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Neurological Manifestations as marker of H1N1 virulence?

Re: Neurological Manifestations as marker of H1N1 virulence?

Also mentioned in this recent thread:
http://www.flutrackers.com/forum/newreply.php?do=newreply&noquote=1&p=252948

IOH writes about similar outcomes from 1889 flu and impact in Italy.

Is this related to additional aminio acids in the cleavage site, allowing the virus to be cleaved in spinal fluid enzymes?

Didn't the surviving uncle in the H5N1 Karo cluster have encephalitis? If so, what's the common factor?

.
 
Re: Neurological Manifestations as marker of H1N1 virulence?

It seems to just come with viruses sometimes
---------------------------------------------

Encephalitis and encephalopathy associated with an influenza epidemic in Japan.

During the winter of 1998-1999, there was an outbreak of encephalitis/encephalopathy in Japan that appeared to be associated with influenza. We conducted a national survey of the prevalence and clinical features of disease and the associated outcomes and prognostic factors related to this outbreak. A total of 202 cases were analyzed, of which 148 were diagnosed as influenza-associated encephalitis/encephalopathy on the basis of virologic analysis. Of the 148 cases studied, 130 (87.8%) were type A influenza and 17 were type B. Encephalitis/encephalopathy developed mainly in children age <5 years, either on the day that influenza signs appeared or on the next day. The major signs included altered consciousness or loss of consciousness, convulsions, cough, and vomiting. In many patients, multiple-organ failure developed, and rates of mortality (31.8%) and disability (27.7%) were high. Thrombocytopenia and severely
elevated transaminase levels were factors associated with a poor prognosis. Thus, influenza-associated encephalitis/encephalopathy progressed rapidly and was associated with poor outcomes.

http://www.ncbi.nlm.nih.gov/pubmed/12173123
 
Re: Neurological Manifestations as marker of H1N1 virulence?

Didn't the surviving uncle in the H5N1 Karo cluster have encephalitis? If so, what's the common factor?

I just figured out why the neurological symptoms caught my attention. Dr. Niman was following it with H5N1, and he must be looking for it with the recent PB2 E627K change:

Neurological Complications in H5N1 Patient in Medan Sumatra

Recombinomics Commentary
June 15, 2006

After being stated recovered from bird flu, JG must reside in the hospital and might not come home. He the diagnosis suffered the infection in and around the brain. If being forced to come home, JG could be suddenly unconscious.

"There were the infection and the clump of pus in and around his brain," said the Co-ordinator Tim the Handling of Adam's Hospital Bird Flu the Medan Owner, Adlin Adnan in Medan, on Thursday morning (15/6). This infection was known after being done pemindaian against JG. "The temperature of his body also was not yet stable," said Adlin.

This hospital, said Adlin, will coordinate with the Hospital of Sulianti Saroso Jakarta to memperlajari the patient's relations recovered bird flu and the brain infection. According to Adlin, the case that was suffered by JG was classified as rare and first happened in Sumatra.

The above translation indicates that the sole survivor of the H5N1 bird flu cluster near Medan, north Sumatra, has neurological involvement. Neurological involvement of H5N1 has been associated with PB2 E627K. This polymorphism is found in all human isolates that are H1, H2, or H3. PB2 in H5N1 has been associated with neurological problems in mammals. Mice infected with H5N1 have neurological involvement and E627K has been found in brain isolates. Similarly, tigers in Thailand infected with H5N1 have neurological symptoms and E627K. E627K has also been found in H5N1 from cats and dogs. Experimental ferrets infected with H5N1 with E627K have hind leg paralysis.

PB2 E627K is also associated with increased activity at lower temperatures (33 C), which would increase levels in the nose and throat of humans. Declan Butler reported that cases in northern Sumatra had increased levels of H5N1 in their nose and throat, suggesting the H5N1 from these patients had E627K. This change was found in H5N1 (A/Indonesia/6/2005) from the second confirmed case in Indonesia (see phylogenetic tree), suggesting E627K is also in the north Sumatra cases. Isolates from these cases also have an H5N1 wild type cleavage site, RERRRKKR, which was also present in the above examples of neurological involvement.

Neurological involvement of H5N1 is cause for concern. The effectiveness of neuraminidase inhibitors such as Tamiflu is unclear. In addition, the isolates from Sumatra are amantadine resistant, further limiting treatment options. This complication creates additional concerns linked to an H5N1 pandemic, which could significantly impact treatment centers and anti-viral stockpiles.
 
Re: Neurological Manifestations as marker of H1N1 virulence?

J Virol. 2008 May; 82(9): 4544?4553.
Published online 2008 February 27. doi: 10.1128/JVI.02642-07.

NP, PB1, and PB2 Viral Genes Contribute to Altered Replication of H5N1 Avian Influenza Viruses in Chickens

Abstract

The virulence determinants for highly pathogenic avian influenza viruses (AIVs) are considered multigenic, although the best characterized virulence factor is the hemagglutinin (HA) cleavage site. The capability of influenza viruses to reassort gene segments is one potential way for new viruses to emerge with different virulence characteristics. To evaluate the role of other gene segments in virulence, we used reverse genetics to generate two H5N1 recombinant viruses with differing pathogenicity in chickens. Single-gene reassortants were used to determine which viral genes contribute to the altered virulence. Exchange of the PB1, PB2, and NP genes impacted replication of the reassortant viruses while also affecting the expression of specific host genes. Disruption of the parental virus' functional polymerase complexes by exchanging PB1 or PB2 genes decreased viral replication in tissues and consequently the pathogenicity of the viruses. In contrast, exchanging the NP gene greatly increased viral replication and expanded tissue tropism, thus resulting in decreased mean death times. Infection with the NP reassortant virus also resulted in the upregulation of gamma interferon and inducible nitric oxide synthase gene expression. In addition to the impact of PB1, PB2, and NP on viral replication, the HA, NS, and M genes also contributed to the pathogenesis of the reassortant viruses. While the pathogenesis of AIVs in chickens is clearly dependent on the interaction of multiple gene products, we have shown that single-gene reassortment events are sufficient to alter the virulence of AIVs in chickens.

...

RESULTS

Pathogenicity of the H5N1 recombinant viruses.

The two-parent recombinant H5N1 viruses used in this study were derived from A/Chicken/Indonesia/7/03 and A/Egret/Hong Kong/757.2/02 using reverse genetics. Table 1 shows the comparison of the amino acid sequences of the resulting recombinant viruses, rIndo and rEgret. The recombinant viruses that we generated have a PA gene with the same amino acid sequence, but the remaining viral genes have amino acid sequence differences (see Table S1 in the supplemental material). When administered to chickens IN, the rIndo virus resulted in a mortality of 6 of 8 and an MDT of 6.1 days, while the rEgret virus resulted in a higher mortality (8 of 8) and a shorter MDT (3.25 days) (Table 2). MDTs (Table 2) and survival rates were significantly different (P < 0.05) upon infection with rIndo and rEgret compared to the control group and also to each other (Fig. 1A
FIG. 1.). Chickens inoculated with rEgret presented histological lesions in tissues, which included diffuse interstitial pneumonia in the lung, moderate tracheitis, multifocal splenic necrosis, moderate cardiac degeneration, and multifocal nonsupurative encephalitis among others
 
Re: Neurological Manifestations as marker of H1N1 virulence?

Yes, the appearance of E627K in Pandemic H1N1 in Shanghai, and neurological manifestations is definitely cause for concern. H5N1 with E627K has been isolated from mouse brain and associated with hind leg paralysis in experimentally infected ferrets.

The fatal case in Buffalo was "dizzy" and had leg "problems".

The first fatality in the Philippines was "restless" before she died (which was rapid - sent to work on Wednesday and was dead on Friday).

Queens assistant principal was delerious prior to death.
 
Re: Neurological Manifestations as marker of H1N1 virulence?

deleted-duplicate post
 
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Re: Neurological Manifestations as marker of H1N1 virulence?

Yes, the appearance of E627K in Pandemic H1N1 in Shanghai, and neurological manifestations is definitely cause for concern. H5N1 with E627K has been isolated from mouse brain and associated with hind leg paralysis in experimentally infected ferrets.

The fatal case in Buffalo was "dizzy" and had leg "problems".

The first fatality in the Philippines was "restless" before she died (which was rapid - sent to work on Wednesday and was dead on Friday).

Queens assistant principal was delirious prior to death.

Thanks Dr. Niman.
 
Re: Neurological Manifestations as marker of H1N1 virulence?

eMedicine Specialties > Neurology > Neurological Infections
Viral Encephalitis
Updated: Jan 11, 2007

...

The annual incidence of viral encephalitis is most likely underestimated, especially in developing countries, because of problems with pathogen detection. Japanese B encephalitis affects at least 50,000 individuals per year.

In a recent study from Finland, the incidence of viral encephalitis in adults was 1.4 cases per 100,000 persons per year. HSV was identified most often as the cause (16%), followed by varicella-zoster (5%), mumps (4%), and influenza A viruses (4%).

...

History

* Viral encephalitis is marked by acute onset of a febrile illness.
* Patients with viral encephalitis generally experience signs and symptoms of leptomeningeal irritation (eg, headache, fever, neck stiffness).
* Patients with viral encephalitis also develop focal neurological signs; seizures; and alteration of consciousness, starting with lethargy and progressing to confusion, stupor, and coma.
* Behavioral and speech disturbances are common.
* Abnormal movements can be seen but are rare.
* Involvement of the hypothalamic/pituitary axis can lead to hyperthermia or poikilothermia.
* Specific clues taken from the patient's history depend on the viral etiology. Clinical findings reflect disease progression according to viral tropism for different CNS cell types. Particular clinical manifestations of different encephalitides can be reviewed in Tables 2-4. Some important clinical presentations are as follows:
o Atypical presentations include a reversible frontal lobe and limbic syndrome without disturbances of consciousness or motor function. These presentations have been described in children with influenza virus infection.
o HSV-1 encephalitis and HSV-2 encephalitis have subacute forms, presenting with psychiatric syndrome and anterior opercular syndrome, known as benign recurrent meningitis. HSV-1 encephalitis may produce a brainstem encephalitis, and HSV-2 encephalitis may produce a myelitis.
o West Nile virus infection is usually asymptomatic in areas of endemic disease. In symptomatic individuals, an influenzalike illness occurs after incubation of 3-15 days; CNS involvement occurs in fewer than 15% of cases. Severe neurological infection is more common when the virus is introduced in an area of nonendemic disease. In 1999, during the New York City outbreak, 62 patients developed encephalitis, and 7 died (a case fatality rate of 12%, with all deaths occurring in older patients). Axonal neuropathy, demyelinating polyneuropathy similar to that in Guillain-Barr? syndrome, encephalitis with and without muscle weakness, and aseptic meningitis were described.
o Japanese B encephalitis typically affects children and young adults. Older adults are affected in epidemics. The clinical presentation includes a nonspecific prodrome and frequent seizures.
o Dengue fever classically presents with a severe influenzalike illness or dengue hemorrhagic fever. Less commonly, dengue fever can lead to encephalitis or encephalopathy, transverse myelitis, and mononeuropathy or polyneuropathy similar to that in Guillain-Barr? syndrome. The hemorrhagic form may also cause hepatic failure leading to a Reye syndrome?like illness.
o Enteroviral encephalitis is usually associated with a good prognosis. However, enterovirus 71 has a high mortality rate and can present with herpangina or enteroviral hand, foot, and mouth disease. Complications include myocarditis and acute flaccid paralysis. Enterovirus 71 can cause a chronic meningoencephalitis in patients who are immunocompromised.
o Mumps encephalitis typically starts 3-10 days after parotitis and usually resolves without sequelae, except for occasional hydrocephalus due to ependymal cell involvement. Measles does not usually cause acute encephalitis.
o Rabies usually incubates 20-60 days but is capable of incubating for years. Infection does not occur in all humans bitten by an infected animal but is uniformly fatal when clinical disease develops. After a prodrome of fever, headache, malaise, seizures, and behavioral abnormalities, hydrophobia and aerophobia supervene. Coma and death occur in one to several weeks. Once symptoms start, treatment is ineffective.
o Recently in southern Vietnam, a viral encephalitis caused by avian influenza A (H5N1) and not involving the respiratory tract was diagnosed in 2 siblings: a 4-year-old boy, who presented with severe diarrhea, seizures, coma, and death and his sister. His CSF only revealed high protein, but H5N1 was isolated from CSF, fecal, throat, and serum specimens.
 
Re: Neurological Manifestations as marker of H1N1 virulence?

Here's something hopeful. It appears that neurological manifestations of influenza viruses may be due to inflammatory cytokines. If so, Dr. Fedson's theories regarding Confronting the next influenza pandemic with anti-inflammatory and immunomodulatory agents may apply:

J Med Invest. 2003 Feb;50(1-2):1-8.
Related Articles, Links

Pathologic mechanisms of influenza encephalitis with an abnormal expression of inflammatory cytokines and accumulation of mini-plasmin.

Yao D, Kuwajima M, Kido H.

Division of Enzyme Chemistry, Institute for Enzyme Research, The University of Tokushima, Tokushima, Japan.

The pathogenesis of influenza encephalopathy or encephalitis is poorly understood. This review summarizes our recent studies of the roles played by inflammatory cytokines, inducible nitric oxide synthase (iNOS), adhesion molecules and mini-plasmin in influenza encephalitis. After the intranasal infection of newborn mice with the non-neurotropic strain of influenza A virus (IAV) Aichi/2/68/H3N2, encephalitis and severe brain edema were observed within 3-5 days. IAV-RNA and abnormalities in the blood-brain barrier permeability were detected in association with an increase in the mRNA expressions of endothelin-1, iNOS, and tumor necrosis factor-alpha. Furthermore, the accumulation in the brain capillaries of mini-plasmin, which proteolytically induces the viral envelope fusion activity and allows the virus to enter the cells, changes the brain from non-susceptible to susceptible to non-neurotropic IAV multiplication. The accumulation of mini-plasmin was markedly greater in newborn mice with an impaired mitochondrial fatty acid metabolism. These inflammatory mediators and the accumulation of mini-plasmin in the brain may play an important role in the onset and progression of LAV encephalitis.

No To Hattatsu. 2000 Mar;32(2):156-62.Links
[Brain thermo-pooling is the major problem in pediatric influenza encephalitis]
[Article in Japanese]

Hayashi N.

Department of Emergency and Critical Care Medicine, Nihon University, Tokyo.

The prognosis of pediatric encephalitides, such as infantile influenza encephalitis, is still poor because of the rapid progression, severe brain edema, selective bilateral basal ganglia necrosis, and a poor immune function, the mechanism of which is still unknown. Especially, little is known about virus es in CSF and brain tissue with influenza encephalitis, which hampers successful treatment of this condition. Recently, hypothermia treatment has attracted attention as the management of infantile influenza encephalitis to prevent severe brain edema. Recent clinical studies have revealed brain thermo-pooling (elevation of brain tissue temperature) with damage of blood-brain barrier (BBB). We then studied brain injury mechanism after severe brain injuries, cerebral strokes, reperfusion after shock, and high fever with lower cerebral perfusion pressure in our ICU. The brain thermo-pooling phenomenon results from body temperature higher than 38 degrees C, systolic blood temperature lower than 90-100 mmHg, and cerebral perfusion pressure (CPP) lower than 70 mmHg that hinders washout of brain tissue temperature by cerebral blood flow. We have recorded of brain tissue temperature of 40-44 degrees C in various brain injured patients. Some pathophysiological changes in infantile influenza encephalitis may be explained on the basis of this brain thermo-pooling phenomenon. In systemic infection, it causes severe brain edema by activation of cytokines and destruction of BBB, bilateral basal ganglia necrosis by acute severe brain hypoxia, resulting in poor prognosis without control of brain temperature. In other words, brain thermo-pooling, is the major target of treatment for infantile influenza encephalitis. In this paper, new concepts of the brain injury mechanism and methods of brain hypothermia treatment of pediatric influenza encephalitis are presented.
 
Re: Neurological Manifestations as marker of H1N1 virulence?

When H5N1 made it's first inroad into eastern Europe, remember the geese that ran around in circles, then fell over dead? That was prior (I think) to it showing up in Turkey, and the Russian scientists said that neurological mutation made it more deadly to all humanity. The geese were in either Odessa or Astrakhan areas.

WHY would 627K do that? Is the following the method:

it causes severe brain edema by activation of cytokines and destruction of BBB, bilateral basal ganglia necrosis by acute severe brain hypoxia, resulting in poor prognosis

Why wouldn't this happen with all influenza with 627K?

.
 
Re: Neurological Manifestations as marker of H1N1 virulence?

........Why wouldn't this happen with all influenza with 627K?

.
From your #4 above:

these cases also have an H5N1 wild type cleavage site, RERRRKKR, which was also present in the above examples of neurological involvement.

Can we really rule out the cleavage site? Since H5N1 experiments that concluded with comments about 627K used the polybasic cleavage site, perhaps the expanded clevage potential was a factor.

.
 
Re: Neurological Manifestations as marker of H1N1 virulence?

From your #4 above:

these cases also have an H5N1 wild type cleavage site, RERRRKKR, which was also present in the above examples of neurological involvement.

Can we really rule out the cleavage site? Since H5N1 experiments that concluded with comments about 627K used the polybasic cleavage site, perhaps the expanded clevage potential was a factor.
.
I don't generally follow the genetics, but might the study linked in post #7 help?
 
Re: Neurological Manifestations as marker of H1N1 virulence?

Dr. Niman stated today that PB2 E627K is present in seasonal influenza A. As asked above, is there an explanation for neurological manifestations with PB2 E627K in some strains but not necessarily seasonal flu with PB2 E627K?

Pandemic H1N1 Cluster in Buffalo New York Raises Concerns
Recombinomics Commentary 12:44
June 22, 2009

...

One such change that could increase lethality is PB2 E627K. This polymorphism is present in seasonal influenza A, including the 1918 pandemic strain. It allows for optimal replication at lower temperatures, which may lead to a more transmissible and lethal Pandemic strain. This change has been reported for an isolate from Shanghai from a patient (22F) who recovered. The collection date, location, age and gender, suggests that the isolate came from a Chinese national who was a student in the US and flew to Shanghai on a flight that originated in New York with a lay-over in Hong Kong. Thus, the virus could have originated in New York, Hong Kong, or Shanghai, since the student developed symptoms shortly after arriving in Shanghai. The sequencers in China promptly released full sequences on all eight gene segments, and sequenced a clone to confirm that the E627K was not a sequencing error. The sequence of the clone exactly matched the original sequence.

However, this change may not offer much advantage at this time of the year in the northern hemisphere, but the change could appear in the southern hemisphere or could signal a change that is more widespread and circulating in the Hong Kong area. In any event, the presence of E627K in pandemic H1N1 strongly suggests that it will emerge in the fall, which is cause for concern.
 
Re: Neurological Manifestations as marker of H1N1 virulence?

I don't generally follow the genetics, but might the study linked in post #7 help?

Looking at their table #1 - genetic differences between the HK Egret and the Indo chicken, there is a long list of differences. But 627 is not even listed.

From the DISCUSSION:

(1st paragraph)

The rIndo and rEgret viruses, although having a high sequence similarity (>91%) for all eight gene segments, had a marked difference in virulence levels in chickens. Using reverse genetics, a series of variant viruses differing by a single gene segment was created in order to explore the contribution of individual viral genes to viral pathogenesis in chickens. Unexpectedly, the reassortment of the NP gene resulted in the biggest differences in virulence and replication. Some increase in pathogenicity was seen with the exchange of the HA, NS, and M gene segments, while the PB1 and PB2 reassortants had impaired replication resulting in low virulence. Alterations in host gene expression in response to infection with the reassortant viruses suggest that the viruses use different mechanisms to evade host responses.

Last paragraph...
In summary, the pathogenicity of AIVs is clearly due to a polygenic effect, and in this study, single-gene changes led to restriction or increased replication of AIVs in chickens. Reassortment events can result in a number of different gene combinations; however, we, and others, have shown that all possible combinations of genes in reassortant viruses are not necessarily viable. From the remaining viable gene reassortants, we were able to determine the effects of single-gene changes on the replication and pathogenesis of AIVs in chickens. While the precise role of chicken immune response factors is not clear, changes in the host gene expression of several genes involved in immunity are influenced by infection with the reassortant viruses and may be contributing factors in the pathogenicity of AIVs in chickens. Based on the results obtained in this study, the next step is to investigate the role of individual amino acids in each of the genes shown to affect AIV pathogenicity, as well as to continue exploring the effect of certain gene combinations.
.

i don't think it's conclusive for any particular position.

.
 
Re: Neurological Manifestations as marker of H1N1 virulence?

St Michael said:
Dr. Niman stated today that PB2 E627K is present in seasonal influenza A. As asked above, is there an explanation for neurological manifestations with PB2 E627K in some strains but not necessarily seasonal flu with PB2 E627K?

The studies are admittedly missing something.

My gut feeling is starting to be that maybe there should be less looking at individual genes in trying to figure out why this circulating strain is doing whatever it's doing; and more looking at obvious conditions, including host immune status.

Considering that prior to this current pandemic, much relevent literature contained innumerable "we don't know" or "it needs more study" statements - we no longer have the luxury of time to solve this puzzle by studying genes. There may be some answers in obvious conditions that are being overlooked.

Studying transmission may have faster results and that is what we need now. If IOH's referenced cases from Italy repeat themselves, as he says, the impact on the economy and society will be enormous and must be prevented. Concentrating on stopping transmission and improving immunity may yield more results. When a building is on fire, which do you do first - send in the fire marshall (while it's still burning) to determine the cause or let the firemen put it out? I think we need more firemen, water, and hoses.

.
 
Last edited:
Re: Neurological Manifestations as marker of H1N1 virulence?

Yes, the appearance of E627K in Pandemic H1N1 in Shanghai, and neurological manifestations is definitely cause for concern. H5N1 with E627K has been isolated from mouse brain and associated with hind leg paralysis in experimentally infected ferrets.

The fatal case in Buffalo was "dizzy" and had leg "problems".

The first fatality in the Philippines was "restless" before she died (which was rapid - sent to work on Wednesday and was dead on Friday).

Queens assistant principal was delerious prior to death.

www.recombinomics.com said:
In any event, the presence of E627K in pandemic H1N1 strongly suggests that it will emerge in the fall, which is cause for concern.

Sorry - been reading the thread - trying to make sense of words bigger than my normal vocabulary, plus I am tired. Here's my summary - please let me know if this is correct.

* The E627K acquisition has occured in at least one documented instance
* The E627K acquisition will lead to greater spread, especially in Fall
* The E627K acquisition is associated to some degree with Neorological Manifestations.
* Neorological Manifestations are associated with Cytokine Storm.

* Therefore E627K is associated with Cytokine Storm, which is bad news for the entire organ system (brain included) of the human body.

Do I have this correct?
 
Re: Neurological Manifestations as marker of H1N1 virulence?

* The E627K acquisition has occured in at least one documented instance
* The E627K acquisition will lead to greater spread, especially in Fall
* The E627K acquisition is associated to some degree with Neorological Manifestations.
* Neorological Manifestations are associated with Cytokine Storm.

* Therefore E627K is associated with Cytokine Storm, which is bad news for the entire organ system (brain included) of the human body.

Do I have this correct?

According to my (non-expert ) understanding....

#1 & #2 - yes
#3 - maybe
#4 - probably not
#5 - we'd be better off without 627K :)

.
 
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