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PLoS Pathog . An outbreak of SARS-CoV-2 with high mortality in mink (Neovison vison) on multiple Utah farms

tetano

Editor, Senior Moderator
PLoS Pathog


. 2021 Nov 12;17(11):e1009952.
doi: 10.1371/journal.ppat.1009952. eCollection 2021 Nov.
An outbreak of SARS-CoV-2 with high mortality in mink (Neovison vison) on multiple Utah farms


Chrissy D Eckstrand[SUP] 1 [/SUP], Thomas J Baldwin[SUP] 2 [/SUP], Kerry A Rood[SUP] 3 [/SUP], Michael J Clayton[SUP] 2 [/SUP], Jason K Lott[SUP] 4 [/SUP], Rebecca M Wolking[SUP] 1 [/SUP], Daniel S Bradway[SUP] 1 [/SUP], Timothy Baszler[SUP] 1 [/SUP]



Affiliations

Abstract

The breadth of animal hosts that are susceptible to severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2) and may serve as reservoirs for continued viral transmission are not known entirely. In August 2020, an outbreak of SARS-CoV-2 occurred on five mink farms in Utah and was associated with high mink mortality (35-55% of adult mink) and rapid viral transmission between animals. The premise and clinical disease information, pathology, molecular characterization, and tissue distribution of virus within infected mink during the early phase of the outbreak are provided. Infection spread rapidly between independently housed animals and farms, and caused severe respiratory disease and death. Disease indicators were most notably sudden death, anorexia, and increased respiratory effort. Gross pathology examination revealed severe pulmonary congestion and edema. Microscopically there was pulmonary edema with moderate vasculitis, perivasculitis, and fibrinous interstitial pneumonia. Reverse transcriptase polymerase chain reaction (RT-PCR) of tissues collected at necropsy demonstrated the presence of SARS-CoV-2 viral RNA in multiple organs including nasal turbinates, lung, tracheobronchial lymph node, epithelial surfaces, and others. Localization of viral RNA by in situ hybridization revealed a more localized infection, particularly of the upper respiratory tract. Whole genome sequencing from multiple mink was consistent with published SARS-CoV-2 genomes with few polymorphisms. The Utah mink SARS-CoV-2 strains fell into Clade GH, which is unique among mink and other animal strains sequenced to date. While sharing the N501T mutation which is common in mink, the Utah strains did not share other spike RBD mutations Y453F and F486L found in nearly all mink from the United States. Mink in the outbreak reported herein had high levels of SARS-CoV-2 in the upper respiratory tract associated with symptomatic respiratory disease and death.
 
These mutations were identical to those found in the closest GenBank match MW474212:SARS-CoV-2/human/USA/WA-S3043/2020. Synonymous SNPs from this Farm A isolate included C1059T, C3037T, C6336T, G12795A, C14408T, C20930T, A23064C, A23403G, G25563T, C25936T, C28887T, were also identical to those of MW474212 from a human in Washington State.

The Utah mink SARS-CoV-2 strain is unique among mink and other animal strains sequenced to date. Identical strains found in Washington state humans may reflect zooanthroponosis, and to date there is no evidence that viruses adapted to mink will impact human SARS-CoV-2 evolution.

Farm workers move state to state in the US.
 
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