India as the possible source of worldwide seasonal flu waves

gsgs · Feb 2, 2014

==================================================================================
list of possible India source strains with original mutations
B/Kol/2044/2008/10/10 , T218C(4),A1023G(4),A1161G(4)
B/Kol/1373/2008/01/31 , A195G(4),G481A(4),A759G(4),A840G(4)
HAs from India, summer 2013, have nucleotide mutations: A430G,A472G,(T518C),G1087A,G1080A
these 2 viruses from July 2007 : A/Kolkata/975/2007/07(H1N1) , A/Kolkata/985/2007/07(H1N1) have C439T(8)
--only segments 2(partial) and 8 are given) his mutation appears together with H274Y(6),
--the tamiflu resistance that appeared in H1N1 in Europe in 2008.
A/India/8910/2010/05/08(H1N1) --> UK,Europe 2010/11 , G189A(4),C195T(4),G605C(4),T1056C(4),G1171A(4),
--G1403A(4),T720C(6),G721A(6),C1016T(6),C1107A(6),G1131A(6),G238A(7)
---A/India/NIV29386/2010/06/02(H1N1) , A/India/NIV30784/2010/07/16

===================================================================================

here I will collect the evidence about new successful mutations
fist seen in India.
I had some posts before ... but scattered.
------------------------------------------------------

A/Kolkata/43/2005/10/(H3N2) has 197,447,467,930,954 first from the index-USA/2007
next : A/Mex2640,2005/11/22
-------------------------------------------------------

gsgs · Feb 2, 2014

Re: India as the possible source of worlwide seasonal waves

Re: India as the possible source of worlwide seasonal waves

Genbank just released ~700 human partial sequences from India,
2003-2012 , I haven't yet analysed them, you need to dig out
all the ancient strains ...

H3N2,HA

Code:

                                                                  000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001111111111111111111111111111111111111111111111111 
                                                                  000000000000000000011111111111111111122222222222222222233333333333444444444444444444444444445555555555555555555555556666666666666666666666777777777777777788888888888888999999999999999999990000000000000111111111111112222222334455555555666 
                                                                  033456667777888999900112234557788999900111234445677899912256889999123333334455556667777788890111112222333444455666790001122234444456888999111122222333666901133567888889011111122355556788990001114558889000123347788990013579590811224567347 
                                                                  919850152578147036989470146691712016715069223469139515783845273689940126894701680572378902321126891248178367909457045694535600356820247069024512479346258571307572124790325678904034899535890591474367892678080191328570520456373528475708721 
-codon-position--------------------------------------------------- 1  1 12  2         1   122    121212 1    1 1 1     1  21 21   2 2112 1 1   1 21 212 12 2   12 2 2 2   1  1 11 1   2  2 212 11 1 1 1     21 11211 121     1 2   22 2212   12 12  2 12  212 1 1      12  2 1  2  1   1  2      22         21  
---Index----------------------------------------------------------TCGTCCGACCCGAGGCTGCACCAGATATTGTAGACGAAGTTGCGACATGGTCTAACATGCGCCCCAGAACTGCAACAACCGCTAGTAATACTGACCTAAATACATCGATAAAAATTGTGATTTTGGTAGAACATACTCCAAGAAACCAGAAGAGTAGGGACGATCATGTTCAATGAACACGCATAACAAGCATATAGGTGTTCAGAGACGTTGAAGGCGATTTAAACAATGGAACTA 
   1 >CY090532,A/India/Dib0622567/2006,2006/06/27,India,H3N2      ----..............T.........C.......G....................C.................T......A..................G..............................................................A.GCG......G.T.T........C.TG..-------------------------------------------      124     64 ,     23     17       1:>CY090532,A/India/Dib0622567/2006,2006/06/27,India,H3N2      
   2 >CY090531,A/India/Dib0622566/2006,2006/06/06,India,H3N2      ----..............T.........C.......G....................C.....T...........T......A..................G.....G.....................................................................T.T..............-------------------------------------------      114     58 ,     13     11       2:>CY090531,A/India/Dib0622566/2006,2006/06/06,India,H3N2      
   3 >CY090541,A/India/P059124/2005,2005/10/03,India,H3N2         ----.....A........A.................G......................................T......A............A...........G.....G.......................................A.......................T.T..............-------------------------------------------      112     58 ,     11     11       3:>CY090541,A/India/P059124/2005,2005/10/03,India,H3N2         
   4 >A/Wisconsin/67/2005/08/                                     ....................................G......................................T....T.A............A....................T........................A...................................T.T...............C..........T..A....G.....C..G..T....AC....       19     18 ,     19     18       4:>A/Wisconsin/67/2005/08/                                     
   5 >CY090507,A/India/D058688/2005,2005/03/09,India,H3N2         ----................................G..................................C...T......A..............................................................................................T.T..............-------------------------------------------      107     53 ,      6      6       5:>CY090507,A/India/D058688/2005,2005/03/09,India,H3N2         
   6 >CY090512,A/India/D0612412/2005,2005/04/26,India,H3N2        ----................................G..................................C...T......A..............................................................................................T.T..............-------------------------------------------      107     53 ,      6      6       6:>CY090512,A/India/D0612412/2005,2005/04/26,India,H3N2        
   7 >CY090494,A/India/D0512581/2006,2006/01/20,India,H3N2        ----................................G..................................C...T......A..............................................................................................T.T..............-------------------------------------------      107     53 ,      6      6       7:>CY090494,A/India/D0512581/2006,2006/01/20,India,H3N2        
   8 >CY090513,A/India/D0612414/2005,2005/11/03,India,H3N2        ----................................G..................................C...T......A..............................................................................................T.T..............-------------------------------------------      107     53 ,      6      6       8:>CY090513,A/India/D0612414/2005,2005/11/03,India,H3N2        
   9 >CY090492,A/India/D0512578/2005,2005/07/01,India,H3N2        ----................................G..................................C...T......A..............................................................................................T.T..............-------------------------------------------      108     53 ,      7      6       9:>CY090492,A/India/D0512578/2005,2005/07/01,India,H3N2        
  10 >CY090508,A/India/D058689/2005,2005/03/10,India,H3N2         ----................................G..................................C...T......A..............................................................................................T.T..............-------------------------------------------      107     53 ,      6      6      10:>CY090508,A/India/D058689/2005,2005/03/10,India,H3N2         
  11 >CY090478,A/India/K0615330/2005,2005/10/06,India,H3N2        ----.................T..............G......................................T......A..............................................................................................T.T...............C.....CAGC--------------------------------      103     47 ,     19     11      11:>CY090478,A/India/K0615330/2005,2005/10/06,India,H3N2        
  12 >CY090547,A/India/P064830/2006,2006/03/13,India,H3N2         ----................................G......................................T......A..............................................................................................T................-------------------------------------------      105     51 ,      4      4      12:>CY090547,A/India/P064830/2006,2006/03/13,India,H3N2         
  13 >CY090545,A/India/P0622622/2006,2006/09/19,India,H3N2        ----................................G.............................................A...............................................G....................T.........................T................-------------------------------------------      109     52 ,      8      5      13:>CY090545,A/India/P0622622/2006,2006/09/19,India,H3N2        
  14 >CY090542,A/India/P0614474/2006,2006/06/15,India,H3N2        ----.......................................................................T......A..............................................................................................T................-------------------------------------------      104     50 ,      3      3      14:>CY090542,A/India/P0614474/2006,2006/06/15,India,H3N2        
  15 >GU323731,A/Kolkata/243/2006,2006/06/,India,H3N2             ----..............................................................................A.....................................................................................C.....................-----------------------------------------------      111     53 ,      3      2      15:>GU323731,A/Kolkata/243/2006,2006/06/,India,H3N2             
  16 >2007/02/06,14278,AUS,A/Brisbane/10/07                       ........................................................................................................................................................................C..........................C..........T.......G....C.C..........C....        8      7 ,      8      7      16:>2007/02/06,14278,AUS,A/Brisbane/10/07                       
  17 >Index/Brisbane-like/2007                                    .....T.............................................................................................................................................................................................C..........T.......G....C.C..........C....        8      7 ,      8      7      17:>Index/Brisbane-like/2007                                    
  18 >Index/USA-2007                                              .....T.............................................................................................................................................................................................C..........T.......G....C.C..........C....        7      7 ,      7      7      18:>Index/USA-2007                                              
  19 >CY022936,A/India/AF1082/2007,2007/02/11,India,H3N2          ----.T......................................................................G......................................................................................................................C.........--------------------------------       87     39 ,      3      3      19:>CY022936,A/India/AF1082/2007,2007/02/11,India,H3N2          
  20 >CY090562,A/India/Pach083665/2008,2008/03/08,India,H3N2      ----.T................G.....................................................G....................T..........C...G.....................................................................G...........-------------------------------------------      108     54 ,      7      7      20:>CY090562,A/India/Pach083665/2008,2008/03/08,India,H3N2      
  21 >CY090564,A/India/Pach083698/2008,2008/03/08,India,H3N2      ----.T................G.....................................................G....................T..........C...G.....................................................................G...........-------------------------------------------      108     54 ,      7      7      21:>CY090564,A/India/Pach083698/2008,2008/03/08,India,H3N2      
  22 >CY090560,A/India/Pach083605/2008,2008/03/08,India,H3N2      ----.T................G.....................................................G....................T..........C...G.........................A...........................................G...........-------------------------------------------      109     55 ,      8      8      22:>CY090560,A/India/Pach083605/2008,2008/03/08,India,H3N2      
  23 >CY090561,A/India/Pach083644/2008,2008/03/08,India,H3N2      ----.T................G.....................................................G....................T..........C...G.........................A...........................................G...........-------------------------------------------      109     55 ,      8      8      23:>CY090561,A/India/Pach083644/2008,2008/03/08,India,H3N2      
  24 >CY090563,A/India/Pach083677/2008,2008/03/08,India,H3N2      ----.T................G.....................................................G....................T..........C...G.....................................................................G...........-------------------------------------------      108     54 ,      7      7      24:>CY090563,A/India/Pach083677/2008,2008/03/08,India,H3N2      
  25 >GU323744,A/Kolkata/1610/2008,2008/06/,India,H3N2            -----T................G.....................................................G....................T..........C...G.....................................................................G...........-------------------------------------------      117     55 ,      8      7      25:>GU323744,A/Kolkata/1610/2008,2008/06/,India,H3N2            
  26 >CY090451,A/India/C0817297/2008,2008/11/14,India,H3N2        ----ATA...............G......................T..............................................................C.........................................................................G.....C.....-------------------------------------------      109     55 ,      8      8      26:>CY090451,A/India/C0817297/2008,2008/11/14,India,H3N2        
  27 >CY090448,A/India/C0817285/2008,2008/11/03,India,H3N2        ----.T................G......................T..............................................................C.....................................................................T...G...........-------------------------------------------      107     53 ,      6      6      27:>CY090448,A/India/C0817285/2008,2008/11/03,India,H3N2        
  28 >CY090447,A/India/C0817284/2008,2008/11/03,India,H3N2        ----.T................G......................T..............................................................C.........................................................................G...........-------------------------------------------      106     52 ,      5      5      28:>CY090447,A/India/C0817284/2008,2008/11/03,India,H3N2        
  29 >CY090446,A/India/C0817271/2008,2008/10/13,India,H3N2        ----.T................G......................T..............................................................C.........................................................................G...........-------------------------------------------      106     52 ,      5      5      29:>CY090446,A/India/C0817271/2008,2008/10/13,India,H3N2        
  30 >CY090445,A/India/C0817268/2008,2008/10/06,India,H3N2        ----.T................G......................T..............................................................C.........................................................................G...........-------------------------------------------      106     52 ,      5      5      30:>CY090445,A/India/C0817268/2008,2008/10/06,India,H3N2        
  31 >CY090452,A/India/C0817302/2008,2008/11/18,India,H3N2        ----.T................G......................T..............................................................C.........................................................................G...........-------------------------------------------      106     52 ,      5      5      31:>CY090452,A/India/C0817302/2008,2008/11/18,India,H3N2        
  32 >CY090449,A/India/C0817292/2008,2008/11/06,India,H3N2        ----.T................G......................T..............................................................C.........................................................................G.......G...-------------------------------------------      111     53 ,     10      6      32:>CY090449,A/India/C0817292/2008,2008/11/06,India,H3N2        
  33 >HQ415589,A/Assam/2112/2009,2009/08/03,India,H3N2            ----------------------------------------------------------................................T........------------------------------------------------------------------------------------------------------------------------------------------      390    197 ,      1      1      33:>HQ415589,A/Assam/2112/2009,2009/08/03,India,H3N2            
  34 >Index/32g12f1.c2,55-62                                      C.A..T.............G......G...........A.............C..A.C................................T........C............C.......G..........A...T..........T..G.A......A......C.................C.....AA................G...........C..C....G..A..G...       34     29 ,     34     29      34:>Index/32g12f1.c2,55-62                                      
  35 >Index/H3N3-2011-reassortedEI/2011(H3N2)                     .....T.............G..................A.............C..A.C................................T........C............C.......G..........AG..T..........T..G...............C.......................AA................G...........C..C....G..A..G...       24     24 ,     24     24      35:>Index/H3N3-2011-reassortedEI/2011(H3N2)                     
  36 >HQ415588,A/Assam/SW107/2009,2009/08/25,India,H3N2           ----------------------------------------------------------................................T........C..---------------------------------------------------------------------------------------------------------------------------------------      388    195 ,      2      2      36:>HQ415588,A/Assam/SW107/2009,2009/08/25,India,H3N2           
  37 >HM371169,A/KOL/2136/2009,2009//,India,H3N2                  ----.T......T....................G.....................AG.................................T........C............C.......G..........AG.............T...............................-----------------------------------------------------------      152     75 ,     13     12      37:>HM371169,A/KOL/2136/2009,2009//,India,H3N2                  
  38 >Index/H3N2-2011-normalEI/2011(H3N2)                         C....T...........................G.......T.............AG.................................T........C............C.......G..........AG.............T.....................................G....A.......A.....................C.............G...       19     18 ,     19     18      38:>Index/H3N2-2011-normalEI/2011(H3N2)                         
  39 >A/Czech Republic/121/2012,2012/03/06,Czech Republic         .....T..T.................G.....A.TA...................A..........A...........T...........T.A......C..........G.C.......G....T.....AG........A....T................G....................G....A.......................C...................G..G       28     26 ,     28     26      39:>A/Czech Republic/121/2012,2012/03/06,Czech Republic         
  40 >Index/32g12f1.c2,38-41                                      .....T..T.................G.....A.T......A..G......T...A..........A...........T..........GT.A......C............C....CA.G....T.....AG........A....T................G....................G....A.......................C.............GG....G..G       33     32 ,     33     32      40:>Index/32g12f1.c2,38-41                                      
  41 >Index/32g12f1.c2,10-37                                      .....T..T.................G.....A.T................T...A......................T..........GT.A......C............C.......G....T.....AG........A....T....A...........G......A.............G....A.......................C..............G....G..G       29     28 ,     29     28      41:>Index/32g12f1.c2,10-37                                      
  42 >KF668200,A/India/LKO3863/2013,2013/07/06,India,H3N2         ----------------------------------------------------------------------........T....G.....GT.A......C............C.......G....T.....AG........A....T................G....................G....A.......----------------------------------------      254    126 ,     16     16      42:>KF668200,A/India/LKO3863/2013,2013/07/06,India,H3N2         
  43 >KF668196,A/India/LKO3818/2013,2013/06/25,India,H3N2         -------------------------------------------------------------------.G.........T....G.....GT.A......C......A.....C.......G....T.....AG........A....T................G....................G....A.......----------------------------------------      253    125 ,     18     18      43:>KF668196,A/India/LKO3818/2013,2013/06/25,India,H3N2         
  44 >KF668201,A/India/LKO3876/2013,2013/07/09,India,H3N2         -------------------------------------------------------------------.G.........T....G.....GT.A...C..C............C.......G....T.....AG........A....T................G....................G....A.......----------------------------------------      254    125 ,     19     18      44:>KF668201,A/India/LKO3876/2013,2013/07/09,India,H3N2         
  45 >KF668198,A/India/LKO3825/2013,2013/06/26,India,H3N2         ------------------------------------------------------------------..G.........T....G.....GT.A...C..C............C.......G....T.....AG........A....T................G....................G....A.......----------------------------------------      252    124 ,     18     18      45:>KF668198,A/India/LKO3825/2013,2013/06/26,India,H3N2         
  46 >KF668197,A/India/LKO3824/2013,2013/06/26,India,H3N2         -------------------------------------------------------------.......G.........T....G.....GT.A...C..C.....T......C.......G....T.....AG........A....T................G............G.......G....A.......----------------------------------------      238    121 ,     20     20      46:>KF668197,A/India/LKO3824/2013,2013/06/26,India,H3N2         
  47 >KF668199,A/India/LKO3839/2013,2013/06/29,India,H3N2         ------------------------------------------------------------------..G.........T....G.....GT.A...C..C............C.......G....T.....AG........A....T................G....................G....A.......----------------------------------------      252    124 ,     18     18      47:>KF668199,A/India/LKO3839/2013,2013/06/29,India,H3N2         
  48 >KF668203,A/India/LKO3889/2013,2013/07/11,India,H3N2         -------------------------------------------------------------------.G.........T....G.....GT.A...C..C............C.......G....T.....AG........A....T................G....................G....A.......----------------------------------------      253    125 ,     18     18      48:>KF668203,A/India/LKO3889/2013,2013/07/11,India,H3N2         
  49 >KF668205,A/India/LKO3906/2013,2013/07/15,India,H3N2         ------------------------------------------------------------------------------T....G.....GT.A...C..C............C.......G....T.....AG........A....T................G....................G....A.......AA......--------------------------------      255    129 ,     19     19      49:>KF668205,A/India/LKO3906/2013,2013/07/15,India,H3N2         
  50 >KF668206,A/India/LKO3913/2013,2013/07/16,India,H3N2         ------------------------------------------------------------------..G.........T....G.....GT.A......C............C.......G....T.....AG........A....T................G....................G....A.......AA......--------------------------------      244    117 ,     19     19      50:>KF668206,A/India/LKO3913/2013,2013/07/16,India,H3N2         
  51 >KF668207,A/India/LKO3914/2013,2013/07/16,India,H3N2         ------------------------------------------------------------------..G.........T....G.....GT.A......C............C.......G....T.....AG........A....T................G....................G....A.......AA......--------------------------------      238    117 ,     20     19      51:>KF668207,A/India/LKO3914/2013,2013/07/16,India,H3N2         
  52 >KF668204,A/India/LKO3893/2013,2013/07/12,India,H3N2         --------------------------------------------------------------------G.........T....G.....GT.A......C............C.......G....T.....AG........A....T................G...............T....G....A.......----------------------------------------      255    126 ,     19     18      52:>KF668204,A/India/LKO3893/2013,2013/07/12,India,H3N2         
  53 >KF668202,A/India/LKO3887/2013,2013/07/10,India,H3N2         -----------------------------------------------------------------------.......T....G.....GT.A......C............C.......G....T.....AG........A....T................G...............T....G....A.......AA......--------------------------------      245    122 ,     19     19      53:>KF668202,A/India/LKO3887/2013,2013/07/10,India,H3N2         
  54 >KF668187,A/India/LKO845/2011,2011/07/26,India,H3N2          ------------------------------------------------------------------.......................GT........C............C.......G....T.....AG........A....T.....................................G....A.......----------------------------------------      243    118 ,     12     12      54:>KF668187,A/India/LKO845/2011,2011/07/26,India,H3N2          
  55 >KF668188,A/India/LKO851/2011,2011/07/27,India,H3N2          ------------------------------------------------------------------.......................GT........C............C.......G....T.....AG........A....T.....................................G....A.......----------------------------------------      246    118 ,     12     12      55:>KF668188,A/India/LKO851/2011,2011/07/27,India,H3N2          
  56 >KF668192,A/India/LKO983/2011,2011/08/25,India,H3N2          ------------------------------------------------------------------.......................GT........C............C.......G....T.....AG........A....T.....................................G....A.......----------------------------------------      241    118 ,     12     12      56:>KF668192,A/India/LKO983/2011,2011/08/25,India,H3N2          
  57 >KF142487,A/India/LKO865/2011,2011/07/29,India,H3N2          ------------------------------------------------------------.............................GT........C............C.......G....T.....AG........A....T.....................---------------------------------------------------------------------      271    139 ,     10     10      57:>KF142487,A/India/LKO865/2011,2011/07/29,India,H3N2          
  58 >KF668185,A/India/LKO799/2011,2011/07/16,India,H3N2          -------------------------------------------------------------............................GT........C............C.......G....T.....AG........A....T.....................................G....A...........------------------------------------      225    109 ,     12     12      58:>KF668185,A/India/LKO799/2011,2011/07/16,India,H3N2          
  59 >KF668189,A/India/LKO856/2011,2011/07/28,India,H3N2          ------------------------------------------------------------------.......................GT........C............C.......G....T.....AG........A....T.....................................G....A...........------------------------------------      238    114 ,     12     12      59:>KF668189,A/India/LKO856/2011,2011/07/28,India,H3N2          
  60 >KF668194,A/India/LKO1501/2012,2012/02/14,India,H3N2         ------------------------------------------------------------------.......................GT........C............C.......G....T.....AG........A....T.....................................G....A.......----------------------------------------      244    118 ,     12     12      60:>KF668194,A/India/LKO1501/2012,2012/02/14,India,H3N2         
  61 >KF668186,A/India/LKO827/2011,2011/07/25,India,H3N2          --------------------------------------------------------------------.....................GT........C.....T......C..C....G....T.....AG........A....T.....................................G....A.......----------------------------------------      251    122 ,     15     14      61:>KF668186,A/India/LKO827/2011,2011/07/25,India,H3N2          
  62 >KF668190,A/India/LKO871/2011,2011/07/29,India,H3N2          ------------------------------------------------------------CTAAA........................GT........C............C.......G....T.....AG........A....T.....................................G....A.......----------------------------------------      240    117 ,     37     17      62:>KF668190,A/India/LKO871/2011,2011/07/29,India,H3N2          
  63 >KF142488,A/India/LKO940/2011,2011/08/11,India,H3N2          --------------------------------------------------------------------.....................GT........C............C.......G....T.....AG........A....T.....................................-----------------------------------------------------      271    131 ,     10     10      63:>KF142488,A/India/LKO940/2011,2011/08/11,India,H3N2          
  64 >KF668195,A/India/LKO3108/2012,2012/12/12,India,H3N2         -------------------------------------------------------------............................GT........C............C.......G....T.....AG........A....T.....................................G....A...........------------------------------------      226    109 ,     12     12      64:>KF668195,A/India/LKO3108/2012,2012/12/12,India,H3N2         
  65 >KF668193,A/India/LKO1442/2012,2012/01/23,India,H3N2         -------------------------------------------------------------............................GT........C............C.......G....T.....AG........A....T.....................................G....A..............---------------------------------      221    106 ,     12     12      65:>KF668193,A/India/LKO1442/2012,2012/01/23,India,H3N2         
  66 >KF142486,A/India/LKO864/2011,2011/07/28,India,H3N2          ------------------------------------------------------------.............................GT........C............C.......G....T.....AG........A....T..........A........................-------------------------------------------------------      252    126 ,     12     11      66:>KF142486,A/India/LKO864/2011,2011/07/28,India,H3N2          
  67 >KF668191,A/India/LKO896/2011,2011/08/03,India,H3N2          ------------------------------------------------------------.............................GT........C............C.......G....T.....AG........A....T..........A..........................G....A.......----------------------------------------      225    113 ,     13     13      67:>KF668191,A/India/LKO896/2011,2011/08/03,India,H3N2          
  68 >Index/32g12f1.c2,42-53                                      ..AC.T.................................................A..............................G..GT........C............C.......G..........AT.G......A....T..........A...............................A.............................C.............G...       26     19 ,     26     19      68:>Index/32g12f1.c2,42-53                                      
  69 >HM371171,A/KOL/2374/2009,2009//,India,H3N2                  ----.T.................................................A..................................T........C............C.......G..........AG.............T...............................-----------------------------------------------------------      150     72 ,      9      9      69:>HM371171,A/KOL/2374/2009,2009//,India,H3N2                  
  70 >Index/2009/Egypt/Iowa                                       .....T.................................................A..................................T........C............C.......G..........AG.............T..........................................A.............................C.............G...       12     12 ,     12     12      70:>Index/2009/Egypt/Iowa                                       
  71 >HM371168,A/KOL/2043/2008,2008//,India,H3N2                  ---..T......T.....................A....................A..................................T........C............C.......G..........AG.............T..........................................A....-------------------------------------------      111     58 ,     12     12      71:>HM371168,A/KOL/2043/2008,2008//,India,H3N2                  
  72 >Index/2009/Egypt-Iowa+NA,2009//                             .....T.................................................A..................................T........C............C.......G..........AG.............T..........................................A.............................C.............G...       12     12 ,     12     12      72:>Index/2009/Egypt-Iowa+NA,2009//                             
  73 >HM371172,A/KOL/2452/2009,2009//,India,H3N2                  ---..T.................................................A..................................T........C............C.......G..........AG.............T...................................-------------------------------------------------------      133     67 ,     10      9      73:>HM371172,A/KOL/2452/2009,2009//,India,H3N2                  
  74 >HM371170,A/KOL/2257/2009,2009//,India,H3N2                  ---..T..........A......................................A..................................T........C............C.......G..........AG.............T......................--------------------------------------------------------------------      161     81 ,     13     10      74:>HM371170,A/KOL/2257/2009,2009//,India,H3N2                  
  75 >HQ415587,A/Assam/SW03/2009,2009/08/12,India,H3N2            ----------------------------------------------------------..............................A.T........C..---------------------------------------------------------------------------------------------------------------------------------------      389    196 ,      3      3      75:>HQ415587,A/Assam/SW03/2009,2009/08/12,India,H3N2            
  76 >Index/Perth-like/2009                                       .....T.....................................A............................................A..........C............C.......A.........................T................................................C.......................C.............G...       11     10 ,     11     10      76:>Index/Perth-like/2009                                       
  77 >CY090530,A/India/D0811477/2008,2008/07/15,India,H3N2        ----.T..........................................................................................................C.................................T...............................................-------------------------------------------      104     50 ,      3      3      77:>CY090530,A/India/D0811477/2008,2008/07/15,India,H3N2        
  78 >CY090487,A/India/K089060/2008,2008/06/30,India,H3N2         ----.T............................................C.............................................................C.C...............................T.......A........................................C.....CAG---------------------------------       99     47 ,     10     10      78:>CY090487,A/India/K089060/2008,2008/06/30,India,H3N2         
  79 >GU323743,A/Kolkata/1591/2008,2008/06/,India,H3N2            -----T............................................C.............................................................C.C...............................T.......A.......................................-------------------------------------------      115     54 ,      6      6      79:>GU323743,A/Kolkata/1591/2008,2008/06/,India,H3N2            
  80 >GU323746,A/Kolkata/1674/2008,2008/06/,India,H3N2            -----T............................................C.............................................................C.C...............................T.......A.......................................-------------------------------------------      115     54 ,      6      6      80:>GU323746,A/Kolkata/1674/2008,2008/06/,India,H3N2            
  81 >GU323745,A/Kolkata/1641/2008,2008/06/,India,H3N2            -----T..........................................................................................C......G........C.................................T......A........................................-------------------------------------------      116     54 ,      7      6      81:>GU323745,A/Kolkata/1641/2008,2008/06/,India,H3N2            
  82 >GU323748,A/Kolkata/1730/2008,2008/07/,India,H3N2            -----T..........................................................................................................C.................................T......................C.......................C-------------------------------------------      116     53 ,      7      5      82:>GU323748,A/Kolkata/1730/2008,2008/07/,India,H3N2            
  83 >GU323747,A/Kolkata/1696/2008,2008/07/,India,H3N2            -----T..........................................................................................................C.................................T..............................................T-------------------------------------------      117     52 ,      8      4      83:>GU323747,A/Kolkata/1696/2008,2008/07/,India,H3N2            
  84 >GU323742,A/Kolkata/1580/2008,2008/06/,India,H3N2            ---..T..........................................................................................................C.................................T...............................................-------------------------------------------      100     49 ,      3      3      84:>GU323742,A/Kolkata/1580/2008,2008/06/,India,H3N2            
  85 >GU323749,A/Kolkata/1762/2008,2008/07/,India,H3N2            ----.T..........................................................................................................C.................................T...............................................-------------------------------------------      108     50 ,      3      3      85:>GU323749,A/Kolkata/1762/2008,2008/07/,India,H3N2            
  86 >CY090477,A/India/K089051/2008,2008/06/11,India,H3N2         ----.T..........................................................................................................C.................................T.................................A.............-------------------------------------------      105     51 ,      4      4      86:>CY090477,A/India/K089051/2008,2008/06/11,India,H3N2         
  87 >CY090528,A/India/D0811474/2008,2008/07/14,India,H3N2        ----.T..........................................................................................................C.................................T.................................A.............-------------------------------------------      106     51 ,      5      4      87:>CY090528,A/India/D0811474/2008,2008/07/14,India,H3N2        
  88 >CY090457,A/India/C087866/2008,2008/02/07,India,H3N2         ----.T.............................A....................................................C.......................G........................T........T...........A.T.................................-------------------------------------------      110     55 ,      9      8      88:>CY090457,A/India/C087866/2008,2008/02/07,India,H3N2         
  89 >CY090465,A/India/C087875/2008,2008/03/26,India,H3N2         ----.T.............................A....................................................C.......................G........................T........T...........A.T.................................-------------------------------------------      109     55 ,      8      8      89:>CY090465,A/India/C087875/2008,2008/03/26,India,H3N2         
  90 >CY090459,A/India/C087868/2008,2008/02/26,India,H3N2         ----.T.............................A....................................................C.......................G........................T........T...........A.T.................................-------------------------------------------      109     55 ,      8      8      90:>CY090459,A/India/C087868/2008,2008/02/26,India,H3N2         
  91 >CY090461,A/India/C087871/2008,2008/03/08,India,H3N2         ----.T.............................A....................................................C.......................G........................T........T...........A.T.................................-------------------------------------------      109     55 ,      8      8      91:>CY090461,A/India/C087871/2008,2008/03/08,India,H3N2         
  92 >CY090454,A/India/C087882/2008,2008/04/29,India,H3N2         ----.T.......T.....................A....................................................C.......................G........................T........T...........A.T.................T...............-------------------------------------------      111     57 ,     10     10      92:>CY090454,A/India/C087882/2008,2008/04/29,India,H3N2         
  93 >CY090467,A/India/C087877/2008,2008/03/28,India,H3N2         ----.T.........T............................................................................................C...................................................T.................T...............-------------------------------------------      106     52 ,      5      5      93:>CY090467,A/India/C087877/2008,2008/03/28,India,H3N2         
  94 >CY090463,A/India/C087873/2008,2008/03/11,India,H3N2         ----.T.........T............................................................................................C.......................................................................A.G...........-------------------------------------------      106     52 ,      5      5      94:>CY090463,A/India/C087873/2008,2008/03/11,India,H3N2         
  95 >CY090468,A/India/C087878/2008,2008/03/28,India,H3N2         ----.T.........T............................................................................................C.........................................................................G...........-------------------------------------------      105     51 ,      4      4      95:>CY090468,A/India/C087878/2008,2008/03/28,India,H3N2         
  96 >CY090466,A/India/C087876/2008,2008/03/25,India,H3N2         ----.T.........T............................................................................................C.........................................................................G...........-------------------------------------------      105     51 ,      4      4      96:>CY090466,A/India/C087876/2008,2008/03/25,India,H3N2         
  97 >CY090462,A/India/C087872/2008,2008/03/10,India,H3N2         ----.T.........T............................................................................................C.........................................................................G...........-------------------------------------------      105     51 ,      4      4      97:>CY090462,A/India/C087872/2008,2008/03/10,India,H3N2         
  98 >CY090460,A/India/C087869/2008,2008/03/04,India,H3N2         ----.T.........T............................................................................................C.........................................................................G...........-------------------------------------------      105     51 ,      4      4      98:>CY090460,A/India/C087869/2008,2008/03/04,India,H3N2         
  99 >CY090456,A/India/C087864/2008,2008/02/05,India,H3N2         ----.T.........T............................................................................................C.........................................................................G...........-------------------------------------------      105     51 ,      4      4      99:>CY090456,A/India/C087864/2008,2008/02/05,India,H3N2         
 100 >CY090455,A/India/C087863/2008,2008/01/07,India,H3N2         ----.T.........T............................................................................................C.........................................................................G...........-------------------------------------------      105     51 ,      4      4     100:>CY090455,A/India/C087863/2008,2008/01/07,India,H3N2         
 101 >CY090458,A/India/C087867/2008,2008/02/26,India,H3N2         ----.T.........T............................................................................................C.........................................................................G...........-------------------------------------------      105     51 ,      4      4     101:>CY090458,A/India/C087867/2008,2008/02/26,India,H3N2         
 102 >CY090453,A/India/C087870/2008,2008/03/08,India,H3N2         ----.T.........T............................................................................................C.........................................................................G...........-------------------------------------------      105     51 ,      4      4     102:>CY090453,A/India/C087870/2008,2008/03/08,India,H3N2         
 103 >CY090464,A/India/C087874/2008,2008/03/19,India,H3N2         ----.T.........T............................................................................................C.........................................................................G...........-------------------------------------------      105     51 ,      4      4     103:>CY090464,A/India/C087874/2008,2008/03/19,India,H3N2         
 104 >CY090471,A/India/C087881/2008,2008/03/31,India,H3N2         ----.T.........T............................................................................................C.........................................................................G...........-------------------------------------------      105     51 ,      4      4     104:>CY090471,A/India/C087881/2008,2008/03/31,India,H3N2         
 105 >CY090469,A/India/C087879/2008,2008/03/31,India,H3N2         ----.T.........T............................................................................................C.........................................................................G...........-------------------------------------------      105     51 ,      4      4     105:>CY090469,A/India/C087879/2008,2008/03/31,India,H3N2         
 106 >CY090490,A/India/K089064/2008,2008/07/03,India,H3N2         ----.T......................................................................................................C.........................................................................G............C.........--------------------------------       90     40 ,      7      4     106:>CY090490,A/India/K089064/2008,2008/07/03,India,H3N2         
 107 >CY090571,A/India/V083883/2008,2008/02/11,India,H3N2         ----.T..........................................................................T...........................C.........................................................................G...........-------------------------------------------      105     51 ,      4      4     107:>CY090571,A/India/V083883/2008,2008/02/11,India,H3N2         
 108 >CY090559,A/India/P083571/2008,2008/02/29,India,H3N2         ----.T......................C...............................................................................C.........................................................................G...........-------------------------------------------      105     51 ,      4      4     108:>CY090559,A/India/P083571/2008,2008/02/29,India,H3N2         
 109 >CY090475,A/India/K089048/2008,2008/05/21,India,H3N2         ----.T.........................................C..................................................G.........C.........................................................................G...........-------------------------------------------      106     52 ,      5      5     109:>CY090475,A/India/K089048/2008,2008/05/21,India,H3N2         
 110 >CY090489,A/India/K089063/2008,2008/07/01,India,H3N2         ----.T.........................................C..................................................G.........C.............................T...........................................G............------------------------------------------      105     52 ,      7      6     110:>CY090489,A/India/K089063/2008,2008/07/01,India,H3N2         
 111 >CY090485,A/India/K089056/2008,2008/06/19,India,H3N2         ----.T.........................T...............C..................................................G.........C.............................T...........................................G............C.----------------------------------------      104     52 ,      8      8     111:>CY090485,A/India/K089056/2008,2008/06/19,India,H3N2         
 112 >CY090488,A/India/K089062/2008,2008/07/01,India,H3N2         ----.T.......................A.................C..................................................G.........C...................................................................G.....G............C.....CAGC--------------------------------      100     48 ,     12     12     112:>CY090488,A/India/K089062/2008,2008/07/01,India,H3N2         
 113 >CY090483,A/India/K0810436/2008,2008/07/02,India,H3N2        ----.T..........................T..............C..................................................G.........C.G.......................................................................G............C.....------------------------------------      101     48 ,      9      8     113:>CY090483,A/India/K0810436/2008,2008/07/02,India,H3N2        
 114 >GU323740,A/Kolkata/1537/2008,2008/05/25,India,H3N2          --TC.T.........................................C..................................................G.........C.........................................................................G...........-------------------------------------------      108     52 ,     14      7     114:>GU323740,A/Kolkata/1537/2008,2008/05/25,India,H3N2          
 115 >GU323750,A/Kolkata/1784/2008,2008/07/,India,H3N2            --------------....................................................................................G.........C............................................................C............G.......-----------------------------------------------      137     65 ,      6      4     115:>GU323750,A/Kolkata/1784/2008,2008/07/,India,H3N2            
 116 >CY090572,A/India/V083884/2008,2008/02/19,India,H3N2         ----.T.......A..............................................................................................C.........................................................................G...........-------------------------------------------      106     51 ,      5      4     116:>CY090572,A/India/V083884/2008,2008/02/19,India,H3N2         
 117 >CY090470,A/India/C087880/2008,2008/03/31,India,H3N2         ----.T......................................................................................................C.........................................................................G...........-------------------------------------------      105     50 ,      4      3     117:>CY090470,A/India/C087880/2008,2008/03/31,India,H3N2         
 118 >CY090486,A/India/K089059/2008,2008/06/23,India,H3N2         ----.T..........................................................................................C...........C.........................................................................G............C.....------------------------------------       97     45 ,      5      5     118:>CY090486,A/India/K089059/2008,2008/06/23,India,H3N2         
 119 >CY090484,A/India/K0810437/2008,2008/07/09,India,H3N2        ----AT.....................................A................................................................C...............................................A.........................G............C.....------------------------------------       99     47 ,      7      7     119:>CY090484,A/India/K0810437/2008,2008/07/09,India,H3N2        
 120 >CY090482,A/India/K0810434/2008,2008/07/02,India,H3N2        ----AT.....................................A................................................................CT..............................................A.........................G............C.........--------------------------------       91     44 ,      8      8     120:>CY090482,A/India/K0810434/2008,2008/07/02,India,H3N2        
 121 >CY090481,A/India/K0810433/2008,2008/07/02,India,H3N2        ----.T.....................................A................................................................C.........................................................................G........G...C.....------------------------------------      100     46 ,      8      6     121:>CY090481,A/India/K0810433/2008,2008/07/02,India,H3N2        
 122 >CY090529,A/India/D0811475/2008,2008/07/14,India,H3N2        ----.T.....................................A................................................................C.........................................................................G...........-------------------------------------------      105     51 ,      4      4     122:>CY090529,A/India/D0811475/2008,2008/07/14,India,H3N2        
 123 >CY090476,A/India/K089049/2008,2008/06/04,India,H3N2         ----.T......................................................................................................C.............................................C...........................G...........-------------------------------------------      105     51 ,      4      4     123:>CY090476,A/India/K089049/2008,2008/06/04,India,H3N2         
 124 >GU323741,A/Kolkata/1566/2008,2008/06/,India,H3N2            ----.T......................................................................................................C.............................................C...........................G...........-------------------------------------------      108     51 ,      5      4     124:>GU323741,A/Kolkata/1566/2008,2008/06/,India,H3N2            
 125 >GU323723,A/Kolkata/43/2005,2005/10/,India,H3N2              ------......................................................................................................C....................................................................................--------------------------------------------      117     51 ,      6      1     125:>GU323723,A/Kolkata/43/2005,2005/10/,India,H3N2              
 126 >GU323725,A/Kolkata/104/2005,2005/12/,India,H3N2             -----..............G...................C..........................................................................................................................................................-------------------------------------------      113     50 ,      4      2     126:>GU323725,A/Kolkata/104/2005,2005/12/,India,H3N2             
 127 >CY090569,A/India/V0713791/2007,2007/02/02,India,H3N2        ----..........A...................................................................................................................................................................................-------------------------------------------      103     48 ,      2      1     127:>CY090569,A/India/V0713791/2007,2007/02/02,India,H3N2        
 128 >CY090570,A/India/V0713793/2007,2007/06/14,India,H3N2        ----..........A...................................................................................................................................................................................-------------------------------------------      102     48 ,      1      1     128:>CY090570,A/India/V0713793/2007,2007/06/14,India,H3N2        
 129 >CY090479,A/India/K0713778/2007,2007/07/23,India,H3N2        ----..........A...................................................................................................................................................................................-------------------------------------------      102     48 ,      1      1     129:>CY090479,A/India/K0713778/2007,2007/07/23,India,H3N2        
 130 >CY090567,A/India/V0713789/2007,2007/01/31,India,H3N2        ----..........A...................................................................................................................................................................................-------------------------------------------      102     48 ,      1      1     130:>CY090567,A/India/V0713789/2007,2007/01/31,India,H3N2        
 131 >CY090565,A/India/V0713786/2007,2007/01/20,India,H3N2        ----..........A...................................................................................................................................................................................-------------------------------------------      102     48 ,      1      1     131:>CY090565,A/India/V0713786/2007,2007/01/20,India,H3N2        
 132 >CY090566,A/India/V0713788/2007,2007/01/30,India,H3N2        ----..........A...................................................................................................................................................................................-------------------------------------------      102     48 ,      1      1     132:>CY090566,A/India/V0713788/2007,2007/01/30,India,H3N2        
 133 >CY090568,A/India/V0713790/2007,2007/02/01,India,H3N2        ----..........A...................................................................................................................................................................................-------------------------------------------      102     48 ,      1      1     133:>CY090568,A/India/V0713790/2007,2007/02/01,India,H3N2        
 134 >CY090556,A/India/P077594/2007,2007/07/23,India,H3N2         ----.................................................................................A..A.........................................................................................................-------------------------------------------      104     49 ,      3      2     134:>CY090556,A/India/P077594/2007,2007/07/23,India,H3N2         
 135 >CY090557,A/India/P077595/2007,2007/07/23,India,H3N2         ----.................................................................................A..A.........................................................................................................-------------------------------------------      103     49 ,      2      2     135:>CY090557,A/India/P077595/2007,2007/07/23,India,H3N2         
 136 >CY090551,A/India/And071559/2007,2007/11/02,India,H3N2       ----....................................................................................A.........................................................................................................-------------------------------------------      102     48 ,      1      1     136:>CY090551,A/India/And071559/2007,2007/11/02,India,H3N2       
 137 >CY090555,A/India/P076178/2007,2007/06/18,India,H3N2         ----....................................................................................A.........................................................................................................-------------------------------------------      102     48 ,      1      1     137:>CY090555,A/India/P076178/2007,2007/06/18,India,H3N2         
 138 >CY090553,A/India/P076175/2007,2007/06/18,India,H3N2         ----....................................................................................A.........................................................................................................-------------------------------------------      102     48 ,      1      1     138:>CY090553,A/India/P076175/2007,2007/06/18,India,H3N2         
 139 >CY090535,A/India/N075663/2007,2007/03/06,India,H3N2         ----....................................................................................A.........................................................................................................-------------------------------------------      102     48 ,      1      1     139:>CY090535,A/India/N075663/2007,2007/03/06,India,H3N2         
 140 >CY090552,A/India/P076064/2007,2007/06/11,India,H3N2         ----....................................................................................A.........................................................................................................-------------------------------------------      102     48 ,      1      1     140:>CY090552,A/India/P076064/2007,2007/06/11,India,H3N2         
 141 >CY090554,A/India/P076176/2007,2007/06/18,India,H3N2         ----....................................................................................A.........................................................................................................-------------------------------------------      102     48 ,      1      1     141:>CY090554,A/India/P076176/2007,2007/06/18,India,H3N2         
 142 >CY090558,A/India/P077597/2007,2007/07/23,India,H3N2         ----....................................................................................A.........................................................................................................-------------------------------------------      102     48 ,      1      1     142:>CY090558,A/India/P077597/2007,2007/07/23,India,H3N2         
 143 >GU323726,A/Kolkata/158/2005,2005/12/,India,H3N2             -----........C......................................................G.................G.A.........................................................................................................-------------------------------------------      113     52 ,      4      4     143:>GU323726,A/Kolkata/158/2005,2005/12/,India,H3N2             
 144 >CY090450,A/India/C0817294/2008,2008/11/10,India,H3N2        ----ATA............................A....................................................A.......................................C.................................................................-------------------------------------------      108     53 ,      7      6     144:>CY090450,A/India/C0817294/2008,2008/11/10,India,H3N2        
 145 >GU323738,A/Kolkata/600/2006,2006/10/,India,H3N2             --------------..........................................................................................................................................................................T......----------------------------------------------      131     61 ,      2      1     145:>GU323738,A/Kolkata/600/2006,2006/10/,India,H3N2             
 146 >CY090473,A/India/K075440/2006,2006/11/03,India,H3N2         ----....TAT..................................................................................................................................................A....................................-------------------------------------------      105     51 ,      4      4     146:>CY090473,A/India/K075440/2006,2006/11/03,India,H3N2         
 147 >GU323737,A/Kolkata/595/2006,2006/10/,India,H3N2             -----........................................................................................................................................................A...........................T.......--------------------------------------------      112     51 ,      3      2     147:>GU323737,A/Kolkata/595/2006,2006/10/,India,H3N2             
 148 >GU323736,A/Kolkata/524/2006,2006/09/,India,H3N2             -----........................................................................................................................................................A...........................TG....----------------------------------------------      115     54 ,      3      3     148:>GU323736,A/Kolkata/524/2006,2006/09/,India,H3N2             
 149 >GU323739,A/Kolkata/617/2007,2007/01/,India,H3N2             -----................................................................................................................................................-.......A........................-------------------------------------------------------      138     62 ,      3      1     149:>GU323739,A/Kolkata/617/2007,2007/01/,India,H3N2             
 150 >CY090548,A/India/P0713435/2007,2007/10/05,India,H3N2        ----.........................................................................................................................................................A....................................-------------------------------------------      104     48 ,      3      1     150:>CY090548,A/India/P0713435/2007,2007/10/05,India,H3N2        
 151 >CY090550,A/India/P0715485/2007,2007/11/02,India,H3N2        ----................................................................................A...........C............................................................A....................................-------------------------------------------      105     50 ,      4      3     151:>CY090550,A/India/P0715485/2007,2007/11/02,India,H3N2        
 152 >CY090549,A/India/P0715484/2007,2007/11/02,India,H3N2        ----................................................................................A...........C............................................................A....................................-------------------------------------------      105     50 ,      4      3     152:>CY090549,A/India/P0715484/2007,2007/11/02,India,H3N2        
 153 >CY090474,A/India/K076499/2006,2006/07/04,India,H3N2         ----.........A..................T...G....................C........A.G......T......A.............C..................C.........................................A...................T................-------------------------------------------      116     59 ,     15     12     153:>CY090474,A/India/K076499/2006,2006/07/04,India,H3N2         
 154 >CY090522,A/India/D0635425/2006,2006/02/24,India,H3N2        ----...T............................G...............................GT.....T.....TAG............C...............G...................................................A............T................-------------------------------------------      115     59 ,     14     12     154:>CY090522,A/India/D0635425/2006,2006/02/24,India,H3N2        
 155 >CY090527,A/India/D0635433/2006,2006/08/30,India,H3N2        ----...T............................G...........A..............T....GT.....T.....TAG............C...............G...T.....................T.............................G.A..A.G.TT...............-------------------------------------------      128     67 ,     27     20     155:>CY090527,A/India/D0635433/2006,2006/08/30,India,H3N2        
 156 >CY090534,A/India/Dib0622569/2006,2006/06/27,India,H3N2      ----...T............................G.......G.......................G......T......AG............................G...................................................A.....ATCAA..T..........C.....-------------------------------------------      118     63 ,     17     16     156:>CY090534,A/India/Dib0622569/2006,2006/06/27,India,H3N2      
 157 >CY090533,A/India/Dib0622568/2006,2006/06/27,India,H3N2      ----...T............................G...............................G......T......AG............................G...................................................A.GC..ATCAAG.T..A....T.TC.....-------------------------------------------      127     68 ,     26     21     157:>CY090533,A/India/Dib0622568/2006,2006/06/27,India,H3N2      
 158 >GU323734,A/Kolkata/271/2006,2006/07/,India,H3N2             ----................................G......................................T......A...................................................................T.......................---------------------------------------------------------------      154     71 ,      8      4     158:>GU323734,A/Kolkata/271/2006,2006/07/,India,H3N2             
 159 >GU323733,A/Kolkata/265/2006,2006/07/,India,H3N2             ------------........................G...............................G......T......AG....................................................C.............T..........................T.......T.T..-----------------------------------------------      142     69 ,     14     10     159:>GU323733,A/Kolkata/265/2006,2006/07/,India,H3N2             
 160 >CY090523,A/India/D0635426/2006,2006/03/03,India,H3N2        ----...T.A..CT......................G...........A...................G......T......AG............................G................................................................T................-------------------------------------------      122     59 ,     21     12     160:>CY090523,A/India/D0635426/2006,2006/03/03,India,H3N2        
 161 >GU323735,A/Kolkata/323/2006,2006/08/,India,H3N2             ------------........................G...............................G......T......AG............C...............G................................................................T................-------------------------------------------      130     63 ,      8      8     161:>GU323735,A/Kolkata/323/2006,2006/08/,India,H3N2             
 162 >GU323730,A/Kolkata/232/2006,2006/06/,India,H3N2             ----...T...C........................G.......G.......................G......T......AG............................G................................................................T................-------------------------------------------      117     57 ,     10     10     162:>GU323730,A/Kolkata/232/2006,2006/06/,India,H3N2             
 163 >GU323728,A/Kolkata/220/2006,2006/06/,India,H3N2             ----...T............................G...............................G......T......AG............................G................................................A...............T...............--------------------------------------------      117     57 ,      9      9     163:>GU323728,A/Kolkata/220/2006,2006/06/,India,H3N2             
 164 >GU323732,A/Kolkata/256/2006,2006/07/,India,H3N2             ----...T.....................A......G...............................G......T......AG............................G................................................A...............T................-------------------------------------------      117     57 ,     10     10     164:>GU323732,A/Kolkata/256/2006,2006/07/,India,H3N2             
 165 >GU323724,A/Kolkata/77/2005,2005/11/,India,H3N2              --------............................G........................T......G......T......AG..G.........................G.G.....................................G........................T........G.....---------------------------------------------      128     65 ,     13     12     165:>GU323724,A/Kolkata/77/2005,2005/11/,India,H3N2              
 166 >CY090480,A/India/K0713780/2007,2007/07/24,India,H3N2        ----...T.....................................................T......G......T......AG..G.........................G.......................................G........................T................-------------------------------------------      111     57 ,     10     10     166:>CY090480,A/India/K0713780/2007,2007/07/24,India,H3N2        
 167 >CY090515,A/India/D0612421/2006,2006/01/23,India,H3N2        ----...T............................G...............................G......T......AG....C...................C........C................G..........................................T.....C.....A....-------------------------------------------      115     60 ,     14     13     167:>CY090515,A/India/D0612421/2006,2006/01/23,India,H3N2        
 168 >CY090472,A/India/K072142/2006,2006/07/07,India,H3N2         ----...T......................C.....G.....A.........................G......T......AG....................................................C........................................T................-------------------------------------------      112     57 ,     11     10     168:>CY090472,A/India/K072142/2006,2006/07/07,India,H3N2         
 169 >GU323727,A/Kolkata/216/2006,2006/06/,India,H3N2             ----...T............................G.....A.........................G......T......AG....................................................C........................................T................-------------------------------------------      116     56 ,      9      9     169:>GU323727,A/Kolkata/216/2006,2006/06/,India,H3N2             
 170 >CY090543,A/India/P0618457/2006,2006/07/25,India,H3N2        ----................................G......................................T......A..............................................................................................T................-------------------------------------------      106     51 ,      5      4     170:>CY090543,A/India/P0618457/2006,2006/07/25,India,H3N2        
 171 >GU323729,A/Kolkata/229/2006,2006/06/,India,H3N2             -----...............................G......................................T......A..............................................................................................T...............--------------------------------------------      115     53 ,      5      4     171:>GU323729,A/Kolkata/229/2006,2006/06/,India,H3N2             
 172 >EU502547,A/India/II-0634983/2006,2006/11/09,India,H3N2      ----T...............................G.................G...A................T......A..........................G...................................................................T.T..............-------------------------------------------      110     56 ,      9      9     172:>EU502547,A/India/II-0634983/2006,2006/11/09,India,H3N2      
 173 >CY090442,A/India/C0634982/2006,2006/11/09,India,H3N2        ----T...............................G.................G...A................T......A..........................G.....................................................................T..............-------------------------------------------      109     55 ,      8      8     173:>CY090442,A/India/C0634982/2006,2006/11/09,India,H3N2        
 174 >CY090444,A/India/C0634985/2006,2006/11/14,India,H3N2        ----T...............................G.................G...A................T.T....A..........................G.....................................................................T..............-------------------------------------------      111     56 ,     10      9     174:>CY090444,A/India/C0634985/2006,2006/11/14,India,H3N2        
 175 >CY090443,A/India/C0634983/2006,2006/11/09,India,H3N2        ----T...............................G.................G...A................T......A..........................G.....................................................................T..............-------------------------------------------      109     55 ,      8      8     175:>CY090443,A/India/C0634983/2006,2006/11/09,India,H3N2        
 176 >CY090439,A/India/C058669/2005,2005/04/13,India,H3N2         ----...........................G....G......................................T......A.......................................AGA...............G.G............C.......................T..............-------------------------------------------      112     58 ,     11     11     176:>CY090439,A/India/C058669/2005,2005/04/13,India,H3N2         
 177 >CY090436,A/India/C058666/2004,2004/12/24,India,H3N2         ----............G..............G....G....A.......T...G.....................T......A.......................................AGA...............G.G............C.......................T..............-------------------------------------------      116     62 ,     15     15     177:>CY090436,A/India/C058666/2004,2004/12/24,India,H3N2         
 178 >CY090438,A/India/C058668/2005,2005/04/11,India,H3N2         ----...........................G....G......................................T......A.......................................AGA...............G.G..........A.C.......................T..............-------------------------------------------      114     59 ,     13     12     178:>CY090438,A/India/C058668/2005,2005/04/11,India,H3N2         
 179 >EU032579,A/Pandharpur/20055208/2005,2005/07/19,India,H3N2   ----................A...............G.......................A.........C....T......A.............................G....C....AGA......A.......CG.G............C.......................T..............-------------------------------------------      118     64 ,     17     17     179:>EU032579,A/Pandharpur/20055208/2005,2005/07/19,India,H3N2   
 180 >CY090538,A/India/P055208/2005,2005/07/19,India,H3N2         ----................A...............G.......................A.........C....T......A.............................G....C....AGA......A.......CG.G............C.......................T..............-------------------------------------------      118     64 ,     17     17     180:>CY090538,A/India/P055208/2005,2005/07/19,India,H3N2         
 181 >EU032578,A/Pandharpur/20055172/2005,2005/07/19,India,H3N2   ----................................G.......................A.........C....T......A.............................G....C....AGA......A.......CG.G............C.......................T..............-------------------------------------------      117     63 ,     16     16     181:>EU032578,A/Pandharpur/20055172/2005,2005/07/19,India,H3N2   
 182 >CY090537,A/India/P055172/2005,2005/07/19,India,H3N2         ----................................G.......................A.........C....T......A.............................G....C....AGA......A.......CG.G............C.......................T..............-------------------------------------------      117     63 ,     16     16     182:>CY090537,A/India/P055172/2005,2005/07/19,India,H3N2         
 183 >CY090539,A/India/P056135/2005,2005/08/08,India,H3N2         ----................................G....................C..A.........C....T......A.............................G....C....AGA......A.......CG.G............C.......................T..............-------------------------------------------      119     64 ,     18     17     183:>CY090539,A/India/P056135/2005,2005/08/08,India,H3N2         
 184 >CY090509,A/India/D058690/2005,2005/03/15,India,H3N2         ----.T..........................A...GCA.....................A..............T......A.............................G.........AGA..............CG.G..........A.C..............G........T..............-------------------------------------------      120     66 ,     19     19     184:>CY090509,A/India/D058690/2005,2005/03/15,India,H3N2         
 185 >CY090510,A/India/D058691/2005,2005/03/16,India,H3N2         ----.T..........................A...GCA.....................A..............T......A.............................G.........AGA..............CG.G............C.......................T..............-------------------------------------------      119     64 ,     18     17     185:>CY090510,A/India/D058691/2005,2005/03/16,India,H3N2         
 186 >CY090500,A/India/D057066/2004,2004/12/17,India,H3N2         ----.T..........................A...GCA.....................A..............T......A.............................G.........AGA..............CG.G............C.......................T.A............-------------------------------------------      119     65 ,     18     18     186:>CY090500,A/India/D057066/2004,2004/12/17,India,H3N2         
 187 >CY090517,A/India/D0612425/2006,2006/01/30,India,H3N2        ----.T..........................A...GCA.....................A..............T......A.............................G.........AGA..............CG.G............C.......................T.A............-------------------------------------------      119     65 ,     18     18     187:>CY090517,A/India/D0612425/2006,2006/01/30,India,H3N2        
 188 >CY090516,A/India/D0612424/2006,2006/01/30,India,H3N2        ----.T..........................A...GCA.....................A..............T......A.............................G.........AGA...C..........CG.G............C.......................T.A............-------------------------------------------      121     66 ,     20     19     188:>CY090516,A/India/D0612424/2006,2006/01/30,India,H3N2        
 189 >CY090518,A/India/D0612426/2006,2006/02/01,India,H3N2        ----.T..........................A...GCA.....................A..............T......A.............................G.........AGA..............CG.G............C.....................T.T............C.-------------------------------------------      120     66 ,     19     19     189:>CY090518,A/India/D0612426/2006,2006/02/01,India,H3N2        
 190 >CY090519,A/India/D0635419/2005,2005/12/19,India,H3N2        ----.T..........................A...GCA.....................A..............T......A.............................G.........AGA..............CG.G............C......G..............T.T..............-------------------------------------------      120     66 ,     19     19     190:>CY090519,A/India/D0635419/2005,2005/12/19,India,H3N2        
 191 >CY090521,A/India/D0635422/2006,2006/01/14,India,H3N2        ----.T..........................A...GCA.....................A..............T......A.......................A.....G.........AGA.C............CG.G............C......G..............T.T..............-------------------------------------------      122     68 ,     21     21     191:>CY090521,A/India/D0635422/2006,2006/01/14,India,H3N2        
 192 >CY090520,A/India/D0635421/2006,2006/01/14,India,H3N2        ----...................A............G.......................A....C.........TG.....A.............................G.........AGA.C......C....A.G.G............C......G..............T.T..............-------------------------------------------      122     67 ,     21     20     192:>CY090520,A/India/D0635421/2006,2006/01/14,India,H3N2        
 193 >CY090546,A/India/P063078/2006,2006/03/04,India,H3N2         ----................................G.......................A....C.........TG.....A.............................G.........AGA..G.....C......G.G............C.....................T.T..............-------------------------------------------      118     64 ,     17     17     193:>CY090546,A/India/P063078/2006,2006/03/04,India,H3N2         
 194 >CY090524,A/India/D0635427/2006,2006/05/10,India,H3N2        ----................................G....................C..A....C.........TG.....A.............................G.........AGA..G.....C......G.G............C.....................T.T..............-------------------------------------------      119     65 ,     18     18     194:>CY090524,A/India/D0635427/2006,2006/05/10,India,H3N2        
 195 >CY090514,A/India/D0612416/2005,2005/12/07,India,H3N2        ----................................G....................C..A....C.........TG.....A.............................G.........AGA..G.....C......G.G............C.....................T.T..............-------------------------------------------      119     65 ,     18     18     195:>CY090514,A/India/D0612416/2005,2005/12/07,India,H3N2        
 196 >CY090525,A/India/D0635428/2006,2006/06/09,India,H3N2        ----................................G....................C..A....C.........TG.....A.............................G.........AGA..G.....C......G.G............C.....................T.T..............-------------------------------------------      119     65 ,     18     18     196:>CY090525,A/India/D0635428/2006,2006/06/09,India,H3N2        
 197 >CY090540,A/India/P057475/2005,2005/08/29,India,H3N2         ----................................G.......................A....C.........T......A.............................G.........AGA...............G.G............C.....................T.T..............-------------------------------------------      116     61 ,     15     14     197:>CY090540,A/India/P057475/2005,2005/08/29,India,H3N2         
 198 >CY090433,A/India/C053375/2004,2004/09/24,India,H3N2         ----................................G.......................A..............T......A.............................G.........AGA...............G.G............C.....................T.T..............-------------------------------------------      114     60 ,     13     13     198:>CY090433,A/India/C053375/2004,2004/09/24,India,H3N2         
 199 >CY090435,A/India/C058665/2004,2004/11/09,India,H3N2         ----................................G.......................A..............T......A.............................G.........AGA...............G.G............C.....................T.T..............-------------------------------------------      115     60 ,     14     13     199:>CY090435,A/India/C058665/2004,2004/11/09,India,H3N2         
 200 >CY090536,A/India/P05142/2005,2005/01/10,India,H3N2          ----................................G...................................T..T......A..............................G........AGA...............G.G............C.....................T.T..............-------------------------------------------      117     60 ,     16     13     200:>CY090536,A/India/P05142/2005,2005/01/10,India,H3N2          
 201 >CY090526,A/India/D0635431/2006,2006/06/19,India,H3N2        ----...................A.C..........G.............................................A........C....................G.........AGA...............G.G............C.....................T................-------------------------------------------      114     60 ,     13     13     201:>CY090526,A/India/D0635431/2006,2006/06/19,India,H3N2        
 202 >CY090544,A/India/P0618976/2006,2006/08/23,India,H3N2        ----...................A.C..........G.............................................A........C....................G.........AGA...............G.G............C.....................T................-------------------------------------------      114     60 ,     13     13     202:>CY090544,A/India/P0618976/2006,2006/08/23,India,H3N2        
 203 >CY090432,A/India/C0511132/2005,2005/10/03,India,H3N2        ----.......A...........A............G......................................T......A.......A...............................AGA...............G.G............C.....................T.T............C.-------------------------------------------      118     62 ,     17     15     203:>CY090432,A/India/C0511132/2005,2005/10/03,India,H3N2        
 204 >CY090431,A/India/C0511131/2005,2005/09/28,India,H3N2        ----.......A...........A............G......................................T......A.......A...............................AGA...............G.G............C.....................T.T............C.-------------------------------------------      116     62 ,     15     15     204:>CY090431,A/India/C0511131/2005,2005/09/28,India,H3N2        
 205 >CY090437,A/India/C058667/2004,2004/12/20,India,H3N2         ----.......A...........A............G......................................T......A.......A...............................AGA...............G.G............C.....................T.T............C.-------------------------------------------      116     62 ,     15     15     205:>CY090437,A/India/C058667/2004,2004/12/20,India,H3N2         
 206 >CY090434,A/India/C058664/2004,2004/11/19,India,H3N2         ----.......A...........A............G......................................T......A.......A...............................AGA...............G.G............C.....................T.T............C.-------------------------------------------      116     62 ,     15     15     206:>CY090434,A/India/C058664/2004,2004/11/19,India,H3N2         
 207 >CY090440,A/India/C058670/2005,2005/07/25,India,H3N2         ----.......A...........A............G......................................T......A.......A...............................AGA...............G.G............C.....................T.T............C.-------------------------------------------      116     62 ,     15     15     207:>CY090440,A/India/C058670/2005,2005/07/25,India,H3N2         
 208 >EU502220,A/India/II-511132/2005,2005/10/03,India,H3N2       ----.......T...........A............G......................................T......A.......A...............................AGA...............G.G............C.....................T.T............C.-------------------------------------------      116     62 ,     15     15     208:>EU502220,A/India/II-511132/2005,2005/10/03,India,H3N2       
 209 >AY702447,A/Ind/P/URI/1/2003,2003//,India,H3N2               --------------------................G.....................................GT......A.......A.........A..................G..AGA...............G.G.GT.........C.....................T.T..G..----------------------------------------------------      170     90 ,     18     18     209:>AY702447,A/Ind/P/URI/1/2003,2003//,India,H3N2               
 210 >AY702440,A/Ind/M/URI/1/2003,2003//,India,H3N2               --------------------................G..........................A...G......GT......A.......A.........A..................G..AGA...............G.G.GT.C.......C...G.................T.T..G..----------------------------------------------------      174     94 ,     22     22     210:>AY702440,A/Ind/M/URI/1/2003,2003//,India,H3N2               
 211 >AY702441,A/Ind/M/Enc/1/2003,2003//,India,H3N2               --------------------................G..........................A...G......GT......A.......A.A.......A..................G..AGA...............G.G.GT.C.......C...G.................T.T..G..----------------------------------------------------      175     95 ,     23     23     211:>AY702441,A/Ind/M/Enc/1/2003,2003//,India,H3N2               
 212 >AY702443,A/Ind/M/URI/2/2003,2003//,India,H3N2               --------------------................G..............................G......GT......A.......A.........A..................G..AGA...............G.G.GT.C.......C...G.................T.T..G..----------------------------------------------------      173     93 ,     21     21     212:>AY702443,A/Ind/M/URI/2/2003,2003//,India,H3N2               
 213 >AY702442,A/Ind/M/Enc/2/2003,2003//,India,H3N2               --------------------................G..............................G......GT......A.......A.........A..................G..AGA...............G.G.GT.C.......C...G.................T.T..G..----------------------------------------------------      173     93 ,     21     21     213:>AY702442,A/Ind/M/Enc/2/2003,2003//,India,H3N2               
 214 >AY702444,A/Ind/P/URI/3/2003,2003//,India,H3N2               --------------------................G..............................G......GT......A.......A.........A..................G..AGA...............G.G.GT.C.......C.....................T.T.....----------------------------------------------------      172     91 ,     20     19     214:>AY702444,A/Ind/P/URI/3/2003,2003//,India,H3N2               
 215 >A/Index_Fujian_reass./2003/06(H3N2)                         ....................................G..............................G......GT......A.......A.........A..................G..AGA...............G.G.GT.C.......C.....................T.T...............C....C....CC..AC.A.GA.A..C..G.GTG...AT....       36     36 ,     36     36     215:>A/Index_Fujian_reass./2003/06(H3N2)                         
 216 >AY702446,A/Ind/P/URI/4/2003,2003//,India,H3N2               --------------------............T..................................G......GT......A.......A.........A..................G..AGA...............G.G.GT.C.......C.....................T.T.....----------------------------------------------------      173     91 ,     21     19     216:>AY702446,A/Ind/P/URI/4/2003,2003//,India,H3N2               
 217 >AY702445,A/Ind/P/URI/2/2003,2003//,India,H3N2               --------------------..........A.....G..............................G......GT......A.......A.........A..................G..AGA...............G.G.GT.C.......C.....................T.T.....----------------------------------------------------      173     92 ,     21     20     217:>AY702445,A/Ind/P/URI/2/2003,2003//,India,H3N2               
 218 >A/Index_Fujian/USA/2003(H3N2)                               ....................................G.....................................GT......A.......A.........A..................G..AGA...............G.G.GT.........C.....................T.T...............C....C....CC..AC.A.GA.A..C..G.GT....AT....       35     33 ,     35     33     218:>A/Index_Fujian/USA/2003(H3N2)                               
 219 >EU502218,A/India/II-031741-TS/2003,2003/03/03,India,H3N2    ----................................G.....................................GT......A.......A.........A..................G..AGA...............G.G.GT.........C.....................T.T..............-------------------------------------------      118     64 ,     17     17     219:>EU502218,A/India/II-031741-TS/2003,2003/03/03,India,H3N2    
 220 >2003/04/23,12897,USA,A/NY/214/03                            .......................A............G.....................................GT......A.......A....T....A..................G..AGA...............G.G.GT.........C.....................T.T...............C....C....CC..AC.A.GA.A..C..G.GT....AT....       36     35 ,     36     35     220:>2003/04/23,12897,USA,A/NY/214/03                            
 221 >A/Index_Fujian/2002(H3N2)                                   ....................................G.....................................GT......A.......A....A....A..................G..AGA...............G.G.GT.........C.....................T.T...............C....C....CC..AC.A.GA.A..C..G.GT....AT....       34     34 ,     34     34     221:>A/Index_Fujian/2002(H3N2)                                   
 222 >DQ179459,A/India/C3-45/2002,2002//,India,H3N2               ----................................G.....................................GT......A...G...A..CAA....A..................G..AGA....G..........G.G.GT.........C.....................T.T..........-----------------------------------------------      129     73 ,     22     22     222:>DQ179459,A/India/C3-45/2002,2002//,India,H3N2               
 223 >DQ179472,A/India/C3-58/2002,2002//,India,H3N2               ----.................T..C..G........G............T........................GT......A.......A..CAA....A..................G..AGA....G..........G.G.GT.........C.....................T.T..........-----------------------------------------------      133     76 ,     26     25     223:>DQ179472,A/India/C3-58/2002,2002//,India,H3N2               
 224 >EU514659,A/India/25502/2002,2002/08/16,India,H3N2           ----.................T..C..G........G............T........................GT......A.......A..CAA....A..................G..AGA....G..........G.G.GT..T......C.....................T.T...........G..-------------------------------------------      128     74 ,     27     27     224:>EU514659,A/India/25502/2002,2002/08/16,India,H3N2           
 225 >DQ179418,A/India/C3-4/2002,2002//,India,H3N2                ----.................T..C..G........G............T........................GT......A.......A..CAA....A..................G..AGA....G..........G.G.GT.........C.....................T.T..........-----------------------------------------------      132     76 ,     25     25     225:>DQ179418,A/India/C3-4/2002,2002//,India,H3N2                
 226 >CY090501,A/India/D057068/2005,2005/01/15,India,H3N2         ----............G..G....C..G......TAG...CA.......T...G.....T..A..G.......GGT......A...G...A..CAA....A.T.C...........T.AG..AGA..G.GG........TG.GG.T.......A.C..AG.................T.TT..........G.G-------------------------------------------      150     96 ,     49     49     226:>CY090501,A/India/D057068/2005,2005/01/15,India,H3N2         
 227 >CY090493,A/India/D0512580/2005,2005/01/20,India,H3N2        ----............G..G....C..G......TAG...CA.......T...G.....T..A..G.......GGT......A...G...A..CAA....A.T.C...........T.AG..AGA..G.GG........TG.GG.T.......A.C..AG.................T.TC..........G.G-------------------------------------------      150     96 ,     49     49     227:>CY090493,A/India/D0512580/2005,2005/01/20,India,H3N2        
 228 >CY090495,A/India/D0512584/2005,2005/03/23,India,H3N2        ----............G..G....C..G......TAG...CA.......T...G.....T..A..G.......GGT......A.A.G...A..C.A....A.T.C...........T.AG..AGA..G.GG........TG.GG.T.........C..AG.................T.TC..........G.G-------------------------------------------      149     95 ,     48     48     228:>CY090495,A/India/D0512584/2005,2005/03/23,India,H3N2        
 229 >CY090497,A/India/D0512587/2005,2005/08/05,India,H3N2        ----............G..G....C..G......TAG...CA.......T...G.....T..A..G.......GGT......A.A.G...A..C.A....A.T.C...........T.AG..AGA..G.GG........TG.GG.T.........C..AG.................T.TC..........G.G-------------------------------------------      149     95 ,     48     48     229:>CY090497,A/India/D0512587/2005,2005/08/05,India,H3N2        
 230 >CY090498,A/India/D0512591/2005,2005/09/02,India,H3N2        ----............G..G....C..G......TAG..CCA.......T...G.....T..A..G.......GGT......A...G...A..CAA....A.T.C...........T.AG..AGA..G.GG........TG.GG.T.........C..AG.................T.TC..........G.G-------------------------------------------      150     96 ,     49     49     230:>CY090498,A/India/D0512591/2005,2005/09/02,India,H3N2        
 231 >CY090511,A/India/D0612410/2004,2004/12/30,India,H3N2        ----....T.......G..G....C..G......TAG...CA.......T...G.....T..A..G.......GGT......A...G...A..CAA....A.T.C...........T.AG..AGA..G.GG........TG.GG.T.........C..AG.................T.TC..........G.G-------------------------------------------      150     96 ,     49     49     231:>CY090511,A/India/D0612410/2004,2004/12/30,India,H3N2        
 232 >CY090496,A/India/D0512585/2005,2005/07/30,India,H3N2        ----............G..G....C..G......TAG...CA.......T...G.....T..A..G.......GGT......A...G...A..CAA....A.T.C...........T.AG..AGA..G.GG........TG.GG.T.........C..AG.................T.TC..........G.G-------------------------------------------      149     95 ,     48     48     232:>CY090496,A/India/D0512585/2005,2005/07/30,India,H3N2        
 233 >CY090502,A/India/D058683/2005,2005/07/01,India,H3N2         ----............G..G....C..G......TAG...CA.......T...G.....T..A..G.......GGT......A...G...A..CAA....A.T.C...........T.AG..AGA..G.GG........TG.GG.T.........C..AG.................T.TC..........G.G-------------------------------------------      149     95 ,     48     48     233:>CY090502,A/India/D058683/2005,2005/07/01,India,H3N2         
 234 >CY090503,A/India/D058684/2005,2005/01/14,India,H3N2         ----............G..G....C..G......TAG...CA.......T...G.....T..A..G.......GGT......A...G...A..CAA....A.T.C...........T.AG..AGA..G.GG........TG.GG.T.........C..AG.................T.TC..........G.G-------------------------------------------      149     95 ,     48     48     234:>CY090503,A/India/D058684/2005,2005/01/14,India,H3N2         
 235 >CY090499,A/India/D057064/2004,2004/12/23,India,H3N2         ----............G..G....C..G......TAG...CA.......T...G.....T..A..G.......GGT......A...G...A..CAA....A.T.C...........T.AG..AGA..G.GG........TG.GG.T.........C..AG.................T.TC..........G.G-------------------------------------------      149     95 ,     48     48     235:>CY090499,A/India/D057064/2004,2004/12/23,India,H3N2         
 236 >CY090504,A/India/D058685/2005,2005/01/14,India,H3N2         ----............G..G....C..G......TAG...CA.......T...G.....T..A..G.......GGT......A...G...A..CAA....A.T.C...........T.AG..AGA..G.GG........TG.GG.T.........C..AG.................T.TC..........G.G-------------------------------------------      149     95 ,     48     48     236:>CY090504,A/India/D058685/2005,2005/01/14,India,H3N2         
 237 >CY090505,A/India/D058686/2005,2005/02/19,India,H3N2         ----............G..G....C..G......TAG...CA.......T...G.....T..A..G.......GGT......A...G...A..CAA....A.T.C...........T.AG..AGA..G.GG........TG.GG.T.........C..AG.................T.TC..........G.G-------------------------------------------      149     95 ,     48     48     237:>CY090505,A/India/D058686/2005,2005/02/19,India,H3N2         
 238 >CY090441,A/India/C058671/2005,2005/07/25,India,H3N2         ----............G..G....C..G......TAG...CA.......T...G.....T..A..G.......GGT......A...G...A..CAA....A.T.C...........T.AG..AGA..G.GG........TG.GG.T.........C..AG.................T.TC..........G.G-------------------------------------------      149     95 ,     48     48     238:>CY090441,A/India/C058671/2005,2005/07/25,India,H3N2         
 239 >CY090491,A/India/D0512577/2005,2005/12/24,India,H3N2        ----............G..G....C..G......TAG...CA.......T...G.....T..A..G.......GGT......A...G...A..CAA....A.T.C...........T.AG..AGA..G.GG........TG.GG.T.........C..AG.................T.TC..........G.G-------------------------------------------      149     95 ,     48     48     239:>CY090491,A/India/D0512577/2005,2005/12/24,India,H3N2        
 240 >CY090506,A/India/D058687/2005,2005/02/22,India,H3N2         ----............G..G....C.........TAG...CA.......T...G.....T..A..G.......GGT......A...G...A..CAA....A.T.C...........T.AG..AGA..G.GG........TG.GG.T.........C..AG.................T.TC..........G.G-------------------------------------------      150     94 ,     49     47     240:>CY090506,A/India/D058687/2005,2005/02/22,India,H3N2         
 241 >EU502219,A/India/II-057068/2005,2005/01/15,India,H3N2       ----............G..G....C..G......TAG...CA.......T...G.....T..A..G.......GGT......A...G...A..CAA....A.T.C...........T.AG..AGA..G.GG........TG.GG.T.........C..AG.................T.TC..........G.G-------------------------------------------      149     95 ,     48     48     241:>EU502219,A/India/II-057068/2005,2005/01/15,India,H3N2       
 242 >1997/11/29,10924,USA,A/NY/503/97                            .T..............GA.G....C..G.......AG...CA....G..T...G...........T.......GGT...A..A....T..A..CAA....A.T.C......C.......G.CAGA....GG........TG.GGGT.........C...G.................T.T...........G..CCA..AC....CC.TACCA.GAAGA.C..GGGT..C.AT.TC.       78     73 ,     78     73     242:>1997/11/29,10924,USA,A/NY/503/97                            
 243 >A/Index/32v/2011(H3N2)                                      .T.....G..T.....GA.G...AT..G..C....AG.A.CA.A..G..T..CG.AC.......AC......TG...T.A..GG..GT.....TA..G.TAGTGC.A....C........GCAAA....GG........TG.GGGT..T.....CC.A...A...............T.T.........A.G..CTA..AC....CC.TACCA..AAAA.A..GG.T..C.AT.TC.      154     90 ,    154     90     243:>A/Index/32v/2011(H3N2)                                      
                                                                                                                                                                                                                                                                                                                
---Index----------------------------------------------------------TCGTCCGACCCGAGGCTGCACCAGATATTGTAGACGAAGTTGCGACATGGTCTAACATGCGCCCCAGAACTGCAACAACCGCTAGTAATACTGACCTAAATACATCGATAAAAATTGTGATTTTGGTAGAACATACTCCAAGAAACCAGAAGAGTAGGGACGATCATGTTCAATGAACACGCATAACAAGCATATAGGTGTTCAGAGACGTTGAAGGCGATTTAAACAATGGAACTA 
-codon-position--------------------------------------------------- 1  1 12  2         1   122    121212 1    1 1 1     1  21 21   2 2112 1 1   1 21 212 12 2   12 2 2 2   1  1 11 1   2  2 212 11 1 1 1     21 11211 121     1 2   22 2212   12 12  2 12  212 1 1      12  2 1  2  1   1  2      22         21  
                                                                  000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001111111111111111111111111111111111111111111111111 
                                                                  000000000000000000011111111111111111122222222222222222233333333333444444444444444444444444445555555555555555555555556666666666666666666666777777777777777788888888888888999999999999999999990000000000000111111111111112222222334455555555666 
                                                                  033456667777888999900112234557788999900111234445677899912256889999123333334455556667777788890111112222333444455666790001122234444456888999111122222333666901133567888889011111122355556788990001114558889000123347788990013579590811224567347 
                                                                  919850152578147036989470146691712016715069223469139515783845273689940126894701680572378902321126891248178367909457045694535600356820247069024512479346258571307572124790325678904034899535890591474367892678080191328570520456373528475708721

H3N2,NA

Code:

                                                                00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000111111111111111111111111111111111111111111111111111 
                                                                00000000000000011111111111111111111111122222222222222222222222333333333333344444444444444444444444445555555555555556666666666666666777777777777777888888888888899999999999999000000000000000001111111111111111222222222233333333 
                                                                24455677788889900111222233334445566689900000111222444456777788012222447788900111223344455556667788990001124478899991123344566677899113344556778899022234557789901223344455679001111233344446790001112456788899000344889900113599 
                                                                83939808906892907489056914671291245611601235158134357858148939160589790301736289790603401235692378092681662731605690480848224723517373656344587805306981391732979097904605196462356104801253861780460162167928057438251529189201 
-codon-position-------------------------------------------------1112221 122122 12 12 2  2212 12122 11212 121122212 212 1112 1111211221112 1111121 1122  12  111212111211 121 212122121 22 1211 11112 1112 1211121 211111111111211221 1212111 211212112 2 11111  1 1 1111112111 2111 1112 1 11212 
---Index--------------------------------------------------------GTCTATCTTGTGAATACAATATTATCCCACGGACCAAGATATCGCAAGGATGAGGGGAGATATGATCGGGACGATTAAACCTGAAACGTGAATGCCGTATTCGGACTTAAGGTAATTGGGGTAGACGGACTATGTAAATCGGCGTCTGCGCCTTCACCACCACTTTATGTACCACTTGGTAGGCATATCGGAGCCTGTCGGAGCACGATTCGAGAGCCTCTGCA 
   1 >A/Index/32v/2011(H3N2)                                    A..G.CT...CAG.....GC..A........A......T...T...............A....AC.T.........G..T.GA....A.....A..A.GA.TAAG.....TA........AG.ATA.AG.....C..........T..T..T........TGT......C..T.TCCA..G.....G..AAC.T..T.ACA....AAGCCT...G...G...T.      101     71 ,    101     71       1:>A/Index/32v/2011(H3N2)                                    
   2 >AY702448,A/Ind/M/Enc/1/2003,2003//,India,H3N2             -------------------------------------------------------------------------------------------------------------GT.........AG.A.A.AG.....C..........T.....T.......TTGT......C..T..CCA..G............T.CTCACA..T.A..CC....G...G...T.      268    144 ,     35     35       2:>AY702448,A/Ind/M/Enc/1/2003,2003//,India,H3N2             
   3 >KF314605,A/India/P036800/2003,2003/08/11,India,H3N2       A..G.CT...C.G.....GC..G........A..........................A.....C..........AG....G..G..A....C...A.GA.T.AG....GT.........AG.A.A.AG.....C..........T.....T.......TTGT......C..T..CCA..G............T.CTCACA..T.A..CC....G...G...--       61     60 ,     58     58       3:>KF314605,A/India/P036800/2003,2003/08/11,India,H3N2       
   4 >KF314600,A/India/P035402/2003,2003/07/22,India,H3N2       A..G.CT...C.G.....GC..G........A..........................A.....C..........AG....G..G..A....C...A.GA.T.AG....GT.........AG.A.A.AG.....C..........T.....T.......TTGT......C..T..CCA..G............T.CTCACA..T.A..CC....G...G...T.       59     59 ,     59     59       4:>KF314600,A/India/P035402/2003,2003/07/22,India,H3N2       
   5 >KF314596,A/India/P032261/2003,2003/03/26,India,H3N2       A..G.CT...C.G.....GC..G........A..........................A.....C..........AG....G..G..A....C...A.GA.T.AG....GT.........AG.A.A.AG.....C.........CT.....T.......TTGT......C..T..CCA..--------------------------------------------      137     89 ,     48     45       5:>KF314596,A/India/P032261/2003,2003/03/26,India,H3N2       
   6 >KF314604,A/India/P036689/2003,2003/08/07,India,H3N2       A..G.CT...C.G.....GC..G........A..........................A.....C..........AG....G..G..A....C...A.GA.T.AG....GT.........AG.A.A.AG.....C.........CT.....T.......TTGT......C..T..CCA..G............T.CTCACA..T.A..CCT...G...G...T.       61     61 ,     61     61       6:>KF314604,A/India/P036689/2003,2003/08/07,India,H3N2       
   7 >KF314595,A/India/P031744/2003,2003/03/03,India,H3N2       A..G.CT...C.G.....GC..G........A..........................A....CC..........AG....G..G..A....C...A.GA.T.AG....GT.........AG.A.A.AG.....C.........CT.....T.......TTGT......C..T..CCA..G............T.CTCACA..T.A..CCT...G...G...T.       65     62 ,     63     62       7:>KF314595,A/India/P031744/2003,2003/03/03,India,H3N2       
   8 >KF314453,A/India/D0512577/2004,2004/12/24,India,H3N2      A..G.CT...C.G.....GC..G........A..........................A.....C...A......AG....G..G..A....C...A.GA.T.AG....GT.........AG.A.A.AG.....C.........CT.....T.......TTGT......C..T..CCA..G............T.CTCACA..T.A..CCT...G...G...T.       64     62 ,     62     62       8:>KF314453,A/India/D0512577/2004,2004/12/24,India,H3N2      
   9 >KF314454,A/India/D058683/2005,2005/07/01,India,H3N2       A..G.CT...C.G.....GC..G........A..........................A.....C..........AG....G..G..A....C...A.GA.T.AG....GT.........AG.A.A.AG.....C.........CT.....T.......TTGT......C..T..CCA..G............T.CTCACA..T.A..CCT...G...G...T.       63     61 ,     61     61       9:>KF314454,A/India/D058683/2005,2005/07/01,India,H3N2       
  10 >KF314608,A/India/P031896/2003,2003/03/07,India,H3N2       A..G.CT...C.G.....GC..G........A..........................A.....C......T...AG....G..G..A....C...A.GA.T.AG....GT.........AG.A.A.AG.....C.........CT.....T.......TTGT......C..T..CCA..G......-------------------------------------      119     84 ,     47     47      10:>KF314608,A/India/P031896/2003,2003/03/07,India,H3N2       
  11 >KF314598,A/India/P032699/2003,2003/04/11,India,H3N2       A..G.CT...C.G.....GC..G........A..........................A.....C......T....G....G..G..A....C...A.GA.T.AG....GT.........AG.A.A.AG.....C.........CT.....T.......TTGT......C..T..CCA..G............T.CTCACA..T.A..CCT...G...G...T.       63     61 ,     63     61      11:>KF314598,A/India/P032699/2003,2003/04/11,India,H3N2       
  12 >KF314516,A/India/D0512591/2005,2005/09/02,India,H3N2      -------...C.G.....GC..G........A..........................A.....C...........G....G..G..A....C...A.GA.T.AG....GT.........AG.A.A.AG.....C.........CT.....T.......TTGT......C..T..CCA..G............T.CTCACA..T.A..CCT...G...G..---       82     65 ,     55     55      12:>KF314516,A/India/D0512591/2005,2005/09/02,India,H3N2      
  13 >KF314515,A/India/D0512585/2005,2005/07/30,India,H3N2      -..G.CT...C.G.....GC..G...T....A..........................A.....C...........G....G..G..A....C...A.GA.T.AG....GT.........AG.A.A.AG.....C.........CT.....T.......TTGT......C..T..CCA..G............T.CTCACA..T.A..CCT...G...G...--       65     62 ,     59     59      13:>KF314515,A/India/D0512585/2005,2005/07/30,India,H3N2      
  14 >KF314514,A/India/D0512584/2005,2005/03/25,India,H3N2      -------...C.G.....GC..G........A..........................A.....C...........G....G..G..A....C...A.GA.T.AG....GT.........AG.A.A.AG.....C.........CT.....T.......-----------------------------------------------------------------      178    103 ,     31     31      14:>KF314514,A/India/D0512584/2005,2005/03/25,India,H3N2      
  15 >KF314602,A/India/P035404/2003,2003/07/22,India,H3N2       A..G.CT...C.G.....GC..G......A.A..........................A.....C...........G....G..G..A....C...A.GA.T.AG....GT.........AG.A.A.AG.....C..........T.....T.......TTGT......CG.T..CCA..G............T.CTCACA..T.A..CC....G...G..C..       60     60 ,     60     60      15:>KF314602,A/India/P035404/2003,2003/07/22,India,H3N2       
  16 >KF314601,A/India/P035403/2003,2003/07/22,India,H3N2       A..G.CT...C.G.....GC..G......A.A..........................A.....C...........G....G..G..A....C...A.GA.T.AG....GT.........AG.A.A.AG.....C..........T.....T.......TTGT......CG.T..CCA..G............T.CTCACA..T.A..CC....G...G.....       59     59 ,     59     59      16:>KF314601,A/India/P035403/2003,2003/07/22,India,H3N2       
  17 >AY702454,A/Ind/P/URI/2/2003,2003//,India,H3N2             --------------------------------------------------------------------------------------------------------------T.........AG.A.A.AG.....C..........T.....T..T....TTGT......C..T..CCA..G............T.CTCACA..T.A..CC....G...G.....      269    144 ,     34     34      17:>AY702454,A/Ind/P/URI/2/2003,2003//,India,H3N2             
  18 >AY702452,A/Ind/M/URI/2/2003,2003//,India,H3N2             -------------------------------------------------------------------------------------------------------------GT.........AG.A.A.AG.....C..........T.....T..T....TTGT......C..T..CCA..G............T.CTCACA..T.A..CC....G...G...T.      269    145 ,     36     36      18:>AY702452,A/Ind/M/URI/2/2003,2003//,India,H3N2             
  19 >AY702450,A/Ind/P/URI/3/2003,2003//,India,H3N2             --------------------------------------------------------------------------------------------------------------T.........AG.A.A.AG.....C..........T.....T..T....TTGT......C..T..CCA..G............T.CTCACA..T.A..CC....G...G...T.      270    145 ,     35     35      19:>AY702450,A/Ind/P/URI/3/2003,2003//,India,H3N2             
  20 >AY702451,A/Ind/M/URI/1/2003,2003//,India,H3N2             -------------------------------------------------------------------------------------------------------------GT.........AG.A.A.AG.....C..........T.....T..T....TTGT......C..T..CCA..G............T.CTCACA..T.A..CC....G...G...T.      269    145 ,     36     36      20:>AY702451,A/Ind/M/URI/1/2003,2003//,India,H3N2             
  21 >AY702453,A/Ind/M/Enc/2/2003,2003//,India,H3N2             -------------------------------------------------------------------------------------------------------------GT.........AG.A.A.AG.....C..........T.....T..T....TTGT......C..T..CCA..G............T.CTCACA..T.A..CC....G...G...T.      269    145 ,     36     36      21:>AY702453,A/Ind/M/Enc/2/2003,2003//,India,H3N2             
  22 >AY702449,A/Ind/P/URI/4/2003,2003//,India,H3N2             --------------------------------------------------------------------------------------------------------------T.........AG.A.A.AG.....C..........T.....T..T....TTGT......C.TT..CCA..G............T.CTCACAG.T.A..CC....G...G...T.      273    147 ,     38     37      22:>AY702449,A/Ind/P/URI/4/2003,2003//,India,H3N2             
  23 >KF314607,A/India/P038254/2003,2003/08/25,India,H3N2       A..G.CT...C.G.....GC..G........A....G.....................A.....C...........G....G..G..A....C...A.GA.T.AG....GT.........AG.A.A.AG.....C..........T.....T.......TTGT......C.TT..CCA.---------------------------------------------      138     90 ,     46     45      23:>KF314607,A/India/P038254/2003,2003/08/25,India,H3N2       
  24 >KF314597,A/India/P032698/2003,2003/04/11,India,H3N2       A..G.CT...C.G.....GC..G........A..........................A.....C...........G....G..G..A....C...A.GA.T.AG....GT.........AG.A.A.AG.....C..........T.....T.......TTGT......C..T..CCA..G............T.CTCACA..T.A..CC....G...G...T.       59     58 ,     59     58      24:>KF314597,A/India/P032698/2003,2003/04/11,India,H3N2       
  25 >A/Index_Fujian_reass./2003/06(H3N2)                       A..G.CT...C.G.....GC..G........A..........................A.....C...........G....G..G..A....C...A.GA.T.AG....GT.........AG.A.A.AG.....C..........T.....T.......TTGT......C..T..CCA..G............T.CTCACA..T.A..CC....G...G...T.       58     58 ,     58     58      25:>A/Index_Fujian_reass./2003/06(H3N2)                       
  26 >KF314593,A/India/P03287/2003,2003/01/10,India,H3N2        A..G.CT...C.G.....G...G........A..........................A.....C...........G....G..G..A....C...A.GA.T.AG....GT..G..A...AG.A.A.AG.....C..........T.....T.......TTGT......C..T..CCA..G............T.CTCACA....A..CC....G...G...--       61     59 ,     58     57      26:>KF314593,A/India/P03287/2003,2003/01/10,India,H3N2        
  27 >KF314599,A/India/P032969/2003,2003/04/25,India,H3N2       A..G.CT...C.G.....G...G........A.........C................A.....C..........AG....G..G..A....C...A.GA.T.AG....GT.........AG.A.A.AG.....C.....A....T.....T........TGT......C..T..CC...G............T.CTCACA....A..CC....G...G...--       62     58 ,     60     56      27:>KF314599,A/India/P032969/2003,2003/04/25,India,H3N2       
  28 >1997/11/29,10924,USA,A/NY/503/97                          ..TG.CT...C.G.........G........A..........................A....AC................G..G..A.....A....GA.TAA.....GTC.G......AG.A....G................T.....T........TG.......C.....CC.A..............T.CT.AC..............GC..G.....       53     44 ,     53     44      28:>1997/11/29,10924,USA,A/NY/503/97                          
  29 >2003/04/23,12897,USA,A/NY/214/03                          ..........C...............................................A.....C...................G..A..........GA.........G...G.........A...........................T....T.....T......C.....C...AG............T.CA..C.............A.C........       23     23 ,     23     23      29:>2003/04/23,12897,USA,A/NY/214/03                          
  30 >A/Index_Fujian/2002(H3N2)                                 ..........C...............................................A.....C...................G..A..........GA.........G...G......A..A...........................T..........T......C.....C...AG............T.CA..C...............C........       22     22 ,     22     22      30:>A/Index_Fujian/2002(H3N2)                                 
  31 >KF314603,A/India/P036393/2003,2003/08/04,India,H3N2       ..........C.....................................................C...................G..A...........A.........G..........A..A...............T..T........T..........T......C.....C....G............T.CA..T...............C........       21     20 ,     21     20      31:>KF314603,A/India/P036393/2003,2003/08/04,India,H3N2       
  32 >A/Index_Fujian/USA/2003(H3N2)                             .C........C...............................................A.....C...................G..A..........GA.........G...G......A..A..................T........T..........T......C.....C...AG............T.CA..C........C......C........       26     25 ,     26     25      32:>A/Index_Fujian/USA/2003(H3N2)                             
  33 >KF314594,A/India/P031741/2003,2003/03/03,India,H3N2       .C........C...............................................A.....C...................G..A......T...GA.........G...G......A..A...........................T..........T......C.....C...AG.....G.------------------------------------       90     56 ,     21     20      33:>KF314594,A/India/P031741/2003,2003/03/03,India,H3N2       
  34 >AY702455,A/Ind/P/URI/1/2003,2003//,India,H3N2             --------------------------------------------------------------------------------------------------------------...G......A..A...........................T..T.......T......C.....C...AG.....G......T.CC..C...............C......A.      253    127 ,     18     17      34:>AY702455,A/Ind/P/URI/1/2003,2003//,India,H3N2             
  35 >KF314554,A/India/K089062/2008,2008/07/01,India,H3N2       ...............................................CCC.T........C........A.....C.........C.................T................A.......................................----------------------------------------------------------------      140     74 ,     11     10      35:>KF314554,A/India/K089062/2008,2008/07/01,India,H3N2       
  36 >KF314555,A/India/K089063/2008,2008/07/01,India,H3N2       ...............................................CCC.T........C..............C...........................T................A.......................................----------------------------------------------------------------      139     72 ,     10      8      36:>KF314555,A/India/K089063/2008,2008/07/01,India,H3N2       
  37 >KF314456,A/India/D0914865/2009,2009/03/25,India,H3N2      --------------------------------------------------------------.............C............................................A.............................................----------------------------------------------------------      261    122 ,      2      2      37:>KF314456,A/India/D0914865/2009,2009/03/25,India,H3N2      
  38 >KF314559,A/India/K089064/2008,2008/07/03,India,H3N2       ..........C.................................................C..............C.........C..................................A.......................................----------------------------------------------------------------      136     69 ,      7      5      38:>KF314559,A/India/K089064/2008,2008/07/03,India,H3N2       
  39 >KF314633,A/India/P083698/2008,2008/03/08,India,H3N2       ---------------------------------------------------------------............C................C...........................A....................................................................................................C..      148     67 ,      4      4      39:>KF314633,A/India/P083698/2008,2008/03/08,India,H3N2       
  40 >KF314636,A/India/P083677/2008,2008/03/08,India,H3N2       ................................G...........................C..............C................C...........................A.....................................................................................................--        8      7 ,      5      5      40:>KF314636,A/India/P083677/2008,2008/03/08,India,H3N2       
  41 >KF314634,A/India/P083605/2008,2008/03/08,India,H3N2       ------..........................G...........................C..............C................C...........................A.......................................................................................................       22     11 ,      6      5      41:>KF314634,A/India/P083605/2008,2008/03/08,India,H3N2       
  42 >KF314635,A/India/P083644/2008,2008/03/08,India,H3N2       ................................G...........................C..............C................C...........................A.......................................................................................................        6      5 ,      6      5      42:>KF314635,A/India/P083644/2008,2008/03/08,India,H3N2       
  43 >KF314632,A/India/P083665/2008,2008/03/08,India,H3N2       ------------------------------------------------------------C..............C................C...........................A.....................................................................................................--      143     66 ,      5      4      43:>KF314632,A/India/P083665/2008,2008/03/08,India,H3N2       
  44 >GU323764,A/Kolkata/43/2005,2005/10/,India,H3N2            -------------....G..........................................C..............C............................................A...................................................................................................----       50     21 ,      6      4      44:>GU323764,A/Kolkata/43/2005,2005/10/,India,H3N2            
  45 >KF314440,A/India/C0817309/2008,2008/11/28,India,H3N2      ------------------------------------........................C..............C............................................A...............G...........A...............................--------------------------------------------      171     85 ,      5      5      45:>KF314440,A/India/C0817309/2008,2008/11/28,India,H3N2      
  46 >KF314557,A/India/K0810434/2008,2008/07/02,India,H3N2      ...........A.......A........................................C..............C..............G.............................A.......................................----------------------------------------------------------------      136     70 ,      7      6      46:>KF314557,A/India/K0810434/2008,2008/07/02,India,H3N2      
  47 >KF314417,A/India/C087883/2008,2008/04/29,India,H3N2       ------------------------------------........................C..............C............................................A..........................................-------------------------------------------------------------      203    100 ,      3      3      47:>KF314417,A/India/C087883/2008,2008/04/29,India,H3N2       
  48 >KF314560,A/India/K0810437/2008,2008/07/09,India,H3N2      ...........A................................................C..............C............................................A.............................................................------------------------------------------       92     46 ,      4      4      48:>KF314560,A/India/K0810437/2008,2008/07/09,India,H3N2      
  49 >KF314418,A/India/C087885/2008,2008/05/10,India,H3N2       -----------------...........................................C..............C............................................A......................................-----------------------------------------------------------------      173     85 ,      3      3      49:>KF314418,A/India/C087885/2008,2008/05/10,India,H3N2       
  50 >KF314669,A/India/V0810737/2008,2008/03/06,India,H3N2      ............................................................C..............C............................................A......................................T............................------------------------------------       75     40 ,      4      4      50:>KF314669,A/India/V0810737/2008,2008/03/06,India,H3N2      
  51 >KF314438,A/India/C087884/2008,2008/05/05,India,H3N2       .......................................A....................C..............C............................................A....................................-------------------------------------------------------------------      139     71 ,      4      4      51:>KF314438,A/India/C087884/2008,2008/05/05,India,H3N2       
  52 >KF314458,A/India/D0914869/2009,2009/04/30,India,H3N2      -...........................................................C..............C............................................A............................................................A.....-------------------------------------       80     42 ,      4      4      52:>KF314458,A/India/D0914869/2009,2009/04/30,India,H3N2      
  53 >KF314558,A/India/K0810433/2008,2008/07/02,India,H3N2      -------.....................................................C..A...........C............................................A..............T....................................----------------------------------------------------      133     64 ,      5      5      53:>KF314558,A/India/K0810433/2008,2008/07/02,India,H3N2      
  54 >KF314549,A/India/K089051/2008,2008/06/11,India,H3N2       -...........................................................C..............C............................................A............................................................T.....-------------------------------------       81     42 ,      4      4      54:>KF314549,A/India/K089051/2008,2008/06/11,India,H3N2       
  55 >KF314548,A/India/K089057/2008,2008/06/23,India,H3N2       -...........................................................C..............C......................................G.....A............................................................T.....-------------------------------------       82     43 ,      5      5      55:>KF314548,A/India/K089057/2008,2008/06/23,India,H3N2       
  56 >KF314411,A/India/C087876/2008,2008/03/25,India,H3N2       -...........................................................C..............C......................................G.....A............................................................T.....-------------------------------------       83     43 ,      6      5      56:>KF314411,A/India/C087876/2008,2008/03/25,India,H3N2       
  57 >KF314550,A/India/K089048/2008,2008/05/21,India,H3N2       -...........................................................C..............C......................................G.....A......................................................-------------------------------------------------      105     54 ,      4      4      57:>KF314550,A/India/K089048/2008,2008/05/21,India,H3N2       
  58 >KF314409,A/India/C087873/2008,2008/03/11,India,H3N2       -...........................................................C..............C......................................G.....A.............................................................------------------------------------------       95     47 ,      4      4      58:>KF314409,A/India/C087873/2008,2008/03/11,India,H3N2       
  59 >KF314414,A/India/C087880/2008,2008/03/31,India,H3N2       -...........................................................C..............C.............A..............................A..........................................................---------------------------------------------      101     50 ,      4      4      59:>KF314414,A/India/C087880/2008,2008/03/31,India,H3N2       
  60 >KF314457,A/India/D0914867/2009,2009/03/30,India,H3N2      ...........A.....G..........................................C..............C.............A..............................A..........................................................---------------------------------------------      100     51 ,      6      6      60:>KF314457,A/India/D0914867/2009,2009/03/30,India,H3N2      
  61 >KF314404,A/India/C087867/2008,2008/02/26,India,H3N2       ----------------------------------------------------------------------...................A..............................A..........................................................---------------------------------------------      255    117 ,      3      2      61:>KF314404,A/India/C087867/2008,2008/02/26,India,H3N2       
  62 >KF314415,A/India/C087881/2008,2008/03/31,India,H3N2       ----------------------------------------------------------------------..................................................A..........................................................---------------------------------------------      253    116 ,      1      1      62:>KF314415,A/India/C087881/2008,2008/03/31,India,H3N2       
  63 >KF314400,A/India/C087863/2008,2008/02/07,India,H3N2       ----------------------------------------------------------------------..................................................A..........................................................---------------------------------------------      253    116 ,      1      1      63:>KF314400,A/India/C087863/2008,2008/02/07,India,H3N2       
  64 >GU323766,A/Kolkata/158/2005,2005/12/,India,H3N2           ----------.......................................................A...T..............G...................................A...............G................G...................G.............C............................T...----       50     23 ,     12      9      64:>GU323766,A/Kolkata/158/2005,2005/12/,India,H3N2           
  65 >KF314662,A/India/P076064/2007,2007/07/11,India,H3N2       .................................................................A..................G...................................A...............G...........A..........................-------------------------------------------------      101     54 ,      5      5      65:>KF314662,A/India/P076064/2007,2007/07/11,India,H3N2       
  66 >KF314617,A/India/P077597/2007,2007/07/23,India,H3N2       .................................................................A..................G...................................A...............G...........A.........................................................................--        8      7 ,      5      5      66:>KF314617,A/India/P077597/2007,2007/07/23,India,H3N2       
  67 >KF314620,A/India/P077594/2007,2007/07/23,India,H3N2       .................................................................A..................G...................................A...............G...........A.........................................................................--        8      7 ,      6      5      67:>KF314620,A/India/P077594/2007,2007/07/23,India,H3N2       
  68 >KF314619,A/India/P076178/2007,2007/06/18,India,H3N2       .................................................................A..................G............G......................A...............G...........A.........................................................................--        9      8 ,      6      6      68:>KF314619,A/India/P076178/2007,2007/06/18,India,H3N2       
  69 >KF314621,A/India/P076176/2007,2007/06/18,India,H3N2       .................................................................A..................G...................................A...............G...........A........................................................................C..        6      6 ,      6      6      69:>KF314621,A/India/P076176/2007,2007/06/18,India,H3N2       
  70 >GU323769,A/Kolkata/617/2007,2007/01/,India,H3N2           -------------.......................................................................G...................................A...............G...................................................................................----       52     20 ,     10      3      70:>GU323769,A/Kolkata/617/2007,2007/01/,India,H3N2           
  71 >Index/Brisbane-like/2007                                  ....................................................................................G...................................A.......................................................................................................        2      2 ,      2      2      71:>Index/Brisbane-like/2007                                  
  72 >Index/USA-2007                                            ....................................................................................G...................................A.......................................................................................................        2      2 ,      2      2      72:>Index/USA-2007                                            
  73 >2007/02/06,14278,AUS,A/Brisbane/10/07                     ....................................................................................G...................................A.......................................................................................................        4      2 ,      4      2      73:>2007/02/06,14278,AUS,A/Brisbane/10/07                     
  74 >KF314623,A/India/P0713435/2007,2007/10/05,India,H3N2      ....................................................................................G.....................G.............A...............G.....................................T....................................A..........--        9      8 ,      7      6      74:>KF314623,A/India/P0713435/2007,2007/10/05,India,H3N2      
  75 >KF314618,A/India/P0715484/2007,2007/11/02,India,H3N2      .....................................................A..............................G.....................G.............A...............G.........................................A................................A.......A..--       11     10 ,      8      8      75:>KF314618,A/India/P0715484/2007,2007/11/02,India,H3N2      
  76 >KF314622,A/India/P0715485/2007,2007/11/02,India,H3N2      .....................................................A..............................G.....................G.............A...............G.........................................A................................A.......A..--       13     10 ,     11      8      76:>KF314622,A/India/P0715485/2007,2007/11/02,India,H3N2      
  77 >KF314616,A/India/P0622622/2006,2006/09/19,India,H3N2      ..........C.........................................................................G..................A................A...........................................................--------------------------------------------       94     48 ,      5      4      77:>KF314616,A/India/P0622622/2006,2006/09/19,India,H3N2      
  78 >KF314663,A/India/P0618457/2006,2006/07/24,India,H3N2      ....................................................................................G...................................A........T..................................................................A..T..A.......--------------       36     20 ,      6      6      78:>KF314663,A/India/P0618457/2006,2006/07/24,India,H3N2      
  79 >KF314587,A/India/M0614474/2006,2006/06/14,India,H3N2      ....................................................................................G...................................A........T..................................................................A..T..A.....................        7      6 ,      7      6      79:>KF314587,A/India/M0614474/2006,2006/06/14,India,H3N2      
  80 >KF314664,A/India/P0618976/2006,2006/08/23,India,H3N2      ....................................................................................G...................................A........T..................................................................A..T..A.......--------------       36     20 ,      6      6      80:>KF314664,A/India/P0618976/2006,2006/08/23,India,H3N2      
  81 >KF314546,A/India/K0713778/2007,2007/07/23,India,H3N2      .....................C....T.............................A...........................G..........T........................A...................................................TG......--------------------------------------------      100     52 ,      9      8      81:>KF314546,A/India/K0713778/2007,2007/07/23,India,H3N2      
  82 >KF314410,A/India/C087875/2008,2008/03/26,India,H3N2       ----------------------------------------------------------------------..........T...G...........A.......................A..........................................-------------------------------------------------------------      287    135 ,      4      4      82:>KF314410,A/India/C087875/2008,2008/03/26,India,H3N2       
  83 >KF314405,A/India/C087868/2008,2008/02/26,India,H3N2       ----------------------------------------------------------------------..........T...G...........A.......................A...........A..............................................---------------------------------------------      257    120 ,      5      5      83:>KF314405,A/India/C087868/2008,2008/02/26,India,H3N2       
  84 >KF314408,A/India/C087871/2008,2008/03/08,India,H3N2       ----------------------------------------------------------------------..........T...G...........A.......................A...........A.................................................------------------------------------------      253    117 ,      7      5      84:>KF314408,A/India/C087871/2008,2008/03/08,India,H3N2       
  85 >KF314670,A/India/V0810738/2008,2008/04/10,India,H3N2      ......T...................................................................C..G..T...G...........A.......................A...................................................................------------------------------------       78     43 ,      7      7      85:>KF314670,A/India/V0810738/2008,2008/04/10,India,H3N2      
  86 >KF314668,A/India/V083884/2008,2008/02/19,India,H3N2       -.....T...................................................................C..G..T...G...........A.......................A.....C.............................................................------------------------------------       82     45 ,      8      8      86:>KF314668,A/India/V083884/2008,2008/02/19,India,H3N2       
  87 >KF314667,A/India/V083883/2008,2008/02/11,India,H3N2       -.....T...................................................................C..G..T...G...........A.......................A...................................................................------------------------------------       82     44 ,      8      7      87:>KF314667,A/India/V083883/2008,2008/02/11,India,H3N2       
  88 >KF314416,A/India/C087882/2008,2008/04/29,India,H3N2       ......T...................................................................C..G..T...G...........A.......................A.....................................------------------------------------------------------------------      139     73 ,      7      7      88:>KF314416,A/India/C087882/2008,2008/04/29,India,H3N2       
  89 >KF314403,A/India/C087866/2008,2008/02/07,India,H3N2       -.....T...................................................................C..G..T...G...........A.......................A............................................................T.....-------------------------------------       85     46 ,      8      8      89:>KF314403,A/India/C087866/2008,2008/02/07,India,H3N2       
  90 >KF314535,A/India/D0811475/2008,2008/07/14,India,H3N2      -.........................................................................C..G..T...G..............................................G..................T.------------------------------------------------------------------------      152     79 ,      6      6      90:>KF314535,A/India/D0811475/2008,2008/07/14,India,H3N2      
  91 >KF314455,A/India/D0811474/2008,2008/07/14,India,H3N2      -.........................................................................C..G..T...G..............................................G..................T.......------------------------------------------------------------------      142     73 ,      6      6      91:>KF314455,A/India/D0811474/2008,2008/07/14,India,H3N2      
  92 >Index/32g12f1.c2,42-53                                    ...........................................A................................................................................C......G..................T......................G................AC...................AT.G........C       17     11 ,     17     11      92:>Index/32g12f1.c2,42-53                                    
  93 >KF314553,A/India/K089060/2008,2008/06/30,India,H3N2       ...............................................................A......................................................................................T.........----------------------------------------------------------------      132     66 ,      3      2      93:>KF314553,A/India/K089060/2008,2008/06/30,India,H3N2       
  94 >KF314495,A/India/D1043340/2009,2009/08/10,India,H3N2      --------------------------------------------------------------------..................................................................................T..............................-------------------------------------------      245    112 ,      1      1      94:>KF314495,A/India/D1043340/2009,2009/08/10,India,H3N2      
  95 >GU323771,A/Kolkata/1581/2008,2008/06/,India,H3N2          -----..........................................................A......................................................................................T.............................................................T...T...----       31     13 ,      7      4      95:>GU323771,A/Kolkata/1581/2008,2008/06/,India,H3N2          
  96 >GU323772,A/Kolkata/1730/2008,2008/07/,India,H3N2          ---------...........................................................................G......................................................T..........T..G..........................................................T.......----       44     18 ,      9      5      96:>GU323772,A/Kolkata/1730/2008,2008/07/,India,H3N2          
  97 >KF314509,A/India/D0815953/2008,2008/07/15,India,H3N2      ------------------------------------................................................G.....C........................................G..................T.......------------------------------------------------------------------      211    106 ,      4      4      97:>KF314509,A/India/D0815953/2008,2008/07/15,India,H3N2      
  98 >KF314422,A/India/C0817294/2008,2008/11/10,India,H3N2      ------------------------------------------------------..............................G.....C........................................G..................T......-------------------------------------------------------------------      254    125 ,      4      4      98:>KF314422,A/India/C0817294/2008,2008/11/10,India,H3N2      
  99 >Index/32g12f1.c2,55-62                                    ...........................................A......C......G............................................................................................T................G...................C..AC..T......G.....G....T..........C       15     13 ,     15     13      99:>Index/32g12f1.c2,55-62                                    
 100 >Index/H3N3-2011-reassortedEI/2011(H3N2)                   ......................................................................................................................................................T.......................................AC..T.................T..........C        6      6 ,      6      6     100:>Index/H3N3-2011-reassortedEI/2011(H3N2)                   
 101 >KF314672,A/India/V103701/2009,2009/03/16,India,H3N2       -..................................................T...........................................................................................A......T.....................................------------------------------------       77     40 ,      3      3     101:>KF314672,A/India/V103701/2009,2009/03/16,India,H3N2       
 102 >Index/2009/Egypt-Iowa+NA,2009//                           ......................................................................................................................................................T.......................................AC....................T..........C        5      5 ,      5      5     102:>Index/2009/Egypt-Iowa+NA,2009//                           
 103 >KF314624,A/India/P0929642/2009,2009/10/02,India,H3N2      -....................................A......................................................................T................T.......A................T....................................-------------------------------------       81     43 ,      6      5     103:>KF314624,A/India/P0929642/2009,2009/10/02,India,H3N2      
 104 >KF314427,A/India/C117499/2010,2010/10/01,India,H3N2       .......................................................A.....................................................................T.......A................T................C....................------------------------------------       74     41 ,      5      5     104:>KF314427,A/India/C117499/2010,2010/10/01,India,H3N2       
 105 >KF314577,A/India/K1112691/2011,2011/05/25,India,H3N2      .......................................................A.....................................................................T.......A................T.....................................------------------------------------       74     40 ,      5      4     105:>KF314577,A/India/K1112691/2011,2011/05/25,India,H3N2      
 106 >KF314429,A/India/C117523/2010,2010/12/13,India,H3N2       .......................................................A...........................................................A.........T.......A................T.....................................------------------------------------       74     41 ,      5      5     106:>KF314429,A/India/C117523/2010,2010/12/13,India,H3N2       
 107 >KF314653,A/India/P119971/2011,2011/06/21,India,H3N2       .......................................................A...........................................................A.........T.......A................T..............C......................------------------------------------       75     42 ,      6      6     107:>KF314653,A/India/P119971/2011,2011/06/21,India,H3N2       
 108 >KF314432,A/India/C117510/2010,2010/10/25,India,H3N2       ..........C........................G...................A...........................................................A.........T.......A................T..............................-------------------------------------------       94     50 ,      7      7     108:>KF314432,A/India/C117510/2010,2010/10/25,India,H3N2       
 109 >KF314430,A/India/C117531/2010,2010/12/27,India,H3N2       ..........C........................G...................A...........................................................A.........T.......A................T............A........................------------------------------------       77     44 ,      8      8     109:>KF314430,A/India/C117531/2010,2010/12/27,India,H3N2       
 110 >KF314452,A/India/C0117492/2010,2010/09/02,India,H3N2      ..........C........................G...................A...........................................................A.........T.......A................T............A........----------------------------------------------------      112     60 ,      8      8     110:>KF314452,A/India/C0117492/2010,2010/09/02,India,H3N2      
 111 >KF314426,A/India/C117493/2010,2010/09/06,India,H3N2       ..........C........................G...................A...........................................................A.........T.......A................T............A........................------------------------------------       77     44 ,      8      8     111:>KF314426,A/India/C117493/2010,2010/09/06,India,H3N2       
 112 >KF314435,A/India/C117532/2010,2010/12/27,India,H3N2       ..........C........................G...................A................AG.........................................A.........T.......A................T............A........................------------------------------------       80     46 ,     11     10     112:>KF314435,A/India/C117532/2010,2010/12/27,India,H3N2       
 113 >KF314434,A/India/C117521/2010,2010/12/06,India,H3N2       ..........C........................G...................A................AG.........................................A.........T.......A................T............A.................-------------------------------------------       97     53 ,     10     10     113:>KF314434,A/India/C117521/2010,2010/12/06,India,H3N2       
 114 >KF314433,A/India/C117518/2010,2010/11/30,India,H3N2       ..........C........................G.........C.........A................AG.........................................A.........T.......A................T............A........................------------------------------------       80     47 ,     11     11     114:>KF314433,A/India/C117518/2010,2010/11/30,India,H3N2       
 115 >KF314428,A/India/C117516/2010,2010/11/24,India,H3N2       ..........C........................G...................A...........................................................A.........T.......A................T............A.........................-----------------------------------       73     43 ,      8      8     115:>KF314428,A/India/C117516/2010,2010/11/24,India,H3N2       
 116 >KF314651,A/India/P1033404/2010,2010/10/18,India,H3N2      ...................................G...................A..........GC...............................................A.........T.......A................T............A..................------------------------------------------       96     51 ,     10      9     116:>KF314651,A/India/P1033404/2010,2010/10/18,India,H3N2      
 117 >KF314649,A/India/P1019858/2010,2010/08/06,India,H3N2      ...................................G...................A.................................A.........................A.........T.......A................T............A..................------------------------------------------       95     50 ,      8      8     117:>KF314649,A/India/P1019858/2010,2010/08/06,India,H3N2      
 118 >KF314648,A/India/P1025246/2010,2010/08/03,India,H3N2      ...................................G...................A.................................A.........................A.........T.......A................T............A..................------------------------------------------       94     50 ,      8      8     118:>KF314648,A/India/P1025246/2010,2010/08/03,India,H3N2      
 119 >KF314665,A/India/P1033310/2010,2010/10/18,India,H3N2      ...................................G...................A...........................................................A.........T.......A................T............A..................------------------------------------------       93     49 ,      7      7     119:>KF314665,A/India/P1033310/2010,2010/10/18,India,H3N2      
 120 >KF314650,A/India/P1034078/2010,2010/10/25,India,H3N2      ...................................G...................A...........................................................A.........T.......A................T............A.................-------------------------------------------       98     50 ,      9      7     120:>KF314650,A/India/P1034078/2010,2010/10/25,India,H3N2      
 121 >KF314652,A/India/P1033372/2010,2010/10/18,India,H3N2      ...................................G...................A...........................................................A.........T.......A................T............A.................-------------------------------------------       94     50 ,      7      7     121:>KF314652,A/India/P1033372/2010,2010/10/18,India,H3N2      
 122 >KF314544,A/India/KL1053114/2010,2010/07/15,India,H3N2     ...................................G...................A...........................................................A.........T.......A................T............A..........--------------------------------------------------      106     57 ,      7      7     122:>KF314544,A/India/KL1053114/2010,2010/07/15,India,H3N2     
 123 >Index/H3N2-2011-normalEI/2011(H3N2)                       ...................................G...................A...........................................................A.........T.......A................T............A.........................AAC..............A.....T..........C       14     13 ,     14     13     123:>Index/H3N2-2011-normalEI/2011(H3N2)                       
 124 >A/Czech Republic/121/2012,2012/03/06,Czech Republic       ..................................................C....A...G..C...............................T...G..........................T.......A...............AT......................................AAC...............G....T..........C       17     16 ,     17     16     124:>A/Czech Republic/121/2012,2012/03/06,Czech Republic       
 125 >Index/32g12f1.c2,38-41                                    ..................................................C....A...G..C...............................T...G..........................T.......A...............AT.......C..............................AAC...............G....T..........C       18     17 ,     18     17     125:>Index/32g12f1.c2,38-41                                    
 126 >Index/32g12f1.c2,10-37                                    ..................................................C....A...G..C...............................T...G..........................T.......A...............AT.......C..............................AAC......T........G....T..........C       19     18 ,     19     18     126:>Index/32g12f1.c2,10-37                                    
 127 >KF314654,A/India/P1110067/2011,2011/06/24,India,H3N2      ..................................................C....A......................................TT.............................T.......A................T..............C.......................-----------------------------------       74     43 ,      9      8     127:>KF314654,A/India/P1110067/2011,2011/06/24,India,H3N2      
 128 >KF314506,A/India/D1115596/2011,2011/07/25,India,H3N2      ..................................................C....A......................................TT.............................T.......A................T..............-----------------------------------------------------------      127     66 ,      7      7     128:>KF314506,A/India/D1115596/2011,2011/07/25,India,H3N2      
 129 >KF314539,A/India/Dib1113502/2011,2011/07/08,India,H3N2    ..................................................C....A.............A........................TT.............................T.......A................T..............C......----------------------------------------------------      114     61 ,     10      9     129:>KF314539,A/India/Dib1113502/2011,2011/07/08,India,H3N2    
 130 >KF314656,A/India/P1112622/2011,2011/08/04,India,H3N2      ..................................................C....A........................T.............TT.............................T.......A................T.....................----------------------------------------------------      115     60 ,      8      8     130:>KF314656,A/India/P1112622/2011,2011/08/04,India,H3N2      
 131 >KF314658,A/India/P1113591/2011,2011/07/29,India,H3N2      ..................................................C....A........................T.............TT.............................T.......A................T..............................-------------------------------------------       95     51 ,      8      8     131:>KF314658,A/India/P1113591/2011,2011/07/29,India,H3N2      
 132 >KF314505,A/India/D1115594/2011,2011/07/19,India,H3N2      ..................................................C....A........................T.............TT.............................T.......A................T...............................------------------------------------------       94     50 ,      8      8     132:>KF314505,A/India/D1115594/2011,2011/07/19,India,H3N2      
 133 >KF314504,A/India/D1115590/2011,2011/07/08,India,H3N2      ..................................................C....A........................T........A....TT.............................T.......A................T..............-----------------------------------------------------------      129     68 ,      9      9     133:>KF314504,A/India/D1115590/2011,2011/07/08,India,H3N2      
 134 >KF314508,A/India/D1115592/2011,2011/07/13,India,H3N2      ..................................................C....A........................T........A....TT.............................T.......A................T..............C......................------------------------------------       79     46 ,     10     10     134:>KF314508,A/India/D1115592/2011,2011/07/13,India,H3N2      
 135 >KF314657,A/India/P1112646/2011,2011/08/03,India,H3N2      ..................................................C....A........................T........A....TT......................A......T.......A................T..............C......................------------------------------------       81     47 ,     12     11     135:>KF314657,A/India/P1112646/2011,2011/08/03,India,H3N2      
 136 >KF314659,A/India/P1112647/2011,2011/08/04,India,H3N2      ..................................................C....A........................T.............TT......................A......T.......A................T..............C......................------------------------------------       79     46 ,     10     10     136:>KF314659,A/India/P1112647/2011,2011/08/04,India,H3N2      
 137 >KF314578,A/India/K1112693/2011,2011/05/31,India,H3N2      ..................................................C....A........................T.............TT.............................T.......A................T..............C.......................-----------------------------------       77     44 ,      9      9     137:>KF314578,A/India/K1112693/2011,2011/05/31,India,H3N2      
 138 >KF314538,A/India/Dib1113488/2011,2011/06/28,India,H3N2    ..................................................C....A........................T.....T.......TT.............................T.......A................T..............C.......................-----------------------------------       78     45 ,     11     10     138:>KF314538,A/India/Dib1113488/2011,2011/06/28,India,H3N2    
 139 >KF314540,A/India/Dib1113493/2011,2011/07/04,India,H3N2    ..................................................C....A........................T.............TT.........T...................T.......A..........A.....T..............C.......................-----------------------------------       77     46 ,     11     11     139:>KF314540,A/India/Dib1113493/2011,2011/07/04,India,H3N2    
 140 >KF314584,A/India/Lkw1113814/2011,2011/07/29,India,H3N2    ..................................................C....A........................T.............TT.............................T.......A................T..............C......................------------------------------------       78     45 ,      9      9     140:>KF314584,A/India/Lkw1113814/2011,2011/07/29,India,H3N2    
 141 >KF314585,A/India/Lkw1113815/2011,2011/07/29,India,H3N2    ..................................................C....A........................T.............TT.............................T.......A......A.........T..............C......................------------------------------------       79     46 ,     10     10     141:>KF314585,A/India/Lkw1113815/2011,2011/07/29,India,H3N2    
 142 >KF668212,A/India/LKO856/2011,2011/07/28,India,H3N2        --------------------------------------------------------------------------......T.............TT.............................T.......A......A.........T..............C.......................AAC............--------------------      218    105 ,     11     11     142:>KF668212,A/India/LKO856/2011,2011/07/28,India,H3N2        
 143 >KF668208,A/India/LKO799/2011,2011/07/16,India,H3N2        --------------------------------------------------------------------------......T.............TT.............................T.......A................T......T.......C.......................AAC............G..G.---------------      213    102 ,     13     13     143:>KF668208,A/India/LKO799/2011,2011/07/16,India,H3N2        
 144 >KF668209,A/India/LKO827/2011,2011/07/25,India,H3N2        ------------------------------------------------------------------------------..T.............TT.............................T.......A................T......T.......C.......................AAC............--------------------      224    109 ,     11     11     144:>KF668209,A/India/LKO827/2011,2011/07/25,India,H3N2        
 145 >KF668216,A/India/LKO940/2011,2011/08/11,India,H3N2        ---------------------------------------------------------------------------------.............TT.............................T.......A................T......T.......C.......................AAC............--------------------      227    111 ,     10     10     145:>KF668216,A/India/LKO940/2011,2011/08/11,India,H3N2        
 146 >KF668210,A/India/LKO845/2011,2011/07/26,India,H3N2        --------------------------------------------------------------------------......T.............TT.............................T.......A................T......T.......C.......................AAC............G..G.---------------      213    102 ,     13     13     146:>KF668210,A/India/LKO845/2011,2011/07/26,India,H3N2        
 147 >KF668214,A/India/LKO871/2011,2011/07/29,India,H3N2        ------------------------------------------------------------------------------..T.............TT.............................T.......A................T......T.......C.......................AAC............--------------------      224    109 ,     11     11     147:>KF668214,A/India/LKO871/2011,2011/07/29,India,H3N2        
 148 >KF668219,A/India/LKO1501/2012,2012/02/14,India,H3N2       ------------------------------------------------------------------------------------..........TT.............................T.......A................T......T.......C.......................AAC............--------------------      232    114 ,     10     10     148:>KF668219,A/India/LKO1501/2012,2012/02/14,India,H3N2       
 149 >KF668220,A/India/LKO3108/2012,2012/12/12,India,H3N2       ---------------------------------------------------------------------------------..G.....R....TT.............................T.......A................T......T.......C.......................AAC............G..G.---------------      224    110 ,     14     14     149:>KF668220,A/India/LKO3108/2012,2012/12/12,India,H3N2       
 150 >KF668215,A/India/LKO896/2011,2011/08/03,India,H3N2        --------------------------------------------------------------------------......T.............TT.............................T.......A................T......T.......C.......................AAC............G..G----------------      214    103 ,     13     13     150:>KF668215,A/India/LKO896/2011,2011/08/03,India,H3N2        
 151 >KF668218,A/India/LKO1442/2012,2012/01/23,India,H3N2       ---------------------------------------------------------------------------.....T.............TT.............................T.......A................T......T.......C.......................AAC............--------------------      220    106 ,     11     11     151:>KF668218,A/India/LKO1442/2012,2012/01/23,India,H3N2       
 152 >KF314655,A/India/P1112494/2011,2011/08/02,India,H3N2      ..................................................C....AA.......................T.............TT.............................T.......A................T..............C......................------------------------------------       80     46 ,     11     10     152:>KF314655,A/India/P1112494/2011,2011/08/02,India,H3N2      
 153 >KF668213,A/India/LKO864/2011,2011/07/28,India,H3N2        ---------------------------------------------------------------------------.....T.............TT.............................T.......A................T..............C.......................AAC...............G.---------------      213    101 ,     11     11     153:>KF668213,A/India/LKO864/2011,2011/07/28,India,H3N2        
 154 >KF314586,A/India/Lkw1112449/2011,2011/07/15,India,H3N2    ..................................................C....A........................T.............TT.............................T.......A................T..............C......................------------------------------------       81     45 ,     12      9     154:>KF314586,A/India/Lkw1112449/2011,2011/07/15,India,H3N2    
 155 >KF668217,A/India/LKO983/2011,2011/08/25,India,H3N2        --------------------------------------------------------------------------......T.............TT.............................T.......A................T..............C.......................AAC............G..G----------------      213    102 ,     12     12     155:>KF668217,A/India/LKO983/2011,2011/08/25,India,H3N2        
 156 >KF314507,A/India/D1115598/2011,2011/07/25,India,H3N2      A.................................................C....A........................T........A....TT.............................T.......A................T..............C..............--------------------------------------------      101     55 ,     12     11     156:>KF314507,A/India/D1115598/2011,2011/07/25,India,H3N2      
 157 >KF668211,A/India/LKO851/2011,2011/07/27,India,H3N2        ---------------------------------------------------------------------------.....T.............TT.............................T.......A................T..............C.......................AAC...............G....------------      207     98 ,     11     11     157:>KF668211,A/India/LKO851/2011,2011/07/27,India,H3N2        
 158 >KF668225,A/India/LKO3863/2013,2013/07/06,India,H3N2       -----------------------------------------------------------------------------...T..........T..TT.............................T.......A...T............T.............CC.......................AAC...............G.---------------      219    106 ,     14     14     158:>KF668225,A/India/LKO3863/2013,2013/07/06,India,H3N2       
 159 >KF668224,A/India/LKO3839/2013,2013/06/29,India,H3N2       ---------------------------------------------------------------------------.....T..........T..TT.............................T.......A...T............T..............CG......................AAC...............G.---------------      216    104 ,     15     14     159:>KF668224,A/India/LKO3839/2013,2013/06/29,India,H3N2       
 160 >KF668223,A/India/LKO3825/2013,2013/06/26,India,H3N2       --------------------------------------------------------------------------......T..........T..TT.................G...........T.......A...T............T..............CG......................AAC...............G.---------------      215    104 ,     15     15     160:>KF668223,A/India/LKO3825/2013,2013/06/26,India,H3N2       
 161 >KF668228,A/India/LKO3889/2013,2013/07/11,India,H3N2       --------------------------------------------------------------------------......T..........T..TT.............................T.......A...T............T....G.........CG......................AAC...............G.---------------      216    104 ,     16     15     161:>KF668228,A/India/LKO3889/2013,2013/07/11,India,H3N2       
 162 >KF668227,A/India/LKO3887/2013,2013/07/10,India,H3N2       ---------------------------------------------------------------------------.....T..........T..TT.............................T.......A...T............T..............CG......................AAC...............G.---------------      217    104 ,     16     14     162:>KF668227,A/India/LKO3887/2013,2013/07/10,India,H3N2       
 163 >KF668226,A/India/LKO3876/2013,2013/07/09,India,H3N2       -----------------------------------------------------------------------------...T..........T..TT.............................T.......A...T............T..............CG......................AAC...............G.---------------      219    106 ,     14     14     163:>KF668226,A/India/LKO3876/2013,2013/07/09,India,H3N2       
 164 >KF668232,A/India/LKO3914/2013,2013/07/16,India,H3N2       ---------------------------------------------------------------------------------------....T..TT.............................T.......A...T............T..............CG......................AAC...............G.---------------      235    115 ,     13     13     164:>KF668232,A/India/LKO3914/2013,2013/07/16,India,H3N2       
 165 >KF668222,A/India/LKO3824/2013,2013/06/26,India,H3N2       ----------------------------------------------------------------------------------------------TT.....T.......................T.......A...T............T..............CG......................AAC...............G.---------------      247    122 ,     13     13     165:>KF668222,A/India/LKO3824/2013,2013/06/26,India,H3N2       
 166 >KF668221,A/India/LKO3818/2013,2013/06/25,India,H3N2       ---------------------------------------------------------------------------------------....T..TT.....T.......................T.......A...T............T..............CG......................AAC...............G.---------------      236    116 ,     14     14     166:>KF668221,A/India/LKO3818/2013,2013/06/25,India,H3N2       
 167 >KF668231,A/India/LKO3913/2013,2013/07/16,India,H3N2       --------------------------------------------------------------------------------T..........T..TT.............................T.......A...T............T..............CG......................AAC...............G.---------------      223    109 ,     14     14     167:>KF668231,A/India/LKO3913/2013,2013/07/16,India,H3N2       
 168 >KF668230,A/India/LKO3906/2013,2013/07/15,India,H3N2       ---------------------------------------------------------------------------------..........T..TT.............................T.......A...T............T..............CG...........A..........AAC...............G.---------------      224    110 ,     14     14     168:>KF668230,A/India/LKO3906/2013,2013/07/15,India,H3N2       
 169 >KF668229,A/India/LKO3893/2013,2013/07/12,India,H3N2       ---------------------------------------------------------------------------------..........T..TT.............................T.......A...T............T..............CG...........A..........AAC.............-------------------      230    113 ,     14     13     169:>KF668229,A/India/LKO3893/2013,2013/07/12,India,H3N2       
 170 >KF314674,A/India/V1039867/2009,2009/08/27,India,H3N2      .......CC.C...A.....G.........................................................G...............T....................................................................-------------------------------------------------------------      134     68 ,      9      7     170:>KF314674,A/India/V1039867/2009,2009/08/27,India,H3N2      
 171 >KF314647,A/India/P0956494/2009,2009/08/09,India,H3N2      -------------------------.......G.............................................................T...........................................................................G.................------------------------------------      127     64 ,      3      3     171:>KF314647,A/India/P0956494/2009,2009/08/09,India,H3N2      
 172 >KF314485,A/India/D1043336/2009,2009/07/29,India,H3N2      ------------------------------------..........................................................T................................................................G...................---------------------------------------------      171     83 ,      2      2     172:>KF314485,A/India/D1043336/2009,2009/07/29,India,H3N2      
 173 >KF314646,A/India/P0956497/2009,2009/08/09,India,H3N2      -------------------------------------.........................................................T................................................................T............................------------------------------------      153     75 ,      2      2     173:>KF314646,A/India/P0956497/2009,2009/08/09,India,H3N2      
 174 >KF314475,A/India/D0942716/2009,2009/07/16,India,H3N2      .......CC.C.........G.....................................................................G...T................................................................T.................A..........------------------------------------       77     44 ,      8      8     174:>KF314475,A/India/D0942716/2009,2009/07/16,India,H3N2      
 175 >KF314533,A/India/D0920483/2009,2009/07/06,India,H3N2      .......CC.C.........G.........................................................................T..............................................................................---------------------------------------------------      108     56 ,      5      5     175:>KF314533,A/India/D0920483/2009,2009/07/06,India,H3N2      
 176 >KF314503,A/India/D1043355/2009,2009/09/18,India,H3N2      -......CC.C.........G.........................................................................T...................G..................................................................T.....-------------------------------------       84     45 ,      7      7     176:>KF314503,A/India/D1043355/2009,2009/09/18,India,H3N2      
 177 >KF314628,A/India/P0913594/2009,2009/07/21,India,H3N2      -......CC.C.........G........................................G................................T....................................................................................---------------------------------------------      103     52 ,      6      6     177:>KF314628,A/India/P0913594/2009,2009/07/21,India,H3N2      
 178 >KF314524,A/India/D0942724/2009,2009/07/25,India,H3N2      .......CC.C.........G.........................................................................T.............................................................................................------------------------------------       74     41 ,      5      5     178:>KF314524,A/India/D0942724/2009,2009/07/25,India,H3N2      
 179 >KF314639,A/India/P0955932/2009,2009/08/06,India,H3N2      --------------------------------------------------......A.....................................T............................................................G.................................-----------------------------------      180     88 ,      4      3     179:>KF314639,A/India/P0955932/2009,2009/08/06,India,H3N2      
 180 >KF314528,A/India/D0942709/2009,2009/06/19,India,H3N2      .......CC.C.........G.........................................................................T.............................................................................................------------------------------------       74     41 ,      5      5     180:>KF314528,A/India/D0942709/2009,2009/06/19,India,H3N2      
 181 >KF314462,A/India/D0914873/2009,2009/05/11,India,H3N2      -......CC.C.........G.........................................................................T..............................................................................................-----------------------------------       78     41 ,      6      5     181:>KF314462,A/India/D0914873/2009,2009/05/11,India,H3N2      
 182 >KF314530,A/India/D0942751/2009,2009/08/18,India,H3N2      .......CC.C.........G.........................................................................T.............................................................................................------------------------------------       74     41 ,      5      5     182:>KF314530,A/India/D0942751/2009,2009/08/18,India,H3N2      
 183 >KF314625,A/India/P0923277/2009,2009/09/15,India,H3N2      .......CC.C.........G.........................................................................T....................................................................................---------------------------------------------       98     50 ,      6      5     183:>KF314625,A/India/P0923277/2009,2009/09/15,India,H3N2      
 184 >KF314522,A/India/D0942749/2009,2009/08/17,India,H3N2      .......CC.C.........G.........................................................................T..............................................................................---------------------------------------------------      105     56 ,      5      5     184:>KF314522,A/India/D0942749/2009,2009/08/17,India,H3N2      
 185 >KF314497,A/India/D0942745/2009,2009/08/13,India,H3N2      -......CC.C.........G.........................................................................T....................................................................................---------------------------------------------      102     51 ,      5      5     185:>KF314497,A/India/D0942745/2009,2009/08/13,India,H3N2      
 186 >KF314525,A/India/D0942743/2009,2009/08/08,India,H3N2      ---....CC.C.........G.........................................................................T.............................................................................----------------------------------------------------      119     60 ,      5      5     186:>KF314525,A/India/D0942743/2009,2009/08/08,India,H3N2      
 187 >KF314523,A/India/D0942750/2009,2009/08/18,India,H3N2      .......CC.C.........G.........................................................................T..............................................................................---------------------------------------------------      105     56 ,      5      5     187:>KF314523,A/India/D0942750/2009,2009/08/18,India,H3N2      
 188 >KF314470,A/India/D0942711/2009,2009/06/30,India,H3N2      .......CC.C.........G.........................................................................T..........................................................................................---------------------------------------       86     44 ,      5      5     188:>KF314470,A/India/D0942711/2009,2009/06/30,India,H3N2      
 189 >KF314467,A/India/D0942706/2009,2009/05/02,India,H3N2      .......CC.C.........G..................................A......................................T..................................................................................-----------------------------------------------      100     53 ,      6      6     189:>KF314467,A/India/D0942706/2009,2009/05/02,India,H3N2      
 190 >KF314493,A/India/D0942736/2009,2009/08/06,India,H3N2      .......CC.C.........G..................................A..........................A.......................................................C........A................------------------------------------------------------------      129     68 ,      8      8     190:>KF314493,A/India/D0942736/2009,2009/08/06,India,H3N2      
 191 >KF314489,A/India/D0942732/2009,2009/08/03,India,H3N2      .............................................................G....................A.......................................................C........A.........A..........T..........CG.....G.------------------------------------       80     45 ,      9      9     191:>KF314489,A/India/D0942732/2009,2009/08/03,India,H3N2      
 192 >KF314487,A/India/D0942730/2009,2009/08/03,India,H3N2      .............................................................G....................A...........................................C...........C........A.........A..........T...........G.....G.------------------------------------       82     45 ,     11      9     192:>KF314487,A/India/D0942730/2009,2009/08/03,India,H3N2      
 193 >KC428627,A/Calicut/MPLSF-071/2009,2009/08/16,India,H3N2   ..........C.....................................A............G....................A..........................................................................A......CC..............G.....G.....................................       10      9 ,     10      9     193:>KC428627,A/Calicut/MPLSF-071/2009,2009/08/16,India,H3N2   
 194 >KF314678,A/India/V1039869/2009,2009/08/31,India,H3N2      ---------------------........................................G....................A..........................................................................A.......C..............G.....G.------------------------------------      124     63 ,      6      6     194:>KF314678,A/India/V1039869/2009,2009/08/31,India,H3N2      
 195 >Index/Perth-like/2009                                     .............................................................G....................A..........................................................................A......................G.....G.....................................        5      5 ,      5      5     195:>Index/Perth-like/2009                                     
 196 >KF314631,A/India/P0943044/2009,2009/08/12,India,H3N2      -.....................................................................................T............................................................................................---------------------------------------------       97     47 ,      1      1     196:>KF314631,A/India/P0943044/2009,2009/08/12,India,H3N2      
 197 >KF314682,A/India/V103703/2009,2009/10/13,India,H3N2       ------------------------------------------------------......................................................................................................................................------------------------------------      186     90 ,      0      0     197:>KF314682,A/India/V103703/2009,2009/10/13,India,H3N2       
 198 >KF314675,A/India/V1039870/2009,2009/08/18,India,H3N2      --.....CC.C...A.....G.............................C...........................................T.............................................................................................------------------------------------       84     45 ,      9      7     198:>KF314675,A/India/V1039870/2009,2009/08/18,India,H3N2      
 199 >KF314536,A/India/DIB105762/2009,2009/10/23,India,H3N2     ------------------------------------.........................................G................T.............................................................................................------------------------------------      148     74 ,      2      2     199:>KF314536,A/India/DIB105762/2009,2009/10/23,India,H3N2     
 200 >KF314673,A/India/V103702/2009,2009/06/17,India,H3N2       .......CC.C.........G........................................................G................T.............................................................................................------------------------------------       79     42 ,      8      6     200:>KF314673,A/India/V103702/2009,2009/06/17,India,H3N2       
 201 >KF314483,A/India/D0942726/2009,2009/07/27,India,H3N2      .......CC.C.........G.........................................................................T.............................................................................................------------------------------------       76     41 ,      5      5     201:>KF314483,A/India/D0942726/2009,2009/07/27,India,H3N2      
 202 >KF314529,A/India/D0942729/2009,2009/08/03,India,H3N2      .......CC.C.........G.........................................................................T.............................................................................................------------------------------------       74     41 ,      5      5     202:>KF314529,A/India/D0942729/2009,2009/08/03,India,H3N2      
 203 >KF314474,A/India/D0942715/2009,2009/07/16,India,H3N2      .......CC.C.........G.........................................................................T...................................................C..........................---------------------------------------------------      106     57 ,      6      6     203:>KF314474,A/India/D0942715/2009,2009/07/16,India,H3N2      
 204 >KF314473,A/India/D0942714/2009,2009/07/16,India,H3N2      -......CC.C.........G.........................................................................T...................................................C.........................................------------------------------------       80     43 ,      6      6     204:>KF314473,A/India/D0942714/2009,2009/07/16,India,H3N2      
 205 >KF314472,A/India/D0942713/2009,2009/07/16,India,H3N2      .......CC.C.........G...........G.........................................................G...T...................................................C.........................................------------------------------------       77     44 ,      8      8     205:>KF314472,A/India/D0942713/2009,2009/07/16,India,H3N2      
 206 >KF314492,A/India/D0942739/2009,2009/08/06,India,H3N2      .......CC.C.........G........T............................................................G...T..........................................................................C...............G..G-----------------------------------       76     45 ,     11     10     206:>KF314492,A/India/D0942739/2009,2009/08/06,India,H3N2      
 207 >KF314644,A/India/P0956287/2009,2009/08/08,India,H3N2      -------------------------------------.........................................................T..........................................................................................G..G-----------------------------------      150     75 ,      3      3     207:>KF314644,A/India/P0956287/2009,2009/08/08,India,H3N2      
 208 >KF314461,A/India/D0914872/2009,2009/05/08,India,H3N2      -......CC.C.........G.......G.................................................................T....................................................................................---------------------------------------------      103     52 ,      6      6     208:>KF314461,A/India/D0914872/2009,2009/05/08,India,H3N2      
 209 >KF314642,A/India/P0956278/2009,2009/08/08,India,H3N2      ---------------------------------------.......................................................T........................................................................................A....G-----------------------------------      156     77 ,      6      3     209:>KF314642,A/India/P0956278/2009,2009/08/08,India,H3N2      
 210 >KF314527,A/India/D0942740/2009,2009/08/06,India,H3N2      .......CC.C.........G.........................................................................T......................................................................................-------------------------------------------       92     48 ,      5      5     210:>KF314527,A/India/D0942740/2009,2009/08/06,India,H3N2      
 211 >KF314521,A/India/D0942746/2009,2009/08/13,India,H3N2      ----...CC.C.........G.........................................................................T..............................................................................---------------------------------------------------      115     60 ,      5      5     211:>KF314521,A/India/D0942746/2009,2009/08/13,India,H3N2      
 212 >KF314501,A/India/D0942754/2009,2009/08/20,India,H3N2      .C.....CC.C.........G....................................................................A....T.....................................................A.......................................------------------------------------       78     44 ,      9      8     212:>KF314501,A/India/D0942754/2009,2009/08/20,India,H3N2      
 213 >KF314469,A/India/D0942710/2009,2009/06/19,India,H3N2      .......CC.C.........G....................................................................A....T.............................................................................................------------------------------------       75     42 ,      6      6     213:>KF314469,A/India/D0942710/2009,2009/06/19,India,H3N2      
 214 >KF314466,A/India/D0914878/2009,2009/06/27,India,H3N2      .......CC.C.........GCC..................................................................A....T................................................A..............................--------------------------------------------------      110     59 ,     10      9     214:>KF314466,A/India/D0914878/2009,2009/06/27,India,H3N2      
 215 >KF314637,A/India/P0955938/2009,2009/08/06,India,H3N2      --------------------------------------........................................................T....................................................................................C--------------------------------------------      175     84 ,      3      2     215:>KF314637,A/India/P0955938/2009,2009/08/06,India,H3N2      
 216 >KF314534,A/India/D0920484/2009,2009/07/06,India,H3N2      .......CC.C.........G.........................................................................T..............................................................................---------------------------------------------------      105     56 ,      5      5     216:>KF314534,A/India/D0920484/2009,2009/07/06,India,H3N2      
 217 >KF314520,A/India/D0942735/2009,2009/08/04,India,H3N2      .......CC.C.........G.........................................................................T.......................................................................................------------------------------------------       91     47 ,      5      5     217:>KF314520,A/India/D0942735/2009,2009/08/04,India,H3N2      
 218 >KF314526,A/India/D0942737/2009,2009/08/06,India,H3N2      -......CC.C.........G.........................................................................T..............................................................................---------------------------------------------------      110     57 ,      5      5     218:>KF314526,A/India/D0942737/2009,2009/08/06,India,H3N2      
 219 >KF314532,A/India/D0920482/2009,2009/07/06,India,H3N2      .......CC.C.........G.........................................................................T............................................................................-----------------------------------------------------      114     58 ,      5      5     219:>KF314532,A/India/D0920482/2009,2009/07/06,India,H3N2      
 220 >KF314468,A/India/D0942707/2009,2009/05/04,India,H3N2      .......CC.C.........G...............................................A.........................T............................A.........................................................T......------------------------------------       82     44 ,     13      8     220:>KF314468,A/India/D0942707/2009,2009/05/04,India,H3N2      
 221 >KF314484,A/India/D0942727/2009,2009/07/29,India,H3N2      .......CC.C.........G...C.....................G...............................G...............T.................................................................----------------------------------------------------------------      136     72 ,      9      8     221:>KF314484,A/India/D0942727/2009,2009/07/29,India,H3N2      
 222 >KF314592,A/India/N0956480/2009,2009/08/07,India,H3N2      -----------------------------------------------...............................G...............T...................................C.....................................................G...------------------------------------      173     87 ,      5      4     222:>KF314592,A/India/N0956480/2009,2009/08/07,India,H3N2      
 223 >KF314498,A/India/D0942748/2009,2009/08/17,India,H3N2      -......CC.C.........G.........................................................G...............T...................................C................................................---------------------------------------------      104     53 ,      7      7     223:>KF314498,A/India/D0942748/2009,2009/08/17,India,H3N2      
 224 >KF314465,A/India/D0914877/2009,2009/06/20,India,H3N2      -......CC.C.........G.........................................................G...............T...................................C................................................---------------------------------------------      104     53 ,      7      7     224:>KF314465,A/India/D0914877/2009,2009/06/20,India,H3N2      
 225 >KF314574,A/India/K0915170/2009,2009/06/23,India,H3N2      .......CC.C.........G.........................................................G...............T...................G...............C..................................................-------------------------------------------       99     51 ,      9      8     225:>KF314574,A/India/K0915170/2009,2009/06/23,India,H3N2      
 226 >KF314561,A/India/K0914850/2009,2009/06/02,India,H3N2      .......CC.C.........G.........................................................G.......T.......T...................................C.........................................................------------------------------------       79     44 ,      8      8     226:>KF314561,A/India/K0914850/2009,2009/06/02,India,H3N2      
 227 >KF314570,A/India/K0914862/2009,2009/06/10,India,H3N2      ----------------------------------------------------------....................G.......T.......T...................................C...................................................------------------------------------------      222    104 ,      4      4     227:>KF314570,A/India/K0914862/2009,2009/06/10,India,H3N2      
 228 >KF314486,A/India/D0942728/2009,2009/07/31,India,H3N2      -......CC.C.........G......T..................................................G..........A....T...................................C.........................................................------------------------------------       83     46 ,      9      9     228:>KF314486,A/India/D0942728/2009,2009/07/31,India,H3N2      
 229 >KF314496,A/India/D0942744/2009,2009/08/11,India,H3N2      .......CC.C.........G.........................................................G..........A....T..................................................................................A..........------------------------------------       80     44 ,      9      8     229:>KF314496,A/India/D0942744/2009,2009/08/11,India,H3N2      
 230 >KF314476,A/India/D0942717/2009,2009/07/20,India,H3N2      .......CC.C.........G.........................................................G..........A....T....................................................................................---------------------------------------------       99     52 ,      7      7     230:>KF314476,A/India/D0942717/2009,2009/07/20,India,H3N2      
 231 >KF314626,A/India/P0912776/2009,2009/07/13,India,H3N2      -......CC.C.........G..............................................T..........G..........A....T....................................................................................---------------------------------------------      105     54 ,      8      8     231:>KF314626,A/India/P0912776/2009,2009/07/13,India,H3N2      
 232 >KF314627,A/India/P0916133/2009,2009/08/10,India,H3N2      -......CC.C.........G..............................................T..........................T....................................................................................---------------------------------------------      103     52 ,      6      6     232:>KF314627,A/India/P0916133/2009,2009/08/10,India,H3N2      
 233 >KF314629,A/India/P0913593/2009,2009/07/21,India,H3N2      -......CC.C.........G................................A.............T.......A..................T........................................G...........................................---------------------------------------------      107     55 ,     10      9     233:>KF314629,A/India/P0913593/2009,2009/07/21,India,H3N2      
 234 >KF314499,A/India/D0942753/2009,2009/08/20,India,H3N2      .......CC.C.........G.........................................................................T......................A.................G..............................................A.....------------------------------------       78     44 ,      9      8     234:>KF314499,A/India/D0942753/2009,2009/08/20,India,H3N2      
 235 >KF314643,A/India/P0956290/2009,2009/08/08,India,H3N2      --------------------------------------........................................................T........................................G..............................................A.....------------------------------------      155     77 ,      3      3     235:>KF314643,A/India/P0956290/2009,2009/08/08,India,H3N2      
 236 >KF314638,A/India/P0955904/2009,2009/08/06,India,H3N2      -------------------------------------.........................................................T........................................G.........................................-----------------------------------------------      179     86 ,      3      2     236:>KF314638,A/India/P0955904/2009,2009/08/06,India,H3N2      
 237 >KF314565,A/India/K0914857/2009,2009/06/05,India,H3N2      .......CCCC....G....G.................................................G............T..........T........................................G.............................................T....--------------------------------------       97     49 ,     15     11     237:>KF314565,A/India/K0914857/2009,2009/06/05,India,H3N2      
 238 >KF314641,A/India/P0956090/2009,2009/08/07,India,H3N2      -------------------------------------.........................................................T........................................G...............................................A....------------------------------------      154     76 ,      3      3     238:>KF314641,A/India/P0956090/2009,2009/08/07,India,H3N2      
 239 >KF314566,A/India/K0914858/2009,2009/06/08,India,H3N2      .......CC.C.........G.................................................G.......................T........................................G..............................................------------------------------------------       95     49 ,      7      7     239:>KF314566,A/India/K0914858/2009,2009/06/08,India,H3N2      
 240 >KF314471,A/India/D0942712/2009,2009/07/16,India,H3N2      -......CC.C.........G.................................................G.................C.....T........................................G....................................................------------------------------------       83     45 ,      9      8     240:>KF314471,A/India/D0942712/2009,2009/07/16,India,H3N2      
 241 >KF314477,A/India/D0942719/2009,2009/07/20,India,H3N2      .......CC.C.........G.................................................G.................CA....T........................................G....................................T................-----------------------------------       75     45 ,     10     10     241:>KF314477,A/India/D0942719/2009,2009/07/20,India,H3N2      
 242 >KF314478,A/India/D0942720/2009,2009/07/20,India,H3N2      .......CC.C.........G.........................................................................T........................................G.....................................................-----------------------------------       74     41 ,      9      6     242:>KF314478,A/India/D0942720/2009,2009/07/20,India,H3N2      
 243 >KF314567,A/India/K0914859/2009,2009/06/09,India,H3N2      --------------------------------------------------------------------..........................T........................................G..............................................------------------------------------------      242    112 ,      2      2     243:>KF314567,A/India/K0914859/2009,2009/06/09,India,H3N2      
 244 >KF314681,A/India/V1039877/2009,2009/09/11,India,H3N2      .......CC.C.........G........................G..A.............................................T........................................G..............T.....................................------------------------------------       81     45 ,     11      9     244:>KF314681,A/India/V1039877/2009,2009/09/11,India,H3N2      
 245 >KF314591,A/India/N0955898/2009,2009/08/05,India,H3N2      ---------------------------------------------------...........................................T........................................G....................................................------------------------------------      185     89 ,      3      2     245:>KF314591,A/India/N0955898/2009,2009/08/05,India,H3N2      
 246 >KF314680,A/India/V1039875/2009,2009/09/02,India,H3N2      .......CC.C.........G.....................G...................................................T........................................G..................................------------------------------------------------------      122     61 ,      7      7     246:>KF314680,A/India/V1039875/2009,2009/09/02,India,H3N2      
 247 >KF314630,A/India/P0916977/2009,2009/08/12,India,H3N2      -......CC.C.........G.....................G...................................................T........................................G..............T.....................................------------------------------------       82     45 ,      8      8     247:>KF314630,A/India/P0916977/2009,2009/08/12,India,H3N2      
 248 >KF314679,A/India/V1039876/2009,2009/09/02,India,H3N2      -......CC.C.........G.....................G...................................................T........................................G..............T.....................................------------------------------------       82     45 ,      8      8     248:>KF314679,A/India/V1039876/2009,2009/09/02,India,H3N2      
 249 >KF314479,A/India/D0942718/2009,2009/07/20,India,H3N2      .......CC.C.........G.................................................................T.......T........................................G..............T............-------------------------------------------------------------      131     69 ,      8      8     249:>KF314479,A/India/D0942718/2009,2009/07/20,India,H3N2      
 250 >KF314494,A/India/D0942742/2009,2009/08/07,India,H3N2      -......CC.C.........G.........................................................................T........................................G................................................G...------------------------------------       82     44 ,      8      7     250:>KF314494,A/India/D0942742/2009,2009/08/07,India,H3N2      
 251 >KF314402,A/India/C087865/2008,2008/02/05,India,H3N2       -......CC.C.........G.........................................................................T.........................................................................................G...------------------------------------       80     43 ,      6      6     251:>KF314402,A/India/C087865/2008,2008/02/05,India,H3N2       
 252 >KC428628,A/Kannur/MPLSF-148/2009,2009/08/19,India,H3N2    A......CC.C.........G.......................................C..................T..............T.........................................................................................G.......A.....................G.......--       14     13 ,     11     11     252:>KC428628,A/Kannur/MPLSF-148/2009,2009/08/19,India,H3N2    
 253 >KF314537,A/India/DIB105756/2009,2009/08/10,India,H3N2     -......CC.C.........G.........A.............................C.................................T.........................................................................................G...------------------------------------       83     45 ,      9      8     253:>KF314537,A/India/DIB105756/2009,2009/08/10,India,H3N2     
 254 >KF314640,A/India/P0956087/2009,2009/08/07,India,H3N2      -------------------------------------.......................C.................................T.........................................................................................G...------------------------------------      154     76 ,      3      3     254:>KF314640,A/India/P0956087/2009,2009/08/07,India,H3N2      
 255 >KF314645,A/India/P0956286/2009,2009/08/08,India,H3N2      -------------------------...................................C.................................T.........................................................................................G...------------------------------------      128     64 ,      4      3     255:>KF314645,A/India/P0956286/2009,2009/08/08,India,H3N2      
 256 >KF314590,A/India/M0956224/2009,2009/08/07,India,H3N2      -------------------------...................................C.................................T.............................................................................----------------------------------------------------      165     79 ,      2      2     256:>KF314590,A/India/M0956224/2009,2009/08/07,India,H3N2      
 257 >KF314589,A/India/M0956208/2009,2009/08/07,India,H3N2      ------------------------------------........................C.................................T........................................................................................A....------------------------------------      147     75 ,      3      3     257:>KF314589,A/India/M0956208/2009,2009/08/07,India,H3N2      
 258 >HM371173,A/KOL/2043/2008,2008//,India,H3N2                -----..CC.C.........G.........................................................................T............CC.......C..C..C............................................................A........A.....................G.....----       37     22 ,     14     13     258:>HM371173,A/KOL/2043/2008,2008//,India,H3N2                
 259 >HM371177,A/KOL/2452/2009,2009//,India,H3N2                -------------.......G.........................................................................T............CC.......C..C..C..............................................................G......A.....................G.....----       54     27 ,     10     10     259:>HM371177,A/KOL/2452/2009,2009//,India,H3N2                
 260 >Index/2009/Egypt/Iowa                                     .......CC.C.........G.........................................................................T.................................................................................................A.....................G.........        7      7 ,      7      7     260:>Index/2009/Egypt/Iowa                                     
 261 >KF314531,A/India/D0920481/2009,2009/07/06,India,H3N2      .......CC.C.........G.........................................................................T.............................................................................................------------------------------------       74     41 ,      5      5     261:>KF314531,A/India/D0920481/2009,2009/07/06,India,H3N2      
 262 >KF314490,A/India/D0942733/2009,2009/08/03,India,H3N2      .......CC.C.........G.........................................................................T.............................................................................................------------------------------------       74     41 ,      6      5     262:>KF314490,A/India/D0942733/2009,2009/08/03,India,H3N2      
 263 >KF314491,A/India/D0942734/2009,2009/08/04,India,H3N2      -......CC.C.........G.........................................................................T...............................C.............................................................------------------------------------       82     43 ,      8      6     263:>KF314491,A/India/D0942734/2009,2009/08/04,India,H3N2      
 264 >KF314481,A/India/D0942723/2009,2009/07/23,India,H3N2      -......CC.C.........G....................................................................A....T...............................C....................................................A........------------------------------------       82     45 ,      8      8     264:>KF314481,A/India/D0942723/2009,2009/07/23,India,H3N2      
 265 >KF314459,A/India/D0914870/2009,2009/04/30,India,H3N2      -......CC.C.........G....................................................................A....T..................................................................................-----------------------------------------------      105     54 ,      6      6     265:>KF314459,A/India/D0914870/2009,2009/04/30,India,H3N2      
 266 >KF314482,A/India/D0942725/2009,2009/07/27,India,H3N2      -......CC.C.........G....................................................................A....T.............................................................................................------------------------------------       80     43 ,      6      6     266:>KF314482,A/India/D0942725/2009,2009/07/27,India,H3N2      
 267 >KF314500,A/India/D0942756/2009,2009/08/20,India,H3N2      .......CC.C.........G................................................T...................A....T.............................................................................................------------------------------------       79     43 ,     10      7     267:>KF314500,A/India/D0942756/2009,2009/08/20,India,H3N2      
 268 >KF314406,A/India/C087869/2008,2008/03/04,India,H3N2       ----------------------------------------------------------------------...................A....T....................................................................................---------------------------------------------      254    117 ,      2      2     268:>KF314406,A/India/C087869/2008,2008/03/04,India,H3N2       
 269 >KF314463,A/India/D0914874/2009,2009/05/21,India,H3N2      .......CC.C.........G................................AC..C.GA............................A....T................................................................-----------------------------------------------------------------      147     76 ,     16     11     269:>KF314463,A/India/D0914874/2009,2009/05/21,India,H3N2      
 270 >KF314464,A/India/D0914876/2009,2009/05/29,India,H3N2      --------------------------------------------------------------------..........................T........................................................................................A----------------------------------------      238    110 ,      2      2     270:>KF314464,A/India/D0914876/2009,2009/05/29,India,H3N2      
 271 >KF314588,A/India/M0956227/2009,2009/08/07,India,H3N2      --------------------------------------............................A...........................T..................................................................................-----------------------------------------------      180     87 ,      2      2     271:>KF314588,A/India/M0956227/2009,2009/08/07,India,H3N2      
 272 >HM371174,A/KOL/2136/2009,2009//,India,H3N2                -......CC.C.........G.............................................A...........G...............T.........................................................................................G.......A...................------------       39     22 ,      9      9     272:>HM371174,A/KOL/2136/2009,2009//,India,H3N2                
 273 >KF314480,A/India/D0942722/2009,2009/07/23,India,H3N2      .......CC.C.........G.........................................................G...........G...T...............A.........................................................................G...------------------------------------       79     45 ,     10      9     273:>KF314480,A/India/D0942722/2009,2009/07/23,India,H3N2      
 274 >KF314676,A/India/V1039872/2009,2009/08/28,India,H3N2      .......CC.C.........G..........................A..............................G...............T.............................................................................................------------------------------------       78     43 ,      7      7     274:>KF314676,A/India/V1039872/2009,2009/08/28,India,H3N2      
 275 >KF314502,A/India/D0942755/2009,2009/08/20,India,H3N2      .......CC.C.........G.........................................................G...............T.............................................................................................------------------------------------       75     42 ,      6      6     275:>KF314502,A/India/D0942755/2009,2009/08/20,India,H3N2      
 276 >HM371175,A/KOL/2257/2009,2009//,India,H3N2                -----..CC.C.........G.........................................................G...............T........................................................................................A........A....................AG.....----       39     19 ,     15     10     276:>HM371175,A/KOL/2257/2009,2009//,India,H3N2                
 277 >KF314488,A/India/D0942731/2009,2009/08/03,India,H3N2      -------------------------------------.........................................G...............T..............................................................A........................------------------------------------------      168     82 ,      3      3     277:>KF314488,A/India/D0942731/2009,2009/08/03,India,H3N2      
 278 >KF314563,A/India/K0914852/2009,2009/06/02,India,H3N2      -----------....GG...G.........................................................G...............T.......................................................................----------------------------------------------------------      154     74 ,      7      5     278:>KF314563,A/India/K0914852/2009,2009/06/02,India,H3N2      
 279 >KF314580,A/India/K0915167/2009,2009/06/17,India,H3N2      ----------------------------------------------------------....................G...............T......................................................................................-------------------------------------------      221    103 ,      2      2     279:>KF314580,A/India/K0915167/2009,2009/06/17,India,H3N2      
 280 >KF314677,A/India/V1039874/2009,2009/08/29,India,H3N2      .......CC.C.........G................................AC.......................G...............T..............................................................................................-----------------------------------       77     43 ,     10      8     280:>KF314677,A/India/V1039874/2009,2009/08/29,India,H3N2      
 281 >KF314579,A/India/K0914856/2009,2009/06/04,India,H3N2      ----------------------------------------------------------....................G.......T.......T................................................................................-------------------------------------------------      231    110 ,      3      3     281:>KF314579,A/India/K0914856/2009,2009/06/04,India,H3N2      
 282 >KF314569,A/India/K0914861/2009,2009/06/09,India,H3N2      .......CC.C.........G..........................A...AT.........................G...............T...................G..............................................................-----------------------------------------------      109     57 ,     13     10     282:>KF314569,A/India/K0914861/2009,2009/06/09,India,H3N2      
 283 >KF314571,A/India/K0915166/2009,2009/06/11,India,H3N2      ----------------------------------------------------------....................G...............T............C.........................................................................T.....-------------------------------------      209     99 ,      4      4     283:>KF314571,A/India/K0915166/2009,2009/06/11,India,H3N2      
 284 >KF314564,A/India/K0914853/2009,2009/06/03,India,H3N2      .......CC.C.....G.GAG......T..................................................G...............T.................................................................----------------------------------------------------------------      143     74 ,     14     10     284:>KF314564,A/India/K0914853/2009,2009/06/03,India,H3N2      
 285 >KF314581,A/India/K098986/2009,2009/03/24,India,H3N2       ----------------------------------------------------------....................G...............T......................................................................................-------------------------------------------      221    103 ,      2      2     285:>KF314581,A/India/K098986/2009,2009/03/24,India,H3N2       
 286 >KF314568,A/India/K0914860/2009,2009/06/09,India,H3N2      ------------------..G................AGG.....GG.CT...A........................G...............T................................................................-----------------------------------------------------------------      194     94 ,     21     11     286:>KF314568,A/India/K0914860/2009,2009/06/09,India,H3N2      
 287 >KF314562,A/India/K0914851/2009,2009/06/02,India,H3N2      ------------------------------------------------------------------............G...............T.......................................................................................------------------------------------------      238    110 ,      2      2     287:>KF314562,A/India/K0914851/2009,2009/06/02,India,H3N2      
 288 >HM371176,A/KOL/2374/2009,2009//,India,H3N2                .....C.CC.C.........G............................................G............G...............T..........................................................................................G......A.....................G.......--       18     13 ,     14     11     288:>HM371176,A/KOL/2374/2009,2009//,India,H3N2                
 289 >KF314413,A/India/C087878/2008,2008/03/28,India,H3N2       ----------------------------------------------------------------------........G.........................................A..........................................................---------------------------------------------      254    117 ,      2      2     289:>KF314413,A/India/C087878/2008,2008/03/28,India,H3N2       
 290 >KF314449,A/India/C1063816/2010,2010/08/20,India,H3N2      -...........................................................C......A...........................................T........A..............................................C.............-------------------------------------------       96     49 ,      5      5     290:>KF314449,A/India/C1063816/2010,2010/08/20,India,H3N2      
 291 >KF314450,A/India/C1063818/2010,2010/08/27,India,H3N2      -...........................................................C......A...........................................T........A..............................................C.............-------------------------------------------       96     49 ,      5      5     291:>KF314450,A/India/C1063818/2010,2010/08/27,India,H3N2      
 292 >KF314431,A/India/C117496/2010,2010/09/29,India,H3N2       ............................................................C..............C............................................A..............................................C....................------------------------------------       73     40 ,      4      4     292:>KF314431,A/India/C117496/2010,2010/09/29,India,H3N2       
 293 >GU323770,A/Kolkata/1537/2008,2008/05/,India,H3N2          -------------...............................................C..............C............................................A..............................................C.....................................................---       40     20 ,      4      4     293:>GU323770,A/Kolkata/1537/2008,2008/05/,India,H3N2          
 294 >KF314552,A/India/K089059/2008,2008/06/30,India,H3N2       ................................................T.....T.....C..............C...................T.......T................A............................................-----------------------------------------------------------      130     66 ,      8      7     294:>KF314552,A/India/K089059/2008,2008/06/30,India,H3N2       
 295 >KF314556,A/India/K0810436/2008,2008/07/02,India,H3N2      ............................................................C..............C..............G............T................A...............................C.......----------------------------------------------------------------      135     70 ,      6      6     295:>KF314556,A/India/K0810436/2008,2008/07/02,India,H3N2      
 296 >KF314519,A/India/D0811477/2008,2008/07/15,India,H3N2      ............................................................C..............C..........T................T................A...............................C..............C...-----------------------------------------------------      122     60 ,     11      7     296:>KF314519,A/India/D0811477/2008,2008/07/15,India,H3N2      
 297 >KF314460,A/India/D0914871/2009,2009/05/04,India,H3N2      -......................................ATA..................C..............C..........T........T.......T................A...............................C..............C....................------------------------------------       85     48 ,     11     11     297:>KF314460,A/India/D0914871/2009,2009/05/04,India,H3N2      
 298 >KF314575,A/India/K0954411/2009,2009/08/12,India,H3N2      ....................................G.GATA..................C..............C.......T..T........T.......T................A...............................C..............C.....................-----------------------------------       82     49 ,     15     14     298:>KF314575,A/India/K0954411/2009,2009/08/12,India,H3N2      
 299 >KF314572,A/India/K0954408/2009,2009/06/22,India,H3N2      ....................................G.GATA..................C..............C..........T........T.......T................A...............................C........---------------------------------------------------------------      141     75 ,     13     12     299:>KF314572,A/India/K0954408/2009,2009/06/22,India,H3N2      
 300 >KF314576,A/India/K0954413/2009,2009/08/12,India,H3N2      ....................................G.G.TA..................C..............C..........T........T.......T................A...............................C..............C.....................-----------------------------------       79     47 ,     12     12     300:>KF314576,A/India/K0954413/2009,2009/08/12,India,H3N2      
 301 >KF314573,A/India/K0954407/2009,2009/06/22,India,H3N2      ....................G...............G.G.TA..................C..............C...................T.......T................A...............................C..............C.-------------------------------------------------------      129     67 ,     12     12     301:>KF314573,A/India/K0954407/2009,2009/06/22,India,H3N2      
 302 >KF314425,A/India/C091337/2008,2008/12/23,India,H3N2       --------------------------------------------................C..............C............................................A.................C...T................-----------------------------------------------------------------      225    114 ,      6      5     302:>KF314425,A/India/C091337/2008,2008/12/23,India,H3N2       
 303 >KF314671,A/India/V094402/2008,2008/10/06,India,H3N2       -...........................................................C..............C............................................A.....C...........C...T..................................-----------------------------------------------      105     54 ,      6      6     303:>KF314671,A/India/V094402/2008,2008/10/06,India,H3N2       
 304 >KF314551,A/India/K089049/2008,2008/06/04,India,H3N2       -...........................................................C..............C............................................A.....C..................................................-----------------------------------------------      103     52 ,      4      4     304:>KF314551,A/India/K089049/2008,2008/06/04,India,H3N2       
 305 >KF314448,A/India/C087879/2008,2008/03/31,India,H3N2       --------------------------------------------------..........C..............C............................................A.....C..................................................-----------------------------------------------      207    101 ,      4      4     305:>KF314448,A/India/C087879/2008,2008/03/31,India,H3N2       
 306 >KF314582,A/India/K089056/2008,2008/06/19,India,H3N2       ----------..................................................C..............C............................................A.....C................................................-------------------------------------------------      124     63 ,      4      4     306:>KF314582,A/India/K089056/2008,2008/06/19,India,H3N2       
 307 >KF314446,A/India/C087872/2008,2008/10/03,India,H3N2       --------------------------------------------------..........C...........................................................A.....C..................................................-----------------------------------------------      206    100 ,      3      3     307:>KF314446,A/India/C087872/2008,2008/10/03,India,H3N2       
 308 >KF314583,A/India/K089061/2008,2008/06/30,India,H3N2       ----------..................................................C..............C............................................A.....C................................................-------------------------------------------------      124     63 ,      4      4     308:>KF314583,A/India/K089061/2008,2008/06/30,India,H3N2       
 309 >KF314447,A/India/C087874/2008,2008/03/19,India,H3N2       --------------------------------------------------..........C..............C............................................A.....C..................................................-----------------------------------------------      207    101 ,      4      4     309:>KF314447,A/India/C087874/2008,2008/03/19,India,H3N2       
 310 >KF314401,A/India/C087864/2008,2008/02/05,India,H3N2       ..................................A.........................C..............C............................................A.....C.......................................................------------------------------------------       94     47 ,      6      5     310:>KF314401,A/India/C087864/2008,2008/02/05,India,H3N2       
 311 >KF314439,A/India/C091335/2008,2008/12/15,India,H3N2       --------------------------------------------...........A....C..............C............................................A.....C..............................-------------------------------------------------------------------      230    116 ,      5      5     311:>KF314439,A/India/C091335/2008,2008/12/15,India,H3N2       
 312 >KF314421,A/India/C0817292/2008,2008/11/06,India,H3N2      ------------------------------------...................A....C..............C.............................T..............A.....C..............................-------------------------------------------------------------------      213    109 ,      6      6     312:>KF314421,A/India/C0817292/2008,2008/11/06,India,H3N2      
 313 >KF314436,A/India/C085268/2007,2007/11/20,India,H3N2       ------------------------------------...................A....C..............C.............................T..............A.....C.............................................----------------------------------------------------      189     94 ,      6      6     313:>KF314436,A/India/C085268/2007,2007/11/20,India,H3N2       
 314 >KF314424,A/India/C0817302/2008,2008/11/18,India,H3N2      ...............G.......................................A....C..............C.............................T..............A.............................................................------------------------------------------       94     48 ,      6      6     314:>KF314424,A/India/C0817302/2008,2008/11/18,India,H3N2      
 315 >KF314423,A/India/C0817297/2008,2008/11/14,India,H3N2      ------------------------------------...................A....C..............C.............................T..............A....................................-------------------------------------------------------------------      212    108 ,      5      5     315:>KF314423,A/India/C0817297/2008,2008/11/14,India,H3N2      
 316 >KF314445,A/India/C0817299/2008,2008/11/18,India,H3N2      --------------------------------------------------------....C..............C.............................T..............A....................................-------------------------------------------------------------------      265    127 ,      4      4     316:>KF314445,A/India/C0817299/2008,2008/11/18,India,H3N2      
 317 >KF314420,A/India/C0817284/2008,2008/11/03,India,H3N2      ...............G.......................................A....C..............C.............................T..............A.............................................................------------------------------------------       94     48 ,      6      6     317:>KF314420,A/India/C0817284/2008,2008/11/03,India,H3N2      
 318 >KF314442,A/India/C0817277/2008,2008/10/17,India,H3N2      --------------------------------------------------------....C..............C.............................T..............A....................................-------------------------------------------------------------------      265    127 ,      4      4     318:>KF314442,A/India/C0817277/2008,2008/10/17,India,H3N2      
 319 >KF314437,A/India/C0817268/2008,2008/10/06,India,H3N2      ------------------------------------...................A....C..............C.............................T..............A....................................-------------------------------------------------------------------      212    108 ,      5      5     319:>KF314437,A/India/C0817268/2008,2008/10/06,India,H3N2      
 320 >KF314444,A/India/C0817291/2008,2008/06/11,India,H3N2      --------------------------------------------------.....A....C..............C.............................T..............A.................................----------------------------------------------------------------------      253    125 ,      5      5     320:>KF314444,A/India/C0817291/2008,2008/06/11,India,H3N2      
 321 >KF314419,A/India/C0817271/2008,2008/10/13,India,H3N2      ------------------------------------...................A....C..............C.............................T..............A....................................-------------------------------------------------------------------      212    108 ,      5      5     321:>KF314419,A/India/C0817271/2008,2008/10/13,India,H3N2      
 322 >KF314443,A/India/C0817285/2008,2008/11/03,India,H3N2      --------------------------------------------------------....C..............C.............................T..............A....................................-------------------------------------------------------------------      265    127 ,      4      4     322:>KF314443,A/India/C0817285/2008,2008/11/03,India,H3N2      
 323 >KF314407,A/India/C087870/2008,2008/03/08,India,H3N2       -.................................A.........................C..............C............................................A......................................G....................--------------------------------------------       99     50 ,      5      5     323:>KF314407,A/India/C087870/2008,2008/03/08,India,H3N2       
 324 >KF314412,A/India/C087877/2008,2008/03/28,India,H3N2       ----------------------------------------------------------------------..................................................A......................................G......................------------------------------------------      248    114 ,      2      2     324:>KF314412,A/India/C087877/2008,2008/03/28,India,H3N2       
 325 >KF314510,A/India/D058688/2005,2005/03/08,India,H3N2       ...................................G................TC...TTG...T....................G..A...........A.........G..........A......................................A..T......C.....C.................T.CTC--------------------------       86     46 ,     34     20     325:>KF314510,A/India/D058688/2005,2005/03/08,India,H3N2       
 326 >KF314545,A/India/K0615330/2005,2005/10/06,India,H3N2      -----------------------------------------------------------------...................G..............A.........G..........A......................................A..T......C.....C......------------------------------------------      242    115 ,      9      8     326:>KF314545,A/India/K0615330/2005,2005/10/06,India,H3N2      
 327 >KF314661,A/India/P059124/2005,2005/10/03,India,H3N2       .........................T.......T........................A.........................G..A...........A.........G..........A......................................A..T......C.....C......------------------------------------------       98     54 ,     12     12     327:>KF314661,A/India/P059124/2005,2005/10/03,India,H3N2       
 328 >KF314666,A/India/P054072/2005,2005/06/30,India,H3N2       .........................T.......T........................A.........................G..A...........A.........G..........A......................................A..--------------------------------------------------------------      133     71 ,      9      9     328:>KF314666,A/India/P054072/2005,2005/06/30,India,H3N2       
 329 >A/Wisconsin/67/2005/08/                                   ..........................................................A.................G.......G..A...........A.........G..........A......................................A..T......C.....C.................T.CA..T......................T.       17     16 ,     17     16     329:>A/Wisconsin/67/2005/08/                                   
 330 >KF314611,A/India/P045007/2004,2004/08/09,India,H3N2       ....................................................................................G..A...........A.........G..........A..........................A..............T......C.....C.................T.CA..T............------------       42     25 ,     17     13     330:>KF314611,A/India/P045007/2004,2004/08/09,India,H3N2       
 331 >KF314609,A/India/P04600/2004,2004/02/24,India,H3N2        ....................................................................................G..A...........A.........G..........A..A......................................T......C.....C.................T.CA..T........................       13     13 ,     13     13     331:>KF314609,A/India/P04600/2004,2004/02/24,India,H3N2        
 332 >KF314451,A/India/C058668/2005,2005/04/11,India,H3N2       -...................................................................................G..A...........A.........G..........A..A..................................------------------------------------------------------------------      141     73 ,      6      6     332:>KF314451,A/India/C058668/2005,2005/04/11,India,H3N2       
 333 >KF314441,A/India/C0511132/2005,2005/10/03,India,H3N2      -...................................................................................G..A...........A.........G..........A..A......................................T......C.....C.................T.CA..T.......................-       19     15 ,     13     13     333:>KF314441,A/India/C0511132/2005,2005/10/03,India,H3N2      
 334 >KF314610,A/India/P042350/2004,2004/03/23,India,H3N2       .............................................................................G......G..A...........A.........G..........A..A......................................T......C.....C.................T.CA..T.-----------------------       57     37 ,     14     14     334:>KF314610,A/India/P042350/2004,2004/03/23,India,H3N2       
 335 >KF314606,A/India/P038072/2003,2003/08/22,India,H3N2       ....................................................................................G..A...........A.T.......G..........A..A......................................T......C.....C............------------------------------------       79     46 ,     10     10     335:>KF314606,A/India/P038072/2003,2003/08/22,India,H3N2       
 336 >KF314660,A/India/P045058/2004,2004/08/11,India,H3N2       ....................................................................................G..A...........A.........G..........A.........................................T......C.....C.....-------------------------------------------       97     51 ,     10      8     336:>KF314660,A/India/P045058/2004,2004/08/11,India,H3N2       
 337 >KF314612,A/India/PP05142/2005,2005/01/10,India,H3N2       ....................................................................................G..A...........A.........G.......A..A.........................................T......C.....C.................T..A..T........................       15     12 ,     15     12     337:>KF314612,A/India/PP05142/2005,2005/01/10,India,H3N2       
 338 >KF314615,A/India/P063078/2006,2006/03/06,India,H3N2       ........................C................................G..........................G..A...........A.........G.......T..A...CA....................................T......C.....CC..---------------------------------------------      108     59 ,     16     14     338:>KF314615,A/India/P063078/2006,2006/03/06,India,H3N2       
 339 >KF314614,A/India/P057475/2005,2005/08/29,India,H3N2       ....................................................................................G..A...........A.........G..........A.........................................T......C.....C...---------------------------------------------      101     53 ,      9      8     339:>KF314614,A/India/P057475/2005,2005/08/29,India,H3N2       
 340 >KF314613,A/India/P056135/2005,2005/08/08,India,H3N2       .......................G............................................................G..A...........A.........G..........A...................................T.....T......C.....C...---------------------------------------------      102     55 ,     10     10     340:>KF314613,A/India/P056135/2005,2005/08/08,India,H3N2       
 341 >KF314513,A/India/D058691/2005,2005/03/16,India,H3N2       ----...................G...............................A............................G..A.........C.A.........G..........A...................................T..-----------------------------------------------------------------      147     78 ,      9      9     341:>KF314513,A/India/D058691/2005,2005/03/16,India,H3N2       
 342 >KF314512,A/India/D059690/2005,2005/03/15,India,H3N2       ----------------.......G...............................A............................G..A.........C.A.........G..........A...................................T..-----------------------------------------------------------------      177     90 ,      9      9     342:>KF314512,A/India/D059690/2005,2005/03/15,India,H3N2       
 343 >GU323768,A/Kolkata/323/2006,2006/08/,India,H3N2           ------.....C...........G............................................................G..A.........C.A.........G..C.......A...................................T.....T....A.C.....C...................CA..T.................T..C.--       44     27 ,     25     19     343:>GU323768,A/Kolkata/323/2006,2006/08/,India,H3N2           
 344 >GU323767,A/Kolkata/220/2006,2006/06/,India,H3N2           ------.................G............................................................G..A.........C.A.........G..C.......AG......................A...........T.....T....A.C.....C...................CA..T.................T..----       51     29 ,     23     19     344:>GU323767,A/Kolkata/220/2006,2006/06/,India,H3N2           
 345 >KF314542,A/India/Dib0622567/2006,2006/06/27,India,H3N2    --------------.........G................................A...........................G..A.........C.AC........G..........A....................A..............T..-----------------------------------------------------------------      174     90 ,     11     11     345:>KF314542,A/India/Dib0622567/2006,2006/06/27,India,H3N2    
 346 >KF314543,A/India/Dib0622568/2006,2006/06/27,India,H3N2    -------------------------------------...................A...........................G..A.........C.AC........G..........A....................A..............T..-----------------------------------------------------------------      217    112 ,     10     10     346:>KF314543,A/India/Dib0622568/2006,2006/06/27,India,H3N2    
 347 >KF314518,A/India/D0612425/2006,2006/01/30,India,H3N2      ----G...GC...T.........G....G.......................................................G..A.........C.A.........G..........A....................A..............T..-----------------------------------------------------------------      155     83 ,     16     14     347:>KF314518,A/India/D0612425/2006,2006/01/30,India,H3N2      
 348 >KF314541,A/India/Dib0622566/2006,2006/06/06,India,H3N2    -------------------------...........................................................G..A.........C.AC........G..........A....................A..............T..-----------------------------------------------------------------      194     99 ,     10      9     348:>KF314541,A/India/Dib0622566/2006,2006/06/06,India,H3N2    
 349 >KF314517,A/India/D0612424/2006,2006/01/30,India,H3N2      -.T.G..................G............................................................G..A.........C.A.........G..........A......................................T----------------------------------------------------------------      141     75 ,     10     10     349:>KF314517,A/India/D0612424/2006,2006/01/30,India,H3N2      
 350 >KF314511,A/India/D058689/2005,2005/03/10,India,H3N2       ------------------------------------------------------------........................G..A...........A.........G..........A......................................-----------------------------------------------------------------      269    130 ,      5      5     350:>KF314511,A/India/D058689/2005,2005/03/10,India,H3N2       
 351 >KF314547,A/India/K0713780/2007,2007/07/24,India,H3N2      ............GT.........G......A.............T.......................................G..A.........C.A.........G..C.......A..............T........................----------------------------------------------------------------      143     77 ,     14     13     351:>KF314547,A/India/K0713780/2007,2007/07/24,India,H3N2      
 352 >GU323765,A/Kolkata/77/2005,2005/11/,India,H3N2            -----------............G....................T.......................................G..A.........C.A.........G..C.......A...T......G.............T..........T.....T....G.C.....C...................CA..T.......G.........T..C---       69     37 ,     35     23     352:>GU323765,A/Kolkata/77/2005,2005/11/,India,H3N2            
                                                                                                                                                                                                                                                                                                 
---Index--------------------------------------------------------GTCTATCTTGTGAATACAATATTATCCCACGGACCAAGATATCGCAAGGATGAGGGGAGATATGATCGGGACGATTAAACCTGAAACGTGAATGCCGTATTCGGACTTAAGGTAATTGGGGTAGACGGACTATGTAAATCGGCGTCTGCGCCTTCACCACCACTTTATGTACCACTTGGTAGGCATATCGGAGCCTGTCGGAGCACGATTCGAGAGCCTCTGCA 
-codon-position-------------------------------------------------1112221 122122 12 12 2  2212 12122 11212 121122212 212 1112 1111211221112 1111121 1122  12  111212111211 121 212122121 22 1211 11112 1112 1211121 211111111111211221 1212111 211212112 2 11111  1 1 1111112111 2111 1112 1 11212 
                                                                00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000111111111111111111111111111111111111111111111111111 
                                                                00000000000000011111111111111111111111122222222222222222222222333333333333344444444444444444444444445555555555555556666666666666666777777777777777888888888888899999999999999000000000000000001111111111111111222222222233333333 
                                                                24455677788889900111222233334445566689900000111222444456777788012222447788900111223344455556667788990001124478899991123344566677899113344556778899022234557789901223344455679001111233344446790001112456788899000344889900113599 
                                                                83939808906892907489056914671291245611601235158134357858148939160589790301736289790603401235692378092681662731605690480848224723517373656344587805306981391732979097904605196462356104801253861780460162167928057438251529189201

gsgs · Feb 8, 2014

Re: India as the possible source of worlwide seasonal waves

Re: India as the possible source of worlwide seasonal waves

sorry for the temporary copy and the bumping
I had to reorganize this thread

subtract one from the NA-locations above

indi34.l2
1-14,2005-6,Wisconsin,467A,930T,(197G,447T,954T)
15-32,2006-8,US07,60T,(117G,549C,969G)
33-92,2008-13,CZ;2011;E/I;Perth,60T,567C,565C,729T
93-124,2008,-,60T,549C,969G
125-152,2005-8,-,
153-175,2005-7,197G,447T,467A,(930T,472G)
176-243,2002-6,Fujian,197G,447T,467A,625A,626G,630A,714G,721G,811C,954T

indi36.l1
1-28,2003-2005,pre-Fujian,53G,68C,70T
29-34,2003,Fujian,86C,278A,320C,etc.
35-91,2005-9,US07,644A
(90-91 recombination)
90-102,2008-9,2011;2012;E/I+NA,838T,1282T,1391C
103-169,2009-13,CZ;2011,268A,667T,733A,838T
170-190 and 198-288,2008-9,E/I,78C,79C,86C,120G,472T
191-197,2009,Perth(289G,430A,892A,1030G,1045G)
289-324,2007-10,283C,644A,(403C)
325-352,2003-7,Wisconsin,440G,450A,488C,499A,581G,644A,929T,946G,955G

-----------------------------------------------
possible split of Fujian mutations in HA:
(Italian recombination ?)
http://www.ncbi.nlm.nih.gov/nuccore/DQ179459
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC1317174/

----------------------------------------------------------------------------------------------
"Italian" pseudo-recombination in NA:
Assembly Method :: MEGA v. 5.2
Sequencing Technology :: Sanger dideoxy sequencing
National Institute of Virology,
20-A, Dr. Ambedkar Road, Post Box No. 11, Pune, Maharashtra 411001,
http://www.ncbi.nlm.nih.gov/nuccore/KF314455
f32,2008/07/04
http://www.ncbi.nlm.nih.gov/nuccore/KF314535
f20,2008/07/14
http://www.ncbi.nlm.nih.gov/nuccore/KF314509
f31,2008/07/15
http://www.ncbi.nlm.nih.gov/nuccore/KF314416
f19,2009/04/29
----------------------------------------------------------------------------------------------

the first published Fujian HA from India is from 2002/08/16 (fist worldwide HK,2002/06/01)
pre-Fujian HA existed in India until at least 2005/12/24
A/India/C3-45/2002,HA, has 3 of 6 Fujian mutations (6 at available positions, 5 at non-sequenced locations)
this could be another fake ("Italian") recombination [btw. how should we call that sort of error
which appears quite often and looks like recombination ? first confirmed by the Italian lab as reported
here earlier, also seen in NA of A/India/D0811474/2008, maybe better "WR"-pseudo recombination,
since it happened extensively in the Walter-Reed-army-hospital lab, but I think they used
2nd generation sequencing, not Sanger]

2002 "Fujian"-mutations in HA : T31C,C121A,G156T,T273G,C511A,A512C,G648A,G1011A,C1044T,T1149C,C1642T
-------------------------------------------------------------------------------------------

--------------------------------------------------
T518C(4),A/India/LKO3824/2013,2013/06/26,H3N2
---------------------------------------------

gsgs · May 6, 2014

Re: India as the possible source of worlwide seasonal waves

Re: India as the possible source of worlwide seasonal waves

31 India- old-H1N1 , HA1 from 2005-2007 today at genbank

>CY090332|A/India/D0512583/2005(H1N1)
>CY090345|A/India/D078743/2007(H1N1)
>CY090356|A/India/Dib0615325/2005(H1N1)
>CY090358|A/India/Dib0615328/2005(H1N1)
>CY090359|A/India/Dib0615329/2005(H1N1)
>CY090363|A/India/K0713758/2007(H1N1)
>CY090373|A/India/K0713775/2007(H1N1)
>CY090375|A/India/K0713779/2007(H1N1)
>CY090381|A/India/K072145/2006(H1N1)
>CY090382|A/India/K072146/2006(H1N1)
>CY090391|A/India/P053601/2005(H1N1)
>CY090392|A/India/P054093/2005(H1N1)
>CY090394|A/India/P054277/2005(H1N1)
>CY090403|A/India/P056134/2005(H1N1)
>CY090404|A/India/P0614627/2006(H1N1)
>CY090405|A/India/P0617488/2006(H1N1)
>CY090410|A/India/P075520/2007(H1N1)
>CY090411|A/India/P076063/2007(H1N1)
>CY090412|A/India/P076067/2007(H1N1)
>CY090414|A/India/P076095/2007(H1N1)
>CY090415|A/India/P076123/2007(H1N1)
>CY090416|A/India/P076124/2007(H1N1)
>CY090417|A/India/P076185/2007(H1N1)
>CY090418|A/India/P076266/2007(H1N1)
>CY090421|A/India/P076290/2007(H1N1)
>CY090422|A/India/P076523/2007(H1N1)
>CY090423|A/India/P076524/2007(H1N1)
>CY090425|A/India/P077142/2007(H1N1)
>CY090426|A/India/P077143/2007(H1N1)
>CY090427|A/India/P077592/2007(H1N1)
>CY090428|A/India/P077596/2007(H1N1)

---------------------------------------------------------

looking at old H1 ... I remember
Caledonia-->Solomon-->Brisbane vaccine strains,
then came the Tamiflu resistant variant in early 2008 to Europe

----------------------------------------
>DQ508857,A/New Caledonia/20/1999,1999//,New Caledonia,H1N1,0,1-1698,0

>EU100724,A/Solomon Islands/3/2006,2006/08/21,Solomon Islands,H1N1,38,1-1698,
38, (-T813C)
C8T,T30C,A147G,C172T,C181T,A269G,C296A,T331C,G433A,T434C,
A469G,G485A,T545C,G606T,A607G,C618T,G674A,A716G,G717A,G747A,
G750T,T756C,T802A,G804A,T813C,C848A,T885C,A939T,G1089T,T1149C,
C1167T,C1294A,C1434T,A1465G,G1485A,T1605A,T1619G,G1697A

>CY030232,A/Brisbane/59/2007,2007/07/01,Australia,H1N1,50,1-1698,
50,
C8T,T30C,C78T,A87G,G114A,A147G,G154A,C181T,A228G,A273G,
C296A,T331C,C339T,A390G,A444G,A469G,T545C,G558A,T597A,G606T,
A608T,G614A,G674A,G717A,C732T,G750T,T756C,T802A,G804A,T813C,
C848A,G868A,T885C,T930C,G1089T,T1149C,C1167T,A1269G,C1294A,T1321C,
A1404G,C1419T,C1434T,A1465G,G1485A,A1488G,T1605A,C1617T,G1677A,G1697A

=Solomon+C78T+A87G+G114A+G154A-C172T+A228G-A269G+A273G+C339T+A390G
-G433A-T434C+A444G-G485A+G558A+T597A-A607G+A608T+G614A-C618T-A716G
+C732T-G747A+G868A+T930C-A939T+A1269G+T1321C+A1404G+C1419T+A1488G
+C1617T-T1619G+G1677A
+23-11

>CCCCCCCC,A/Index/Europe/2008,2008/01/01,Europe,H1N1,51,1-1698,
51,
C8T,T30C,C78T,A87G,G114A,A147G,G154A,C181T,T213C,A228G,
A273G,C296A,T331C,C339T,A390G,A444G,A469G,T545C,G558A,T597A,
G606T,A607G,G614A,C645T,G674A,G717A,G750T,T756C,T802A,G804A,
T813C,C848A,G868A,T885C,T930C,G1089T,T1149C,C1167T,T1224A,A1269G,
C1294A,T1321C,A1404G,C1419T,C1434T,A1465G,G1485A,A1488G,T1605A,C1617T,
G1697A

=Brisbane+T213C,+A607G-A608T+C645T-C732T+T1224A-G1677A
------------------------
+A607G-A608T-C732T-G1677A as in Solomon
new are T213C,C645T,T1224A

---------------------------------------------------------

78,87 first seen in India/D0612413/2005/08/12

India/D0512583/2005/03/16 had several of the S

213,645 first seen in India/P076068/2007/06/11

of the 31 all have 607G,611A,25 have 732C, 6 have 645T, as in
the 2008 Europe strain, although none has 213C

more evidence for new successful strains originating in India ...

Vibrant62 · May 6, 2014

Re: India as the possible source of worldwide seasonal flu waves

It makes sense. India now has as dense a population as China (and will overtake it shortly) with a lot of both backyard and farmed poultry, and regions with large numbers of migratory birds.

It looks to me as much of a potential 'hotbed' for reassortment and viral evolution as China.

gsgs · May 6, 2014

Re: India as the possible source of worldwide seasonal flu waves

you may start to wonder how it was in ancient flu times ...

flu pandemics usually came from Africa, the Orient,
at least 2 entered Europe through Sicily and there are hardly
reports about flu before Vasco Da Gama,
first generally accepted flu-pandemic in 1510

India as the possible source of worldwide seasonal flu waves

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