PB1-F2 sequences

gsgs · Jan 7, 2007

PB1-F2 from the 2811 complete PB1-Influenza-A-nucleotide-sequences available at genbank.
Those which occur 3 or less times for that species and serotype are
deleted to reduce the length of the table.

Code:

[FONT=fixedsys]
 
MEQEQGTPWTQSTEHTNIQKRGSGRQIQKLGHPNSTQLMDHYLRIMSQVDMHKQTVSWRLWPSLKNPTQGSLRTHALKQWKSFNKQGWTN}  H H3N2/,173
...................R.................................................V...................... H H3N2/,100
...................R...........................R.....................V...................... H H3N2/, 93
.................................................................................L.......... H H3N2/, 73
.............................................................L.............................. H H3N2/, 62
........................Q................................................................... H H3N2/, 60
...G....................Q..................K................................................ H H3N2/, 57
..........R........R.......................................P.........V...................... H H3N2/, 48
.....D....................T.........R......................P.L.............................. H H3N2/, 38
.....................................................................E...................... H H3N2/, 37
...................R..........................N......................V...........P..R....... H H3N2/, 34
.....D.Q.......I..........T.........R...................F..P.L.............................. H H3N2/, 31
.....D....................T.........R...................F..P.L...................L......I... H H3N2/, 21
....................K...Q................................................................... H H3N2/, 21
.....D....................T.........R....................................................... H H3N2/, 20
..........................................................................................L. H H3N2/, 18
.......................................................................................}.... H H3N2/, 16
.....D....................T.........R..............P....F..P.L...................L......I... H H3N2/, 15
.....D....................T.........R.............T.....F..P.L...T.I.............L......I... H H3N2/, 13
......................................................................Y..................... H H3N2/, 11
.....D........R.....K...Q.T.........R...................F..P.L.}.............R...L.S....I... H H3N2/, 10
.....D.....L...I....K.N.Q.T....R..L.R.....................K..L..R.......K.R...........E..D.. H H3N2/,  9
.....D..............K.....T.........R...................F..P.L..........K........L......I... H H3N2/,  9
.....D.................................................................................}.... H H3N2/,  9
........................Q........................................S.......................... H H3N2/,  9
.....D..............K.....T.........R...................F..P.L...................L......I... H H3N2/,  8
.....D.............R.................................................V...................... H H3N2/,  8
.....D.........I....K...Q.T....R..L.R.....................K..L..R.........R................. H H3N2/,  7
.....D.........I....K...Q.TR..ER..L.......................KQ.L..........K.RV..R..L.......D.. H H3N2/,  7
............I...........Q.........................................................S......... H H3N2/,  7
...............................P............................................................ H H3N2/,  7
.....D.........I....K...Q.T....R....R.........N.........F....H..R.........R................. H H3N2/,  6
.....D.........I....K...Q.T.R..R..L.............A.........KQ.L........F.K.R...R............. H H3N2/,  6
.....D....................T.............................F..P.L...................L......I... H H3N2/,  6
.....D....................T.........R........................L...........................S.. H H3N2/,  6
........................Q..............................................................L.... H H3N2/,  6
.......................................................................................L.... H H3N2/,  6
............................................................................S............... H H3N2/,  6
.....D.........I....K...Q.T.R..R..L.......................KQ.L..........K.R...R..........D.. H H3N2/,  5
.....D.........I...RK...Q.T....R..L.R.....................K..L..R.........R................. H H3N2/,  5
....................K...Q......R............................................................ H H3N2/,  5
.....D.........I....K...Q.T....R..L.......................KQ.L..........K.R...R..........D.. H H3N2/,  4
.....D.........I....K...Q.T....R....R.....................K..L..R.........R................. H H3N2/,  4
.....D...................................................................................... H H3N2/,  4
.....D....................T.........R....................................A.................. H H3N2/,  4
.....D....................T.........R..................................................}.... H H3N2/,  4
.....D....................T.........R............................S............RS............ H H3N2/,  4
........................Q............................................................R...... H H3N2/,  4
.....................................................................E..........R........... H H3N2/,  4
...G..........R.........Q..................K................................................ H H3N2/,  4
.....D.........I........Q.TR..ER..L.........T.N........A..KQ.L.......E..K.RV..R..L....E..... H H2N2/,  5
.....D..............K.....T.R....S..R........TN.........F..P.L........Y..I.......L......I... S H3N2/,  4
 
...G.D...IL.........K.N.Q.TLR.E.H.LI.S...F.KT.N..GTP..I.Y.KQ.L.....IPE..KIRV..R.R}.SR.E..... E H3N8/,  5
...........L...I.........................C...........R...L.......S...............LS......... A H3N8/,  5
 
............................................................................................ H H1N2/, 20
 
.G.......I...G.IST..EED.QK.P..E.R......G..QKT.N..A.P..I.Y}KQ.L..R..ILVF.K.LV....RL.S........ H H1N1/, 65
............................................................................................ H H1N1/, 62
....................G.....T.........R............V..................P.....R...R......HV}.... H H1N1/, 32
............................................................................................ H H1N1/, 15
......I..................................................................................... H H1N1/, 14
....................G.....T.........R............V........................R...R......HE..... H H1N1/, 13
............................................................................................ H H1N1/, 11
......................G..................................................................... H H1N1/,  7
...G.......L........................R.........................................R.......E..... H H1N1/,  7
...G.......................L........R.....................................R...R.......E..... H H1N1/,  6
...G................................R.....................................R...R.......E..... H H1N1/,  6
..R..D..............K.N...TR.........S...CP..............L.......S...E....R...R...S...E..... A H1N1/,  4
 
.....D....R....I.T....N.Q.T..PK.....R..GRC.I..NRAGT..R.AC.KQ.L....H.R.F.K.RV.....L.S..E.I... A H9N2/,  5
.........................................................................I.....}............ A H9N2/,  4
 
.....D.......G.I.T....N.Q.T.R.E.............TT..A.....I.C.KQ.L..........K..V..R..L.S..E.I... A H7N1/,  8
 
..R..D.........I.....EN.Q.T...ER..L....G......N.....R..A..KQ.L.......E..K.RV..R.RL..R....S.. A H6N2/,  6
...........................................................R.....S..R.............Y......... A H6N2/,  6
 
...G.D..................Q.T.R.E.....R..........P.G....I.Y.KQ.L..........K.RV..R..L....E.I... A H5N1/, 42
.G...............................................V.......................................... A H5N1/, 34
..........P................................................................................. H H5N1/, 24
.....................................................................E...................... A H5N1/, 11
.........................................................................I.................. A H5N1/, 11
...................................................................................S........ A H5N1/,  8
....................GE...................................................I.................. H H5N1/,  8
...............I......N..R.........I.....C.....R....R............S.................S........ A H5N1/,  6
............................................................................................ A H5N1/,  6
.........I............N.................R...M................................R.............. A H5N1/,  5
.G..R..................................G.........V.......................................... A H5N1/,  5
.........................................C.................................................. H H5N1/,  5
...............I....K.G......P......L......K.T.RA................S...D............SS.R...S.. H H5N1/,  4
.........I.............................G...........................................S........ H H5N1/,  4
..........P...R............................................................................. H H5N1/,  4
...............I......N..R.........I.....C.....R.................S.................S........ A H5N1/,  4
..........R.I..I.T.R..N....P.......I......P..T.RA.......C......S...................S........ A H5N1/,  4
.........I............N.................R....................................R.............. A H5N1/,  4
.........................................C.................................................. A H5N1/,  4
 


PB1-F2 positions 16-28

1918 : ISTQKREDGQQTP
H1N1 : .....E....KI.
H2N2 : .NI...GS....R
H3N2 : TNI...GS.R.IQ
H5N1 : TNI...GS....Q
Dairi: TNI..GGS....Q
Karo : TNI..GES....Q

H9N2 : .N....GN....Q
H7N1 : .N....GN....Q
H6N2 : .NI....N....Q



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PB1-F2 sequences

gsgs

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