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Spain: HP H5N1 in wild bird 2005

Gert van der Hoek

In Memoriam - Editor, Senior Moderator
First Case of Highly Pathogenic H5N1 Avian Influenza Virus in Spain

Marta Barral , Vega Alvarez , Ramon A. Juste , Inigo Agirre and Inaki Inchausti

BMC Veterinary Research 2008, 4:50doi:10.1186/1746-6148-4-50


Published: 10 December 2008

Abstract
(provisional)

Background

The H5N1 strain of avian influenza virus has been involved in severe mortality in domestic poultry, and has also been found in different species of wildlife in Europe. The Basque Country avian influenza surveillance program began sample collection and processing the fall of 2005.

Results

Here we report the first confirmation of the presence of highly pathogenic H5N1 strain in a Great Crested Grebe (Podiceps cristatus) found dead in a pond near Vitoria in the Basque Country on the North of Spain. Regarding the survey for generic influenza type A virus, we have obtained positive results in about 8% of more that 3500 birds examined.

Conclusions

We think that the self-limiting nature of our finding and others proves that certain regions have ecological, geographical and climatological features that make it difficult for the H5N1 virus to spread [1] and cause disease at least in the large scale scenario that has been worrying human and animal health authorities during the last years.

http://www.biomedcentral.com/1746-6148/4/50
 
Re: Spain: HP H5N1 in wild bird

Re: Spain: HP H5N1 in wild bird

A grebe reportedly found dead in Salburua pond and registered in the laboratory on 30
th June 2006.

Clearly Spain does not consider H5N1 in wild birds reportable and they do not have a sensitive surveillance system.​

 
Re: Spain: HP H5N1 in wild bird

Re: Spain: HP H5N1 in wild bird

The haemagglutinin and neuraminidase PCR products were sequenced [5] and the partial sequences deposited in GenBank (Accession numbers: EU636810 and EU636811.​
 
Re: Spain: HP H5N1 in wild bird

Re: Spain: HP H5N1 in wild bird

The closest relatives are viruses found in Italy, Czech Republic and Bavaria in 2006.
 
Re: Spain: HP H5N1 in wild bird

Re: Spain: HP H5N1 in wild bird

A grebe reportedly found dead in Salburua pond and registered in the laboratory on 30

th June 2006.​


Clearly Spain does not consider H5N1 in wild birds reportable and they do not have a sensitive surveillance system.​

Samples consist of 1 to 3 cloacal swabs soaked in virus transport media and serum whenever possible​
 
Re: Spain: HP H5N1 in wild bird

Re: Spain: HP H5N1 in wild bird

A grebe reportedly found dead in Salburua pond and registered in the laboratory on 30

th June 2006.​

Clearly Spain does not consider H5N1 in wild birds reportable and they do not have a sensitive surveillance system.​
As noted above, OIE report was submitted in 2006 (but surveillance system is poor).
 
Re: Spain: HP H5N1 in wild bird 2005

LOCUS EU636810 844 bp cRNA linear VRL 10-DEC-2008
DEFINITION Influenza A virus (A/great crested grebe/Basque
Country/06.03249/2006(H5N1)) segment 6 neuraminidase (NA) gene,
partial cds.
ACCESSION EU636810
VERSION EU636810.1 GI:197239688
KEYWORDS .
SOURCE Influenza A virus (A/great crested grebe/Basque
Country/06.03249/2006(H5N1))
ORGANISM Influenza A virus (A/great crested grebe/Basque
Country/06.03249/2006(H5N1))
Viruses; ssRNA negative-strand viruses; Orthomyxoviridae;
Influenzavirus A.
REFERENCE 1 (bases 1 to 844)
AUTHORS Barral,M., Alvarez,V., Juste,R.A., Agirre,I. and Inchausti,I.
TITLE First case of highly pathogenic H5N1 avian influenza virus in Spain
JOURNAL BMC Vet. Res. (2009) In press
REFERENCE 2 (bases 1 to 844)
AUTHORS Barral,M., Alvarez,V. and Juste,R.A.
TITLE Direct Submission
JOURNAL Submitted (11-APR-2008) Animal Health, Neiker, Instituto Vasco de
Investigacion y Desarrollo Agrario, Berreaga1, Derio 48160, Spain
FEATURES Location/Qualifiers
source 1..844
/organism="Influenza A virus (A/great crested grebe/Basque
Country/06.03249/2006(H5N1))"
/mol_type="viral cRNA"
/strain="A/great crested grebe/Basque
Country/06.03249/2006"
/serotype="H5N1"
/host="great crested grebe"
/db_xref="taxon:555054"
/segment="6"
/country="Spain"
/collection_date="2006"
gene 18..>844
/gene="NA"
CDS 18..>844
/gene="NA"
/codon_start=1
/product="neuraminidase"
/protein_id="ACH53468.1"
/db_xref="GI:197239689"
/translation="MNPNQKIITIGSICMVIGIVSLMLQIGNMISIWVSHSIQTGNQC
QAEPISNTKFLTEKAVASVTLAGNSSLCPISGWAVYSKDNSIRIGSRGDVFVIREPFI
SCSHLECRTFFLTQGALLNDKHSNGTVKDRSPHRTLMSCPVGEAPSPYNSRFESVAWS
ASACHDGTSWLTIGISGPDNGAVAVLKYNGIITDTIKSWRNNILRTQESECACVNGSC
FTVMTDGPSSGQASYKIFKMEKGKVVKSVELDAPNYHYEECSCYPDAGEITCVCRDN"
ORIGIN
1 aaaagcagga gttcaaaatg aatccaaatc agaagataat aaccatcgga tcaatctgta
61 tggtaattgg aatagttagc ttaatgttac aaattgggaa catgatctca atatgggtca
121 gtcattcaat tcagacaggg aatcaatgcc aagctgaacc aatcagcaat actaaatttc
181 ttactgagaa agctgtggct tcagtaacat tagcgggcaa ttcatctctt tgccccatta
241 gcggatgggc tgtatacagt aaggacaaca gtataaggat cggttccagg ggggatgtgt
301 ttgttataag agagccgttc atctcatgct cacacttgga atgcagaact ttctttttga
361 ctcagggagc cttgctgaat gacaagcact ccaatgggac tgtcaaagac agaagccctc
421 acagaacatt aatgagttgt cctgtgggtg aggctccctc cccatataac tcaaggtttg
481 agtctgttgc ttggtcagca agtgcttgcc atgatggcac cagttggttg acaattggaa
541 tttctggtcc agacaatggg gctgtggctg tattgaaata caatggcata ataacagaca
601 ccatcaagag ttggagaaac aacatactga gaactcaaga gtctgaatgt gcatgtgtaa
661 atggctcttg ctttactgta atgactgatg gaccaagtag tgggcaggca tcatataaga
721 tcttcaaaat ggaaaaaggg aaagtggtta aatcagtcga actggatgct cctaattatc
781 actatgagga gtgctcctgt tatcctgatg ccggcgaaat cacatgtgtg tgcagggata
841 attg
 
Re: Spain: HP H5N1 in wild bird 2005

LOCUS EU636811 632 bp cRNA linear VRL 10-DEC-2008
DEFINITION Influenza A virus (A/great crested grebe/Basque
Country/06.03249/2006(H5N1)) segment 4 hemagglutinin (HA) gene,
partial cds.
ACCESSION EU636811
VERSION EU636811.1 GI:197239690
KEYWORDS .
SOURCE Influenza A virus (A/great crested grebe/Basque
Country/06.03249/2006(H5N1))
ORGANISM Influenza A virus (A/great crested grebe/Basque
Country/06.03249/2006(H5N1))
Viruses; ssRNA negative-strand viruses; Orthomyxoviridae;
Influenzavirus A.
REFERENCE 1 (bases 1 to 632)
AUTHORS Barral,M., Alvarez,V., Juste,R.A., Agirre,I. and Inchausti,I.
TITLE First case of highly pathogenic H5N1 avian influenza virus in Spain
JOURNAL BMC Vet. Res. (2009) In press
REFERENCE 2 (bases 1 to 632)
AUTHORS Barral,M., Alvarez,V. and Juste,R.A.
TITLE Direct Submission
JOURNAL Submitted (13-APR-2008) Animal Health, Neiker, Instituto Vasco de
Investigacion y Desarrollo Agrario, Berreaga1, Derio 48160, Spain
FEATURES Location/Qualifiers
source 1..632
/organism="Influenza A virus (A/great crested grebe/Basque
Country/06.03249/2006(H5N1))"
/mol_type="viral cRNA"
/strain="A/great crested grebe/Basque
Country/06.03249/2006"
/serotype="H5N1"
/host="great crested grebe"
/db_xref="taxon:555054"
/segment="4"
/country="Spain"
/collection_date="2006"
gene <1..584
/gene="HA"
CDS <1..584
/gene="HA"
/codon_start=3
/product="hemagglutinin"
/protein_id="ACH53469.1"
/db_xref="GI:197239691"
/translation="QGSGYAADKESTQKAIDGVTNKVNSIIDKMNTQFEAVGREFNNL
ERRIENLNKKMEDGFLDVWTYNAELLVLMENERTLDFHDSNVKNLYDKVRLQLRDNAK
ELGNGCFEFYHRCDNECMESVRNGTYDYPQYSEEARLKREEISGVKLESIGTYQILSI
YSTVASSLALAIMVAGLSLWMCSNGSLQCRICI"
ORIGIN
1 agcaggggag tgggtacgct gcagacaaag aatccactca aaaggcaata gatggagtca
61 ccaataaggt caactcgatc attgacaaaa tgaacactca gtttgaggct gttggaaggg
121 aatttaataa cttagaaagg agaatagaaa atttaaacaa gaagatggaa gacggattcc
181 tagatgtctg gacttataat gctgaacttc tggttctcat ggaaaatgag agaactctag
241 actttcatga ctcaaatgtc aagaaccttt acgacaaggt ccgactacag cttagggata
301 atgcaaaaga gcttggtaac ggttgtttcg agttctatca cagatgtgat aatgaatgta
361 tggaaagtgt aagaaacgga acgtatgact acccgcagta ttcagaagaa gcaagattaa
421 aaagagagga aataagtgga gtaaaattgg aatcaatagg aacttaccaa atactgtcaa
481 tttattcaac agtggcgagc tccctagcac tggcaatcat ggtggctggt ctatctttat
541 ggatgtgctc caatggatcg ctacaatgca gaatttgcat ttaaatttgt gagttcagat
601 tgtagttaaa aacacccttg tttctactaa ta
 
Re: Spain: HP H5N1 in wild bird 2005

Top 100 NA matches (characterization in paper is from lala land)

gb|DQ659324.1| Influenza A virus (St Jude H5N1 influenza seed... 1505 0.0
dbj|AB239311.1| Influenza A virus (A/whooper swan/Mongolia/3/... 1501 0.0
gb|EF205172.1| Influenza A virus (A/turkey/Suzdalka/12/05(H5N... 1499 0.0
gb|EF205170.1| Influenza A virus (A/goose/Suzdalka/10/05(H5N1... 1499 0.0
gb|EF205168.1| Influenza A virus (A/chicken/Suzdalka/06/05(H5... 1499 0.0
gb|DQ464355.1| Influenza A virus (A/swan/Germany/R65/2006(H5N... 1499 0.0
gb|EF486242.1| Influenza A virus (A/chicken/Egypt/12379N3-CLE... 1498 0.0
emb|AM492166.2| Influenza A virus (A/stone marten/Germany/R74... 1496 0.0
gb|EF205169.1| Influenza A virus (A/chicken/Omsk/14/05(H5N1))... 1496 0.0
gb|DQ643984.1| Influenza A virus (A/cat/Germany/606/2006(H5N1... 1496 0.0
gb|DQ659325.1| Influenza A virus (St Jude H5N1 influenza seed... 1496 0.0
dbj|AB239318.1| Influenza A virus (A/whooper swan/Mongolia/4/... 1494 0.0
gb|FJ390029.1| Influenza A virus (A/chicken/Astana/6/2005(H5N... 1490 0.0
emb|FM164821.1| Influenza A virus (A/chicken/Nigeria/OG11/200... 1490 0.0
emb|FM164818.1| Influenza A virus (A/chicken/Nigeria/OG5/2007... 1490 0.0
gb|EF486241.1| Influenza A virus (A/chicken/Egypt/12378N3-CLE... 1490 0.0
dbj|AB239325.1| Influenza A virus (A/whooper swan/Mongolia/6/... 1489 0.0
gb|CY034730.1| Influenza A virus (A/crow/Peshawer/NARC7914/20... 1487 0.0
emb|FM164820.1| Influenza A virus (A/chicken/Nigeria/OG10/200... 1487 0.0
gb|EF362428.1| Influenza A virus (A/chicken/India/NIV33491/06... 1487 0.0
gb|EF362420.1| Influenza A virus (A/chicken/India/NIV33487/06... 1487 0.0
gb|EF205173.1| Influenza A virus (A/chicken/Krasnodar/123/06(... 1487 0.0
gb|EF486250.1| Influenza A virus (A/goose/Egypt/13009N3-SM2/2... 1487 0.0
gb|EF486248.1| Influenza A virus (A/duck/Egypt/13010N3-CLEVB/... 1487 0.0
dbj|AB239304.1| Influenza A virus (A/bar-headed goose/Mongoli... 1485 0.0
gb|EF619973.1| Influenza A virus (A/turkey/Turkey/1/2005(H5N1... 1483 0.0
gb|EF205174.1| Influenza A virus (A/chicken/Tula/4/05(H5N1)) ... 1483 0.0
gb|DQ440579.1| Influenza A virus (A/Cygnus olor/Astrakhan/Ast... 1483 0.0
gb|DQ389159.1| Influenza A virus (A/Cygnus olor/Astrakhan/Ast... 1483 0.0
gb|DQ363924.1| Influenza A virus (A/Cygnus olor/Astrakhan/Ast... 1483 0.0
gb|DQ364997.1| Influenza A virus (A/Cygnus olor/Astrakhan/Ast... 1483 0.0
gb|DQ358747.1| Influenza A virus (A/Cygnus olor/Astrakhan/Ast... 1483 0.0
gb|DQ343503.1| Influenza A virus (A/Cygnus olor/Astrakhan/Ast... 1483 0.0
gb|CY034734.1| Influenza A virus (A/chicken/Manshera/NARC1033... 1481 0.0
gb|CY034732.1| Influenza A virus (A/peacock/Chakshahzad/NARC9... 1481 0.0
gb|CY034728.1| Influenza A virus (A/turkey/Islamabad/NARC7873... 1481 0.0
gb|CY034726.1| Influenza A virus (A/goose/Islamabad/NARC7757/... 1481 0.0
emb|FM164816.1| Influenza A virus (A/chicken/Nigeria/OG2/2007... 1481 0.0
gb|EU401799.1| Influenza A virus (A/peacock/Mansehra-Pakistan... 1481 0.0
gb|EU401798.1| Influenza A virus (A/goose/Lahore-Pakistan/NAR... 1481 0.0
gb|EU401797.1| Influenza A virus (A/turkey/Islamabad-Pakistan... 1481 0.0
gb|EU402400.1| Influenza A virus (A/chicken/Rostov/22-1/2007(... 1481 0.0
gb|EF537887.1| Influenza A virus (A/duck/Doualare/Cameroon/32... 1481 0.0
gb|EF486247.1| Influenza A virus (A/duck/Egypt/12380N3-CLEVB/... 1481 0.0
gb|CY017045.1| Influenza A virus (A/swan/Slovenia/760/2006(H5... 1480 0.0
gb|DQ449642.1| Influenza A virus (A/duck/Kurgan/08/2005(H5N1)... 1480 0.0
gb|DQ399546.1| Influenza A virus (A/Cygnus olor/Astrakhan/Ast... 1480 0.0
gb|DQ399541.1| Influenza A virus (A/Cygnus olor/Astrakhan/Ast... 1480 0.0
gb|DQ363919.1| Influenza A virus (A/Cygnus olor/Astrakhan/Ast... 1480 0.0
gb|DQ365005.1| Influenza A virus (A/Cygnus olor/Astrakhan/Ast... 1480 0.0
gb|DQ323673.1| Influenza A virus (A/chicken/Kurgan/3/2005(H5N... 1480 0.0
emb|FM164819.1| Influenza A virus (A/chicken/Nigeria/LAG6/200... 1478 0.0
gb|DQ887063.1| Influenza A virus (A/chicken/Jalgaon/8824/2006... 1478 0.0
gb|EF205171.1| Influenza A virus (A/goose/Krasnoozerskoe/627/... 1478 0.0
gb|EF486240.1| Influenza A virus (A/chicken/Egypt/1129N3-HK9/... 1476 0.0
gb|EU889100.1| Influenza A virus (A/herring gull/Sweden/V1116... 1474 0.0
gb|EU748905.1| Influenza A virus (A/falcon/Saudi Arabia/D1795... 1474 0.0
gb|CY020655.1| Influenza A virus (A/turkey/Egypt/2253-2/2006(... 1474 0.0
gb|DQ449634.1| Influenza A virus (A/chicken/Kurgan/05/2005(H5... 1474 0.0
gb|DQ230523.1| Influenza A virus (A/grebe/Novosibirsk/29/2005... 1474 0.0
gb|CY029990.1| Influenza A virus (A/chicken/Kuwait/KISR8/2007... 1472 0.0
gb|CY029974.1| Influenza A virus (A/chicken/Kuwait/KISR6/2007... 1472 0.0
gb|CY029966.1| Influenza A virus (A/chicken/Kuwait/KISR5/2007... 1472 0.0
gb|EU429764.1| Influenza A virus (A/duck/Eastern China/58/200... 1472 0.0
gb|EU429747.1| Influenza A virus (A/duck/Eastern China/304/20... 1472 0.0
gb|CY020351.1| Influenza A virus (A/cygnus olor/Italy/808/200... 1472 0.0
gb|EF382360.1| Influenza A virus (A/Egypt/0636-NAMRU3/2007(H5... 1472 0.0
gb|DQ997539.1| Influenza A virus (A/chicken/Jilin/xv/2002(H5N... 1472 0.0
gb|DQ864710.1| Influenza A virus (A/duck/Novosibirsk/02/05(H5... 1472 0.0
gb|EF605599.2| Influenza A virus (A/chicken/Russia_Krasnodar/... 1471 0.0
gb|EU146883.1| Influenza A virus (A/Egypt/902786/2006(H5N1)) ... 1471 0.0
gb|CY017181.1| Influenza A virus (A/guinea fowl/Nigeria/957-1... 1471 0.0
gb|CY017029.1| Influenza A virus (A/duck/Niger/914/2006(H5N1)... 1471 0.0
gb|CY016917.1| Influenza A virus (A/ostrich/Nigeria/1047-25/2... 1471 0.0
gb|CY016797.1| Influenza A virus (A/mallard/Italy/835/2006(H5... 1471 0.0
gb|CY016286.1| Influenza A virus (A/chicken/Nigeria/957-20/20... 1471 0.0
gb|DQ914809.1| Influenza A virus (A/grebe/Tyva/Tyv06-1/2006(H... 1471 0.0
gb|DQ676832.1| Influenza A virus (A/chicken/Mahachkala/05/200... 1471 0.0
gb|FJ461628.1| Influenza A virus (A/Egypt/2947-NAMRU3/2006(H5... 1469 0.0
gb|EU889106.1| Influenza A virus (A/eagle owl/Sweden/V1218/20... 1469 0.0
gb|EU889105.1| Influenza A virus (A/eagle owl/Sweden/V618/200... 1469 0.0
gb|EU889098.1| Influenza A virus (A/smew/Sweden/V820/2006(H5N... 1469 0.0
gb|EU889097.1| Influenza A virus (A/tufted duck/Sweden/V1027/... 1469 0.0
gb|EU889096.1| Influenza A virus (A/tufted duck/Sweden/V998/2... 1469 0.0
gb|CY029998.1| Influenza A virus (A/chicken/Kuwait/KISR9/2007... 1469 0.0
gb|CY029982.1| Influenza A virus (A/chicken/Kuwait/KISR7/2007... 1469 0.0
gb|CY029958.1| Influenza A virus (A/chicken/Kuwait/KISR3/2007... 1469 0.0
gb|CY029950.1| Influenza A virus (A/chicken/Kuwait/KISR2/2007... 1469 0.0
emb|AM749445.1| Influenza A virus (A/mute swan/Germany/R1349/... 1469 0.0
gb|EU277835.1| Influenza A virus (A/chicken/Burkina Faso/1347... 1469 0.0
gb|EU146891.1| Influenza A virus (A/chicken/Egypt/1/2006(H5N1... 1469 0.0
gb|EF523704.1| Influenza A virus (A/whooper swan/Denmark/7275... 1469 0.0
gb|EF523703.1| Influenza A virus (A/tufted duck/Denmark/6540/... 1469 0.0
gb|EF523701.1| Influenza A virus (A/tufted duck/Denmark/6431/... 1469 0.0
gb|EF523700.1| Influenza A virus (A/peregrine/Denmark/6632/06... 1469 0.0
gb|EF523699.1| Influenza A virus (A/peacock/Denmark/60295/06(... 1469 0.0
gb|EF532641.1| Influenza A virus (A/chicken/Gaza/713/2006(H5N... 1469 0.0
gb|EF532639.1| Influenza A virus (A/chicken/Gaza/450/2006(H5N... 1469 0.0
gb|EF532637.1| Influenza A virus (A/chicken/Israel/397/2006(H... 1469 0.0
gb|EF532636.1| Influenza A virus (A/turkey/Israel/365/2006(H5... 1469 0.0
 
Re: Spain: HP H5N1 in wild bird 2005

Top 100 HA sequences

gb|DQ864711.1| Influenza A virus (A/duck/Novosibirsk/02/05(H5... 1124 0.0
gb|EU748903.1| Influenza A virus (A/falcon/Saudi Arabia/D1795... 1119 0.0
gb|EF619980.1| Influenza A virus (A/turkey/Turkey/1/2005(H5N1... 1119 0.0
gb|DQ864719.1| Influenza A virus (A/chicken/Volgograd/236/06(... 1119 0.0
gb|DQ659326.1| Influenza A virus (St Jude H5N1 influenza seed... 1119 0.0
gb|DQ407519.1| Influenza A virus (A/turkey/Turkey/1/2005(H5N1... 1119 0.0
gb|EU496391.1| Influenza A virus (A/duck/Egypt/07264S-NLQP/20... 1115 0.0
gb|EF362426.1| Influenza A virus (A/chicken/India/NIV33491/06... 1115 0.0
gb|EF362418.1| Influenza A virus (A/chicken/India/NIV33487/06... 1115 0.0
gb|EF205159.1| Influenza A virus (A/chicken/Krasnodar/123/06(... 1115 0.0
gb|EF205158.1| Influenza A virus (A/turkey/Suzdalka/12/05(H5N... 1115 0.0
gb|EF205157.1| Influenza A virus (A/goose/Krasnoozerskoe/627/... 1115 0.0
gb|EF205154.1| Influenza A virus (A/chicken/Suzdalka/06/05(H5... 1115 0.0
gb|EU146880.1| Influenza A virus (A/chicken/Egypt/2/2006(H5N1... 1113 0.0
gb|EU146878.1| Influenza A virus (A/Iraq/756/2006(H5N1)) segm... 1112 0.0
gb|EF605603.1| Influenza A virus (A/chicken/Russia_Krasnodar/... 1112 0.0
gb|CY034733.1| Influenza A virus (A/chicken/Manshera/NARC1033... 1110 0.0
gb|CY034725.1| Influenza A virus (A/goose/Islamabad/NARC7757/... 1110 0.0
gb|EU401795.1| Influenza A virus (A/goose/Lahore-Pakistan/NAR... 1110 0.0
gb|EU401794.1| Influenza A virus (A/turkey/Islamabad-Pakistan... 1110 0.0
gb|EU146877.1| Influenza A virus (A/Iraq/754/2006(H5N1)) segm... 1110 0.0
gb|EF205155.1| Influenza A virus (A/chicken/Omsk/14/05(H5N1))... 1110 0.0
gb|DQ997172.1| Influenza A virus (A/duck/Hubei/wq/2003(H5N1))... 1110 0.0
gb|DQ997163.1| Influenza A virus (A/duck/Hubei/wp/2003(H5N1))... 1110 0.0
gb|DQ864721.1| Influenza A virus (A/wild duck/Omsk/103-01/05(... 1110 0.0
gb|DQ659327.1| Influenza A virus (St Jude H5N1 influenza seed... 1110 0.0
gb|EU372947.1| Influenza A virus (A/chicken/Egypt/06959-NLQP/... 1108 0.0
gb|EU372946.1| Influenza A virus (A/chicken/Egypt/06541-NLQP/... 1108 0.0
gb|CY034727.1| Influenza A virus (A/turkey/Islamabad/NARC7873... 1106 0.0
gb|EU146866.1| Influenza A virus (A/chicken/Egypt/3/2006(H5N1... 1106 0.0
gb|EF205160.1| Influenza A virus (A/chicken/Tula/4/05(H5N1)) ... 1106 0.0
gb|EF205156.1| Influenza A virus (A/goose/Suzdalka/10/05(H5N1... 1106 0.0
emb|AM492165.1| Influenza A virus (A/stone marten/Germany/R74... 1106 0.0
gb|EU496392.1| Influenza A virus (A/duck/Egypt/07322S-NLQP/20... 1104 0.0
gb|DQ864720.1| Influenza A virus (A/cat/Dagestan/87/06(H5N1))... 1104 0.0
gb|EU146876.1| Influenza A virus (A/Iraq/659/2006(H5N1)) segm... 1103 0.0
gb|EU233691.1| Influenza A virus (A/chicken/Korea/CA7/2006(H5... 1101 0.0
gb|EU233707.1| Influenza A virus (A/duck/Korea/Asan5/2006(H5N... 1101 0.0
gb|EU233731.1| Influenza A virus (A/environment/Korea/W149/20... 1101 0.0
gb|EF395844.1| Influenza A virus (A/cat/Austria/649/2006(H5N1... 1101 0.0
gb|DQ997276.1| Influenza A virus (A/goose/Jilin/hb/2003(H5N1)... 1101 0.0
gb|DQ643982.1| Influenza A virus (A/cat/Germany/606/2006(H5N1... 1101 0.0
gb|DQ464354.1| Influenza A virus (A/swan/Germany/R65/2006(H5N... 1101 0.0
gb|DQ864717.1| Influenza A virus (A/goose/Crimea/615/05(H5N1)... 1101 0.0
emb|AM262543.1| Influenza A virus (A/chicken/Nigeria/BA211/20... 1101 0.0
emb|AM262542.1| Influenza A virus (A/chicken/Nigeria/BA210/20... 1101 0.0
gb|EU146867.1| Influenza A virus (A/Egypt/902782/2006(H5N1)) ... 1099 0.0
gb|EF395845.1| Influenza A virus (A/swan/Austria/216/2006(H5N... 1099 0.0
gb|CY034731.1| Influenza A virus (A/peacock/Chakshahzad/NARC9... 1097 0.0
gb|EU700511.1| Influenza A virus (A/saker falcon/Kuwait/0286/... 1097 0.0
gb|EU233683.1| Influenza A virus (A/chicken/Korea/IS2/2006(H5... 1097 0.0
gb|EF614305.1| Influenza A virus (A/swan/Romania/RO-AI-007/CT... 1097 0.0
emb|AM262549.1| Influenza A virus (A/chicken/Nigeria/SO461/20... 1097 0.0
emb|AM262544.1| Influenza A virus (A/chicken/Nigeria/SO227/20... 1097 0.0
emb|AM400978.1| Influenza A virus (A/chicken/Nigeria/SO461/20... 1097 0.0
emb|AM400975.1| Influenza A virus (A/chicken/Nigeria/SO227/20... 1097 0.0
gb|AY609312.1| Influenza A virus (A/chicken/Guangdong/174/04(... 1097 0.0
gb|EU496389.1| Influenza A virus (A/chicken/Egypt/07202-NLQP/... 1095 0.0
gb|EU233723.1| Influenza A virus (A/quail/Korea/KJ4/2006(H5N1... 1095 0.0
gb|EF382359.1| Influenza A virus (A/Egypt/0636-NAMRU3/2007(H5... 1095 0.0
gb|DQ650663.1| Influenza A virus (A/chicken/Crimea/08/2005(H5... 1095 0.0
gb|DQ650659.1| Influenza A virus (A/chicken/Crimea/04/2005(H5... 1095 0.0
gb|DQ230522.1| Influenza A virus (A/duck/Novosibirsk/56/2005(... 1095 0.0
gb|DQ230521.1| Influenza A virus (A/grebe/Novosibirsk/29/2005... 1095 0.0
gb|EU401796.1| Influenza A virus (A/peacock/Mansehra-Pakistan... 1094 0.0
emb|AM262572.1| Influenza A virus (A/chicken/Nigeria/SO494/20... 1094 0.0
emb|AM262553.1| Influenza A virus (A/chicken/Nigeria/SO493/20... 1094 0.0
gb|CY034729.1| Influenza A virus (A/crow/Peshawer/NARC7914/20... 1092 0.0
gb|EU233739.1| Influenza A virus (A/environment/Korea/W150/20... 1092 0.0
emb|AM262552.1| Influenza A virus (A/chicken/Nigeria/SO485/20... 1092 0.0
emb|AM400981.1| Influenza A virus (A/chicken/Nigeria/SO485/20... 1092 0.0
emb|AM400972.1| Influenza A virus (A/Hooded vulture/Burkina F... 1092 0.0
gb|CY020349.1| Influenza A virus (A/cygnus olor/Italy/808/200... 1092 0.0
gb|DQ676834.1| Influenza A virus (A/chicken/Krasnodar/01/2006... 1092 0.0
gb|DQ449632.1| Influenza A virus (A/chicken/Kurgan/05/2005(H5... 1092 0.0
gb|AY770079.1| Influenza A virus (A/chicken/Hubei/489/2004(H5... 1092 0.0
gb|AY684706.1| Influenza A virus (A/chicken/Hubei/327/2004(H5... 1092 0.0
gb|AY950236.1| Influenza A virus (A/swan/Guangxi/307/2004 (H5... 1092 0.0
gb|AY737296.1| Influenza A virus (A/chicken/Guangdong/178/04(... 1092 0.0
gb|DQ323672.1| Influenza A virus (A/chicken/Kurgan/3/2005(H5N... 1092 0.0
gb|EU723707.1| Influenza A virus (A/whooper swan/Mongolia/244... 1090 0.0
gb|EU233715.1| Influenza A virus (A/duck/Korea/Asan6/2006(H5N... 1090 0.0
gb|EU146869.1| Influenza A virus (A/Iraq/755/2006(H5N1)) segm... 1090 0.0
gb|FJ390028.1| Influenza A virus (A/chicken/Astana/6/2005(H5N... 1088 0.0
gb|EU496384.1| Influenza A virus (A/chicken/Egypt/06612-NLQP/... 1088 0.0
gb|EU443552.1| Influenza A virus (A/Peregrine falcon/Slovakia... 1088 0.0
gb|EU443551.1| Influenza A virus (A/Cygnus olor/Czech Republi... 1088 0.0
gb|EU443550.1| Influenza A virus (A/Mergus albellus/Slovakia/... 1088 0.0
gb|EU443549.1| Influenza A virus (A/Cygnus olor/Czech Republi... 1088 0.0
gb|EU443547.1| Influenza A virus (A/Cygnus olor/Czech Republi... 1088 0.0
gb|EU443546.1| Influenza A virus (A/Cygnus olor/Czech Republi... 1088 0.0
gb|EU443545.1| Influenza A virus (A/Cygnus olor/Czech Republi... 1088 0.0
gb|EU443544.1| Influenza A virus (A/Cygnus olor/Czech Republi... 1088 0.0
gb|EU443543.1| Influenza A virus (A/Cygnus olor/Czech Republi... 1088 0.0
emb|AM773724.1| Influenza A virus (A/black-necked grebe/Germa... 1088 0.0
gb|EU146868.1| Influenza A virus (A/Egypt/902786/2006(H5N1)) ... 1088 0.0
emb|AM262551.1| Influenza A virus (A/chicken/Nigeria/SO478/20... 1088 0.0
emb|AM262550.1| Influenza A virus (A/chicken/Nigeria/SO470/20... 1088 0.0
emb|AM400980.1| Influenza A virus (A/chicken/Nigeria/SO478/20... 1088 0.0
emb|AM400979.1| Influenza A virus (A/chicken/Nigeria/SO470/20... 1088 0.0
 
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