tetano
Editor, Senior Moderator
J Korean Med Sci
. 2021 Jan 25;36(4):e38.
doi: 10.3346/jkms.2021.36.e38.
Epidemiologic Linkage of COVID-19 Outbreaks at Two University-affiliated Hospitals in the Seoul Metropolitan Area in March 2020
Kuenyoul Park[SUP] #[/SUP][SUP] 1 [/SUP], Jaewoong Lee[SUP] #[/SUP][SUP] 2 [/SUP], Kihyun Lee[SUP] 3 [/SUP], Jiwon Jung[SUP] 4 [/SUP], Sung Han Kim[SUP] 4 [/SUP], Jina Lee[SUP] 5 [/SUP], Mauricio Chalita[SUP] 3 [/SUP], Seok Hwan Yoon[SUP] 3 [/SUP], Jongsik Chun[SUP] 3 6 [/SUP], Kyu Hwa Hur[SUP] 1 [/SUP], Heungsup Sung[SUP] 7 [/SUP], Mi Na Kim[SUP] 8 [/SUP], Hae Kyung Lee[SUP] 2 [/SUP]
Affiliations
Abstract
Background: Coronavirus disease 2019 (COVID-19) outbreaks emerged at two university-affiliated hospitals in Seoul (hospital A) and Uijeongbu City (hospital S) in the metropolitan Seoul area in March 2020. The aim of this study was to investigate epidemiological links between the outbreaks using whole genome sequencing (WGS) of severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2).
Methods: Fifteen patients were enrolled in the study, including four non-outbreak (A1-A4) and three outbreak cases (A5-A7) in hospital A and eight cases (S1-S8) in hospital S. Patients' hospital stays, COVID-19 symptoms, and transfer history were reviewed. RNA samples were submitted for WGS and genome-wide single nucleotide variants and phylogenetic relationships were analyzed.
Results: The index patient (A5) in hospital A was transferred from hospital S on 26 March. Patients A6 and A7 were the family caregiver and sister, respectively, of the patient who shared a room with A5 for 4 days. Prior to transfer, A5 was at the next bed to S8 in the emergency room on 25 March. Patient S6, a professional caregiver, took care of the patient in the room next to S8's room for 5 days until 22 March and then S5 for another 3 days. WGS revealed that SARS-CoV-2 in A2, A3, and A4 belong to clades V/B.2, S/A, and G/B.1, respectively, whereas that of A5-A7 and S1-S5 are of the V/B.2.1 clade and closely clustered. In particular, SARS-CoV-2 in patients A5 and S5 showed perfect identity.
Conclusion: WGS is a useful tool to understand epidemiology of SARS-CoV-2. It is the first study to elucidate the role of patient transfer and caregivers as links of nosocomial outbreaks of COVID-19 in multiple hospitals.
Keywords: COVID-19; Clade; Lineage; Nosocomial Outbreak; SARS-CoV-2; Whole Genome Sequencing.
. 2021 Jan 25;36(4):e38.
doi: 10.3346/jkms.2021.36.e38.
Epidemiologic Linkage of COVID-19 Outbreaks at Two University-affiliated Hospitals in the Seoul Metropolitan Area in March 2020
Kuenyoul Park[SUP] #[/SUP][SUP] 1 [/SUP], Jaewoong Lee[SUP] #[/SUP][SUP] 2 [/SUP], Kihyun Lee[SUP] 3 [/SUP], Jiwon Jung[SUP] 4 [/SUP], Sung Han Kim[SUP] 4 [/SUP], Jina Lee[SUP] 5 [/SUP], Mauricio Chalita[SUP] 3 [/SUP], Seok Hwan Yoon[SUP] 3 [/SUP], Jongsik Chun[SUP] 3 6 [/SUP], Kyu Hwa Hur[SUP] 1 [/SUP], Heungsup Sung[SUP] 7 [/SUP], Mi Na Kim[SUP] 8 [/SUP], Hae Kyung Lee[SUP] 2 [/SUP]
Affiliations
- PMID: 33496089
- DOI: 10.3346/jkms.2021.36.e38
Abstract
Background: Coronavirus disease 2019 (COVID-19) outbreaks emerged at two university-affiliated hospitals in Seoul (hospital A) and Uijeongbu City (hospital S) in the metropolitan Seoul area in March 2020. The aim of this study was to investigate epidemiological links between the outbreaks using whole genome sequencing (WGS) of severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2).
Methods: Fifteen patients were enrolled in the study, including four non-outbreak (A1-A4) and three outbreak cases (A5-A7) in hospital A and eight cases (S1-S8) in hospital S. Patients' hospital stays, COVID-19 symptoms, and transfer history were reviewed. RNA samples were submitted for WGS and genome-wide single nucleotide variants and phylogenetic relationships were analyzed.
Results: The index patient (A5) in hospital A was transferred from hospital S on 26 March. Patients A6 and A7 were the family caregiver and sister, respectively, of the patient who shared a room with A5 for 4 days. Prior to transfer, A5 was at the next bed to S8 in the emergency room on 25 March. Patient S6, a professional caregiver, took care of the patient in the room next to S8's room for 5 days until 22 March and then S5 for another 3 days. WGS revealed that SARS-CoV-2 in A2, A3, and A4 belong to clades V/B.2, S/A, and G/B.1, respectively, whereas that of A5-A7 and S1-S5 are of the V/B.2.1 clade and closely clustered. In particular, SARS-CoV-2 in patients A5 and S5 showed perfect identity.
Conclusion: WGS is a useful tool to understand epidemiology of SARS-CoV-2. It is the first study to elucidate the role of patient transfer and caregivers as links of nosocomial outbreaks of COVID-19 in multiple hospitals.
Keywords: COVID-19; Clade; Lineage; Nosocomial Outbreak; SARS-CoV-2; Whole Genome Sequencing.