   2  13   2  13   8   5   8   4   0   5   0   5   6   4   2  13  12  12  10  12  12   4  12  13  12  10  13  10  14  10  12   4   4  13  10  14   4  12  12  11   0  11   0  11   7   9   8   9  10   7  10   0  10   0  11   0   9   0   4   9   3  10   5   3   8   9   9   4   5   5   8   2   0   4   0   0   0  10  11   5  10   6   7   2   5   5   2   2   6   2   3   2   3   2  18   8   3   3   7   3   6   2   8   1   9   7   6     0  21   0  23  29   0   0  20    24#    6    2507   5364    123:>A/Kansas/03/2009                 
124 >A/Paris/2604/2009                   6   0   6   0   6   0   7   0   6   0   7   0   7   0   0   6   0   6   6   3   3   3   6   4   6   6   6   6   6   6   6   6   0   0   0   0   0   0   6   0   6   0   6   0   6   6   6   0   6   0   6   6   0   6   0   6   0   6   0   0   0   0   6   6   6   6   6   6   0   6   6   6   6   6   6   7   6   6   0   0   6   6   6   0   6   0   6   0   6   0   6   6   6   6   6   6   6   6   0   6   0   7   0   6   0   0   6   0   7   6   6   6   0   6   0   7   0   6   0   1   0   6   0   0   0   6   6   6   6   6   0   6   6   0   6   0   6   6   6   6   6   6   6   0   0   7   0   6   3   6   0   7   7   6     0  21   0   0   0 212   2   0   116#    3     327   5076    124:>A/Paris/2604/2009                
125 >A/CA/08/2009                       17   0   9   0   6  10   3   4   6   1   4   0  19   1   1  18   0   8   5   8   7   7  12   8  15  15   8   9   9   9   9  14  11   0  15   0   6   2   8   2   5   2   5   2   8  20  22   3  11   3  11   7   6   7   5   0   6   0   6   5   4   3  20  14  18   9  15  18   5  12  19  19  14  20  11  21  11  17   5   7  19   9  16   5  15  15  10   3  10   0  19  14  15   8  12  10   6  10   0  13   1  19   0   7   2   5  13   4  14   7   4  11   7  11   5   8   6   9   4   1   5   0  10   0   0   3   1   3   4   5   3  13   5   4   3  11   3  14   4   3   4  45  21   4   4  16   4  10   4  14   1  19  16   8    14   4  12  29  20   0   9   8    16#    8    5090   5528    125:>A/CA/08/2009                     
126 >A/CA/07/2009                       21   0  11   0   7  10   6   4  10   1   9   0  22   1   1  21   0  10   6  10   9   9  15  10  17  18  10  11  11  11  11  17  12   6  16   6   6   2   9   2   8   2   6   2  11  24  26   3  18   3  15  11   6  10   5   5   6   0   6   6   4   3  24  18  22  13  19  22   5  16  23  23  18  24  15  25  15  21   5   7  23  13  20   5  20  16  15   3  13   0  25  16  17  11  14  13   9  12   0  18   1  24   0  10   2   5  17   4  19  10   7  16   8  16   5  11   6  13   4   7   5   3  11   6   3   0   1   4   6   8   3  16   8   4   7  12   5  17   6   5   6  53  24   4   4  19   4  12   5  17   1  22  19  10    14   4  12  29  27  18   9   8    17#   10    5965   5526    126:>A/CA/07/2009                     
127 >A/CA/09/2009                        8   0   6   0   7   0   6   0   9   0   8   0   7   1   1   6   0   6   6   6   6   6   6   7   6   7   6   6   6   6   6   7   5   6   5   6   6   2   6   0   7   2   5   0   9   9  11   3  11   3   8   5   4   2   3   5   5   0   5   1   4   3  10   9   9   7   9   9   4   7  10  10   9  10   9  10   7   9   4   6   9   7   7   4  10   4   9   3   6   0  10   5   5   5   5   6   5   6   0   7   1   9   0   8   2   4   7   3   8   6   6   8   3   8   3   2   5   5   4   7   5   3   5   6   1   1   0   0   4   5   3   6   5   4   7   3   5   5   5   5   6  15   7   4   4   7   4   4   5   7   1   6   6   4     0  21   0  39   0  18   9   0    24#    5    2191   5201    127:>A/CA/09/2009                     
128 >A/CA/04/2009                       21   0  11   1   8  10   7   4  11   1  10   0  22   1   1  21   0   9   7   9   8   8  15   9  17  18   9  10  10  10  10  17  12   6  16   6   7   2  10   2   9   2   7   2  12  24  26   4  17   4  14   9   7   8   6   5   7   0   7   4   4   4  24  18  22  12  19  22   6  15  23  23  18  24  14  25  14  21   6   8  23  12  19   6  19  16  14   3  12   0  25  16  17  11  14  13   8  11   0  18   1  24   0   9   2   6  17   5  19  12   8  16   7  15   6  10   7  11   5   7   6   3  10   6   3   4   0   0   6   7   4  16   7   5   8  11   6  17   7   6   7  53  24   5   5  19   5  12   6  17   1  22  19  10    14   8  12  35  14  18   9   8    17#   10    5965   5527    128:>A/CA/04/2009                     
129 >A/Mexico/4115/2009                 12   0   7   0   3  10   3   4   6   1   5   0   9   0   0   9   0   4   2   4   3   3   6   4   6   6   4   5   5   5   5   5   4   6   7   6   3   2   5   2   4   2   2   2   7  12  15   1  12   1   9   8   3   7   2   4   3   1   3   4   3   1  11  10  10   7  11  10   2   8  12  11   9  12   9  14   7  10   2   4  12   7  10   2  11   6   9   3   7   0  11   4   5   5   5   7   3   6   0   7   0  11   0   4   2   2   6   1   8   6   3   7   3   7   2   6   3   8   1   7   3   2   6   6   4   6   4   6   0   2   0   6   2   1   3   2   1   5   2   1   2  29   7   1   1   7   1   0   1   5   0   8   6   0     0   4   0  12  14  12   9   8    10#    5    4686   5510    129:>A/Mexico/4115/2009               
130 >A/Arizona/01/2009                  10   0   9   0   4  11   4   5   7   2   6   0   9   0   0  10   0   6   3   5   4   4   6   5   8   8   6   7   7   7   7   7   5   6   6   6   3   2   6   3   5   2   3   2   8  13  16   1  14   1  11  10   3   9   2   5   3   2   3   5   3   1  13  12  12   9  12  12   2  10  14  13  11  13  11  14   9  12   2   4  13   9  12   2  13   7  11   3   9   0  12   5   6   6   6   8   5   8   0   9   0  11   0   6   2   2   8   1  10   5   4   9   4   9   2   6   3  10   1   7   3   3   7   6   5   8   5   7   2   0   0   5   4   1   4   3   2   6   3   2   3  23   7   1   1   8   1   2   2   6   0   8   6   2     0  21   0  12  21  19   9   8    15#    5    3899   5332    130:>A/Arizona/01/2009                
131 >A/Narita/1/2009                     2   0   2   0   2   0   1   0   2   0   1   0   2   0   0   3   0   2   2   2   2   2   2   2   4   4   3   3   3   3   3   3   3   0   3   0   3   0   5   0   2   0   2   0   3   3   5   1   3   1   3   0   3   0   2   0   3   0   3   0   3   1   3   2   2   2   2   2   2   2   3   2   2   3   2   3   2   2   2   2   2   2   2   2   2   2   3   0   2   0   3   2   2   3   2   2   2   2   0   1   0   3   0   3   0   2   1   1   1   2   1   1   1   1   2   0   3   0   1   0   3   0   2   0   3   3   3   4   0   0   0   1   0   0   0   0   0   0   1   0   1   5   2   1   1   1   1   0   1   2   0   2   2   0     0  21   0  12   0   0   0   0    12#    1    1311   6315    131:>A/Narita/1/2009                  
132 >A/Arizona/02/2009                  16   0  11   3   5  10   5   4   8   1   7   0  14   1   1  16   0   7   4   7   4   4  11   5  12  13   5   6   6   5   5  12  10   6  14   6   4   2   7   2   6   2   4   2   9  20  23   1  14   1  11   9   4   5   3   5   4   2   4   5   4   1  21  15  19  10  16  19   3  10  20  19  18  20  12  21  10  18   3   5  19  10  14   3  13  15  12   3  10   0  19  13  13  11  10  11   6   8   0  14   0  21   0   7   2   3  14   2  16  11   5  13   5  10   3  10   4   9   2   7   4   3   5   6  13  16   6  16   6   5   1   0   3   2   5   6   3  12   4   3   4  39  17   2   2  13   2   9   3  15   1  15  13   8    14  16   0  18  16  19   9   0    16#    8    4968   5515    132:>A/Arizona/02/2009                
133 >A/New Mexico/04/2009                8   0   9   0   3  10   4   4   6   1   4   0   6   0   0   7   0   6   3   6   3   3   4   3   5   6   4   5   5   5   5   5   3   6   3   6   3   0   6   2   5   0   3   2   6  11  14   1  14   1  11   8   3   7   2   5   3   2   3   4   3   1  11  10  10   9  10  10   2  10  11  10   9  11   9  12   9  10   2   2  11   9  12   2  11   7  11   0   9   0  11   4   5   6   5   7   5   6   0   9   0  10   0   6   0   2   7   1   9   5   4   8   4   8   2   4   3   8   1   6   3   3   5   6   5   8   5   7   2   4   0   3   0   0   4   1   2   4   3   2   3  20   5   1   1   5   1   2   2   5   0   6   4   2     0  21   0  12  16  19   0   8    14#    4    3387   5364    133:>A/New Mexico/04/2009             
134 >A/Mexico/4646/2009                  3   1   3   0   4   0   2   0   4   0   1   0   4   0   0   5   0   3   2   3   3   3   3   4   6   5   3   3   3   3   4   4   3   0   5   0   3   3   5   0   2   3   2   0   6   6   8   1   3   1   3   3   3   0   2   1   3   0   3   2   3   1   6   5   5   2   5   5   2   2   7   6   5   6   5   6   2   5   2   5   5   2   2   2   5   2   3   4   2   0   5   4   4   3   4   4   2   5   0   2   0   5   0   3   3   2   3   1   3   3   1   3   1   3   2   1   3   3   1   1   3   1   2   0   4   4   4   5   1   1   0   2   0   0   0   0   0   1   2   1   2   8   3   2   1   3   1   1   2   4   0   3   3   1     0  21   0  12   0   0  19   0    14#    2    1828   5183    134:>A/Mexico/4646/2009               
135 >A/Mexico/4593/2009                  7   0   7   0   5   0   6   0   4   0   8   0   6   0   0   7   0   5   5   4   4   4   6   4   7   8   6   6   6   6   6   7   3   6   3   6   3   0   8   0   5   0   5   0   4   4   6   1   7   1   4   1   3   4   2   3   3   4   3   0   3   1   4   3   3   3   3   3   2   3   4   3   3   4   3   4   3   3   2   2   3   3   3   2   4   2   5   0   6   0  10   5   5   7   5   6   6   5   0   5   0   5   0   7   0   2   4   1   3   3   2   3   1   3   2   4   3   1   1   6   3   5   2   6   3   7   7   8   3   4   0   5   4   0   0   0   4   4   5   4   5  13   6   1   1   5   1   3   4   6   0   6   6   3     0  21   0  12   0  22   0   0    16#    3    2185   6315    135:>A/Mexico/4593/2009               
136 >A/Washington/09/2009                5   0   7   0   2  10   1   4   2   1   1   0   7   0   0   8   0   6   2   6   3   3   6   3   8   9   3   4   4   5   5   8   8   0   8   0   3   0   5   2   2   0   2   2   3  13  16   1   9   1   9   6   3   6   2   0   3   0   3   4   3   1  15   8  13   6   8  13   2   8  13  12  10  13   6  14   6  12   2   2  13   6  15   2   8  14   7   0   7   0  12   7   9   4   5   6   3   6   0   9   0  12   0   5   0   2   8   1   9   3   1   4   5   5   2   6   3   6   1   0   3   0   6   0  11  12   3  11   2   3   0   6   1   0   0   0   0   5   1   1   1  26  12   1   1   6   1   6   1   9   0   8   5   5    18  21   0  12  16   0   0  20    15#    4    3163   5428    136:>A/Washington/09/2009             
137 >A/Mexico/4176/2009                  5   0   5   0   3   0   4   0   6   0   6   0   4   0   0   5   0   3   3   3   3   3   4   3   5   6   4   4   4   4   4   5   3   6   3   6   3   0   6   0   5   0   3   0   6   6   8   1   9   1   6   3   3   2   2   5   3   2   3   0   3   1   6   5   5   5   5   5   2   5   6   5   5   6   5   6   5   5   2   2   5   5   5   2   6   2   7   0   4   0   8   3   3   5   3   4   4   3   0   5   0   7   0   5   0   2   4   1   5   5   4   5   1   5   2   2   3   3   1   6   3   1   2   6   3   5   5   6   1   2   0   3   2   0   4   0   0   0   1   0   1  11   4   1   1   3   1   1   2   4   0   4   4   1     0  21   0  12   0  18   0   0    14#    3    2185   6315    137:>A/Mexico/4176/2009               
138 >A/NY/1669/2009                     15   0  12   1   4  11   4   5   7   2   6   0  13   0   0  12   0   8   3   8   5   5  11   6  10  11   6   7   7   7   7  10   8   6  12   6   3   2   6   3   5   2   3   2   8  21  23   1  16   1  13  12   3   9   2   5   3   2   3   7   3   1  21  16  19  11  17  19   2  13  20  20  16  21  13  22  12  18   2   4  20  11  17   2  17  14  13   3  11   0  22  13  14  10  12  12   7  10   0  15   0  21   0   8   2   2  14   1  16   8   4  14   6  13   2  10   3  13   1   7   3   1   3   6  14  17   5  17   5   6   0  12   4   1   4   5   0   0   1   0   1  45  17   1   1  12   1   9   2  14   0  13  10   7     9   8   6  12  29  18   9   8    13#    8    5961   5527    138:>A/NY/1669/2009                   
139 >A/Catalonia/P186/2009               6   0   6   0   4   0   4   0   7   0   6   0   6   0   0   7   0   4   4   3   3   3   4   4   7   6   5   5   5   5   5   6   4   6   5   6   3   2   7   0   5   2   4   0   9   9  11   1   9   1   7   5   4   2   3   5   4   2   4   1   3   1   9   8   8   6   8   8   3   6   9   9   8   9   8   9   6   8   3   5   8   6   6   3   9   3   8   3   4   0  10   5   5   6   5   6   5   6   0   5   0   9   0   6   2   3   6   2   7   6   5   7   2   7   3   2   4   5   2   7   3   1   2   6   4   6   5   7   2   3   1   4   3   2   5   1   1   1   0   1   2  12   4   1   1   3   1   2   3   5   0   5   5   2     0  21   0  18   0  20  10   0    17#    4    2444   5294    139:>A/Catalonia/P186/2009            
140 >A/Denmark/513/2009                  5   0   7   0   4   0   4   0   7   0   6   0   7   0   0   6   0   3   3   3   3   3   4   4   6   6   4   4   4   5   5   5   3   6   4   6   3   2   6   0   5   2   3   0   8   9  11   1  10   1   7   6   3   4   2   5   3   2   3   1   3   1   9   8   8   5   8   8   2   6  10   9   7   9   7  10   5   8   2   4   9   5   8   2   9   3   7   3   4   0  11   4   5   5   5   7   4   6   0   6   0   8   0   5   2   2   5   1   6   5   4   6   1   6   2   3   3   6   1   7   3   1   3   6   3   5   5   6   1   2   0   3   2   1   4   1   0   0   1   0   1  16   5   1   1   4   1   1   2   5   0   5   4   1     0  21   0  12   0  18   9   8    13#    4    3051   5201    140:>A/Denmark/513/2009               
141 >A/Catalonia/P53/2009                6   0   6   0   4   0   4   0   7   0   6   0   6   1   1   7   0   4   4   4   4   4   4   4   7   6   5   5   5   5   5   6   4   6   5   6   3   2   7   0   5   2   4   0   9   9  11   1   9   1   7   5   4   2   3   5   4   2   4   1   3   1   9   8   8   6   8   8   3   6  10   9   8   9   8   9   6   8   3   5   8   6   6   3   9   3   8   3   4   0  10   5   5   6   5   6   5   6   0   5   0   9   0   6   2   3   6   2   6   6   5   7   2   7   3   2   4   5   2   7   4   1   2   6   4   6   6   7   2   3   1   4   3   2   5   1   1   1   2   1   0  12   4   1   1   3   1   2   3   5   1   5   5   2     0  21   0  19   0  20  10   0    17#    4    2430   5251    141:>A/Catalonia/P53/2009             
142 >A/Sw/Alberta/OTH-33-8/2009         40   2  36   7  15  11  15   5  18   2  15   0  50   0   0  50   0  25  10  18  15  15  38  16  46  46  18  19  19  23  25  45  33   6  35   6   6   2  15   3  14   3  12   3  19  56  58   3  31   3  28  24   8  15   7  11   8   6   8  12   3   3  56  44  54  23  45  54   7  33  55  56  43  56  27  57  29  53   7  11  55  23  40   7  39  39  25   4  19   0  57  45  50  28  41  36  19  27   0  50   1  56   0  24   3   7  50   6  52  29  13  39  18  35   7  35   8  30   4   7   5   9  18   6  45  53  15  53  29  23   5  39  20   8  13  26  11  45  12  16  12   0  45   6   4  38   4  45  10  49   0  50  48  43    39  33  28  39  48  46  28  46    39#   23    5965   5527    142:>A/Sw/Alberta/OTH-33-8/2009       
143 >A/CA/06/2009                       17   0  14   2   6  10   6   4   9   1   8   0  22   1   1  21   0   9   4   7   4   4  16   5  17  18   6   7   7   8   8  17  14   6  17   6   3   2   8   2   7   2   5   2  10  28  30   1  17   1  14  11   5   4   4   5   5   2   5   5   4   1  28  19  26  11  20  26   4  15  27  27  21  28  13  29  13  25   4   6  27  11  22   4  19  20  13   3   7   0  29  19  21  11  15  14   7  11   0  22   0  28   0   9   2   4  21   3  23  12   6  16   7  15   4  14   5  13   2   7   4   3   8   6  21  24   7  24   7   7   2  17   5   3   6  12   4  17   4   5   4  45   0   1   1  12   1  16   3  19   1  22  19  14    27  12  10  22  16  18   9  19    17#   10    5965   5529    143:>A/CA/06/2009                     
144 >A/CA/10/2009                        3   0   3   0   4   0   2   0   4   0   2   0   4   0   0   5   0   3   2   2   2   2   3   3   6   5   4   4   4   4   4   4   4   0   5   0   2   2   6   0   3   2   3   0   6   6   8   1   4   1   4   2   4   0   3   0   4   0   4   1   3   1   6   5   5   3   5   5   3   3   7   6   5   6   5   6   3   5   3   5   5   3   3   3   5   3   4   3   1   0   5   4   4   4   4   4   3   5   0   2   0   5   0   4   2   3   3   2   3   3   2   3   2   3   3   0   4   2   1   1   3   0   3   0   4   4   4   5   1   1   1   2   1   2   1   1   1   1   1   1   1   6   1   0   0   0   0   1   1   4   0   3   3   1     0  21   0  16   0   0   9   0    14#    2    1823   5186    144:>A/CA/10/2009                     
145 >A/CA/13/2009                        3   0   3   0   3   0   2   0   3   0   2   0   3   0   0   4   0   3   2   2   2   2   3   2   5   5   4   4   4   4   4   4   4   0   4   0   2   0   6   0   3   0   3   0   4   4   6   1   4   1   4   0   4   0   3   0   4   0   4   0   3   1   4   3   3   3   3   3   3   3   4   3   3   4   3   4   3   3   3   3   3   3   3   3   3   3   4   0   1   0   4   3   3   4   3   3   3   3   0   2   0   4   0   4   0   3   2   2   2   3   2   2   2   2   3   0   4   0   1   0   3   0   3   0   4   4   4   5   1   1   1   2   1   1   1   1   1   1   1   1   1   4   1   0   0   0   0   1   1   3   0   3   3   1     0  21   0  16   0   0   0   0    16#    2    1311   6315    145:>A/CA/13/2009                     
146 >A/CA/05/2009                       18   1  12   1   5  11   6   5   8   2   7   0  15   0   0  16   0  10   3   8   5   5  12   6  12  13   7   8   8   7   8  12   8   7  13   7   2   2   7   3   6   2   4   2  10  22  24   1  16   1  13  12   4   3   3   6   4   2   4   8   3   1  22  18  20  12  19  20   3  14  21  21  17  22  15  22  14  19   3   6  20  12  14   3  19  13  14   3   6   0  22  15  15  11  14  12   8  11   0  16   0  23   0   9   2   3  16   2  18  10   5  17   7  16   3   9   4  14   1   8   3   3   7   7  16  19   7  19   7   8   1  13   5   3   5   6   3  12   3   4   3  38  12   0   0   0   0  11   2  16   0  16  14   9     6   8  10  16  29  18  18   0    16#    9    5596   5528    146:>A/CA/05/2009                     
147 >A/CA/11/2009                        3   0   3   0   3   0   2   0   3   0   2   0   3   0   0   4   0   3   2   2   2   2   3   2   5   5   4   4   4   4   4   4   4   0   4   0   2   0   6   0   3   0   3   0   4   4   6   1   4   1   4   0   4   0   3   0   4   0   4   0   3   1   4   3   3   3   3   3   3   3   4   3   3   4   3   4   3   3   3   3   3   3   3   3   3   3   4   0   1   0   4   3   3   4   3   3   3   3   0   2   0   4   0   4   0   3   2   2   2   3   2   2   2   2   3   0   4   0   1   0   3   0   3   0   4   4   4   5   1   1   1   2   1   1   1   1   1   1   1   1   1   4   1   0   0   0   0   1   1   3   0   3   3   1     0  21   0  16   0   0   0   0    16#    2    1311   6315    147:>A/CA/11/2009                     
148 >A/Mexico/InDRE4487/2009            14   0   7   0   3  10   3   4   6   1   5   0  14   0   0  13   0   4   2   4   3   3   8   4   9  10   4   5   5   5   5   9   6   6  10   6   3   2   5   2   4   2   2   2   7  16  18   1  12   1   9   8   3   7   2   4   3   1   3   4   3   1  16  11  14   7  12  14   2   9  15  15  11  16   9  17   8  13   2   4  15   7  13   2  13  10   9   3   7   0  17   8   9   5   7   7   3   6   0  10   0  16   0   4   2   2   9   1  11   6   3   9   3   9   2   7   3   9   1   7   3   2   6   6  10  12   4  12   0   2   0   9   2   1   3   6   1   9   2   1   2  45  16   1   1  11   1   0   1   9   0  14  11   2    10   4   8  12  14  12   9   8    10#    6    5965   5528    148:>A/Mexico/InDRE4487/2009          
149 >A/Regensburg/Germany/01/2009        5   0   5   0   3   0   3   0   6   0   5   0   5   0   0   5   0   3   3   3   3   3   3   4   4   5   4   4   4   4   4   5   4   3   4   3   3   2   5   0   4   0   3   0   8   8  10   2   8   2   6   4   4   1   3   4   4   1   4   0   3   2   8   7   7   5   7   7   3   5   9   8   7   8   7   8   5   7   3   5   7   5   5   3   8   3   7   0   3   0   9   4   4   5   4   5   4   5   0   4   1   8   0   5   0   3   4   2   6   5   4   6   2   6   3   1   4   4   2   4   4   2   2   3   4   5   5   6   1   2   1   3   2   2   4   1   2   2   3   2   3  10   3   1   1   2   1   1   0   2   0   4   4   1     0  21   0  20   0  13  12   0    16#    3    2146   5275    149:>A/Regensburg/Germany/01/2009     
150 >A/Mexico/InDRE4114/2009            18   1  12   1   6  10   7   4  10   1   8   0  19   0   0  18   0   8   4   6   5   5  14   6  14  15   7   8   8   8   9  14  10   6  15   6   5   2   6   2   7   2   5   2  11  21  23   2  15   2  12  10   5   8   4   6   5   1   5   5   3   2  21  15  19  10  16  19   4  11  20  20  17  21  13  22  10  18   4   7  20  10  17   4  16  14  12   3  10   0  22  13  14   9  11  12   6  10   0  15   1  21   0   7   2   4  14   3  16  11   6  13   5  12   4  11   3  10   3   7   4   4   8   6  14  17   7  17   5   6   2  15   5   4   6   9   4  14   5   5   5  49  19   4   3  16   3   9   2   0   0  19  16   7    14   8   4  23  14  18  18   8    15#    9    5961   5529    150:>A/Mexico/InDRE4114/2009          
151 >A/Toronto/3178/2009                 2   0   1   0   1   0   0   0   0   0   0   0   0   0   0   0   0   1   1   1   1   1   0   2   0   0   0   0   0   0   0   0   0   0   1   0   0   0   1   0   0   0   0   0   0   0   2   0   1   0   1   0   0   0   0   0   0   0   0   0   3   0   1   0   0   0   0   0   0   0   0   0   0   0   0   1   0   0   0   0   0   0   0   0   0   0   0   0   0   0   1   0   0   0   0   0   0   0   0   0   0   1   0   1   0   0   0   0   0   0   0   0   0   0   0   0   0   0   1   0   1   0   1   0   1   1   1   1   0   0   0   1   0   0   0   0   0   0   0   0   1   0   1   0   0   0   0   0   0   0   0   0   0   0     0  21   0   5   0   0   0   0     5#    0     410   6315    151:>A/Toronto/3178/2009              
152 >A/Canada-NS/RV1536/2009            18   0  15   2   5  10   4   4   9   1   8   0  10   0   0  17   0  10   5   8   5   5  14   6  15  16   7   8   8   9   9  15  12   7  15   7   5   2   8   2   7   2   5   2  10  26  28   2  18   2  15  12   5   9   4   5   5   2   5   6   3   2  26  20  24  12  21  24   4  16  25  25  19  26  14  27  14  23   4   6  25  12  20   4  20  18  14   3  12   0  27  17  19  12  16  15   8  12   0  20   1  26   0  10   2   4  19   3  21  12   6  17   8  16   4  12   5  14   3   8   4   3   9   7  19  22   6  22   8   8   2  15   6   3   6   8   4  13   5   5   5  50  22   3   3  16   3  14   4  19   0   0   3  12    13  12  10  23  22  18   9  20    17#   10    5961   5526    152:>A/Canada-NS/RV1536/2009          
153 >A/Canada-NS/RV1535/2009            17   0  13   2   5  10   4   4   9   1   8   0   7   0   0  14   0   8   5   6   3   3  12   4  12  13   6   7   7   7   7  12   9   7  13   7   5   2   8   2   7   2   5   2  10  23  25   2  16   2  13  10   5   7   4   5   5   2   5   5   3   2  23  18  21  11  19  21   4  14  22  22  17  23  13  24  13  20   4   6  22  11  17   4  18  15  13   3  11   0  24  15  16  11  14  13   7  10   0  17   1  23   0   8   2   4  16   3  18  11   6  16   6  14   4   9   5  12   3   8   4   3   7   7  16  19   6  19   6   6   2  13   4   3   6   5   4  10   5   4   5  48  19   3   3  14   3  11   4  16   0   3   0   9     9  12  10  23  16  18   9   8    15#    9    5965   5529    153:>A/Canada-NS/RV1535/2009          
154 >A/swine-flu/index/2009-02-01       13   0   7   0   3  10   3   4   6   1   5   0  12   0   0  11   0   4   2   4   3   3   7   4   7   8   4   5   5   5   5   7   5   6   9   6   3   2   5   2   4   2   2   2   7  14  16   1  12   1   9   8   3   7   2   4   3   1   3   4   3   1  14  10  12   7  11  12   2   8  13  13  10  14   9  15   7  11   2   4  13   7  12   2  12   9   9   3   7   0  15   6   7   5   6   7   3   6   0   8   0  14   0   4   2   2   7   1   9   6   3   8   3   8   2   6   3   8   1   7   3   2   6   6   8  10   4  10   0   2   0   8   2   1   3   5   1   7   2   1   2  43  14   1   1   9   1   2   1   7   0  12   9   0     6   4   4  12  14  12   9   8     9#    5    5965   5528    154:>A/swine-flu/index/2009-02-01     
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
                                         1   2   3   4   5   6   7   8   9  10  11  12  13  14  15  16  17  18  19  20  21  22  23  24  25  26  27  28  29  30  31  32  33  34  35  36  37  38  39  40  41  42  43  44  45  46  47  48  49  50  51  52  53  54  55  56  57  58  59  60  61  62  63  64  65  66  67  68  69  70  71  72  73  74  75  76  77  78  79  80  81  82  83  84  85  86  87  88  89  90  91  92  93  94  95  96  97  98  99 100 101 102 103 104 105 106 107 108 109 110 111 112 113 114 115 116 117 118 119 120 121 122 123 124 125 126 127 128 129 130 131 132 133 134 135 136 137 138 139 140 141 142 143 144 145 146 147 148 149 150 151 152 153 154     3  16   2  16  15  16   9   6

gsgs · Aug 18, 2010

Re: swine flu sequences (thread from h5n1experts)

viruses from 160 people/swine per 18.May 2008

deleted

to be updated

gsgs · Aug 18, 2010

Re: swine flu sequences (thread from h5n1experts)

--------------posted: 2009/05/19----------------

Code:

differences from the calculated novelflu index-strain in 1/100 percent
    #nucleotide-differences
           #nucleotides available
                    number in file novelflua3.13l
                            virus name 


   0    0 13139  261 M**flu/index/2009-02-01
   0    0  8714  120 Mexico/4115/2009/04/07
   1    2 13139  121 Mexico/InDRE4487/2009/04/14
   2    1  4911  170 Denmark/513/2009/04/29
   3    2  5464   26 New Mexico/04/2009/04/26
   3    3  8714  137 Arizona/01/2009/04/22
   4    2  4888  134 Lisboa/26/2009/04/
   4    6 13139  138 Beijing/01/2009/05/16
   5    6 10753   40 Maryland/05/2009/04/29
   5    7 13123   42 Mexico/4108/2009/04/02
   5    7 13129   63 Texas/04/2009/04/14
   5    7 13139   96 Mexico/4603/2009/04/19
   5    7 13139  103 England/195/2009/04/28
   5    7 13139  119 Mexico/InDRE4114/2009//
   5    7 13139  139 Narita/1/2009/05/08
   5    7 13139  169 NY/1669/2009/04/26
   5    7 13139  187 NY/1682/2009/04/27
   6    3  4900  109 Castilla-La Mancha/GP13/2009/04/26
   6    3  4901  107 Valencia/GP4/2009/04/26
   6    5  7612   54 Tennessee/05/2009/04/28
   6    6  9287   87 Minnesota/02/2009/04/27
   6    7 10991   88 Minnesota/03/2009/04/
   6    8 11732  160 CA/08/2009/04/09
   6    8 11732  176 Iowa/04/2009/04/24
   6    8 12298  131 CA/05/2009/03/30
   6    8 13016   30 Israel/644/2009/04/
   6    8 13127   41 NY/3099/2009/04/29
   6    8 13132   62 Texas/05/2009/04/15
   6    8 13133   46 Korea/01/2009/05/02
   6    8 13139   64 Texas/08/2009/04/24
   6    9 13119   50 NY/3240/2009//
   6    9 13139   90 Mexico/4604/2009/04/19
   6    9 13139   98 Canada-NS/RV1535/2009/04/24
   7    4  5400  249 NY/09/2009/04/25
   7    8 10011   95 Mexico/4482/2009/04/14
   7    8 10012   61 Kansas/02/2009/04/24
   7    8 10150   24 Arizona/02/2009/04/26
   7    8 11319   65 North Carolina/05/2009/04/28
   7    9 11441  147 NY/15/2009/04/25
   7   10 13116    1 Mexico/4486/2009/04/14
   7   10 13129    5 Hamburg/4/2009//
   7   10 13129  159 CA/04/2009/04/01
   7   10 13139  155 Texas/15/2009/04/15
   8    4  4623  186 Delaware/03/2009/04/28
   8    4  4900   22 Pais Vasco/GP20/2009/04/26
   8    4  4901  105 Castilla-La Mancha/GP9/2009/04/26
   8    7  8482  144 Washington/09/2009/04/28
   8    7  8714   60 Texas/22/2009/04/26
   8    7  8720   66 Texas/06/2009/04/23
   8    8  9889  189 New Jersey/02/2009/04/
   8    9 10868  185 New Jersey/04/2009/04/
   8    9 10985  104 South Carolina/09/2009/04/26
   8   10 11319   20 Colorado/03/2009/04/27
   8   10 12298  108 Florida/04/2009/04/27
   8   11 13090  244 NY/3235/2009/04/28
   8   11 13107   78 NY/3255/2009//
   8   11 13112  246 NY/3257/2009//
   8   11 13116  243 NY/20/2009/04/25
   8   11 13130  225 NY/3008/2009/04/27
   8   11 13130  227 NY/3260/2009/04/27
   8   11 13130  230 NY/3220/2009//
   8   11 13133    6 Kansas/03/2009/04/24
   8   11 13133   34 NY/3221/2009//
   8   11 13133   58 Texas/09/2009/04/25
   8   11 13139  157 CA/07/2009/04/09
   9    9  9584  162 Texas/07/2009/04/25
   9   10 10862   80 NY/19/2009/04/25
   9   11 12160  220 NY/21/2009/04/24
   9   12 13049  224 NY/3191/2009/04/25
   9   12 13074  255 NY/3222/2009//
   9   12 13090  231 NY/3253/2009//
   9   12 13100   77 NY/3232/2009/04/30
   9   12 13130   36 NY/3014/2009/04/27
   9   12 13130  226 NY/3234/2009/04/28
   9   12 13130  242 NY/3219/2009//
   9   12 13130  252 NY/3237/2009/04/28
   9   12 13133   92 Michigan/02/2009/04/26
   9   12 13133  247 CA/14/2009/04/25
   9   12 13139    3 Canada-NS/RV1538/2009//
   9   12 13139   35 NY/10/2009/04/25
   9   12 13139   99 Canada-NS/RV1536/2009//
   9   12 13139  245 NY/23/2009/04/24
   9   12 13139  248 NY/06/2009/04/25
   9   13 13034  259 NY/3238/2009/04/28
   9   13 13080  257 NY/3239/2009//
   9   13 13124  229 NY/3218/2009//
   9   13 13139  218 NY/18/2009/04/25
   9   13 13139  233 Canada-ON/RV1527/2009/04/24
   9   13 13139  234 Canada-ON/RV1529/2009//
  10    5  4623  192 Delaware/02/2009/04/28
  10    7  6771  191 New Hampshire/02/2009/04/28
  10   10  9497   72 Texas/23/2009/04/27
  10   11 10753   84 Nebraska/03/2009/04/27
  10   11 10991  223 NY/22/2009/04/24
  10   14 13101  256 NY/3252/2009//
  10   14 13118  260 NY/3202/2009//
  10   14 13130  113 NY/3007/2009/04/27
  10   14 13130  222 NY/3012/2009/04/27
  10   14 13133  101 Sichuan/1/2009/05/10
  10   14 13139   48 CA/06/2009/04/16
  10   14 13139   68 Indiana/09/2009/04/22
  10   14 13139   81 Canada-AB/RV1532/2009//
  10   14 13139  116 Canada-ON/RV1526/2009//
  11   11  9451  213 Nonthaburi/102/2009//
  11   12 10862   37 NY/13/2009/04/25
  11   12 10868   33 NY/31/2009/04/24
  11   15 13124  254 NY/3049/2009/04/27
  11   15 13139   28 Nonthaburi/102/2009/05/
  12   16 13058  236 Bayern/63/2009//
  12   16 13102  228 NY/3263/2009//
  12   16 13116  117 Ohio/07/2009/04/24
  12   16 13122  238 NY/3265/2009/04/29
  12   16 13133   44 Shandong/1/2009/05/10
  12   16 13139   32 NY/11/2009/04/25
  12   17 13133   79 NY/3262/2009/04/27
  13    7  5290  193 Alabama/02/2009/04/27
  13    8  6031  124 Nebraska/02/2009/04/
  13    9  6771   52 New Jersey/01/2009/04/
  13   12  8706  111 NY/12/2009/04/25
  14   11  7750  212 THA/104/2009/05/06
  14   13  8714  240 Massachusetts/06/2009/04/26
  14   16 10991  115 Georgia/01/2009/04/27
  15    7  4623  253 Massachusetts/07/2009/04/25
  15   12  7741  216 Virginia/04/2009/04/27
  15   20 13115  250 NY/3223/2009//
  31   42 13139   56 Sw/Alberta/OTH-33-8/2009//

gsgs · Aug 18, 2010

Re: swine flu sequences (thread from h5n1experts)

--------------posted: 2009/05/24-------------------
24.May, only viruses with more than 4000 nucleotides available,
coding region=13139 nucleotides, only polymorphisms that
occur more than once

Code:

                                      00001111112222 0000111112 000000111 0000000000000111111111 000000011111 0000000111 0000000000 0000000 
                                      05790233580122 3448017792 556789279 0012356678888000112245 122366801123 2233477012 1456678889 0234777 
                                      74956105773628 0572560690 687203348 2349875813779168796806 369946721442 4815148453 8920761273 9665378 
                                      26910881720340 0005811052 180060016 2758168767371280383283 278799978383 0364526450 9220967493 4276858 
-codon-position-----------------------  1 1  12 2 1    2 2  2     1 2  1  1111  1 2  1 1   1 11    111  12     11 11         1112   111  12 
---Index------------------------------TGGGAAGAATAGAG ATCCAGATCG AATCGCAAG CGCTAGTGAATAGGGGGAAGCG CTGCGCGGCGGA GAGGTAGATA GGGGGCTCCG TCAGCAC 
110 >A/Wisconsin/09/2009/04/27        -------------- ---------- --------- A..............A...... ....ATA.T... ---------- .......... ------- 
111 >A/Nebraska/02/2009/04//          -------------- ...A...... --------- ---------------------- ....ATA.T... .G........ ---------- ....A.. 
112 >A/Colorado/03/2009/04/27         .............. ...A...... .G.....C. A..............A...... ....ATAA.... .G........ ---------- ------- 
113 >A/CA/05/2009/03/30               .............. ...A...... .G.....C. A..................... .....T..T... .G........ .......... ------- 
114 >A/CA/06/2009/04/16               .............. ......G... .G.....C. A..................... ........T... .G........ .......... ....A.. 
  1 >A/Sw/Alberta/OTH-33-8/2009///    .............. .......... .G.....C. A..................... ........T... .G........ .......... ....A.. 
  2 >A/Castilla-LM/GP13/2009/04/26    -------------- ---------- --------- --A.......G...-------- ........T... -----....- .......... ....... 
  3 >A/Valencia/GP4/2009/04/26        -------------- ---------- --------- --A.......G...-------- ........T... -----....- .......... ....... 
  4 >A/Florida/04/2009/04/27          .............. .........A .......C. .A.................... ........T... .......... .......... ------- 
  5 >A/Pais Vasco/GP20/2009/04/26     -------------- ---------- --------- --............-------- ........T... -----....- .......... ....... 
  6 >A/Canada-NS/RV1535/2009/04/24    ........G..... ..T....C.. ....A..C. .........G.......G.... ........T... .........G .......... ....... 
  7 >A/Canada-NS/RV1538/2009///       ........G..... .......C.. .......C. .........G.......G.... ........T... .........G .......... ....... 
  8 >A/Canada-NS/RV1536/2009///       ........G..... ..T....C.. ....A..C. .........G.......G.... ........T... .........G .......... ....... 
  9 >A/Christchurch/2/2009/04/29      -------------- ---------- --------- ............R......... ------------ .........G .......... ------- 
 10 >A/Oregon/06/2009/04/28           -------------- ---------- --------- ...................... ............ ---------- .......... ------- 
 11 >A/Sichuan/1/2009/05/10           .A............ G...G..... ......... ..A................... ............ .......... .......... ....... 
 12 >A/North Carolina/06/2009/04/28   -------------- ---------- --------- ...................... ............ ---------- .......... ------- 
 13 >A/Mexico/InDRE4487/2009/04/14    .............. .......... ......... ...................... ............ .......... .......... ....... 
 14 >A/Sw-flu/index/2009-02-01        .............. .......... ......... ...................... ............ .......... .......... ....... 
 15 >A/Arizona/01/2009/04/22          .A............ ---------- --------- ...................... ............ .......... .......... ....... 
 16 >A/Narita/1/2009/05/08            .A............ ....G..... ...T..... ...................... ............ ...A...... .......... ....... 
 17 >A/Tennessee/05/2009/04/28        -------------- ---------- ...T..... ...................... ............ ...A...... ---------- ....... 
 18 >A/Mexico/InDRE4114/2009///       .............. ......G... ......... ........G............. ............ .......... .......... ....... 
 19 >A/Mexico/4115/2009/04/07         -------------- .......... --------- ...................... ............ .......... .......... ....... 
 20 >A/CA/04/2009/04/01               .....G...C.... .......... ..C.....T ...C........AA........ ............ .......G.. .......... ....... 
 21 >A/CA/07/2009/04/09               .....G...C.... .......... ..C.....T ...C........AA........ ............ .......G.. .......... ....... 
 22 >A/CA/08/2009/04/09               .....G...C.... .......... ..C.....T ...C........AA........ ............ ---------- .......... ....... 
 23 >A/Texas/15/2009/04/15            ...A.G........ .......... ........T ...................... ............ .......G.. .......... ....... 
 24 >A/Israel/644/2009/04//           .............. .......... ......... -..................... ............ .......... .......... ....... 
 25 >A/Nonthaburi/102/2009///         ....G..G...... ---------- .....T... ----------......------ ..A......A.. ..A.CG.... T......... ....... 
 26 >A/THA/104/2009/05/06             -------------- ---------- .....T... ....G.............G.T. ..A......A.. ..A.CG.... T......... ------- 
 27 >A/Nonthaburi/102/2009/05//       ....G..G...... .......... .....T... ....G.............G.T. ..A......A.. ..A.CG.... T......... ....... 
 28 >A/Mexico/4604/2009/04/19         .............. .......... ......... ....................T. ..A......A.. ..A..G.... .......... ....... 
 29 >A/NY/09/2009/04/25               -------------- .......... --------- ......A.............T. ------------ ..A..G.... ---------- ------- 
 30 >A/Massachusetts/06/2009/04/26    -------------- .......... --------- ......A.............T. ..A......AA. ..A..G.... .A.A...... ..G.... 
 31 >A/NY/08/2009/04/25               -------------- ---------- --------- ......A.............T. ------------ ..A..G.... .A.A...... ------- 
 32 >A/NY/18/2009/04/25               ...........A.. .......... ......... ......A.............T. ..A......AA. ..A..G.... .A.A...... ..G.... 
 33 >A/New Jersey/01/2009/04//        -------------- ---------- ......... ......A.............T. ..A......AA. ..A..G.... ---------- ------- 
 34 >A/NY/3049/2009/04/27             ...........A.. .......... ......... ......A.............T. ..A......AA. ..A..G.... .A.A...... ..G.... 
 35 >A/CA/14/2009/04/25               ...........A.A .......... ......... ......A.............T. ..A......AA. ..A..G.... .A.A...... ..G.... 
 36 >A/NY/06/2009/04/25               ...........A.A .......... ......... ......A.............T. ..A......AA. ..A..G.... .A.A...... ..G.... 
 37 >A/NY/3008/2009/04/27             ...........A.. .......... ......... ......A.............T. ..A......AA. ..A..G.... .A.A...... ..G.... 
 38 >A/NY/3014/2009/04/27             ...........A.. .......... ......... ......A.............T. ..A......AA. ..A..G.... .A.A...... ..G.... 
 39 >A/NY/13/2009/04/25               -------------- .......... ......... ......A.............T. ..A......AA. ..A..G.... .A.A....T. ..G.... 
 40 >A/Canada-AB/RV1532/2009///       ...........A.. .......... ......... ......A.............T. ..A......AA. ..A..G.... .A.A...... ..G.... 
 41 >A/NY/19/2009/04/25               -------------- .......... ......... ......A.............T. ..A......AA. ..A..G.... .A.A...... ..G.... 
 42 >A/Bayern/63/2009///              ...........A.- .....A.... ......... ......A............AT. ..A......AA. ..A..G.... .A.A...... ..G.... 
 43 >A/Brisbane/17/2009/05/07         -------------- ---------- --------- ......A............AT. ------------ ..A..G.... .A.A...... ------- 
 44 >A/NY/3007/2009/04/27             ...........A.. .....A.... ......... ......A............AT. ..A......AA. ..A..G.... .A.A...... ..G.... 
 45 >A/Georgia/01/2009/04/27          ...........A.. .....A.... --------- ......A.G..........AT. ..A......AA. ..A..G.... .A.A...... ..G.... 
 46 >A/Canada-ON/RV1526/2009///       ...........A.. .....A.... ......... ......W............AT. ..A......AA. ..A..G.... .A.A...... ..G.... 
 47 >A/Ohio/07/2009/04/24             ...........A.. .....A.... ......... ......A............AT. ..A......AA. ..A..G.... .A.A...... ..G.... 
 48 >A/NY/15/2009/04/25               ...........A.. .......... ......... ---------------------- ..A......AA. ..A..G.... .A.A...... ..G.... 
 49 >A/NY/3012/2009/04/27             ...........A.. .......... ......... ......A.............T. ..A......AA. ..A..G.... .A.A...... ..G.... 
 50 >A/NY/22/2009/04/24               ...........A.. .......... --------- ......A.............T. ..A......AA. ..A..G.... .A.A...... ..G.... 
 51 >A/Canada-ON/RV1527/2009/04/24    ...........A.. .......... ......... ......A.............T. ..A......AA. ..A..G.... .A.AA..... ..G.... 
 52 >A/Canada-ON/RV1529/2009///       ...........A.. .......... ......... ......A.............T. ..A......AA. ..A..G.... .A.AA..... ..G.... 
 53 >A/NY/10/2009/04/25               ...........A.. .......... ......... ......A.............T. ..A......AA. ..A..G.... .A.A...... ..G.... 
 54 >A/NY/11/2009/04/25               ...........A.. .......... ......... ......A.R...........T. ..A......AA. ..A..G.... .A.A...... ..G.... 
 55 >A/NY/31/2009/04/24               ...........A.. ---------- ......... ......A.R...........T. ..A......AA. ..A..G.... .A.A.T..Y. ..G.... 
 56 >A/NY/23/2009/04/24               ...........A.. .......... ......... ......A.............T. ..A......AA. ..A..G.... .A.A.T.TT. ..G.... 
 57 >A/NY/20/2009/04/25               ...........A.. .......... ......... ......A.............T. ..A......AA. ..A..G.... .A.A.T.TT. ..G.... 
 58 >A/NY/21/2009/04/24               ...........A.. .......... ......R.. ......A.............T. ..A......AA. ..A..G.... ---------- ..G.... 
 59 >A/NY/12/2009/04/25               -------------- .......... --------- ......A.............T. ..A......AA. ..A..G.... .A.A.T.... ..G.... 
 60 >A/Nebraska/03/2009/04/27         ...........A.. .......... ......G.. ......A.............T. ..A......AA. ---------- ---------- ..G.... 
 61 >A/NY/24/2009/04/24               -------------- ---------- --------- ......A.............T. ------------ ..A..G.... .A.A...... ------- 
 62 >A/Virginia/04/2009/04/27         ...........A.. ---------- --------- ......A.............T. ..A......AA. ..A..G.... ---------- ..G.... 
 63 >A/Massachusetts/07/2009/04/25    -------------- ---------- --------- ......A.............T. ..A......AA. ..A..G.... ---------- ------- 
 64 >A/Texas/23/2009/04/27            .............. .......... --------- ....................T. ------------ ..A..G.... .......... ....... 
 65 >A/Texas/19/2009/04/26            -------------- ---------- --------- ....................T. ..A......A.. ---------- .......... ------- 
 66 >A/Michigan/02/2009/04/26         ............C. ........T. ......... ....................T. ..A......A.. ..A..G.... .A........ ....... 
 67 >A/Wisconsin/08/2009/04/27        -------------- ---------- --------- ....................T. ..A......A.. ---------- ---------- ....... 
 68 >A/Mexico/4482/2009/04/14         -------------- .......... ......... ....................T. ..A......A.. ..A..G.... ......C... ------- 
 69 >A/Mexico/4603/2009/04/19         .............. .......... ......... ....................T. ..A......A.. ..R..R.... ......C... ....... 
 70 >A/Iowa/04/2009/04/24             .............. .......... ......... ....................T. ..A......A.. ---------- ........T. ....... 
 71 >A/Korea/01/2009/05/02            .............. .......... ......... ...................... ..A......A.. ..A....... .......... ....... 
 72 >A/Mexico/4108/2009/04/02         .............- .......... .......C. ................A..... ........T... .......... .........A ....... 
 73 >A/Texas/08/2009/04/24            ......A....... .C........ C........ ................A....A ............ .......... ..A....... .....G. 
 74 >A/Texas/04/2009/04/14            ......A....... .C........ C........ ................A....A ............ .......... ..A....... .....G. 
 75 >A/Texas/06/2009/04/23            ......A....... ---------- --------- ................A....A ............ .......... ..A....... .....G. 
 76 >A/North Carolina/05/2009/04/28   ......A....... .C........ C........ ................A....A ............ .......... ---------- ------- 
 77 >A/Kansas/02/2009/04/24           C.....A....... .C........ --------- ................A....A ............ A......... ---------- C....G. 
 78 >A/Texas/09/2009/04/25            C.....A....... .C........ C........ ................A....A ............ A......... ..A....... C....G. 
 79 >A/Texas/22/2009/04/26            -------------- .C........ --------- ................A....A ............ A......... ..A....... C....G. 
 80 >A/Texas/05/2009/04/15            ......A.....C. .C........ C........ ................A....A ............ .......... ..A....... .....G. 
 81 >A/Delaware/03/2009/04/28         -------------- ---------- --------- .......T...G....A..... ........T... .......... ---------- ------- 
 82 >A/Delaware/02/2009/04/28         -------------- ---------- --------- .......T...G....A..... ........T... .......... ---------- ------- 
 83 >A/New Hampshire/02/2009/04/28    -------------- ---------- .......C. .......T...G....A..... ........T... .......... ---------- ------- 
 84 >A/New Jersey/02/2009/04//        ..A........... ---------- .......C. .......T...G....A..... ........T... .......... ---------- ...T... 
 85 >A/Delaware/04/2009/04/28         -------------- ---------- --------- .......T...G....A..... ........T... ---------- .......... ------- 
 86 >A/New Jersey/04/2009/04//        ..A........... ---------- ......GC. .......T...G....A..... ........T... .......... .......... ...T... 
 87 >A/Wash.DC/02/2009/04/29          -------------- ---------- --------- .......T...G....A..... ........T... ---------- .......... ------- 
 88 >A/Maryland/05/2009/04/29         ..A........... .......... .......C. .......T...G....A..... ........T... ---------- ---------- ....... 
 89 >A/NY/3099/2009/04/29             ..A........... .......... .......C. .......T...G....A..... ........T... .......... .......... ....... 
 90 >A/NY/1682/2009/04/27             ..A........... .......... .......C. .......T...G....A..... ........T... .......... .......... ....... 
 91 >A/Indiana/09/2009/04/22          .............. ........T. .......C. ...................... ........T... .......... .......... ....... 
 92 >A/Washington/09/2009/04/28       ........G..... ---------- .......C. ...................... ........T... ---------- ---------- ....... 
 93 >A/New Mexico/04/2009/04/26       -------------- ---------- --------- ...................... ........T... .......... ---------- ....... 
 94 >A/Texas/07/2009/04/25            .............. ........T. --------- .....A........A....... ........T... ---------- .......... ....... 
 95 >A/Minnesota/03/2009/04//         .............. ........T. --------- .....A........A....... ........T..G ........C. .......... .T..... 
 96 >A/Minnesota/02/2009/04/27        .............. ........T. --------- ---------------------- ........T..G ........C. .......... .T..... 
 97 >A/Washington/12/2009/04/27       -------------- ---------- --------- ...................... ........T... ---------- .......... ------- 
 98 >A/Arizona/02/2009/04/26          .............. .........A --------- ...................... ........T... .......... .......... ------- 
 99 >A/Washington/07/2009/04/28       -------------- ---------- --------- ...................... ........T... ---------- .......... ------- 
100 >A/Denmark/513/2009/04/29         -------------- ---------- --------- ...................... ------------ ......A... .......... ....... 
101 >A/Mexico/4486/2009/04/14         ........G..... .......... .......C. .............--------- ........T... .......... ........T. ....... 
102 >A/Kansas/03/2009/04/24           ........G..... .......... .......C. .A...........--------- .C.A....T... ......A... .........A ......T 
103 >A/Hamburg/4/2009///              ........G..... .......... .......C. .A.................... .C.A....T... ......A... .......... ......T 
104 >A/NY/1669/2009/04/26             ........G..... .......... .......C. ...................... .C.A....T... ......A... .......... ....... 
105 >A/Lisboa/26/2009/04//            -------------- ---------- --------- -A.................... ------------ ......A... .......... ....... 
106 >A/England/195/2009/04/28         .A........G... G...G..... ......... ..A................... T........... .......... .......... ....... 
107 >A/South Carolina/09/2009/04/26   .A.A......G... G...G..... --------- ..A.......G........... T......A.... .......... .......... ....... 
108 >A/Castilla-LM/GP9/2009/04/26     -------------- ---------- --------- --A.......G...-------- T........... -----....- .......... ....... 
109 >A/Alabama/02/2009/04/27          .A............ ---------- ...T..... ---------------------- ------------ ---------- ---------- ....... 
---Index------------------------------TGGGAAGAATAGAG ATCCAGATCG AATCGCAAG CGCTAGTGAATAGGGGGAAGCG CTGCGCGGCGGA GAGGTAGATA GGGGGCTCCG TCAGCAC 
-codon-position-----------------------  1 1  12 2 1    2 2  2     1 2  1  1111  1 2  1 1   1 11    111  12     11 11         1112   111  12 
                                      00001111112222 0000111112 000000111 0000000000000111111111 000000011111 0000000111 0000000000 0000000 
                                      05790233580122 3448017792 556789279 0012356678888000112245 122366801123 2233477012 1456678889 0234777 
                                      74956105773628 0572560690 687203348 2349875813779168796806 369946721442 4815148453 8920761273 9665378 
                                      26910881720340 0005811052 180060016 2758168767371280383283 278799978383 0364526450 9220967493 4276858

Explanation:
------------
each row in the table (with ...ACGT) is one virus
each column (in the mid-part) is one out of 13190 nucleotide position in the genome. Positions where all viruses coincide are omitted
these positions are partitioned into the 8 segments separated by a blank column
the first 4 rows read vertically have the count x of the position within the segment
a "." means that the virus has the nucleotide from the index-row at that position. If it differs (mutation) then the nucleotide from {A,C,G,T} is given
a "-" means that the nucleotide at that position is not available
the fifth colum is just (x-1)mod 3 , showing the position within the codon.
Codon position 0 (blank) swapping A with G or C with T are usually synonymous, these mutations don't change the Amino-Acid sequence
and thus widely preserve the properties of the virus.

the coding region is the region which encodes the amino acids, 3 nucleotides for one
amino acid = protein : 13139=2280+2274+2151+1701+1497+1410+982+844 nucleotides
some more nucleotides (~20) are at the start and end of each segment for other tasks
segments are often named: PB2,PB1,PA,HA,NP,NA,M,NS

------------------------------

Erl?uterung:

Positionen wo mindestens s+1 der Viren sich unterscheiden (Parameter s, in spaeteren Versionen t,
default is s=2, sodass Polymorphismen die nur einmal auftreten
in der Tabelle ignoriert werden. Dadurch wird die Breite der Tabelle reduziert.)
Segmente werden waagerecht durch Leerspalten getrennt.
Ersten 4 Zeilen geben die Nukleotid-Position im Segment an, 4 Ziffern senkrecht gelesen.
Naechste Zeile gibt die Position im Codon an, 3 Nukleotide formen eine Aminosaeure.
Positionen 1,2 als Ziffern und - 3 ist ein Leezeichen.
Die Index-Zeile gibt die Referenz-Sequenz an, normalerweise die haeufigsten Nukleotide
an jeder Position fuer die Sequenzen der Tabelle. Oder optional (Parameter f) eine
frei gewaehlte Sequenz der Tabelle.
Dann kommen die Sequenzen mit ihren Nukleotiden an den kritischen Positionen,
ein Punkt (.) signalisiert Uebereinstimmung mit der Referenz-Sequenz,
Bindestrich (-) bedeuted, dass diese Position nicht verfuegbar ist.
Untern nochmal die Index(Referenz-)Sequenz,Codon-Positionen und 4 Zeilen mit
den Segment-Positionen.

Der H-Parameter erlaubt die Sortierung der Sequenzen, um die Summe der Differenzen
zwischen Nachbarn zu minimieren.

C-Programm "seqa.c" in Bearbeitung, derzeitige Version per email, als Datenbank wird eine
aligned,gleichlange Liste mit Viren erwarted, eine Zeile fuer Namen,
eine fuer jedes Segment, nicht verfuegbare Positionen sind "-".
Verschiedene Datenbanken ebenfalls per email.

usage:seqa file [t- s- e- p- h- f-]

analyses the genom-file file
tx threshold below which rarer polymorphisms are ignored (default:2)
p1 prints differences in 1/100 percent instead of direct counts (default)
p2 prints no differences, only the summings
p3 omits the differences-table entirely
p4 omits the polymorphism-table
hx with hillclimbing,iter=x,sorting the viruses, new genom-file in ll
Hx parameter it2 for hill_climbing
rx reduces length, position deleted if less than x sequences are defined there
ex ignores the last x percent of the segments
sx number of segments , 1 line for the name and 1 line for each segment
fx uses virus x as index-case (default:maximum of polymorphisms at each position)

gsgs · Aug 18, 2010

Re: swine flu sequences (thread from h5n1experts)

---------------posted: 2009/05/27-----------------

Thailand swine

Code:

 33 >A/Thailand/271/2005(H1N1)                           

---:183,193,184, 87,164,209,125, 74   A/swine/Tennessee/2/1978(H1N1)
 70:153,168,147,170,131,167,109,131   A/Brevig Mission/1/1918(H1N1)
 68:162,176,163,152,143,168,121,126   A/swine/1931(H1N1)
 27: 61, 56, 69,247, 54, 75, 61,159   A/swine/Germany/2/1981(H1N1)=1578
 32: 61, 66, 24, 44, 52, 78, 25,188   A/swine/Chonburi/NIAH589/2005(H1N1)
 61:183,185,180, 98,161,213,127, 85   A/swine/Tennessee/25/1977(H1N1)
 37:167,140,147,139,162, 94, 56,132   A/swine-flu/index/2009-02-01(H1N1)


  1:158,120,143,406,123,504,101,319   A/Turkey/California/189/66(H9N2)
  2:161,113,147,411,111,509,103,149   A/turkey/Wisconsin/1/1966(H9N2)
  3:158,163,150,439,112,362, 96,144   A/turkey/Ontario/6118/1968(H8N4)
  4:150,164,157,414,118,496,102,302   A/duck/Memphis/546/1974(H11N9)
  5: 89,111,124,401, 96,496, 94,144   A/duck/England/1956(H11N6)
  6:109,112, 97,492, 90,499, 87,140   A/duck/Czechoslovakia/1956(H4N6)
  7:123, 91,122,362, 80,434, 93,138   A/shearwater/Australia/1/1973(H6N5)
  8:121,103,138,368, 97,144, 87,298   A/chicken/Taiwan/G2/87(H6N1)
  9:120, 98,131,369, 97,145, 88,302   A/duck/Taiwan/0526/72(H6N1)
 10:172,121,133,240,127,148,107,317   A/swine/Saskatchewan/18789/02(H1N1)
 11:158,124,132,243,117,211,103,313   A/turkey/MO/21939/1987(H1N1)
 12:163,129,134,468,119,438,106,311   A/pintail/Alaska/779/2005(H3N8)
 13:118, 88,125,466, 88,434, 82,304   A/duck/Chabarovsk/1610/1972(H3N8)
 14:121,114,120,472, 92,434, 88,146   A/Dk/UKR/1/1963(H3N8)
 15: 89,121,110,479, 94,431, 98,139   A/quail/Italy/1117/1965(H10N8)
 16:108,113,131,480, 85,497, 82,316   A/Ck/Germany/n/1949(H10N7)
 17:134,124,128,482,101,513, 90,142   A/fowl/Dobson/1927(H7N7)
 18:134,131,127,477, 97,161,100,141   A/fowl/Rostock/45/1934(H7N1)
 19:158,123,133,473,105,478, 98,313   A/turkey/Oregon/1971(H7N3)
 20: 89,101,101,481, 84,461, 86,140   A/turkey/England/1963(H7N3)
 21: 80, 74,123,348, 72,480, 85,142   A/duck/Germany/1215/1973(H2N3)
 22:116, 97,121,359, 78,479, 82,148   A/tern/South Africa/1961(H5N3)
 23: 97,118, 99,358, 85,136, 87,142   A/Ck/Scotland/1959(H5N1)
 24:122,125,147,356,110,140,100,164   A/Bar-h Gs/Qinghai/62/05(H5N1)
 25: 59, 58, 60,244, 39, 83, 55,161   A/swine/Italy/670/1987(H1N1)
 26: 59, 58, 59,244, 40, 83, 56,161   A/swine/Italy/671/1987(H1N1)
 28: 73, 75, 75,253, 58, 87, 65,184   A/swine/Spain/53207/2004(H1N1)
 29: 72, 77, 78,248, 58, 92, 60,179   A/swine/Spain/51915/2003(H1N1)
 30: 74, 76, 73,250, 61, 81, 52,176   A/Swine/Spain/50047/2003(H1N1)
 31: 61, 66, 24, 45, 52, 78, 25,188   A/swine/Chachoengsao/NIAH587/2005(H1N1)
 33:  0,  0,  0,  0,  0,  0,  0,  0   A/Thailand/271/2005(H1N1)
 34:167,140,147,141,161, 95, 57,133   A/Canada-ON/RV1527/2009
 35:167,141,147,141,161, 95, 56,134   A/New York/18/2009
 36:167,140,148,140,162, 94, 56,132   A/Mexico/InDRE4487/2009
 38:169,141,148,140,162, 94, 56,132   A/California/06/2009
 39:167,140,148,139,162, 94, 55,133   A/Texas/04/2009
 40:167,141,148,139,162, 94, 56,132   A/California/04/2009
 41:167,140,148,139,163, 94, 56,132   A/California/07/2009
 42:167,141,148,139,162, 94, 56,132   A/California/04/2009-04-01/(H1N1)
 43:176,135,167,126,166, 97, 63,115   A/******-match/1-2/07(H3N2)
 44:161,133,146,  0,  0,250,  0,  0   A/mallard duck/South Dakota/Sg-00125/2007(H3N2)
 45:186,144,147,121,169,500,116,113   A/Turkey/MO/24093/99(H1N2)
 46:164,134,149,  0,  0,250,  0,  0   A/swine/Minnesota/SG-00238/2006(H1N1)
 47:162,137,150,  0,  0,250,  0,  0   A/swine/Minnesota/SG-00241/2007(H1N1)
 48:164,126,137,492,172,497,130,111   A/Swine/Texas/4199-2/98(H3N2)
 49:162,134,144,487,168,497,126,109   A/swine/Korea/CY04/2007(H3N2)
 50:162,138,147,  0,  0,250,  0,  0   A/swine/Minnesota/SG-00240/2007(H1N1)
 51:158,134,146,138,169,208,129,127   A/swine/OH/511445/2007(H1N1)
 52:159,134,149,  0,  0,250,  0,  0   A/swine/Illinois/SG-00244/2007(H1N1)
 53:159,134,148,130,169,203,129,131   A/swine/Ohio/24366/07(H1N1)
 54:163,137,  0,130,  0,204,136,  0   A/swine/Ohio/C62006/06(H1N1)
 55:165,133,149,119,168,220,123,113   A/Wisconsin/10/98(H1N1)
 56:160,136,149,129,167,211,132,122   A/Iowa/CEID23/2005(H1N1)
 57:172,131,184,123,168,218,126,127   A/swine/Ontario/53518/03(H1N1)
 58:196,134,191,123,164,219,136,122   A/swine/Ontario/23866/04(H1N1)
 59:194,213,186,115,177,210,131,116   A/swine/Ontario/57561/03(H1N1)
 60:194,194,173,115,160,212,131,123   A/swine/Alberta/56626/03(H1N1)
 62:192,195,190,148,164,503,139,123   A/swine/Miyazaki/1/2006(H1N2)
 63:178,182,180,111,161,206,129,101   A/swine/Wisconsin/1/1967(H1N1)
 64:176,182,180,107,160,201,130,104   A/swine/Wisconsin/2/1966(H1N1)
 65:179,184,184,113,161,203,127,105   A/swine/Wisconsin/1/1961(H1N1)
 66:176,182,183,119,158,201,134,110   A/swine/Wisconsin/1/1957(H1N1)
 67:165,176,169,150,146,179,123,119   A/swine/Ohio/23/1935(H1N1)
 69:163,176,164,153,141,166,120,123   A/swine/Jamesburg/1942(H1N1)
 71:166,175,151,207,149,195,124,149   A/Hickox/1940(H1N1)
 72:165,175,147,203,140,194,120,142   A/Alaska/1935(H1N1)
 73:174,176,161,214,156,199,120,151   A/Index/1977(H1N1)
 74:172,181,161,212,168,207,130,155   A/swine/Tianjin/01/04(H1N1)
 75:173,181,164,212,167,206,123,154   A/swine/Henan/01/06(H1N1)
 76:179,187,163,221,169,211,135,161   A/Kansas/UR06-0068/2007(H1N1)
 77:179,250,  0,224,  0,211,137,  0   A/swine/Ohio/K1130/06(H1N1)
 78:179,250,  0,229,  0,214,140,  0   A/swine/Ohio/K1207/06(H1N1)
 79:164,180,160,217,153,201,128,154   A/Denver/57(H1N1)
 80:166,112,161,351,149,509,127,154   A/Japan/305/57(H2N2)
 81:165,112,161,351,148,510,125,151   A/Index/1957(H2N2)
 82:168,115,159,476,162,504,127,171   A/Russia/WO0200884/72(H3N2)
 83:168,139,168,492,177,505,141,181   A/Texas/UR06-0356/2007(H3N2)
 84: 57, 46, 71,484, 54,504, 42,177   A/swine/Hong Kong/5190/99(H3N2)

gsgs · Aug 18, 2010

Re: swine flu sequences (thread from h5n1experts)

-------------posted:2009/05/28 , updated:2009/05/31---------------
only positions are listed which differ more than once from the index
only the coding region : 13139=2280+2274+2151+1701+1497+1410+982+844 nucleotides
explanation in post 18

Code:

                                      0000000011111111111222 00000000000111122 00000000011 00000000000011111111 000000011111 000000000111111111 0000000 000000000
                                      0000557900233335789012 01112344668077902 00556789979 00123566788800011245 122366801123 222334477000012333 1456889 022346777
                                      1117449516105577174362 15569057032506900 05687203348 23498758237916879606 369946721442 448151148456853123 8920193 956655378
                                      0122679130881377125034 96927000365810502 81180060616 27581687377128038383 278799978383 073641526492050790 9220723 482769858
-codon-position-----------------------12   11 21  1  21 12 1 1      2   2 2 2  2   1 2  1  1111  1   1 1   1 1    111  12     111  11         1     11  1 11 2 12
---Index------------------------------ATATGCGGTAAGATAATTGAGA CGAGCATCGGCAATCTG AGAATCGCGAG CGCTAGTGAAAGGGGGAACG CTGCGCGGCGGA GGAGGGTAGACCGTACAT GGGGTGG TTCAGGCAC
  1 >A/Sw/Alberta/OTH-33-8/2009//     .....T................ ................. ...G.....C. A................... ........T... ..G............... ....... ......A..
  2 >A/CA/06/2009/04/16               ...................... ............G.... ...G.....C. A................... ........T... ..G............... ....... ......A..
  3 >A/CA/05/2009/03/30               ...................... ..........A...... ...G.....C. A................... .....T..T... ..G............... ....... ---------
  4 >A/Idaho/02/2009/04/28            ...................... ----------------- ----------- A.............A..... ....ATA.T... ..G............... ------- ---------
  5 >A/Nebraska/02/2009/04/           ---------------------- ..........A...... ----------- A.............A..... ....ATA.T... ..G............... ------- ......A..
  6 >A/Colorado/03/2009/04/27         ...................... ..........A...... ...G.....C. A.............A..... ....ATAA.... ..G............... ------- ---------
                                                                                                                                                                
  7 >A/Canada-NS/RV1538/2009//        ...............G...... .............C... .........C. .........G......G... ........T... ..............G... ....... .........
  8 >A/Canada-NS/RV1536/2009//        ...............G...... .......T.....C... ......A..C. .........G......G... ........T... ..............G... ....... .........
  9 >A/Canada-NS/RV1535/2009/04/24    ...............G...... .......T.....C... ......A..C. .........G......G... ........T... ..............G... ....... .........
 10 >A/Guangdong/1/2009/05/17         .............CGG...... ................. .........C. .................... ........T... ..............G... ....... .A.......
 11 >A/Washington/09/2009/04/28       .............CGG...... ----------------- .........C. .................... ........T... ------------------ ------- .A.......
 12 >A/Mexico/47N/2009/04/25          ...................... ................. .........C. ..A................. ........T... .AG...........G... ....... .........
 13 >A/Texas/07/2009/04/25            ...................... ..............T.. ----------- .....A.......A...... ........T... ------------------ ....... .........
 14 >A/Minnesota/03/2009/04/          ...................... ..............T.. ----------- .....A.......A...... ........T..G .............C.... ....... ..T......
 15 >A/Minnesota/02/2009/04/27        ...................... ..............T.. ----------- -------------------- ........T..G .............C.... ....... ..T......
 28 >A/Indiana/09/2009/04/22          ...................... ........A.....T.. .........C. .................... ........T... .....A............ ....... .........
 19 >A/Arizona/02/2009/04/26          ...................... ................A ----------- .................... ........T... .................. ....... ---------
 20 >A/Florida/04/2009/04/27          ...................... ................A .........C. .A.................. ........T... .................. ....... ---------
 21 >A/Mexico/4108/2009/04/03         ...................... ................. .........C. ...............A.... ........T... .................. ......A .........
                                                                                                                                                              
 22 >A/Maryland/05/2009/04/29         ......A............... ................. .........C. .......T..G....A.... ........T... ------------------ ------- .........
 23 >A/NY/3099/2009/04/29             ......A............... ................. .........C. .......T..G....A.... ........T... .................. ....... .........
 24 >A/NY/1682/2009/04/27             ......A............... ................. .........C. .......T..G....A.... ........T... .................. ....... .........
 25 >A/New Hampshire/02/2009/04/28    ---------------------- ----------------- .........C. .......T..G....A.... ........T... .................. ....... ---------
 26 >A/New Jersey/02/2009/04/         ......A............... ----------------- .........C. .......T..G....A.... ........T... .................. ------- ....T....
 27 >A/New Jersey/04/2009/04/         ......A............... ----------------- .........C. .......T..G....A.... ........T... .................. ....... ....T....
                                                                                                                                                              
 29 >A/NY/3240/2009//                 ...............G...... ................. .........C. ...........A........ ........T... .................. ....... .........
 30 >A/NY/1669/2009/04/26             ...............G...... ................. .........C. .................... .C.A....T... ........A......... ....... .........
 31 >A/Hamburg/4/2009//               ...............G...... ................. .........C. .A.................. .C.A....T... ........A......... ....... ........T
 32 >A/Kansas/03/2009/04/24           ...............G...... ....T............ .........C. .A..........-------- .C.A....T... ........A......... ......A ........T
 33 >A/Mexico/4486/2009/04/14         ...............G...... ................. .........C. ..............A...T. ........T... .................. ....... .........
                                                                                                                                                              
 34 >A/Texas/04/2009/04/14            ...........A.......... ......C.......... ..C........ ...............A...A ............ .................. ..A.... .......G.
 35 >A/Texas/05/2009/04/15            ...........A.........C ......C.......... ..C........ ...............A...A ............ .................. ..A.... .......G.
 36 >A/Texas/22/2009/04/26            ---------------------- ......C.......... ----------- ...............A...A ............ A................. ..A.... C......G.
 37 >A/Kansas/02/2009/04/24           ...C.......A.......... ......C.......... ----------- ...............A...A ............ A................. ------- C......G.
 38 >A/Texas/09/2009/04/25            ...C.......A.......... ......C.......... ..C........ ...............A...A ............ A................. ..A.... C......G.
 39 >A/Texas/08/2009/04/24            ...........A.......... ......C.......... ..C........ ...............A...A ............ .................. ..A.... .......G.
 40 >A/Texas/06/2009/04/23            ...........A.......... ----------------- ----------- ...............A...A ............ .................. ..A.... .......G.
 41 >A/Oklahoma/01/2009/04/28         ...........A.......... ----------------- ----------- ...............A...A ............ ------------------ ------- .......G.
 42 >A/North Carolina/05/2009/04/28   ...........A.......... ......C.......... ..C........ ...............A...A ............ .................. ------- ---------
                                                                                                                                                              
 44 >A/Texas/15/2009/04/15            .......A..G........... ................. ..........T .................... ............ .........G........ ....... .........
 45 >A/CA/08/2009/04/09               ..........G......C.... ................. ....C.....T ...C.......AA....... ............ ------------------ ....... .........
 46 >A/CA/04/2009/04/01               ..........G......C.... ................. ....C.....T ...C.......AA....... ............ .........G........ ....... .........
 47 >A/CA/07/2009/04/09               ..........G......C.... ................. ....C.....T ...C.......AA....... ............ .........G........ ....... .........
                                                                                                                                                              
 50 >A/Paris/2573/2009/04/29          ....AA................ T................ ----------- ........G........... ............ .....A............ ....... .........
 51 >A/Paris/2590/2009/04/30          ....AA................ T................ ........... ........G........... ............ ----------TTA..TTA ....... .........
 52 >A/Paris/2592/2009/05/01          ....A..............G.. T....G.....G..... G.......... ..A................. T........... ----------TTA..TTA ....... .........
 53 >A/England/195/2009/04/28         ....A..............G.. .....G.....G..... G.......... ..A................. T........... .................. ....... .........
 54 >A/Sichuan/1/2009/05/10           ....A................. .....G.....G..... ........... ..A................. ............ .................. ....... .........
 55 >A/South Carolina/09/2009/04/26   ....A..A...........G.. .....G.....G..... ----------- ..A................. T......A.... .................. ....... .........
 56 >A/Paris/2580/2009/04/30          ....A..............G.. T....G.....G..... G.......... ..A................. T........... .................. ....... .........
 57 >A/Norway/1168/2009/05/07         ....A...C..........G.. .AGA.G.....G..... -A......... ..A................. T........... .................. .....A. .........
 58 >A/Norway/1177/2009/05/08         ....A...C..........G.. -AGA.G.....G..... -A......... T.A................. T........... .................. .....A. .........
 59 >A/Tennessee/05/2009/04/28        ---------------------- ----------------- .....T..... .................... ............ ....A............. ------- .........
 60 >A/Beijing/01/2009/05/16          ....A................. ...........G..... .....T..... .................... ............ ....A............. ....... .........
 61 >A/Narita/1/2009/05/08            ....A................. ...........G..... .....T..... .................... ............ ....A............. ....... .........
 62 >A/Arizona/01/2009/04/22          ....A................. ----------------- ----------- .................... ............ .................. ....... .........
                                                                                                                                                                 
 63 >A/Osaka-C/1/2009/05/16           ................C.A... .........A.....C. ........A.. .................... ..A......A.. ...A.............. ....... -----A---
 64 >A/Osaka-C/2/2009/05/17           ................C.A... .........A.....C. ........A.. .................... ..A......A.. ...A.............. ....... -----A---
 65 >A/Amagasaki/1/2009//             ................C.A... .........A.....C. ........A.. .................... ..A......A.. ...A.............. ....... -----A---
 66 >A/Hyogo/1/2009/05/17             ................C.A... .........A.....C. ........A.. .................... ..A......A.. ...A.............. ....... -----A---
 67 >A/Osaka/2/2009/05/16             ................C.A... .........A.....C. ........A.. .................... ..A......A.. ...A.............. ....... -----A---
 68 >A/Kobe/1/2009//                  ................C.A... .........A.....C. ........A.. .................... ..A......A.. ...A.............. ....... -----A---
 69 >A/Hyogo/2/2009/05/17             ................C.A... .........A.....C. ........A.. .................... ..A......A.. ...A.............. ....... -----A---
 70 >A/Osaka/1/2009/05/16             ................C.A... -........A.....C. ........A.. .................... ..A......A.. ...A.............. ....... -----A---
 71 >A/Amagasaki/2/2009//             ................C.A... .........A.....C. ........A.. .................... ..A......A.. ...A.............. ....... -----A---
                                                                                                                                                                 
 72 >A/Korea/01/2009/05/02            ...................... ................. ........... .................... ..A......A.. ...A.............. ....... .....A...
 73 >A/Iowa/04/2009/04/24             ...................... ................. ........... ..................T. ..A......A.. ------------------ ....... .........
 74 >A/Nonthaburi/102/2009//          .........G..G......... ----------------- .......T... ----------.....----- ..A......A.. ...A..CG.......... T...... .........
 75 >A/Nonthaburi/102/2009/05/        .........G..G......... ................. .......T... ....G............GT. ..A......A.. ...A..CG.......... T...... .........
 76 >A/THA/104/2009/05/06             .........G..G......... ----------------- .......T... ....G............GT. ..A......A.. ...A..CG.......... T...... ---------
 77 >A/Shandong/1/2009/05/10          ...................... ........A........ ........... ..................T. ..A......A.. ...A...G.......... ....... .........
 78 >A/Mexico/4604/2009/04/19         ...................... ................. ........... ..................T. ..A......A.. ...A...G.......... ....... .........
 79 >A/Texas/23/2009/04/27            ...................... ................. ----------- ..................T. ------------ ...A...G.......... ....... .........
 80 >A/Mexico/4603/2009/04/19         ...................... ................. ........... ..................T. ..A......A.. ...R...R.......... ....C.. .........
 81 >A/Mexico/4482/2009/04/14         ---------------------- ................. ........... ..................T. ..A......A.. ...A...G.......... ....C.. ---------
 85 >A/Beijing/501/2009               ----.................. ----............. --......... ..................T. ..A......A.. --------.......... .....A. .........
 82 >A/Michigan/02/2009/04/26         .....................C ..............T.. ........... ..................T. ..A......A.. .A.A...G.......... .A..... .........
                                                                                                                                                              
 83 >A/NY/3261/2009/04/29             GAT.................A. ................. ........... ......A...........T. ..A......AA. ...A...G.......... .A.A... ...G.....
...and many other similar viruses from New York...                                                                                                               
 84 >A/NY/3215/2009/04/25             ....................A. ................. ........... ......A...........T. ..A......AA. ...A...G.......... .A.A... ...G.....
                                                                                                                                                                 
 16 >A/Israel/644/2009/04/            ...................... ................. ........... -................... ............ .................. ....... .........
 43 >A/Mexico/InDRE4114/2009//        ...................... ............G.... ........... .................... ............ .................. ....... .........
 48 >A/Mexico/4115/2009/04/07         ---------------------- ................. ----------- .................... ............ .................. ....... .........
 49 >A/NY/3178/2009/04/28             GAT................... ....T............ ........... .................... ............ .................. ....... .........
 17 >A/******/index/2009-02-01        ...................... ................. ........... .................... ............ .................. ....... .........
 18 >A/Mexico/InDRE4487/2009/04/14    ...................... ................. ........... .................... ............ .................. ....... .........
---Index------------------------------ATATGCGGTAAGATAATTGAGA CGAGCATCGGCAATCTG AGAATCGCGAG CGCTAGTGAAAGGGGGAACG CTGCGCGGCGGA GGAGGGTAGACCGTACAT GGGGTGG TTCAGGCAC
-codon-position-----------------------12   11 21  1  21 12 1 1      2   2 2 2  2   1 2  1  1111  1   1 1   1 1    111  12     111  11         1     11  1 11 2 12
                                      0000000011111111111222 00000000000111122 00000000011 00000000000011111111 000000011111 000000000111111111 0000000 000000000
                                      0000557900233335789012 01112344668077902 00556789979 00123566788800011245 122366801123 222334477000012333 1456889 022346777
                                      1117449516105577174362 15569057032506900 05687203348 23498758237916879606 369946721442 448151148456853123 8920193 956655378
                                      0122679130881377125034 96927000365810502 81180060616 27581687377128038383 278799978383 073641526492050790 9220723 482769858

30.May , considering viruses from genbank
with >5555 nucleotides available

7 main strains
6 substrains

names chosen by me
(number of characteristic markers) [number of viruses]

Code:

early Mex (0)[6]
   Northern (2)[30]
      swine (6)[6]
      Maryland (6)[6]
      Hamburg (3)[10]
   Texas (7)[9]
   early US (3)[4]
   airplane (1)[13]
     England (6)[7]
   Japan (9)[9]
   Korea (3)[85]
      Shandong (5)[84]
         New York (11)[73]

the successful New York strain with 11 markers was first sequenced on 24.April.
6 new markers appeared suddenly from the assumed (close)ancestor A/Mexico/4482/2009-04-14
another even earlier ancestor may have gone to Korea

swine flu sequences (thread from h5n1experts)

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