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Researchers unlock secrets of 1918 flu pandemic

Shiloh

Editor, Senior Moderator
Source: http://www.reuters.com/article/scienceNews/idUSTRE4BS56420081229?sp=true

Researchers unlock secrets of 1918 flu pandemic
Mon Dec 29, 2008 5:06pm EST

WASHINGTON (Reuters) - Researchers have found out what made the 1918 flu pandemic so deadly -- a group of three genes that lets the virus invade the lungs and cause pneumonia.

They mixed samples of the 1918 influenza strain with modern seasonal flu viruses to find the three genes and said their study might help in the development of new flu drugs.

The discovery, published in Tuesday's issue of the Proceedings of the National Academy of Sciences, could also point to mutations that might turn ordinary flu into a dangerous pandemic strain.

Yoshihiro Kawaoka of the University of Wisconsin and colleagues at the Universities of Kobe and Tokyo in Japan used ferrets, which develop flu in ways very similar to humans.

Usually flu causes an upper respiratory infection affecting the nose and throat, as well as so-called systemic illness causing fever, muscle aches and weakness.

But some people become seriously ill and develop pneumonia. Sometimes bacteria cause the pneumonia and sometimes flu does it directly.

During pandemics, such as in 1918, a new and more dangerous flu strain emerges.

"The 1918 influenza pandemic was the most devastating outbreak of infectious disease in human history, accounting for about 50 million deaths worldwide," Kawaoka's team wrote.

It killed 2.5 percent of victims, compared to fewer than 1 percent during most annual flu epidemics. Autopsies showed many of the victims, often otherwise healthy young adults, died of severe pneumonia.

"We wanted to know why the 1918 flu caused severe pneumonia," Kawaoka said in a statement.

They painstakingly substituted single genes from the 1918 virus into modern flu viruses and, one after another, they acted like garden-variety flu, infecting only the upper respiratory tract.

But a complex of three genes helped to make the virus live and reproduce deep in the lungs.

The three genes -- called PA, PB1, and PB2 -- along with a 1918 version of the nucleoprotein or NP gene, made modern seasonal flu kill ferrets in much the same way as the original 1918 flu, Kawaoka's team found.

Most flu experts agree that a pandemic of influenza will almost certainly strike again. No one knows when or what strain it will be but one big suspect now is the H5N1 avian influenza virus.

H5N1 is circulating among poultry in Asia, Europe and parts of Africa. It rarely affects humans but has killed 247 of the 391 people infected since 2003.

A few mutations would make it into a pandemic strain that could kill millions globally within a few months.

Four licensed drugs can fight flu but the viruses regularly mutate into resistant forms -- just as bacteria evolve into forms that evade antibiotics.

(Reporting by Maggie Fox, editing by Will Dunham and John O'Callaghan)
 
Re: Researchers unlock secrets of 1918 flu pandemic

Source: http://www.newswise.com/articles/view/547741/

Released: Fri 26-Dec-2008, 12:35 ET
Embargo expired: Mon 29-Dec-2008, 17:00 ET
Scientists Isolate Genes That Made 1918 Flu Lethal

Newswise ? By mixing and matching a contemporary flu virus with the ?Spanish flu? ? a virus that killed between 20 and 50 million people 90 years ago in history?s most devastating outbreak of infectious disease ? researchers have identified a set of three genes that helped underpin the extraordinary virulence of the 1918 virus.

Writing today in the Proceedings of the National Academy of Sciences, a team led by University of Wisconsin-Madison virologists Yoshihiro Kawaoka and Tokiko Watanabe identifies genes that gave the 1918 virus the capacity to reproduce in lung tissue, a hallmark of the pathogen that claimed more lives than all the battles of World War I combined.

?Conventional flu viruses replicate mainly in the upper respiratory tract: the mouth, nose and throat. The 1918 virus replicates in the upper respiratory tract, but also in the lungs,? causing primary pneumonia among its victims, says Kawaoka, an internationally recognized expert on influenza and a professor of pathobiological sciences in the UW-Madison School of Veterinary Medicine. ?We wanted to know why the 1918 flu caused severe pneumonia.?

Autopsies of 1918 flu victims often revealed fluid-filled lungs severely damaged by massive hemorrhaging. Scientists assumed that the ability of the virus to take over the lungs is associated with the pathogen?s high level of virulence, but the genes that conferred that ability were unknown.

Discovery of the complex and its role in orchestrating infection in the lungs is important because it could provide a way to quickly identify the potential virulence factors in new pandemic strains of influenza, Kawaoka says. The complex could also become a target for a new class of antiviral drugs, which is urgently needed as vaccines are unlikely to be produced fast enough at the outset of a pandemic to blunt its spread.

To find the gene or genes that enabled the virus to invade the lungs, Kawaoka and his group blended genetic elements from the 1918 flu virus with those of a currently circulating avian influenza virus and tested the variants on ferrets, an animal that mimics human flu infection.

For the most part, substituting single genes from the 1918 virus onto the template of a much more benign contemporary virus yielded agents that could only replicate in the upper respiratory tract. One exception, however, included a complex of three genes that, acting in concert with another key gene, allowed the virus to efficiently colonize lung cells and make RNA polymerase, a protein necessary for the virus to reproduce.

?The RNA polymerase is used to make new copies of the virus,? Kawaoka explains. Without the protein, the virus is unable to make new virus particles and spread infection to nearby cells.

In the late 1990s, scientists were able to recover genes from the 1918 virus by looking in the preserved lung tissue of some of the pandemic?s victims. Using the relic genes, Kawaoka?s group was able to generate viruses that carry different combinations of the 1918 virus and modern seasonal influenza virus.

When tested, most of the hybrid viruses only infected the nasal passages of ferrets and didn?t cause pneumonia. But one did infect the lungs, and it carried the RNA polymerase genes from the 1918 virus that allowed the virus to make the key step of synthesizing its proteins.

In 2004, Kawaoka and his team identified another key gene from the 1918 virus that enhanced the pathogen?s virulence in mice. That gene makes hemagglutinin, a protein found on the surface of the virus and that confers on viral particles the ability to attach to host cells.

?Here, I think we are talking about another mechanism,? Kawaoka says. The RNA polymerase is used to make copies of the virus once it has entered a host cell. The role of hemagglutinin is to help the virus gain access to cells.

In addition to the study?s lead authors, Watanabe and Kawaoka, co-authors of the new PNAS paper are Shinji Watanabe, Jin Hyun Kim and Masato Hatta, also of UW-Madison; and Kyoko Shinya of Kobe University. The work was funded by the Japanese Ministry of Education, Culture, Sports, Science and Technology and by grants-in-aid from the Ministry of Health, Labor and Welfare of Japan.
 
Re: Researchers unlock secrets of 1918 flu pandemic

Is this a new study? Without a link, it's hard to say.

Kawaoka has done so much of this work, it's hard to say, except I don't recall anything pertaining to the PB1 segment.

.
 
Re: Researchers unlock secrets of 1918 flu pandemic

Viral RNA polymerase complex promotes optimal growth of 1918 virus in the lower respiratory tract of ferrets

  1. <LI id=contrib-1>Tokiko Watanabe<SUP>a</SUP>, <LI id=contrib-2>Shinji Watanabe<SUP>a</SUP>, <LI id=contrib-3>Kyoko Shinya<SUP>b</SUP>, <LI id=contrib-4>Jin Hyun Kim<SUP>a</SUP>, <LI id=contrib-5>Masato Hatta<SUP>a</SUP>, and
  2. Yoshihiro Kawaoka<SUP>a</SUP>,<SUP>b</SUP>,<SUP>c</SUP>,<SUP>d</SUP>,<SUP>1</SUP>
+Author Affiliations
  1. <LI class=aff><ADDRESS><SUP>a</SUP>Department of Pathobiological Sciences, School of Veterinary Medicine, University of Wisconsin-Madison, 2015 Linden Drive, Madison, WI 53706; </ADDRESS><LI class=aff><ADDRESS><SUP>b</SUP>Division of Zoonosis, Department of Microbiology and Infectious Diseases, Graduate School of Medicine, Kobe University, Kobe 650-0017, Japan; and </ADDRESS><LI class=aff><ADDRESS><SUP>c</SUP>Division of Virology, Department of Microbiology and Immunology, and </ADDRESS>
  2. <ADDRESS><SUP>d</SUP>International Research Center for Infectious Diseases, Institute of Medical Science, University of Tokyo, Tokyo 108-8639, Japan </ADDRESS>
  1. Edited by Hans-Dieter Klenk, Philipps-Universitat Marburg, Marburg, Germany, and accepted by the Editorial Board November 13, 2008 (received for review July 18, 2008)
Abstract

The 1918 influenza pandemic was the most devastating outbreak of infectious disease in human history, accounting for about 50 million deaths worldwide. In addition to a significant number of cases of secondary bacterial pneumonia, this highly pathogenic strain of influenza A virus caused fatal primary viral pneumonia. To identify the viral gene(s) chiefly responsible for the high virulence of the 1918 virus, we generated a series of reassortants between the 1918 virus and a contemporary human H1N1 virus (A/Kawasaki/173/2001; K173) using reverse genetics. We then assessed their virulence properties in ferrets, a model closely resembling humans in terms of sensitivity to influenza virus infection and pattern of spread after intranasal inoculation. Substitution of single genes from the 1918 virus in the genetic background of K173 virus did not markedly alter the pattern of infection. That is, the reassortants grew well in nasal turbinates, but only sporadically (if at all) in the trachea and lungs. One exception was the 1918PB1/K173 reassortant, which replicated efficiently in lung tissues as well as the upper respiratory tract. A reassortant virus expressing the 1918 viral RNA polymerase complex (PA, PB1, and PB2) and nucleoprotein showed virulence properties in the upper and lower respiratory tracts of ferrets that closely resembled those of wild-type 1918 virus. Our findings strongly implicate the viral RNA polymerase complex as a major determinant of the pathogenicity of the 1918 pandemic virus. This new insight may aid in identifying virulence factors in future pandemic viruses that could be targeted with antiviral compounds.
Footnotes

  • <SUP>1</SUP>To whom correspondence should be addressed. E-Mail: kawaokay@svm.vetmed.wisc.edu
  • Author contributions: T.W. and Y.K. designed research; T.W., S.W., K.S., J.H.K., and M.H. performed research; T.W., S.W., K.S., and Y.K. analyzed data; and T.W. and Y.K. wrote the paper.
  • The authors declare no conflict of interest.
  • This article is a PNAS Direct Submission. H.-D.K. is a guest editor invited by the Editorial Board.
 
Re: Researchers unlock secrets of 1918 flu pandemic

Thanks. I couldn't find it in the 12/23 issue & didn't have access to the 12/30 issue.

.
 
Re: Researchers unlock secrets of 1918 flu pandemic

Looking back to a 2007 study on Macaques and another of ferrets, they found significance to the K173 mutation.

How does this study augment or contrast to the 2007 studies about K173?

See:

FT thread:
http://www.flutrackers.com/forum/showthread.php?p=62217&highlight=K173#post62217

ferret study (by CDC):
http://www.news-medical.net/?id=21634

macaques study (Journal Watch Infectious Diseases-Jan31, 2007) is post #3 in the referenced FT thread.

.
 
Re: Researchers unlock secrets of 1918 flu pandemic

Viral RNA polymerase complex promotes optimal
growth of 1918 virus in the lower respiratory
tract of ferrets​
Tokiko Watanabe​
a, Shinji Watanabea, Kyoko Shinyab, Jin Hyun Kima, Masato Hattaa, and Yoshihiro Kawaokaa,b,c,d,1

a​
Department of Pathobiological Sciences, School of Veterinary Medicine, University of Wisconsin-Madison, 2015 Linden Drive, Madison, WI 53706; bDivision
of Zoonosis, Department of Microbiology and Infectious Diseases, Graduate School of Medicine, Kobe University, Kobe 650-0017, Japan; and
cDivision of
Virology, Department of Microbiology and Immunology, and
dInternational Research Center for Infectious Diseases, Institute of Medical Science, University
of Tokyo, Tokyo 108-8639, Japan
Edited by Hans-Dieter Klenk, Philipps-Universitat Marburg, Marburg, Germany, and accepted by the Editorial Board November 13, 2008 (received for review
July 18, 2008)

The 1918 influenza pandemic was the most devastating outbreak
of infectious disease in human history, accounting for about 50
million deaths worldwide. In addition to a significant number of
cases of secondary bacterial pneumonia, this highly pathogenic
strain of influenza A virus caused fatal primary viral pneumonia. To
identify the viral gene(s) chiefly responsible for the high virulence
of the 1918 virus, we generated a series of reassortants between
the 1918 virus and a contemporary human H1N1 virus (A/Kawasaki/
173/2001; K173) using reverse genetics. We then assessed
their virulence properties in ferrets, a model closely resembling
humans in terms of sensitivity to influenza virus infection and
pattern of spread after intranasal inoculation. Substitution of
single genes from the 1918 virus in the genetic background of K173
virus did not markedly alter the pattern of infection. That is, the
reassortants grew well in nasal turbinates, but only sporadically (if
at all) in the trachea and lungs. One exception was the 1918PB1/
K173 reassortant, which replicated efficiently in lung tissues as
well as the upper respiratory tract. A reassortant virus expressing
the 1918 viral RNA polymerase complex (PA, PB1, and PB2) and
nucleoprotein showed virulence properties in the upper and lower
respiratory tracts of ferrets that closely resembled those of wildtype
1918 virus. Our findings strongly implicate the viral RNA
polymerase complex as a major determinant of the pathogenicity
of the 1918 pandemic virus. This new insight may aid in identifying
virulence factors in future pandemic viruses that could be targeted
with antiviral compounds.​
pathogenesis​
 pandemic influenza

I​
n the last century, human populations faced three influenza
pandemics: the so-called ??Spanish influenza?? in 1918/1919, the
??Asian influenza?? in 1957, and the ??Hong Kong influenza?? in
1968. Of these, the 1918 pandemic was the most deadly, resulting
in clinical infection of approximately 500 million people, or
about 30% of the world?s population (1). The mortality rate
associated with this virus was unprecedented?more than 2.5%
among infected persons compared with less than 0.1% in other
influenza epidemics?leading to an estimated 20?50 million
deaths worldwide (1?3). The 1918 virus preferentially attacked
young adults, a group that usually has a very low death rate
during influenza epidemics (1, 4). The vast majority of deaths not
caused by secondary bacterial pneumonia were attributed to
either massive acute pulmonary hemorrhage or pulmonary
edema, which often proved fatal within 5 days (1, 5?7).
Unraveling the mechanism(s) of the extraordinary virulence
of the 1918 virus has been a daunting task. Taubenberger and
colleagues succeeded in amplifying and sequencing all 8 RNA
segments of the 1918 virus recovered from preserved lung tissues
of 3 victims of the pandemic (8?14). Using plasmid-driven
reverse genetics systems, we and others generated viruses bearing
all 8 segments of the 1918 strain, enabling study of the
molecular properties associated with the unusual virulence of
this virus (15, 16). The reconstructed 1918 virus causes a highly
pathogenic respiratory infection in mice (15) and macaques (16)
that leads to acute respiratory distress culminating in a fatal
outcome. It also triggers aberrantly high and sustained expression
of genes encoding many proteins involved in the innate
immune response, including proinflammatory cytokines and
chemokines, suggesting that atypical host innate immune responses
may contribute to severe tissue damage, disease, and
death (16). Although the HA gene has been linked to the
extreme pathogenicity of the 1918 virus in mice (15, 17, 18), it
does not contain any motif known to be associated with high
virulence, such as multiple basic acid residues at theHAcleavage
site (9). Thus, other genes may also play a role in its pathogenicity.
Indeed, Tumpey and colleagues (19) recently showed that
the PB1 gene has an important role in efficient replication of the
1918 virus in human airway cells and mouse lung.
A unique feature of the 1918 virus found in our study of
macaques was that its replicative capacity and tissue tropism
differed from those of a contemporary human isolate with low
pathogenicity (A/Kawasaki/173/2001; K173). That is, the 1918
virus was present at high titers in both the upper and lower
respiratory tract tissues, whereas the K173 virus was isolated
primarily from the upper respiratory tract tissues at lower titers
(16). In general, human influenza viruses infect and replicate in
tissues of the upper respiratory tract (20). Hence, it is assumed
that the ability of the 1918 virus to grow in the lower respiratory
tract is associated with its high virulence in humans, but the viral
genes that support such replication are still poorly understood.
To close this gap, we generated a series of reassortant viruses
between the 1918 virus and the human K173 virus and assessed
their virulence properties in ferrets. This model was selected
over mice because the disease manifestation in ferrets to influenza
virus infection and the pattern of spread after intranasal
inoculation are more representative of human influenza virus
infection (21). Here we report that a combination of the 1918
viral polymerase genes (PA, PB1, and PB2), together with the
nucleoprotein (NP) gene, was more effective than any singlegene
substitution, including the HA or PB1 alone, in transforming
the currently circulating K173 virus into a 1918-like strain in

Author contributions: T.W. and Y.K. designed research; T.W., S.W., K.S., J.H.K., and M.H.
performed research; T.W., S.W., K.S., and Y.K. analyzed data; and T.W. and Y.K. wrote the
paper.
The authors declare no conflict of interest.
This article is a PNAS Direct Submission. H.-D.K. is a guest editor invited by the Editorial
Board.​
1​
Towhomcorrespondence should be addressed. E-Mail: kawaokay@svm.vetmed.wisc.edu.
This article contains supporting information online at
www.pnas.org/cgi/content/full/
0806959106/DCSupplemental
.
? 2008 by The National Academy of Sciences of the USA

 January 13, 2009  vol. 106  no. 2  587?591

MICROBIOLOGY​
terms of replicative efficiency and tissue tropism. These findings
may help us identify virulence factors in other emerging pandemic
viruses and could accelerate the development of new
antiviral drugs for prophylaxis and treatment, which are urgently
needed given the obstacles to rapid development of an effective
vaccine against pandemic influenza.​
Results​
Generation of Single-Gene Reassortants Possessing Genes from the
1918 Virus in the Genetic Background of a Contemporary Human H1N1
Virus.​
We and others have demonstrated an important contribution
from the HA gene to the pathogenicity of the 1918 virus
in mice (15, 17, 18). To identify other viral genes that may have
supported the virulence of the 1918 virus, we generated a
spectrum of reassortants possessing genes of the 1918 virus
(A/Brevig Misson/1/18) in the genetic background of a contemporary
human H1N1 virus, A/Kawasaki/173/2001 (K173), using
plasmid-driven reverse genetics (22). The wild-type 1918 and
K173 viruses were also generated by reverse genetics.
To confirm that the replacement of a gene from K173 virus
with that from the 1918 virus does not cause significant growth
defect, we compared the growth kinetics of reassortants with
those of the wild-type viruses in cell culture. Madin-Darby
canine kidney (MDCK) cells were infected with viruses at a
multiplicity of infection (MOI) of 0.001 and their growth kinetics
monitored for 72 h. As shown in Fig. 1, the wild-type 1918 virus
replicated well, reaching a maximum titer at 24 h postinfection
[p.i.; 3.9
 108 plaque-forming units (PFU)/ml], which was one
log higher than that of the K173 virus (1.3
 107 PFU/ml at 48 h
p.i.). Reassortant viruses possessing the PB1 or HA gene of the
1918 virus grew more efficiently in MDCK cells than did the
K173 virus, reaching maximum titers of more than 10
8 PFU/ml.
In contrast, the titers of reassortant viruses possessing the 1918
PA, PB2, NP, M, or NS gene were comparable to that of the
wild-type K173 virus, although a virus expressing the 1918
neuraminidase
(NA) gene replicated slightly slower than did the
K173 virus (Fig. 1). These results suggest that the reassortant
viruses replicated reasonably well in MDCK cells without any
significant growth defect.

Evaluation of the 1918 and K173 Wild-Type Viruses in Ferrets.​
In a
macaque model, we found that the 1918 virus replicated well in
tissues of both the upper and lower respiratory tracts, whereas
the K173 virus was isolated mainly from the upper respiratory
tissues at considerably lower titers (16). To identify the viral
gene(s) of the 1918 virus that promotes efficient spread to the
lower respiratory tract tissues, we evaluated a panel of reassortant
viruses in our ferret model. To validate this model, we
compared the growth properties of the wild-type 1918 and K173
viruses in ferrets intranasally infected with 10
5 PFU of each
virus. On day 3 p.i., both strains replicated well in nasal
turbinates (Table 1) and produced marked pathologic changes in
the nasal mucosa (
supporting information (SI) Table S1 and Fig.
S1
). By contrast, only the 1918 virus was recovered from the
lungs and trachea of infected animals (Table 1). In the lungs of
the 1918 virus-infected ferrets, we observed macroscopic pathologic
changes such as severe lesions and hemorrhage (
Fig. S2C),
as well as severe peribronchitis and bronchopneumonia (Fig.
2
C). Viral antigens were mainly detected on peribronchial glands
and rarely on terminal bronchial epithelia (Fig. 2
D and Table
S1
). Virus was not detected in either the spleen or kidneys. K173
virus, on the other hand, produced only mild peribronchitis and
bronchopneumonia in some lung lobes (Fig. 2
A); viral antigen
could not be detected (Fig. 2
B and Table S1). These results are
consistent with our previous findings in a macaque model (16),
verifying that ferrets are a reliable model for testing the contributions
of individual viral genes to lung pathology.

The 1918 Viral RNA Polymerase Complex Promotes Optimal Spread of
Influenza Virus to the Lower Respiratory Tract of Ferrets.​
Table 1
shows the replication efficiencies of our panel of reassortant
viruses in a ferret model. Most of the single-gene reassortants
replicated similarly to the K173 virus: that is, they showed
reasonably efficient growth in nasal turbinates but poor or no
growth in trachea and lungs. Even the 1918HA/K173 virus
lacked increased growth potential in lower respiratory tract
tissues (Table 1). It also did not cause appreciable macroscopic
pathologic changes in lungs and produced only limited histopathologic
changes (
Table S1 and Figs. S2D and S3 C and D).
By contrast, the 1918PB1/K173 virus was isolated from the
trachea and lungs of two of three ferrets as well as nasal
turbinates (Table 1). Pathologic changes were detected in the
tracheas of infected ferrets, notably migration of neutrophils into
tracheal epithelial cells, focal disarrangement of epithelial cells,
and focal inflammation of tracheal glands (
Fig. S4). In the lungs
of ferrets infected with the 1918PB1/K173 virus, we observed
peribronchitis and bronchopneumonia and detected viral antigens
in the epithelial cells of bronchial glands (
Fig. S3 E and F).
The viral RNA polymerase complex, consisting of three
polymerase proteins (PA, PB1, and PB2) and NP, is responsible

Hours postinfection
1918WT
K173WT
1918(3P+NP)/K173
K173(3P+NP)/1918
1918PA/K173
1918PB1/K173
1918PB2/K173
1918NP/K173
1918HA/K173
1918NA/K173
1918M/K173
1918NS/K173​
Virus titers (log​
10 PFU/ml)

1
2
3
4
5
6
7
8
9
10
0 20 40 60 80​
Fig. 1.​
Growth kinetics of reassortant viruses inMDCKcells.MDCKcells were
infected with reassortant, wild-type 1918, or K173 virus at an MOI of 0.001. At
the indicated times after infection, virus titers in the supernatant were determined
with MDCK cells. The reported values are means
SD from five
experiments.

Table 1. Replication efficiency of 1918/K173 recombinant viruses
in ferrets*​
Virus
Virus titer (mean log​
10PFU SD/g) in:
Nasal
turbinates Trachea Lungs
1918 WT 7.43
0.13 6.65 0.73 6.40 0.40
K173 WT 5.92
0.67 ?? ?
1918(3P
 NP)/K173 6.69 0.37 5.21 0.62 5.98 0.28
K173(3P
 NP)/1918 6.90 0.38 2.72 ?
1918PA/K173 4.26
0.11 ? ?
1918PB1/K173 5.62
0.32 2.84, 1.85 4.31, 5.36
1918PB2/K173 5.24
0.28 ? ?
1918NP/K173 5.55
0.65 ? 3.58
1918HA/K173 5.74
0.11 ? ?
1918NA/K173 4.44
0.02 ? ?
1918M/K173 5.35
1.39 ? ?
1918NS/K173 5.55
0.37 ? 2.36

* Ferrets, anesthetized with ketamine and xylazine, were infected intranasally
with 10​
5 PFU/500 l of virus. Three ferrets from each group were
euthanized on day 3 p.i. for virus titration. Individual titers were recorded
when virus was not recovered from all three ferrets.
? ?, Virus not isolated.

588​
 www.pnas.orgcgidoi10.1073pnas.0806959106 Watanabe et al.

for the transcription and replication of the influenza viral RNA
genome (23). In view of our findings for PB1 (Table 1) and of
a recent report indicating an important role for this gene in
replication of the 1918 virus (19), we asked whether a recombinant
virus expressing all four genes encoding the polymerase
complex (1918[3P​
NP]/K173) would possess a high-growth
phenotype reminiscent of the 1918 pandemic strain. In MDCK
cells, this reassortant replicated very efficiently, reaching a titer
that was comparable to that of the wild-type 1918 virus (1.4


10​
8 PFU/ml; Fig. 1). Additionally, we also examined the growth
property of a recombinant virus, K173(3P
NP)/1918, which
contained three polymerase and NP genes from K173 and the
remaining four genes (HA, NA, M and NS) from the 1918 virus,
and found that the K173(3P
NP)/1918 virus grew slower than
the K173 virus (Fig. 1). In ferrets, the 1918(3P
NP)/K173 virus
replicated more efficiently in both trachea and lungs as well as
nasal turbinates on day 3 p.i., as compared with the wild-type
K173 virus and each of the single-gene reassortants (Table 1).
Pathologic changes were also detected in these tissues (
Table
S1
). Small macroscopic lesions (Fig. S2F) and moderate-tosevere
peribronchitis and bronchopneumonia with viral antigens
were observed in the lungs of ferrets infected with this four-gene
reassortant (Fig. 2
E and F and Table S1). By contrast, replication
of the K173(3P
NP)/1918 virus was limited to nasal
turbinates despite the presence of both the 1918 HA and NA
(Table 1). Thus, the viral RNA polymerase complex appears to
be essential to efficient replication of the 1918 virus in both the
upper and lower respiratory tracts of ferrets and therefore to its
pathogenicity. As shown in
Tables S2?S5, sequence comparison
analysis showed that there are 21, 25, 32 and 34 aa differences
between the PA, PB1, PB2, and NP of the 1918 virus and those
of K173 virus, respectively. Therefore, it is likely that those
amino acid differences are responsible for the growth difference
between the 1918 and K173 viruses observed in the respiratory
tracts of ferrets.

Discussion​
Here we used a ferret model of influenza virus infection to gain
insight into genes responsible for the high-growth phenotype and
extraordinary virulence of the 1918 pandemic virus. Our results,
obtained by replacing genes from a currently circulating human
influenza virus with those from the 1918 virus, show that both
the 1918 polymerase subunit (PA, PB1, and PB2) and NP genes
are required for optimal replication of the contemporary K173
virus in the nasal turbinates, trachea, and lungs of ferrets. This
result suggests that the viral RNA polymerase complex played an
important role in the spread of the 1918 virus from the upper to
the lower respiratory tract.
In general, human influenza viruses infect and replicate in the
upper respiratory tract (20). Because of their poor replication in
the lower respiratory tract, they rarely cause fatal pneumonia,
which tends to be associated with secondary bacterial infection
(20, 24). As in humans, the replication of human influenza
viruses in ferrets is mainly limited to the upper respiratory tract
(20, 25, 26). We recently showed, in macaques, that the 1918
virus differs from a contemporary human virus (K173) in both
its pathogenicity and tissue tropism (16). Unlike the K173 strain,
the 1918 virus was present at high titers in both the upper and​
Terminal bronchus​
A
C
E F​
Peribronchial gland

K173
1918
1918(3P+NP)/K173​
Peribronchial gland
Terminal bronchus​
D​
: bronchitis/bronchopneumonia without viral antigen
: viral antigen​
Left Right
Left Right
Left Right​
B​
Fig. 2.​
Pathologic examination of lungs of ferrets infected with viruses. On day 3 p.i., lung samples were collected from ferrets infected with 105 PFU of the
1918, K173, or 1918(3P
NP)/K173 virus for pathologic examination. (A) In lungs of a K173 virus-infected ferret, peribronchitis and bronchopneumonia were
observed in some lung lobes, but (
B) viral antigen was not detected. In lungs of animals infected with (C) the 1918 virus or (E) the 1918(3PNP)/K173 reassortant,
we observed moderate to severe peribronchitis and bronchopneumonia. Viral antigens were mainly detected in peribronchial gland (arrows) and rarely in
terminal bronchial epithelium (
D and F). (Scale bars, 100 m.) The distribution of viral antigen and bronchitis/bronchopneumonia is shown schematically on the
left. The left lower lobes of the lungs (gray) were used for virologic examination.

Watanabe​
et al. PNAS  January 13, 2009  vol. 106  no. 2  589

MICROBIOLOGY​
lower respiratory tract tissues, whereas the K173 virus was
isolated mainly from the upper respiratory tract at lower titers
(16). This pattern of infection was reiterated in ferrets, in which
the highly pathogenic 1918 virus grew well in trachea, lungs, and
nasal turbinates, while the less pathogenic contemporary K173
virus replicated only in nasal turbinates (Table 1), indicating a
close correlation between the ability of the 1918 virus to infect
the lower respiratory tract and its pathogenicity. Indeed, a
distinct feature of the 1918 virus was its ability to cause fatal
primary viral pneumonia in persons infected during the 1918
pandemic (1, 5, 27). We suggest that the viral RNA polymerase
complex of the 1918 virus was a major contributor to the efficient
spread of virus from the upper to the lower respiratory tract and
therefore to the exceptional severity of the ??Spanish?? influenza.
How does the 1918 viral RNA polymerase complex contribute
to the efficient spread of virus to the lower respiratory tract? One
possible explanation is simply that it contributes to the increased
replication ability of the virus, a characteristic which likely allows
the virus to overcome the host immune responses, facilitating
efficient virus replication in the lower respiratory tract. This
increased ability to replicate could result from the enhanced
polymerase activity of viral polymerase complex. The PB1
segment within the polymerase complex is particularly interesting
because both the 1957 and 1968 pandemic viruses contained
this segment, in addition to the HA and/or NA segments, from
avian viruses (28). Since the 1918 pandemic virus is thought to
have originated from spread and adaptation of an avian virus to
humans (13, 29), it likely contained the avian PB1 gene. Moreover,
in a minireplicon system, an avian virus PB1 supported
virus-like RNA replication and transcription better than a
human virus PB1 (30), suggesting that the avian gene confers an
important replicative advantage in mammals. This property may
reflect the polymerase activity of the PB1 protein itself or the
recently discovered proapoptotic viral protein, PB1-F2, which is
encoded by the PB1 gene (31). Recent studies have implicated
PB1-F2 in the enhanced pathogenicity of the 1918 virus (32, 33),
although the molecular basis for this involvement remains
unclear. Mazur,​
et al. (34) have proposed a novel function for
PB1-F2, whereby this protein indirectly regulates polymerase
activity through its interaction with PB1. A different tissue
tropism controlled by the polymerase complex could be another
possible explanation. For example, the 1918 polymerase complex
may be able to better use a lung-specific cellular factor to support
virus replication or to circumvent a cellular factor that inhibits
virus replication, leading to efficient viral replication in the lung
tissues. As shown in
Table S3, we found that there are 25 aa
differences between the PB1 of the 1918 virus and that of K173
virus. Thus, some of the amino acid differences found between
the two PB1 proteins may be responsible for the difference in
viral replication in the lower respiratory tract of ferrets.
Earlier evaluations in mice suggested that the HA gene exerts
a critical influence on the pathogenicity of the 1918 virus (15, 17,
18). In one study, we showed that a recombinant influenza virus
possessing the 1918 HA gene strongly induced proinflammatory
cytokines in infected mice (18). These data also suggested that
the 1918 HA is a critical determinant of macrophage activation,
especially early in infection, and of the production of chemoattractants
for neutrophils, leading to the trafficking of neutrophils
and acute lung injury (18). We subsequently showed that infection
of nonhuman primates with the 1918 virus triggered high,
sustained expression of genes involved in innate immune responses,
such as proinflammatory cytokines and chemokines
(16), but induced fewer IFN-
genes, which likely enhanced viral
replication (16). ??Overactive?? innate immune responses have
also been observed in mice inoculated with the 1918 virus (35),
as well as in hosts infected with avian H5N1 influenza viruses
(36?39). These findings implicate the HA gene in the strong
immune responses associated with infection by the 1918 virus;
however, in ferrets, a single-gene reassortant virus expressing the
1918 HA gene failed to establish infection in lung tissues (Table
1 and
Fig. S3 C and D). Thus, in hosts with relative resistance to
influenza virus infection, the 1918 and H5N1 HAs may not be
sufficient alone to confer a high-virulence phenotype.
Reassortant virus possessing the 1918 NA gene, designated
1918NA/K173 virus, replicated less efficiently both in vitro and
in vivo than did the K173 virus (Fig. 1 and Table 1), despite
evidence that this gene is required for optimal replication and
virulence of the 1918 virus (19). The NA protein facilitates the
mobility of virions by removing sialic acid residues from viral
glycoproteins and infected cells during both entry and release
from cells (40?43). The balance between the receptor-binding
activity of the HA and the sialidase activity of the NA is crucial
for efficient virus replication in host cells (44). Hence, replacement
of a currently circulating NA gene with the 1918 NA gene
would be expected to disrupt the usual balance between the HA
and NA, leading to attenuation of the reassortant, as was seen
with the 1918NA/K173 virus.
Understanding the molecular basis of the high-virulence
phenotype of the 1918 pandemic virus is important, as it could
identify useful targets for drug intervention when new pandemic
viruses begin to emerge. Our data, obtained in a ferret
model closely simulating influenza virus infection in humans,
suggest that the viral RNA polymerase complex contributes
importantly to the efficient spread of virus to the lower
respiratory tract and may be required, together with a specific
HA, to induce fatal pneumonias, such as those encountered
during the 1918pandemic.

Materials and Methods​
Cells.​
293T human embryonic kidney cells and MDCK cells were maintained in
DMEM supplemented with 10% FCS and in MEM (MEM) containing 5%
newborn calf serum, respectively. All cells were maintained at 37 ?C in5%CO
2.

Plasmid-Driven Reverse Genetics.​
All reassortant viruses and the parental 1918
and K173 viruses were generated from plasmids. Each reassortant expressed
one of the eight viral RNA segments or the PA, PB1, and PB2 plus NP (3P
NP)
genes, as described by Neumann,
et al. (22). Forty-eight hours posttransfection,
viruses were harvested and used to inoculate MDCK cells for the production
of stock viruses. Eight genes of each transfectant virus were partially
sequenced to confirm the origin of the gene. All experiments with live viruses
and with transfectants generated by reverse genetics were performed in an
enhanced biosafety level 3 (BSL3) containment laboratory approved for such
use by the Centers for Disease Control and Prevention and the U.S. Department
of Agriculture.

Replicative Properties of the Transfectant Viruses in MDCK Cells.​
MDCK cells
were infected with the 1918, K173, or reassortant viruses at an MOI of 0.001,
overlaid withMEMmedium containing 1.0
g of trypsin per ml, and incubated
at 37 ?C. At select times, supernatants were assayed for infectious virus in
plaque assays on MDCK cells.

Ferret Experiments.​
Four- to six-month-old female ferrets (Triple F Farms and
Marshall Farms) that were serologically negative by hemagglutination inhibition
assay for currently circulating influenza viruses were used in this study.
They were anesthetized with ketamine and xylazine (5 mg and 0.5 mg per kg
of body weight, respectively) intramuscularly and infected intranasally with
500
l (105 PFU) of virus. On day 3 p.i., the animals were euthanized for
virologic and pathologic examinations. Virus titers in the organs were determined
by plaque assay on MDCK cells.

Pathologic Examination.​
Ferrets infected with the K173, 1918HA/K173,
1918PB1/K173, 1918(3P
NP)/173, or 1918 virus were euthanized on day 3 p.i.
for pathologic examination. Excised tissues of the nasal turbinates, trachea,
and lungs were preserved in 10% phosphate-buffered formalin. Tissues were
then processed for paraffin embedding and cut into 5-
m-thick sections. A
section from each tissue sample was stained with standard hematoxylin and
eosin and another was processed for immunohistologic staining with rabbit
anti-H1N1 influenza virus polyclonal antibody (anti-A/WSN/33). Specific anti-

590​
 www.pnas.orgcgidoi10.1073pnas.0806959106 Watanabe et al.

gen-antibody reactions were visualized by 3, 3​
 diaminobenzidine tetrahydrochloride
staining with a Dako EnVision system (Dako Co. Ltd.).

ACKNOWLEDGMENTS.​
We thank M. McGregor and K. Wells for technical
assistance and J. Gilbert for editing the manuscript. This work was supported
by a grant-in-aid for Specially Promoted Research and by a contract research
fund for the Program of Funding Research Centers for Emerging and Reemerging
Infectious Diseases from the Ministry of Education, Culture, Sports,
Science and Technology, and by grants-in-aid from the Ministry of Health,
Labor, Welfare of Japan.

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Re: Researchers unlock secrets of 1918 flu pandemic

my summary:

the combination of 1918 PA,PB1,PB2,NP segments ("genes")
was more effective (for replication in lungs) than any
single substitution in ferrets

21, 25, 32, 34 aa differences between the PA, PB1, PB2, NP
of the 1918 virus and the tested K173

which of these are responsible was not determined


(are they paid by # of words ?)
 
Re: Researchers unlock secrets of 1918 flu pandemic

my summary:

the combination of 1918 PA,PB1,PB2,NP segments ("genes")
was more effective (for replication in lungs) than any
single substitution in ferrets

21, 25, 32, 34 aa differences between the PA, PB1, PB2, NP
of the 1918 virus and the tested K173

which of these are responsible was not determined


(are they paid by # of words ?)
The study showed that the full complex of internal genes were more efficient than component parts on a heterologous background. PERIOD.
 
Re: Researchers unlock secrets of 1918 flu pandemic

Under MICROBIOLOGY, where it says that avian PB1 supports a replicative advantage in mammals, ... How does that compare to replication in avians? Does this seeming incompatibility produce a higher replication in a new host? Is that part of the adaptation to a new host?

Also under MICROBIOLOGY, where is says that a relative resistance to influenza may mean that 1918 and H5n1 HAs alone may not be enough to confer high virulence,......are they saying that people with a history of seasonal circulating infuenza may have some protection against HPAI? If I'm understanding those statements corrently, it should be easy to prove - check the history of H5N1 patients.

(sorry not to use a quote, but my new system isn't cooperating with that action)

.
 
Re: Researchers unlock secrets of 1918 flu pandemic

#1;2:

"They painstakingly substituted single genes from the 1918 virus into modern flu viruses and, one after another, they acted like garden-variety flu, infecting only the upper respiratory tract."

"Discovery of the complex and its role in orchestrating infection in the lungs is important because it could provide a way to quickly identify the potential virulence factors in new pandemic strains of influenza, Kawaoka says. The complex could also become a target for a new class of antiviral drugs, which is urgently needed as vaccines are unlikely to be produced fast enough at the outset of a pandemic to blunt its spread."


Good purposes indeed but, after decades of worldwide research (speaking respectfully), apart many cohortas of doomsday deadly patented new previously unexistant viruses (dangerous itselfs to humankind and animals), it can't be seen much of that new antiviral drugs expected outcome on the market.
 
Re: Researchers unlock secrets of 1918 flu pandemic

Please read my blog at www.scottmcpherson.net for a different angle on this story. I am hoping for lively discussion.
Thank you Scott,
I visioned it only now when I return on.

Certainly on the trail of the relaxed path discussions a year ago.

This way, at one moment somebody would start something without to be able to stop it, an math probability event.

Seems the "Mount Dragon" book events in real, but without the entrenched facility ...
 
Re: Researchers unlock secrets of 1918 flu pandemic

Mr. Mcpherson raises some interesting questions about the relationship of this latest piece of research to prior work, even though it's quite common that press headlines inflate the significance of the research:


"I used to read scientific papers voraciously -- that is, until I had to start paying for them to gain access. I am sure Dr. Kawaoka is doing some really fine research up there in Madison. But I cannot help but feel I am reading the same headline over and over and over and over again. Kawaoka claims that he found that "single gene" back in 2004 when he spliced 1918 genes onto common seasonal influenza A. Then he said in 2007 that he didn't know what "it" was. Then in December 2008, he says he has found "it" again! And this time, "it" is three genes.

And forgive me, I cannot help but feel that somehow, grant dollars are tied to these headlines. "Publish or perish" is the mantra when it comes to these types of careers. But can someone tell me in terms I can understand what the difference is between these three studies? I am reminded of Omar Bradley's comment that giving Patton a headline meant he was good for another twenty miles. Now substitute the word "grant" for "miles."
 
Re: Researchers unlock secrets of 1918 flu pandemic

Wasn't an research job which handled textualy:
#1,2: "substituted single genes from the 1918 virus into modern flu viruses"
falling into restricted mil./... biosafety guideliness and lab. facility research - because it consist in the creation of novel deadly doomsday viruses, instead of be quoted/treated as University campus lab. research under relaxed quideliness elsewhere.

Few humans at undersafety work treating the health of bilions.
The tweelight zone of scientific research ...

As ScottM. commenting at his site:
"Dr. Robert Webster has stated publicly that he believes the 1977 "age-specific pandemic" (my words) of H1N1 was the result of a Soviet lab accident. Wouldn't it be terribly ironic if a hybrid pandemic virus was foisted upon society by those looking to solve its lethality who moved their ops to another nation because they perhaps didn't like who was peering over their shoulder?"
 
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