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Identification of 2019-nCoV related coronaviruses in Malayan pangolins in southern China

Gert van der Hoek

In Memoriam - Editor, Senior Moderator
[h=2]Abstract[/h]
The ongoing outbreak of viral pneumonia in China and beyond is associated with a novel coronavirus, provisionally termed 2019-nCoV. This outbreak has been tentatively associated with a seafood market in Wuhan, China, where the sale of wild animals may be the source of zoonotic infection. Although bats are likely reservoir hosts for 2019-nCoV, the identity of any intermediate host facilitating transfer to humans is unknown.

Here, we report the identification of 2019-nCoV related coronaviruses in pangolins (Manis javanica) seized in anti-smuggling operations in southern China. Metagenomic sequencing identified pangolin associated CoVs that belong to two sub-lineages of 2019-nCoV related coronaviruses, including one very closely related to 2019-nCoV in the receptor-binding domain.

The discovery of multiple lineages of pangolin coronavirus and their similarity to 2019-nCoV suggests that pangolins should be considered as possible intermediate hosts for this novel human virus and should be removed from wet markets to prevent zoonotic transmission
.

February 18, 2020.
 
> 85.5% to 92.4% similarity t
> extremely closely related to 2019-nCoV

RaTG13 had >96%
that gives a TMRA >50 years away
test other animals !

> Data that support the findings of this study have been deposited in GenBank database with
> the xxxx-xxxx accession codes and SRA database with xxxx-xxxx accession codes.
 
test other animals !
That was my conclusion too. I could not zoom in far enough on the graphic showing the sequence homologies to get a clear read but their Pangolins were about as distant as the SL beta CoVs and could not account for them being the intermediate hosts.
 
Il y a bien des instances internationales, dont la comp?tence est encore ? d?montrer. Le bon exemple me semble les pestes porcines africaines. Aussi longtemps que cela a ?t? g?r? par ce type d'instances on a appris pas grand chose. Mais, depuis que cela est advenu en certains lieux, l? , on a commenc? ? vraiment avanc?...

Donc, les autorit?s v?t?rinaires de la zone Asie et pacifique ont publi? quoi ? ce stade ?
 
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