tetano
Editor, Senior Moderator
Nucleic Acids Res. 2015 May 4. pii: gkv417. [Epub ahead of print]
[h=1]MapMyFlu: visualizing spatio-temporal relationships between related influenza sequences.[/h] Nolte N[SUP]1[/SUP], Kurzawa N[SUP]1[/SUP], Eils R[SUP]1[/SUP], Herrmann C[SUP]2[/SUP].
[h=3]Author information[/h]
[h=3]Abstract[/h] Understanding the molecular dynamics of viral spreading is crucial for anticipating the epidemiological implications of disease outbreaks. In the case of influenza, reassortments or point mutations affect the adaption to new hosts or resistance to anti-viral drugs and can determine whether a new strain will result in a pandemic infection or a less severe progression. To this end, tools integrating molecular information with epidemiological parameters are important to understand how molecular characteristics reflect in the infection dynamics. We present a new web tool, MapMyFlu, which allows to spatially and temporally display influenza viruses related to a query sequence on a Google Map based on BLAST results against the NCBI Influenza Database. Temporal and geographical trends appear clearly and may help in reconstructing the evolutionary history of a particular sequence. The tool is accessible through a web server, hence without the need for local installation. The website has an intuitive design and provides an easy-to-use service, and is available at http://mapmyflu.ipmb.uni-heidelberg.de.
? The Author(s) 2015. Published by Oxford University Press on behalf of Nucleic Acids Research.
PMID: 25940623 [PubMed - as supplied by publisher] Free full text
[h=1]MapMyFlu: visualizing spatio-temporal relationships between related influenza sequences.[/h] Nolte N[SUP]1[/SUP], Kurzawa N[SUP]1[/SUP], Eils R[SUP]1[/SUP], Herrmann C[SUP]2[/SUP].
[h=3]Author information[/h]
[h=3]Abstract[/h] Understanding the molecular dynamics of viral spreading is crucial for anticipating the epidemiological implications of disease outbreaks. In the case of influenza, reassortments or point mutations affect the adaption to new hosts or resistance to anti-viral drugs and can determine whether a new strain will result in a pandemic infection or a less severe progression. To this end, tools integrating molecular information with epidemiological parameters are important to understand how molecular characteristics reflect in the infection dynamics. We present a new web tool, MapMyFlu, which allows to spatially and temporally display influenza viruses related to a query sequence on a Google Map based on BLAST results against the NCBI Influenza Database. Temporal and geographical trends appear clearly and may help in reconstructing the evolutionary history of a particular sequence. The tool is accessible through a web server, hence without the need for local installation. The website has an intuitive design and provides an easy-to-use service, and is available at http://mapmyflu.ipmb.uni-heidelberg.de.
? The Author(s) 2015. Published by Oxford University Press on behalf of Nucleic Acids Research.
PMID: 25940623 [PubMed - as supplied by publisher] Free full text