gsgs
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here are the best candidates for recombination from
a search of 878 PB2-sequences from H1,H5,H7,H9 - viruses.
Note, that the two recombinants are always from the same H- class
a search of 878 PB2-sequences from H1,H5,H7,H9 - viruses.
Note, that the two recombinants are always from the same H- class
Code:
score virus 1 virus2
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00000000000000 Tree sparrow/Henan/2/04(H5N1) Tree sparrow/Henan/4/04()
00000000000000 Ck/Viet Nam/38/2004(H5N1) SCk/HK/YU100/2002(H5N1)
00000000000000 Dk/Guangxi/668/2004(H5N1) goose/Guangxi/914/2004()
00000000000000 swine/Alberta/56626/03(H1N1) swine/Ontario/53518/03()
00000000000014 Turkey/California/189/66(H9N2)turkey/Wisconsin/66(H9N2)
00000000000080 WildDk/Guangdong/314/04(H5N1) Ck/Henan/13/2004 (H5N1)
00000000616322 Ck/Henan/43/02(H9N2) Ck/Jilin/53/01(H9N2)
00000002931656 swine/Ontario/55383/04(H1N2) Swine/Tennessee/24/77 ()
00000005653026 Dk/Shantou/1042/00(H9N2) Dk/Shantou/1043/00(H9N2)
00000016234763 Dk/Shantou/1881/00(H9N2) Dk/HK/Y439/97(H9N2)
00000024360053 goose/HK/23/1978(H5N3) Tree sparrow/Henan/1/04()
00000448690774 swine/Korea/S452/2004(H9N2) Ck/Korea/S4/03(H9N2)
[FONT=Arial]p=0.0000000000000000000 n1= 79 n2=512 length=2280 differences= 114 split=1250 0079 A/Tree sparrow/Henan/2/2004(H5N1) 0512 A/Tree sparrow/Henan/4/2004(H5N1)
p=0.0000000000000000000 n1=114 n2=143 length=2274 differences= 75 split=1650 0114 A/Ck/Viet Nam/38/2004(H5N1) 0143 A/SCk/HK/YU100/2002(H5N1)
p=0.0000000000000000000 n1=367 n2=489 length=2268 differences= 84 split=1450 0367 A/duck/Guangxi/668/2004(H5N1) 0489 A/goose/Guangxi/914/2004(H5N1)
p=0.0000000000000000000 n1=753 n2=814 length=2282 differences= 299 split= 550 0753 A/swine/Alberta/56626/03(H1N1) 0814 A/swine/Ontario/53518/03(H1N1)
p=0.0000000000000000014 n1=867 n2=868 length=2257 differences= 84 split=1400 0867 A/Turkey/California/189/66(H9N2) 0868 A/turkey/Wisconsin/66(H9N2)
p=0.0000000000000000080 n1=186 n2=310 length=2341 differences= 78 split=1150 0186 A/WildDuck/Guangdong/314/2004 (H5N1) 0310 A/Chicken/Henan/13/2004 (H5N1)
p=0.0000000000000616322 n1=428 n2=459 length=2341 differences= 59 split=1900 0428 A/chicken/Henan/43/02(H9N2) 0459 A/chicken/Jilin/53/01(H9N2)
p=0.0000000000002931656 n1=754 n2=756 length=2280 differences= 47 split=1900 0754 A/swine/Ontario/55383/04(H1N2) 0756 A/Swine/Tennessee/24/77 (H1N1)
p=0.0000000000005653026 n1= 46 n2= 48 length=1302 differences= 44 split= 550 0046 A/Duck/Shantou/1042/00(H9N2) 0048 A/Duck/Shantou/1043/00(H9N2)
p=0.0000000000016234763 n1=384 n2=511 length=1231 differences= 105 split= 200 0384 A/Duck/Shantou/1881/00(H9N2) 0511 A/Duck/Hong Kong/Y439/97(H9N2)
p=0.0000000000024360053 n1=579 n2=581 length=2280 differences= 108 split= 600 0579 A/goose/Hong Kong/23/1978(H5N3) 0581 A/Tree sparrow/Henan/1/2004(H5N1)
p=0.0000000000448690774 n1= 92 n2=557 length=1196 differences= 37 split= 950 0092 A/swine/Korea/S452/2004(H9N2) 0557 A/chicken/Korea/S4/03(H9N2)
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