Homologous Recombination is Very Rare or Absent in Human Influenza A Virus

HenryN · Mar 28, 2008

Re: Homologous Recombination is Very Rare or Absent in Human Influenza A Virus

gsgs said:
> In six of the eight genes, the percentage of human polymorphisms
> are higher than the swine polymorphisms, PB2(51/40), PB1(55/40),
> PA(52/39), HA(53/49), MP(52/40), NS(55/41) while the
> swine polymorphisms are greater in the remaining two gene
> segments, NP(42/47) and NA(34/51).

can you explain, how you define "human polymorphism" and
"swine polymorphism" ? How I can verify the numbers ?

The swine polymorphisms were in the swine isolate, and the human were in WSN/33. All sequences are public.

HenryN · Mar 28, 2008

Re: Homologous Recombination is Very Rare or Absent in Human Influenza A Virus

gsgs said:
..and the headline summarizes the abstract.
Even if there were strong evidence for short recombinations (<100),
there should also be some more longer ones.
This is unusual, that I can't find them in human sequences.

You couldn't find the 1991 sequences in the 2002 Korean recombinants, which means your assay and database needs work. Those recombinants were well into the OBVIOUS category.

HenryN · Mar 28, 2008

Re: Homologous Recombination is Very Rare or Absent in Human Influenza A Virus

gsgs said:
..and the headline summarizes the abstract.
Even if there were strong evidence for short recombinations (<100),
there should also be some more longer ones.
This is unusual, that I can't find them in human sequences.

Below is a partial travel log for one of the polymorphisms. Notice its movement into swine in 1994, disappearnce from human between 1994 and emergence in 2002 in South Korea, and its recent appearance in humans in Iran (list isn't in chronological order - Los Alamos is closed)

gb|EU430047.1| Influenza A virus (A/Shiraz/02/2006(H3N2)) hem... 28.2 146
gb|EU430044.1| Influenza A virus (A/Shiraz/05/2006(H3N2)) hem... 28.2 146
gb|EU430043.1| Influenza A virus (A/Shiraz/29/2006(H3N2)) hem... 28.2 146
gb|EU430042.1| Influenza A virus (A/Shiraz/37/2006(H3N2)) non... 28.2 146
gb|EU430041.1| Influenza A virus (A/Shiraz/54/2006(H3N2)) hem... 28.2 146
gb|EU430040.1| Influenza A virus (A/Shiraz/13/2006(H3N2)) hem... 28.2 146
gb|EU311407.1| Influenza A virus (A/Tehran/27/2006(H3N2)) hem... 28.2 146
gb|EU311405.1| Influenza A virus (A/Tehran/16/2006(H3N2)) hem... 28.2 146
gb|EF456784.1| Influenza A virus (A/England/121/1995(H3N2)) s... 28.2 146
gb|EF456783.1| Influenza A virus (A/England/79/1994(H3N2)) se... 28.2 146
gb|EF118174.1| Influenza A virus (A/swine/Jena/3765/1989(H3N2... 28.2 146
gb|CY017307.1| Influenza A virus (A/New York/704/1994(H3N2)) ... 28.2 146
gb|CY013789.1| Influenza A virus (A/New York/803/1993(H3N2)) ... 28.2 146
gb|CY013773.1| Influenza A virus (A/New York/801/1993(H3N2)) ... 28.2 146
gb|CY013765.1| Influenza A virus (A/New York/799/1993(H3N2)) ... 28.2 146
gb|CY013757.1| Influenza A virus (A/New York/798/1993(H3N2)) ... 28.2 146
gb|CY013749.1| Influenza A virus (A/New York/797/1993(H3N2)) ... 28.2 146
gb|CY013741.1| Influenza A virus (A/New York/795/1993(H3N2)) ... 28.2 146
gb|CY013725.1| Influenza A virus (A/New York/792/1993(H3N2)) ... 28.2 146
gb|CY013709.1| Influenza A virus (A/New York/790/1993(H3N2)) ... 28.2 146
gb|CY013677.1| Influenza A virus (A/New York/784/1993(H3N2)) ... 28.2 146
gb|CY013653.1| Influenza A virus (A/New York/774/1993(H3N2)) ... 28.2 146
gb|CY013629.1| Influenza A virus (A/New York/769/1993(H3N2)) ... 28.2 146
gb|CY014151.1| Influenza A virus (A/New York/796/1993(H3N2)) ... 28.2 146
gb|CY014143.1| Influenza A virus (A/New York/793/1993(H3N2)) ... 28.2 146
gb|CY013887.1| Influenza A virus (A/New York/717/1994(H3N2)) ... 28.2 146
gb|CY013781.1| Influenza A virus (A/New York/802/1993(H3N2)) ... 28.2 146
gb|CY013733.1| Influenza A virus (A/New York/794/1993(H3N2)) ... 28.2 146
gb|CY013717.1| Influenza A virus (A/New York/791/1993(H3N2)) ... 28.2 146
gb|CY013701.1| Influenza A virus (A/New York/789/1993(H3N2)) ... 28.2 146
gb|CY013693.1| Influenza A virus (A/New York/788/1993(H3N2)) ... 28.2 146
gb|CY013685.1| Influenza A virus (A/New York/787/1993(H3N2)) ... 28.2 146
gb|CY013661.1| Influenza A virus (A/New York/776/1993(H3N2)) ... 28.2 146
gb|CY013645.1| Influenza A virus (A/New York/773/1993(H3N2)) ... 28.2 146
gb|CY013637.1| Influenza A virus (A/New York/772/1993(H3N2)) ... 28.2 146
gb|CY013621.1| Influenza A virus (A/New York/768/1993(H3N2)) ... 28.2 146
gb|CY013613.1| Influenza A virus (A/New York/766/1993(H3N2)) ... 28.2 146
gb|CY013605.1| Influenza A virus (A/New York/757/1993(H3N2)) ... 28.2 146
gb|CY013367.1| Influenza A virus (A/New York/745/1994(H3N2)) ... 28.2 146
gb|CY013359.1| Influenza A virus (A/New York/744/1994(H3N2)) ... 28.2 146
gb|CY013351.1| Influenza A virus (A/New York/743/1994(H3N2)) ... 28.2 146
gb|CY013343.1| Influenza A virus (A/New York/742/1994(H3N2)) ... 28.2 146
gb|CY013335.1| Influenza A virus (A/New York/731/1994(H3N2)) ... 28.2 146
gb|CY013208.1| Influenza A virus (A/New York/785/1993(H3N2)) ... 28.2 146
gb|CY013200.1| Influenza A virus (A/New York/783/1993(H3N2)) ... 28.2 146
gb|CY013192.1| Influenza A virus (A/New York/782/1993(H3N2)) ... 28.2 146
gb|CY013184.1| Influenza A virus (A/New York/781/1993(H3N2)) ... 28.2 146
gb|CY013176.1| Influenza A virus (A/New York/755/1993(H3N2)) ... 28.2 146
gb|CY013168.1| Influenza A virus (A/New York/754/1993(H3N2)) ... 28.2 146
gb|CY013024.1| Influenza A virus (A/New York/753/1994(H3N2)) ... 28.2 146
gb|CY013016.1| Influenza A virus (A/New York/750/1994(H3N2)) ... 28.2 146
gb|CY013008.1| Influenza A virus (A/New York/741/1994(H3N2)) ... 28.2 146
gb|CY013000.1| Influenza A virus (A/New York/740/1994(H3N2)) ... 28.2 146
gb|CY012992.1| Influenza A virus (A/New York/739/1994(H3N2)) ... 28.2 146
gb|CY012984.1| Influenza A virus (A/New York/738/1994(H3N2)) ... 28.2 146
gb|CY012976.1| Influenza A virus (A/New York/736/1994(H3N2)) ... 28.2 146
gb|CY012960.1| Influenza A virus (A/New York/725/1994(H3N2)) ... 28.2 146
gb|CY012952.1| Influenza A virus (A/New York/724/1994(H3N2)) ... 28.2 146
gb|CY012944.1| Influenza A virus (A/New York/723/1994(H3N2)) ... 28.2 146
gb|CY012936.1| Influenza A virus (A/New York/718/1994(H3N2)) ... 28.2 146
gb|CY012784.1| Influenza A virus (A/New York/786/1993(H3N2)) ... 28.2 146
gb|CY012776.1| Influenza A virus (A/New York/779/1993(H3N2)) ... 28.2 146
gb|CY012768.1| Influenza A virus (A/New York/778/1993(H3N2)) ... 28.2 146
gb|CY012760.1| Influenza A virus (A/New York/777/1993(H3N2)) ... 28.2 146
gb|CY012752.1| Influenza A virus (A/New York/775/1993(H3N2)) ... 28.2 146
gb|CY012744.1| Influenza A virus (A/New York/771/1993(H3N2)) ... 28.2 146
gb|CY012736.1| Influenza A virus (A/New York/770/1993(H3N2)) ... 28.2 146
gb|CY012728.1| Influenza A virus (A/New York/767/1993(H3N2)) ... 28.2 146
gb|CY012584.1| Influenza A virus (A/New York/748/1994(H3N2)) ... 28.2 146
gb|CY012576.1| Influenza A virus (A/New York/747/1994(H3N2)) ... 28.2 146
gb|CY012568.1| Influenza A virus (A/New York/746/1994(H3N2)) ... 28.2 146
gb|CY012560.1| Influenza A virus (A/New York/714/1994(H3N2)) ... 28.2 146
gb|CY012552.1| Influenza A virus (A/New York/713/1994(H3N2)) ... 28.2 146
gb|CY012544.1| Influenza A virus (A/New York/710/1994(H3N2)) ... 28.2 146
gb|CY012536.1| Influenza A virus (A/New York/707/1994(H3N2)) ... 28.2 146
gb|CY012528.1| Influenza A virus (A/New York/705/1994(H3N2)) ... 28.2 146
gb|CY012448.1| Influenza A virus (A/New York/655/1994(H3N2)) ... 28.2 146
gb|CY012288.1| Influenza A virus (A/New York/734/1994(H3N2)) ... 28.2 146
gb|CY012280.1| Influenza A virus (A/New York/730/1994(H3N2)) ... 28.2 146
gb|CY012272.1| Influenza A virus (A/New York/729/1994(H3N2)) ... 28.2 146
gb|CY012264.1| Influenza A virus (A/New York/722/1994(H3N2)) ... 28.2 146
gb|CY012224.1| Influenza A virus (A/New York/657/1994(H3N2)) ... 28.2 146
gb|CY012184.1| Influenza A virus (A/New York/765/1993(H3N2)) ... 28.2 146
gb|CY012176.1| Influenza A virus (A/New York/764/1993(H3N2)) ... 28.2 146
gb|CY012168.1| Influenza A virus (A/New York/763/1993(H3N2)) ... 28.2 146
gb|CY012160.1| Influenza A virus (A/New York/762/1993(H3N2)) ... 28.2 146
gb|CY012152.1| Influenza A virus (A/New York/761/1993(H3N2)) ... 28.2 146
gb|CY012144.1| Influenza A virus (A/New York/760/1993(H3N2)) ... 28.2 146
gb|CY012136.1| Influenza A virus (A/New York/759/1993(H3N2)) ... 28.2 146
gb|CY012128.1| Influenza A virus (A/New York/758/1993(H3N2)) ... 28.2 146
gb|CY012120.1| Influenza A virus (A/New York/756/1993(H3N2)) ... 28.2 146
gb|CY011944.1| Influenza A virus (A/New York/752/1993(H3N2)) ... 28.2 146
gb|CY011936.1| Influenza A virus (A/New York/728/1994(H3N2)) ... 28.2 146
gb|CY011928.1| Influenza A virus (A/New York/727/1994(H3N2)) ... 28.2 146
gb|CY011920.1| Influenza A virus (A/New York/726/1994(H3N2)) ... 28.2 146
gb|CY011912.1| Influenza A virus (A/New York/721/1994(H3N2)) ... 28.2 146
gb|CY011904.1| Influenza A virus (A/New York/720/1994(H3N2)) ... 28.2 146
gb|CY011896.1| Influenza A virus (A/New York/719/1994(H3N2)) ... 28.2 146
gb|CY011880.1| Influenza A virus (A/New York/715/1994(H3N2)) ... 28.2 146
gb|CY011872.1| Influenza A virus (A/New York/712/1993(H3N2)) ... 28.2 146
gb|CY011864.1| Influenza A virus (A/New York/711/1994(H3N2)) ... 28.2 146
gb|CY011856.1| Influenza A virus (A/New York/709/1994(H3N2)) ... 28.2 146
gb|CY011576.1| Influenza A virus (A/New York/751/1993(H3N2)) ... 28.2 146
gb|CY011488.1| Influenza A virus (A/New York/654/1994(H3N2)) ... 28.2 146
gb|CY011480.1| Influenza A virus (A/Memphis/2/1990(H3N2)) seg... 28.2 146
gb|CY011472.1| Influenza A virus (A/Memphis/12/1985(H3N2)) se... 28.2 146
gb|CY011384.1| Influenza A virus (A/New York/732/1994(H3N2)) ... 28.2 146
gb|CY011376.1| Influenza A virus (A/New York/708/1994(H3N2)) ... 28.2 146
gb|CY011288.1| Influenza A virus (A/Memphis/5/1986(H3N2)) seg... 28.2 146
gb|CY010988.1| Influenza A virus (A/New York/733/1994(H3N2)) ... 28.2 146
gb|CY010756.1| Influenza A virus (A/Memphis/8/1988(H3N2)) seg... 28.2 146
gb|DQ508849.1| Influenza A virus (A/Leningrad/360/1986(H3N2))... 28.2 146
gb|DQ508833.1| Influenza A virus (A/Beijing/353/1989(H3N2)) h... 28.2 146
gb|DQ508825.1| Influenza A virus (A/Bangkok/01/1979(H3N2)) he... 28.2 146
gb|CY003752.2| Influenza A virus (A/Nanchang/0074/94(H3N2)) s... 28.2 146
gb|CY006203.1| Influenza A virus (A/Nanjing/13/80(H3N2)) segm... 28.2 146
gb|CY003736.1| Influenza A virus (A/Hong Kong/5/83(H3N2)) seg... 28.2 146
gb|CY003544.1| Influenza A virus (A/Hong Kong/7/87(H3N2)) seg... 28.2 146
gb|CY003520.1| Influenza A virus (A/Hong Kong/24/85(H3N2)) se... 28.2 146
gb|CY003512.1| Influenza A virus (A/Hong Kong/2/88(H3N2)) seg... 28.2 146
gb|CY003488.1| Influenza A virus (A/Hong Kong/46/80(H3N2)) se... 28.2 146
gb|AY589660.1| Influenza A virus (A/Kyongbuk/320/2002(H3N2)) ... 28.2 146
gb|AY589657.1| Influenza A virus (A/Incheon/260/2002(H3N2)) h... 28.2 146
gb|AY589655.1| Influenza A virus (A/Daejeon/258/2002(H3N2)) h... 28.2 146
gb|AY377546.1| Influenza A virus (A/Finland/250/93(H3N2)) hem... 28.2 146
gb|AY377545.1| Influenza A virus (A/Finland/269/93(H3N2)) hem... 28.2 146
gb|AY377544.1| Influenza A virus (A/Finland/270/93(H3N2)) hem... 28.2 146
gb|AY377543.1| Influenza A virus (A/Finland/273/93(H3N2)) hem... 28.2 146
gb|AY377542.1| Influenza A virus (A/Finland/331/93(H3N2)) hem... 28.2 146
gb|AY377541.1| Influenza A virus (A/Finland/321/93(H3N2)) hem... 28.2 146
gb|AY377540.1| Influenza A virus (A/Finland/205/92(H3N2)) hem... 28.2 146
gb|AY377539.1| Influenza A virus (A/Finland/245/92(H3N2)) hem... 28.2 146
gb|AY377538.1| Influenza A virus (A/Finland/190/92(H3N2)) hem... 28.2 146
gb|AY377537.1| Influenza A virus (A/Finland/191/92(H3N2)) hem... 28.2 146
gb|AF442483.1| Influenza A virus (A/Finland/280/93(H3N2)) hem... 28.2 146
gb|AY462237.1| Influenza A virus (A/Finland/256/93(H3N2)) hem... 28.2 146
gb|U49722.1|IAU49722 Influenza A virus (A/Florence/1/93(H3N2)... 28.2 146
gb|U77830.1|IAU77830 Influenza A virus (A/Christ Hospital/231... 28.2 146
gb|AC105095.6| Homo sapiens chromosome 8, clone CTD-2146I9, c... 28.2 146
gb|AY137206.1| Influenza A virus (A/Guangdong/28/94(H3N2)) he... 28.2 146
gb|CY009068.1| Influenza A virus (A/Memphis/2/85(H3N2)) segme... 28.2 146
gb|CY009052.1| Influenza A virus (A/Memphis/33/83(H3N2)) segm... 28.2 146
gb|CY009012.1| Influenza A virus (A/Nanchang/12/93(H3N2)) seg... 28.2 146
gb|AY661211.1| Influenza A virus (A/Singapore/3/93(H3N2)) hem... 28.2 146
gb|AY661204.1| Influenza A virus (A/Hongkong/55/94(H3N2)) hem... 28.2 146
gb|AY661180.1| Influenza A virus (A/Johannesburg/33/94(H3N2))... 28.2 146
gb|AY661179.1| Influenza A virus (A/Johannesburg/47/94(H3N2))... 28.2 146
gb|AY661178.1| Influenza A virus (A/Hongkong/56/94(H3N2)) hem... 28.2 146
gb|AY661175.1| Influenza A virus (A/Hongkong/1/94(H3N2)) hema... 28.2 146
gb|AY661173.1| Influenza A virus (A/Oslo/2219/93(H3N2)) hemag... 28.2 146
gb|AY661172.1| Influenza A virus (A/Lyon/23602/93(H3N2)) hema... 28.2 146
gb|AY661171.1| Influenza A virus (A/Lyon/22686/93(H3N2)) hema... 28.2 146
gb|AY661170.1| Influenza A virus (A/Lyon/1815/93(H3N2)) hemag... 28.2 146
gb|AY661168.1| Influenza A virus (A/Lyon/672/93(H3N2)) hemagg... 28.2 146
gb|AY661167.1| Influenza A virus (A/Netherlands/399/93(H3N2))... 28.2 146
gb|AY661166.1| Influenza A virus (A/Netherlands/398/93 (H3N2)... 28.2 146
gb|AY661165.1| Influenza A virus (A/Netherlands/440/93(H3N2))... 28.2 146
gb|AY661164.1| Influenza A virus (A/Netherlands/371/93 (H3N2)... 28.2 146
gb|AY661163.1| Influenza A virus (A/Netherlands/372/93(H3N2))... 28.2 146
gb|AY661162.1| Influenza A virus (A/Netherlands/357/93(H3N2))... 28.2 146
gb|AY661161.1| Influenza A virus (A/Stockholm/20/93(H3N2)) he... 28.2 146
gb|AY661160.1| Influenza A virus (A/Netherlands/241/93(H3N2))... 28.2 146
gb|AY661159.1| Influenza A virus (A/Shangdong/9/93(H3N2)) hem... 28.2 146
gb|AY661157.1| Influenza A virus (A/Victoria/104/93(H3N2)) he... 28.2 146
gb|AY661156.1| Influenza A virus (A/Shiga/6/93(H3N2)) hemaggl... 28.2 146
gb|AY661155.1| Influenza A virus (A/Akita/4/93(H3N2)) hemaggl... 28.2 146
gb|AY661154.1| Influenza A virus (A/Yamagata/62/93(H3N2)) hem... 28.2 146
gb|AY661153.1| Influenza A virus (A/Yamagata/61/93(H3N2)) hem... 28.2 146
gb|AY661152.1| Influenza A virus (A/Yamagata/56/93(H3N2)) hem... 28.2 146
gb|AY661151.1| Influenza A virus (A/Madrid/G252/93(H3N2)) hem... 28.2 146
gb|AY661150.1| Influenza A virus (A/Enschede/5458/93(H3N2)) h... 28.2 146
gb|AY661149.1| Influenza A virus (A/Netherlands/179/93(H3N2))... 28.2 146
gb|AY661148.1| Influenza A virus (A/Madrid/G130/93(H3N2)) hem... 28.2 146
gb|AY661147.1| Influenza A virus (A/Madrid/G122/93(H3N2)) hem... 28.2 146
gb|AY661146.1| Influenza A virus (A/Netherlands/165/93 (H3N2)... 28.2 146
gb|AY661145.1| Influenza A virus (A/Madrid/G109/93(H3N2)) hem... 28.2 146
gb|AY661144.1| Influenza A virus (A/Madrid/G102/93(H3N2)) hem... 28.2 146
gb|AY661143.1| Influenza A virus (A/Madrid/G101/93(H3N2)) hem... 28.2 146
gb|AY661142.1| Influenza A virus (A/Madrid/G116/93(H3N2)) hem... 28.2 146
gb|AY661141.1| Influenza A virus (A/Netherlands/126/93 (H3N2)... 28.2 146
gb|AY661140.1| Influenza A virus (A/Netherlands/115/93 (H3N2)... 28.2 146
gb|AY661139.1| Influenza A virus (A/Netherlands/101/93 (H3N2)... 28.2 146
gb|AY661138.1| Influenza A virus (A/Finland/247/92(H3N2)) hem... 28.2 146
gb|AY661137.1| Influenza A virus (A/Stockholm/13/92(H3N2)) he... 28.2 146
gb|AY661136.1| Influenza A virus (A/Stockholm/12/92(H3N2)) he... 28.2 146
gb|AY661135.1| Influenza A virus (A/Umea/2000/92(H3N2)) hemag... 28.2 146
gb|AY661134.1| Influenza A virus (A/Umea/1982/92(H3N2)) hemag... 28.2 146
gb|AY661133.1| Influenza A virus (A/Netherlands/17/93(H3N2)) ... 28.2 146
gb|AY661132.1| Influenza A virus (A/Paris/287/93(H3N2)) hemag... 28.2 146
gb|AY661131.1| Influenza A virus (A/Netherlands/3/93(H3N2)) h... 28.2 146
gb|AY661130.1| Influenza A virus (A/Beijing/32/92(H3N2)) hema... 28.2 146
gb|AY661129.1| Influenza A virus (A/Sendai/C273/92(H3N2)) hem... 28.2 146
gb|AY661128.1| Influenza A virus (A/South_Australia/27/92(H3N... 28.2 146
gb|AY661127.1| Influenza A virus (A/South_Australia/23/92(H3N... 28.2 146
gb|AY661126.1| Influenza A virus (A/South_Australia/8/92(H3N2... 28.2 146
gb|AY661125.1| Influenza A virus (A/Netherlands/938/92(H3N2))... 28.2 146
gb|AY661124.1| Influenza A virus (A/Houston/56798/92(H3N2)) h... 28.2 146
gb|AY661123.1| Influenza A virus (A/Houston/56941/92(H3N2)) h... 28.2 146
gb|AY661122.1| Influenza A virus (A/Houston/56829/92(H3N2)) h... 28.2 146
gb|AY661121.1| Influenza A virus (A/Stockholm/8/92(H3N2)) hem... 28.2 146
gb|AY661120.1| Influenza A virus (A/Stockholm/7/92(H3N2)) hem... 28.2 146
gb|AY661119.1| Influenza A virus (A/Stockholm/20/91(H3N2)) he... 28.2 146
gb|AY661118.1| Influenza A virus (A/Madrid/OV31/92(H3N2)) hem... 28.2 146
gb|AY661117.1| Influenza A virus (A/Madrid/G58/92(H3N2)) hema... 28.2 146
gb|AY661116.1| Influenza A virus (A/Tilburg/5957/92(H3N2)) he... 28.2 146
gb|AY661115.1| Influenza A virus (A/Amsterdam/4112/92(H3N2)) ... 28.2 146
gb|AY661114.1| Influenza A virus (A/Nijmegen/3129/92(H3N2)) h... 28.2 146
gb|AY661113.1| Influenza A virus (A/Nijmegen/3126/92(H3N2)) h... 28.2 146
gb|AY661112.1| Influenza A virus (A/Rotterdam/100540/92(H3N2)... 28.2 146
gb|AY661111.1| Influenza A virus (A/Geneva/5113/92(H3N2)) hem... 28.2 146
gb|AY661110.1| Influenza A virus (A/Finland/220/92(H3N2)) hem... 28.2 146
gb|AY661109.1| Influenza A virus (A/Finland/218/92(H3N2)) hem... 28.2 146
gb|AY661108.1| Influenza A virus (A/Netherlands/823/92 (H3N2)... 28.2 146
gb|AY661107.1| Influenza A virus (A/Lyon/chu24222/91(H3N2)) h... 28.2 146
gb|AY661106.1| Influenza A virus (A/Lyon/chu24103/91(H3N2)) h... 28.2 146
gb|AY661105.1| Influenza A virus (A/Lyon/chu23672/91(H3N2)) h... 28.2 146
gb|AY661104.1| Influenza A virus (A/Lyon/ons1337/91(H3N2)) he... 28.2 146
gb|AY661103.1| Influenza A virus (A/Lyon/ons1276/91(H3N2)) he... 28.2 146
gb|AY661102.1| Influenza A virus (A/Lyon/ons1373/91(H3N2)) he... 28.2 146
gb|AY661101.1| Influenza A virus (A/Lyon/ons1594/91(H3N2)) he... 28.2 146
gb|AY661100.1| Influenza A virus (A/Lyon/ons1189/91(H3N2)) he... 28.2 146
gb|AY661099.1| Influenza A virus (A/Lyon/1182/91(H3N2)) hemag... 28.2 146
gb|AY661098.1| Influenza A virus (A/Lyon/1149/91(H3N2)) hemag... 28.2 146
gb|AY661097.1| Influenza A virus (A/Netherlands/935/92(H3N2))... 28.2 146
gb|AY661096.1| Influenza A virus (A/Enschede/1285/92(H3N2)) h... 28.2 146
gb|AY661095.1| Influenza A virus (A/Paris/614/92(H3N2)) hemag... 28.2 146
gb|AY661094.1| Influenza A virus (A/Paris/597/92(H3N2)) hemag... 28.2 146
gb|AY661093.1| Influenza A virus (A/Paris/583/92(H3N2)) hemag... 28.2 146
gb|AY661092.1| Influenza A virus (A/Paris/564/92(H3N2)) hemag... 28.2 146
gb|AY661091.1| Influenza A virus (A/Paris/548/92(H3N2)) hemag... 28.2 146
gb|AY661090.1| Influenza A virus (A/Paris/512/92(H3N2)) hemag... 28.2 146
gb|AY661089.1| Influenza A virus (A/Paris/490/92(H3N2)) hemag... 28.2 146
gb|AY661088.1| Influenza A virus (A/Paris/467/92(H3N2)) hemag... 28.2 146
gb|AY661087.1| Influenza A virus (A/Paris/457/92(H3N2)) hemag... 28.2 146
gb|AY661086.1| Influenza A virus (A/Paris/424/92(H3N2)) hemag... 28.2 146
gb|AY661085.1| Influenza A virus (A/Paris/417/92(H3N2)) hemag... 28.2 146
gb|AY661084.1| Influenza A virus (A/Paris/407/92(H3N2)) hemag... 28.2 146
gb|AY661083.1| Influenza A virus (A/Paris/325/92(H3N2)) hemag... 28.2 146
gb|AY661082.1| Influenza A virus (A/Paris/320/92(H3N2)) hemag... 28.2 146
gb|AY661081.1| Influenza A virus (A/England/261/91(H3N2)) hem... 28.2 146
gb|AY661080.1| Influenza A virus (A/Netherlands/819/92(H3N2))... 28.2 146
gb|AY661079.1| Influenza A virus (A/Madrid/G12/91(H3N2)) hema... 28.2 146
gb|AY661078.1| Influenza A virus (A/Netherlands/816/91(H3N2))... 28.2 146
gb|AY661077.1| Influenza A virus (A/Geneva/6447/91(H3N2)) hem... 28.2 146
gb|AY661076.1| Influenza A virus (A/Canberra/1/91(H3N2)) hema... 28.2 146
gb|AY661075.1| Influenza A virus (A/England/260/91(H3N2)) hem... 28.2 146
gb|AY661074.1| Influenza A virus (A/Shanghai/24/90(H3N2)) hem... 28.2 146
gb|AY661073.1| Influenza A virus (A/Victoria/2/90(H3N2)) hema... 28.2 146
gb|AY661072.1| Influenza A virus (A/Seoul/1/90(H3N2)) hemaggl... 28.2 146
gb|AY661071.1| Influenza A virus (A/Atlanta/211/89(H3N2)) hem... 28.2 146
gb|AY661070.1| Influenza A virus (A/Memphis/5/90(H3N2)) hemag... 28.2 146
gb|AY661069.1| Influenza A virus (A/Memphis/2/90(H3N2)) hemag... 28.2 146
gb|AY661068.1| Influenza A virus (A/Netherlands/650/89 (H3N2)... 28.2 146
gb|AY661067.1| Influenza A virus (A/Netherlands/620/89 (H3N2)... 28.2 146
gb|AY661066.1| Influenza A virus (A/Beijing/353/89(H3N2)) hem... 28.2 146
gb|AY661065.1| Influenza A virus (A/Victoria/1/89(H3N2)) hema... 28.2 146
gb|AY661064.1| Influenza A virus (A/Singapore/53/89(H3N2)) he... 28.2 146
gb|AY661063.1| Influenza A virus (A/Singapore/40/89(H3N2)) he... 28.2 146
gb|AY661062.1| Influenza A virus (A/Singapore/36/89(H3N2)) he... 28.2 146
gb|AY661061.1| Influenza A virus (A/Singapore/35/89(H3N2)) he... 28.2 146
gb|AY661060.1| Influenza A virus (A/Singapore/34/89(H3N2)) he... 28.2 146
gb|AY661059.1| Influenza A virus (A/Hongkong/1/89(H3N2)) hema... 28.2 146
gb|AY661058.1| Influenza A virus (A/Wellington/5/89(H3N2)) he... 28.2 146
gb|AY661057.1| Influenza A virus (A/Geneva/5007/89(H3N2)) hem... 28.2 146
gb|AY661056.1| Influenza A virus (A/Stockholm/12/88(H3N2)) he... 28.2 146
gb|AY661055.1| Influenza A virus (A/England/427/88(H3N2)) hem... 28.2 146
gb|AY661054.1| Influenza A virus (A/Netherlands/450/88(H3N2))... 28.2 146
gb|AY661053.1| Influenza A virus (A/Colorado/2/86(H3N2)) hema... 28.2 146
gb|AY661052.1| Influenza A virus (A/Stockholm/10/85(H3N2)) he... 28.2 146
gb|AY661051.1| Influenza A virus (A/Guildford/V728/85(H3N2)) ... 28.2 146
gb|AY661050.1| Influenza A virus (A/Wellington/4/85(H3N2)) he... 28.2 146
gb|AY661049.1| Influenza A virus (A/Netherlands/330/85(H3N2))... 28.2 146
gb|AY661048.1| Influenza A virus (A/Netherlands/241/82(H3N2))... 28.2 146
gb|AY661047.1| Influenza A virus (A/Netherlands/209/80(H3N2))... 28.2 146
gb|AY661046.1| Influenza A virus (A/Rotterdam/577/80(H3N2)) h... 28.2 146
gb|AY661029.1| Influenza A virus (A/Netherlands/738/89(H3N2))... 28.2 146
gb|AY661025.1| Influenza A virus (A/Netherlands/233/82(H3N2))... 28.2 146
gb|AY661020.1| Influenza A virus (A/Netherlands/18/94(H3N2)) ... 28.2 146
gb|AY661016.1| Influenza A virus (A/Oslo/13676/83(H3N2)) hema... 28.2 146
gb|AY661015.1| Influenza A virus (A/Bilthoven/10684/82(H3N2))... 28.2 146
gb|AY661014.1| Influenza A virus (A/Bilthoven/4791/81(H3N2)) ... 28.2 146
gb|CY008668.1| Influenza A virus (A/Memphis/25/85(H3N2)) segm... 28.2 146
gb|CY006331.2| Influenza A virus (A/Nanchang/A2/94(H3N2)) seg... 28.2 146
gb|CY008660.1| Influenza A virus (A/Memphis/1/80(H3N2)) segme... 28.2 146
gb|CY008716.1| Influenza A virus (A/Memphis/11/86(H3N2)) segm... 28.2 146
gb|CY008724.1| Influenza A virus (A/Memphis/5/88(H3N2)) segme... 28.2 146
gb|CY008732.1| Influenza A virus (A/Memphis/15/88(H3N2)) segm... 28.2 146
gb|CY008740.1| Influenza A virus (A/Memphis/7/90(H3N2)) segme... 28.2 146
gb|AF405212.1| Influenza A virus (A/Oregon/4/80(H3N2)) hemagg... 28.2 146
gb|AF405211.1| Influenza A virus (A/Baylor5B/85(H3N2)) hemagg... 28.2 146
gb|AF405210.1| Influenza A virus (A/Baylor4A/83(H3N2)) hemagg... 28.2 146
gb|AF405209.1| Influenza A virus (A/Baylor3A/83(H3N2)) hemagg... 28.2 146
gb|AF405208.1| Influenza A virus (A/Baylor2A/81(H3N2)) hemagg... 28.2 146
gb|AF405207.1| Influenza A virus (A/Baylor1B/83(H3N2)) hemagg... 28.2 146
gb|AF405206.1| Influenza A virus (A/Baylor1A/81(H3N2)) hemagg... 28.2 146
gb|AY262745.1| Influenza A virus (A/Finland/300/93(H3N2)) hae... 28.2 146
gb|AY262744.1| Influenza A virus (A/Finland/246/92(H3N2)) hae... 28.2 146
emb|Z46416.1| Influenza A virus (A/Scotland/173/1993(H3N2)) m... 28.2 146
emb|Z46414.1| Influenza A virus (A/Scotland/160/1993(H3N2)) m... 28.2 146
emb|Z46411.1| Influenza A virus (A/Madrid/252/1993(H3N2)) mRN... 28.2 146
emb|Z46401.1| Influenza A virus (A/England/347/1993(H3N2)) mR... 28.2 146
emb|Z46400.1| Influenza A virus (A/England/346/1993(H3N2)) mR... 28.2 146
emb|Z46399.1| Influenza A virus (A/England/328/1993(H3N2)) mR... 28.2 146
emb|Z46398.1| Influenza A virus (A/England/289/1993(H3N2)) mR... 28.2 146
emb|Z46397.1| Influenza A virus (A/England/286/1993(H3N2)) mR... 28.2 146
emb|Z46396.1| Influenza A virus (A/England/284/1993(H3N2)) mR... 28.2 146
emb|Z46395.1| Influenza A virus (A/England/269/93(H3N2)) mRNA... 28.2 146
emb|Z46394.1| Influenza A virus (A/England/247/1993(H3N2)) mR... 28.2 146
emb|Z46391.1| Influenza A virus (A/Beijing/353/1989(H3N2)) mR... 28.2 146
emb|Z46417.1| Influenza A virus (A/Shangdong/9/1993(H3N2)) mR... 28.2 146
emb|Z46410.1| Influenza A virus (A/Hong Kong/23/1992(H3N2)) m... 28.2 146
emb|Z46409.1| Influenza A virus (A/Hong Kong/34/1990(H3N2)) m... 28.2 146
emb|Z46406.1| Influenza A virus (A/Guangdong/25/1993(H3N2)) m... 28.2 146
emb|Z46404.1| Influenza A virus (A/England/68/1994(H3N2)) mRN... 28.2 146
emb|Z46403.1| Influenza A virus (A/England/67/1994(H3N2)) mRN... 28.2 146
emb|Z46392.1| Influenza A virus (A/Beijing/32/1992(H3N2)) mRN... 28.2 146
emb|Z46412.1| Influenza A virus (A/Scotland/2/1993(H3N2)) mRN... 28.2 146
emb|Z46408.1| Influenza A virus (A/Hong Kong/2/1994(H3N2)) mR... 28.2 146
emb|Z46407.1| Influenza A virus (A/Hong Kong/1/1994(H3N2)) mR... 28.2 146
emb|Z46405.1| Influenza A virus (A/England/7/1994(H3N2)) mRNA... 28.2 146
emb|Z46393.1| Influenza A virus (A/England/1/1993(H3N2)) mRNA... 28.2 146
emb|X75800.1| Influenza A virus (Beijing/352/1989,(highgrowth... 28.2 146
gb|CY008468.1| Influenza A virus (A/Memphis/3/80(H3N2)) segme... 28.2 146
gb|AF008892.1|AF008892 Influenza A virus (A/Baylor6B/Texas/25... 28.2 146
gb|AF008894.1|AF008894 Influenza A virus (A/Baylor5A/Texas/12... 28.2 146
gb|AF008891.1|AF008891 Influenza A virus (A/Baylor3B/Texas/24... 28.2 146
gb|AF008866.1|AF008866 Influenza A virus (A/Baylor2B/Texas/25... 28.2 146
gb|AF386617.1|AF386617 Influenza A virus (A/Kangwon/93/99(H3N... 28.2 146
gb|AF386616.1|AF386616 Influenza A virus (A/Kangwon/88/99(H3N... 28.2 146
gb|AF386613.1|AF386613 Influenza A virus (A/Daegu/103/98(H3N2... 28.2 146
gb|AF386612.1|AF386612 Influenza A virus (A/Pusan/10/98(H3N2)... 28.2 146
gb|AF386611.1|AF386611 Influenza A virus (A/Seoul/47/91(H3N2)... 28.2 146
gb|AF386610.1|AF386610 Influenza A virus (A/Seoul/46/91(H3N2)... 28.2 146
gb|AF386609.1|AF386609 Influenza A virus (A/Seoul/44/91(H3N2)... 28.2 146
gb|AF386608.1|AF386608 Influenza A virus (A/Seoul/23/91(H3N2)... 28.2 146
gb|AF386607.1|AF386607 Influenza A virus (A/Seoul/22/90(H3N2)... 28.2 146
gb|AF386606.1|AF386606 Influenza A virus (A/Seoul/50/91(H3N2)... 28.2 146
gb|AF386605.1|AF386605 Influenza A virus (A/Seoul/16/89(H3N2)... 28.2 146
gb|AF386604.1|AF386604 Influenza A virus (A/Seoul/11/88(H3N2)... 28.2 146
gb|AY377933.1| Influenza A virus (A/swine/Changhua/72-10 clon... 28.2 146
emb|AJ252131.1|IVI252131 Influenza A virus ha gene for heamag... 28.2 146
emb|AJ252129.1|IVI252129 Influenza A virus (A/Berlin/6/88(H3N... 28.2 146
gb|AF233691.1|AF233691 Influenza A virus (A/Philippines/2/82(... 28.2 146
gb|AF201846.1|AF201846 Influenza A virus (A/Praha/2/83(HI min... 28.2 146
gb|AF201845.1|AF201845 Influenza A virus (A/Praha/2/83(HI plu... 28.2 146
gb|AF201844.1|AF201844 Influenza A virus (A/Belgium/2/81) hem... 28.2 146
gb|AF201843.1|AF201843 Influenza A virus (A/BANGKOK/1/79) hem... 28.2 146
gb|DQ336015.1| Influenza A virus (A/Brazil/006/00(H3N2)) hema... 28.2 146
gb|DQ336014.1| Influenza A virus (A/Brazil/009/00(H3N2)) hema... 28.2 146
gb|DQ336013.1| Influenza A virus (A/Brazil/010/00(H3N2)) hema... 28.2 146
gb|DQ336012.1| Influenza A virus (A/Brazil/015/00(H3N2)) hema... 28.2 146
gb|DQ336011.1| Influenza A virus (A/Brazil/008/00(H3N2)) hema... 28.2 146
gb|CY007835.1| Influenza A virus (A/Nanchang/A1/94(H3N2)) seg... 28.2 146
gb|AF180666.1| Influenza A virus (A/Virginia/1/91(H3N2)) hema... 28.2 146
gb|AF180570.1| Influenza A virus (A/Hong Kong/434/96(H3N2)) h... 28.2 146
gb|AF180567.1| Influenza A virus (A/Louisiana/1/93(H3N2)) hem... 28.2 146
gb|AF180566.1| Influenza A virus (A/Yokohama/73/92(H3N2)) hem... 28.2 146
gb|AF180565.1| Influenza A virus (A/Hebei/12/93(H3N2)) hemagg... 28.2 146
gb|AF180564.1| Influenza A virus (A/Tianjing/33/92(H3N2)) hem... 28.2 146
dbj|D21173.1|FLAHAH2 Influenza A virus (A/Sichuan/2/87(H3N2))... 28.2 146
dbj|D30665.1|FLASPH14 Influenza A virus (A/Yokohama/73/92(H3N... 28.2 146
dbj|D30663.1|FLASPH2 Influenza A virus (A/Washington/15/91(H3... 28.2 146
dbj|D30662.1|FLASPH1 Influenza A virus (A/Brazil/02/91(H3N2))... 28.2 146
dbj|D30664.1|FLAH13 Influenza A virus (A/Tianjin/33/92(H3N2))... 28.2 146
dbj|D30668.1|FLAH5 Influenza A virus (A/Hebei/12/93(H3N2)) ge... 28.2 146
gb|AF008909.1|AF008909 Influenza A virus (Uruguay/3/88(H3N2))... 28.2 146
gb|AF008908.1|AF008908 Influenza A virus (A/Cheng-mei/4/85(H3... 28.2 146
gb|AF008906.1|AF008906 Influenza A virus (A/Tonga/23/85(H3N2)... 28.2 146
gb|AF008905.1|AF008905 Influenza A virus (A/Christ_Church/2/8... 28.2 146
gb|AF008904.1|AF008904 Influenza A virus (A/Yokohama/C5/85(H3... 28.2 146
gb|AF008903.1|AF008903 Influenza A virus (A/Leningrad/360/86(... 28.2 146
gb|AF008902.1|AF008902 Influenza A virus (A/Yamagata/96/85(H3... 28.2 146
gb|AF008901.1|AF008901 Influenza A virus (A/Bangkok/25/(H3N2)... 28.2 146
gb|AF008900.1|AF008900 Influenza A virus (A/Gumma/346/(H3N2))... 28.2 146
gb|AF008899.1|AF008899 Influenza A virus (A/Bangkok/(H3N2)) h... 28.2 146
gb|AF008898.1|AF008898 Influenza A virus (A/Stockholm/8/(H3N2... 28.2 146
gb|AF008897.1|AF008897 Influenza A virus (A/Czechoslovakia/4/... 28.2 146
gb|AF008896.1|AF008896 Influenza A virus (A/Christ_Church/4/(... 28.2 146
gb|AF008895.1|AF008895 Influenza A virus (A/Christ_Church/1/(... 28.2 146
gb|AF008893.1|AF008893 Influenza A virus (A/Mississippi/1/(H3... 28.2 146
gb|AF008889.1|AF008889 Influenza A virus (A/Guizhou/1/(H3N2))... 28.2 146
gb|AF008888.1|AF008888 Influenza A virus (A/Victoria/7/(H3N2)... 28.2 146
gb|AF008887.1|AF008887 Influenza A virus (A/Qingdao/10/(H3N2)... 28.2 146
gb|AF008886.1|AF008886 Influenza A virus (A/Shanghai/11/(H3N2... 28.2 146
gb|AF008885.1|AF008885 Influenza A virus (A/Los_Angeles/(H3N2... 28.2 146
gb|AF008884.1|AF008884 Influenza A virus (A/Sichuan/2/(H3N2))... 28.2 146
gb|AF008883.1|AF008883 Influenza A virus (A/Guangdong/9/(H3N2... 28.2 146
gb|AF008882.1|AF008882 Influenza A virus (A/Sydney/1/(H3N2)) ... 28.2 146
gb|AF008881.1|AF008881 Influenza A virus (A/Kobe/768/88(H3N2)... 28.2 146
gb|AF008880.1|AF008880 Influenza A virus (A/Chiba/38/88(H3N2)... 28.2 146
gb|AF008879.1|AF008879 Influenza A virus (A/Tokyo/1276/(H3N2)... 28.2 146
gb|AF008878.1|AF008878 Influenza A virus (A/Tokyo/1275/(H3N2)... 28.2 146
gb|AF008877.1|AF008877 Influenza A virus (A/Yamaneshi/497/(H3... 28.2 146
gb|AF008876.1|AF008876 Influenza A virus (A/Fukuoka/C29/(H3N2... 28.2 146
gb|AF008875.1|AF008875 Influenza A virus (A/Connecticut/4/(H3... 28.2 146
gb|AF008871.1|AF008871 Influenza A virus (A/Texas/17988/84(H3... 28.2 146
gb|AF008870.1|AF008870 Influenza A virus (A/Texas/18733/84(H3... 28.2 146
gb|AF008869.1|AF008869 Influenza A virus (A/Texas/18088/84(H3... 28.2 146
gb|AF008868.1|AF008868 Influenza A virus (A/Oita/3/83(H3N2)) ... 28.2 146
gb|AF008867.1|AF008867 Influenza A virus (A/Caen/1/84(H3N2)) ... 28.2 146
gb|AF008865.1|AF008865 Influenza A virus (A/Stockholm/4/(H3N2... 28.2 146
gb|AF008864.1|AF008864 Influenza A virus (A/USSR/26/(H3N2)) h... 28.2 146
gb|AF008863.1|AF008863 Influenza A virus (A/Alaska/84(H3N2)) ... 28.2 146
gb|AF008862.1|AF008862 Influenza A virus (A/Guizhou/3/(H3N2))... 28.2 146
gb|AF008860.1|AF008860 Influenza A virus (A/New_York/15/94(H3... 28.2 146
gb|AF008859.1|AF008859 Influenza A virus (A/Santiago/7198/94(... 28.2 146
gb|AF008858.1|AF008858 Influenza A virus (A/Wuzhou/1/94(H3N2)... 28.2 146
gb|AF008857.1|AF008857 Influenza A virus (A/Pennsylvania/9/93... 28.2 146
gb|AF008856.1|AF008856 Influenza A virus (A/Harbin/3/94(H3N2)... 28.2 146
gb|AF008854.1|AF008854 Influenza A virus (A/Waikato/20/93(H3N... 28.2 146
gb|AF008852.1|AF008852 Influenza A virus (A/Washington/41/93(... 28.2 146
gb|AF008851.1|AF008851 Influenza A virus (A/Wyoming/1/93(H3N2... 28.2 146
gb|AF008850.1|AF008850 Influenza A virus (A/Washington/26/93(... 28.2 146
gb|AF008849.1|AF008849 Influenza A virus (A/North_Carolina/93... 28.2 146
gb|AF008848.1|AF008848 Influenza A virus (A/Guangdong/27/94(H... 28.2 146
gb|AF008847.1|AF008847 Influenza A virus (A/New_York/38/93(H3... 28.2 146
gb|AF008846.1|AF008846 Influenza A virus (A/Texas/57/93(H3N2)... 28.2 146
gb|AF008845.1|AF008845 Influenza A virus (A/New_York/3/93(H3N... 28.2 146
gb|AF008844.1|AF008844 Influenza A virus (A/Stockholm/1/93(H3... 28.2 146
gb|AF008843.1|AF008843 Influenza A virus (A/Spain/190/93(H3N2... 28.2 146
gb|AF008842.1|AF008842 Influenza A virus (A/Spain/125/93(H3N2... 28.2 146
gb|AF008841.1|AF008841 Influenza A virus (A/Georgia/3/93(H3N2... 28.2 146
gb|AF008839.1|AF008839 Influenza A virus (A/New_York/26/93(H3... 28.2 146
gb|AF008838.1|AF008838 Influenza A virus (A/Alaska/18/93(H3N2... 28.2 146
gb|AF008837.1|AF008837 Influenza A virus (A/Christ_Church/8/9... 28.2 146
gb|AF008836.1|AF008836 Influenza A virus (A/Ann_Arbor/3/93(H3... 28.2 146
gb|AF008834.1|AF008834 Influenza A virus (A/Netherlands/372/9... 28.2 146
gb|AF008833.1|AF008833 Influenza A virus (A/California/5/93(H... 28.2 146
gb|AF008832.1|AF008832 Influenza A virus (A/Vermont/3/94(H3N2... 28.2 146
gb|AF008831.1|AF008831 Influenza A virus (A/Romania/182/94(H3... 28.2 146
gb|AF008830.1|AF008830 Influenza A virus (A/Louisiana/6/93(H3... 28.2 146
gb|AF008829.1|AF008829 Influenza A virus (A/Louisiana/4/93(H3... 28.2 146
gb|AF008828.1|AF008828 Influenza A virus (A/Guangdong/25/93(H... 28.2 146
gb|AF008827.1|AF008827 Influenza A virus (A/Argentina/3105/93... 28.2 146
gb|AF008826.1|AF008826 Influenza A virus (A/Romania/160/94(H3... 28.2 146
gb|AF008825.1|AF008825 Influenza A virus (A/Akita/1/94(H3N2))... 28.2 146
gb|AF008824.1|AF008824 Influenza A virus (A/Hong_Kong/23/92(H... 28.2 146
gb|AF008822.1|AF008822 Influenza A virus (A/Nanchang/3396/93(... 28.2 146
gb|AF008821.1|AF008821 Influenza A virus (A/New_York/13/93(H3... 28.2 146
gb|AF008820.1|AF008820 Influenza A virus (A/Shangdong/9/93(H3... 28.2 146
gb|AF008819.1|AF008819 Influenza A virus (A/Sapporro/92(H3N2)... 28.2 146
gb|AF008818.1|AF008818 Influenza A virus (A/Paris/688/93(H3N2... 28.2 146
gb|AF008817.1|AF008817 Influenza A virus (A/California/271/92... 28.2 146
gb|AF008816.1|AF008816 Influenza A virus (A/Qingdao/53/92(H3N... 28.2 146
gb|AF008815.1|AF008815 Influenza A virus (A/Hawaii/3/92(H3N2)... 28.2 146
gb|AF008814.1|AF008814 Influenza A virus (A/Alaska/9/92(H3N2)... 28.2 146
gb|AF008813.1|AF008813 Influenza A virus (A/Beijing/46/92(H3N... 28.2 146
gb|AF008812.1|AF008812 Influenza A virus (A/Beijing/32/92(H3N... 28.2 146
gb|AF008811.1|AF008811 Influenza A virus (A/Victoria/1/93(H3N... 28.2 146
gb|AF008810.1|AF008810 Influenza A virus (A/Indonesia/3109/91... 28.2 146
gb|AF008809.1|AF008809 Influenza A virus (A/Harbin/15/92(H3N2... 28.2 146
gb|AF008807.1|AF008807 Influenza A virus (A/Ningxia/10/93(H3N... 28.2 146
gb|AF008806.1|AF008806 Influenza A virus (A/Sichuan/4/93(H3N2... 28.2 146
gb|AF008805.1|AF008805 Influenza A virus (A/Wuzhou/4/93(H3N2)... 28.2 146
gb|AF008804.1|AF008804 Influenza A virus (A/Russia/58/93(H3N2... 28.2 146
gb|AF008803.1|AF008803 Influenza A virus (A/Nanchang/58/93(H3... 28.2 146
gb|AF008802.1|AF008802 Influenza A virus (A/Nanchang/3332/93(... 28.2 146
gb|AF008801.1|AF008801 Influenza A virus (A/Nangchang/12/93(H... 28.2 146
gb|AF008800.1|AF008800 Influenza A virus (A/Russia/46967/94(H... 28.2 146
gb|AF008799.1|AF008799 Influenza A virus (A/France/1109/94(H3... 28.2 146
gb|AF008798.1|AF008798 Influenza A virus (A/New_York/64/93(H3... 28.2 146
gb|AF008797.1|AF008797 Influenza A virus (A/New_York/63/93(H3... 28.2 146
gb|AF008796.1|AF008796 Influenza A virus (A/New_York/42/95(H3... 28.2 146
gb|AF008795.1|AF008795 Influenza A virus (A/New_York/16/94(H3... 28.2 146
gb|AF008791.1|AF008791 Influenza A virus (A/New_York/17/94(H3... 28.2 146
gb|AF008790.1|AF008790 Influenza A virus (A/Argentina/3779/94... 28.2 146
gb|AF008788.1|AF008788 Influenza A virus (A/Pennsylvania/7/94... 28.2 146
gb|AF008774.1|AF008774 Influenza A virus (A/Johannesburg/33/9... 28.2 146
gb|AF008773.1|AF008773 Influenza A virus (A/Hong_Kong/55/94(H... 28.2 146
gb|AF008772.1|AF008772 Influenza A virus (A/Hong_Kong/1/94(H3... 28.2 146
gb|AF008766.1|AF008766 Influenza A virus (A/Guangxi/42/95(H3N... 28.2 146
dbj|D49967.1|FLAH3N2I Influenza A virus (A/Shiga/2/91(H3N2)) ... 28.2 146
dbj|D49966.1|FLAH3N2H Influenza A virus (A/Bangkok/144/90(H3N... 28.2 146
dbj|D49965.1|FLAH3N2G Influenza A virus (A/Bangkok/139/90(H3N... 28.2 146
dbj|D49964.1|FLAH3N2F Influenza A virus (A/OMS/7026/89(H3N2))... 28.2 146
dbj|D49963.1|FLAH3N2E Influenza A virus (A/Guizhou/54/89(H3N2... 28.2 146
dbj|D49962.1|FLAH3N2D Influenza A virus (A/Bangkok/235/89(H3N... 28.2 146
dbj|D49961.1|FLAH3N2C Influenza A virus (A/Beijing/352/89(H3N... 28.2 146
dbj|D49960.1|FLAH3N2B Influenza A virus (A/Hokkaido/20/89(H3N... 28.2 146
dbj|D49959.1|FLAH3N2 Influenza A virus (A/Sichuan/02/87(H3N2)... 28.2 146
gb|CY007627.1| Influenza A virus (A/Memphis/1/81(H3N2)) segme... 28.2 146
gb|CY007619.1| Influenza A virus (A/Memphis/4/80(H3N2)) segme... 28.2 146
dbj|AB043708.1| Influenza A virus (A/Aichi/2/94(H3N2)) HA gen... 28.2 146
dbj|AB043707.1| Influenza A virus (A/Aichi/4/93(H3N2)) HA gen... 28.2 146
dbj|AB043706.1| Influenza A virus (A/Chiba/54/92(H3N2)) HA ge... 28.2 146
dbj|AB043705.1| Influenza A virus (A/Kamata/14/91(H3N2)) HA g... 28.2 146
gb|CY003352.1| Influenza A virus (A/Memphis/13/88(H3N2)) segm... 28.2 146
gb|U77840.1|IAU77840 Influenza A virus (A/Tottori/872AM2AL3/1... 28.2 146
gb|U77839.1|IAU77839 Influenza A virus (A/Tottori/849AM2AL3/1... 28.2 146
gb|U77838.1|IAU77838 Influenza A virus (A/Tottori/872AM1AL3/1... 28.2 146
gb|U77837.1|IAU77837 Influenza A virus (A/Tottori/849AM1AL3/1... 28.2 146
gb|U77836.1|IAU77836 Influenza A virus (A/Tottori/872AM4/1994... 28.2 146
gb|U77835.1|IAU77835 Influenza A virus (A/Tottori/849AM4/1994... 28.2 146
gb|U77834.1|IAU77834 Influenza A virus (A/Tottori/872AM2/1994... 28.2 146
gb|U77833.1|IAU77833 Influenza A virus (A/Tottori/849AM2/1994... 28.2 146
gb|U77832.1|IAU77832 Influenza A virus (A/Tottori/872K4/1994(... 28.2 146
gb|U77831.1|IAU77831 Influenza A virus (A/Tottori/849K4/1994)... 28.2 146
gb|AF008704.1|AF008704 Influenza A virus (A/Russia/31/93(H3N2... 28.2 146
gb|AF008703.1|AF008703 Influenza A virus (A/Taiwan/1143/91(H3... 28.2 146
gb|AF008702.1|AF008702 Influenza A virus (A/Paris/80/91(H3N2)... 28.2 146
gb|AF008701.1|AF008701 Influenza A virus (A/Spain/118/93(H3N2... 28.2 146
gb|AF008700.1|AF008700 Influenza A virus (A/Victoria/29/92(H3... 28.2 146
gb|AF008699.1|AF008699 Influenza A virus (A/Wellington/66/92(... 28.2 146
gb|AF008698.1|AF008698 Influenza A virus (A/Beijing/47/92(H3N... 28.2 146
gb|AF008697.1|AF008697 Influenza A virus (A/Victoria/68/92(H3... 28.2 146
gb|AF008696.1|AF008696 Influenza A virus (A/South_Australia/6... 28.2 146
gb|AF008695.1|AF008695 Influenza A virus (A/Singapore/8/92(H3... 28.2 146
gb|AF008694.1|AF008694 Influenza A virus (A/Indonesia/3946/92... 28.2 146
gb|AF008693.1|AF008693 Influenza A virus (A/Umea/2/92(H3N2)) ... 28.2 146
gb|AF008692.1|AF008692 Influenza A virus (A/Umea/1/92(H3N2)) ... 28.2 146
gb|AF008691.1|AF008691 Influenza A virus (A/Kasauli/149/92(H3... 28.2 146
gb|AF008690.1|AF008690 Influenza A virus (A/India/237/93(H3N2... 28.2 146
gb|AF008689.1|AF008689 Influenza A virus (A/India/236/93(H3N2... 28.2 146
gb|AF008688.1|AF008688 Influenza A virus (A/England/261/91(H3... 28.2 146
gb|AF008687.1|AF008687 Influenza A virus (A/Brazil/91(H3N2)) ... 28.2 146
gb|AF008685.1|AF008685 Influenza A virus (A/Hawaii/1/91(H3N2)... 28.2 146
gb|AF008684.1|AF008684 Influenza A virus (A/Beijing/353/89(H3... 28.2 146
gb|AF008683.1|AF008683 Influenza A virus (A/Puerto_Rico/1/90(... 28.2 146
gb|AF008682.1|AF008682 Influenza A virus (A/Shiga/2/91(H3N2))... 28.2 146
gb|AF008681.1|AF008681 Influenza A virus (A/Indiana/3/91(H3N2... 28.2 146
gb|AF008680.1|AF008680 Influenza A virus (A/South_Australia/3... 28.2 146
gb|AF008679.1|AF008679 Influenza A virus (A/Pennsylvania/09/9... 28.2 146
gb|AF008678.1|AF008678 Influenza A virus (A/Seoul/45/91(H3N2)... 28.2 146
gb|AF008677.1|AF008677 Influenza A virus (A/Sophia/155/93(H3N... 28.2 146
gb|AF008676.1|AF008676 Influenza A virus (A/Washington/15/91(... 28.2 146
gb|AF008675.1|AF008675 Influenza A virus (A/South_Dakota/1/91... 28.2 146
gb|AF008674.1|AF008674 Influenza A virus (A/Mexico/3255/94(H3... 28.2 146
gb|AF008673.1|AF008673 Influenza A virus (A/Victoria/5/89(H3N... 28.2 146
gb|AF008672.1|AF008672 Influenza A virus (A/Czechoslovakia/19... 28.2 146
gb|AF008671.1|AF008671 Influenza A virus (A/England/88(H3N2))... 28.2 146
gb|AF008670.1|AF008670 Influenza A virus (A/Beijing/4/89(H3N2... 28.2 146
gb|AF008669.1|AF008669 Influenza A virus (A/Shanghai/1/89(H3N... 28.2 146
gb|AF008668.1|AF008668 Influenza A virus (A/Shanghai/16/89(H3... 28.2 146
gb|AF008667.1|AF008667 Influenza A virus (A/Guangdong/89(H3N2... 28.2 146
gb|AF008666.1|AF008666 Influenza A virus (A/Guangdong/39/89(H... 28.2 146
gb|AF008665.1|AF008665 Influenza A virus (A/Guizhou/54/89(H3N... 28.2 146
gb|AF008664.1|AF008664 Influenza A virus (A/England/648/89(H3... 28.2 146
gb|AF008663.1|AF008663 Influenza A virus (A/Sichuan/89(H3N2))... 28.2 146
gb|AF008662.1|AF008662 Influenza A virus (A/Beijing/57/89(H3N... 28.2 146
gb|AF008661.1|AF008661 Influenza A virus (A/Singapore/91(H3N2... 28.2 146
gb|AF008660.1|AF008660 Influenza A virus (A/Shanghai/24/90(H3... 28.2 146
gb|AF008659.1|AF008659 Influenza A virus (A/Kasauli/206/91(H3... 28.2 146
gb|AF008658.1|AF008658 Influenza A virus (A/Hong Kong/34/90(H... 28.2 146
gb|AF008657.1|AF008657 Influenza A virus (A/Paris/1/92(H3N2))... 28.2 146
gb|AF008656.1|AF008656 Influenza A virus (A/Perth/01/92(H3N2)... 28.2 146
gb|U97740.1|U97740 Influenza A virus (A/Beijing/353/89(H3)) h... 28.2 146
gb|L76035.1|FLAHMG Influenza A virus (A/Beijing/32/1992(H3N2)... 28.2 146
gb|L76037.1|FLAHMGB Influenza A virus (A/Shangdong/9/1993(H3N... 28.2 146
gb|L76036.1|FLAHMGA Influenza A virus (A/Beijing/353/1989(H3N... 28.2 146
gb|L75988.1|FLASEG4N Influenza A virus (A/Finland/296/1993(H3... 28.2 146
gb|L75987.1|FLASEG4M Influenza A virus (A/Finland/295/1993(H3... 28.2 146
gb|L75986.1|FLASEG4L Influenza A virus (A/Finland/292/1993(H3... 28.2 146
gb|L75985.1|FLASEG4K Influenza A virus (A/Finland/278/1993(H3... 28.2 146
gb|L75984.1|FLASEG4J Influenza A virus (A/Finland/276/1993(H3... 28.2 146
gb|L75983.1|FLASEG4I Influenza A virus (A/Finland/274/1993(H3... 28.2 146
gb|L75982.1|FLASEG4H Influenza A virus (A/Finland/263/1993(H3... 28.2 146
gb|L75981.1|FLASEG4G Influenza A virus (A/Finland/247/1992(H3... 28.2 146
gb|L75980.1|FLASEG4F Influenza A virus (A/Finland/239/1992(H3... 28.2 146
gb|L75979.1|FLASEG4E Influenza A virus (A/Finland/211/1992(H3... 28.2 146
gb|L75978.1|FLASEG4D Influenza A virus (A/Finland/189/1991(H3... 28.2 146
gb|L75977.1|FLASEG4C Influenza A virus (A/Finland/144/1990(H3... 28.2 146
gb|L75976.1|FLASEG4B Influenza A virus (A/Finland/133/1990(H3... 28.2 146
gb|L75975.1|FLASEG4A Influenza A virus (A/Finland/110/1989(H3... 28.2 146
gb|U48443.1|IAU48443 Influenza A virus (A/Akita/1/94(H3N2)) h... 28.2 146
gb|U48442.1|IAU48442 Influenza A virus (A/Guandong/28/1994(H3... 28.2 146
gb|U48439.1|IAU48439 Influenza A virus (A/Sendai/c182/1994(H3... 28.2 146
dbj|D43792.1|FLAHG Influenza A virus (A/sw/Obihiro/3/1993(H3N... 28.2 146
dbj|D43791.1|FLAHF Influenza A virus (A/sw/Obihiro/2/1993(H3N... 28.2 146
dbj|D43790.1|FLAHE Influenza A virus (A/sw/Obihiro/1/1993(H3N... 28.2 146
dbj|D43789.1|FLAHD Influenza A virus (A/Hokkaido/2/1993(H3N2)... 28.2 146
dbj|D43788.1|FLAHC Influenza A virus (A/Hokkaido/1/1993(H3N2)... 28.2 146
dbj|D43787.1|FLAHB Influenza A virus (A/Hokkaido/1/1988(H3N2)... 28.2 146
dbj|D43786.1|FLAHA Influenza A virus (A/Beijin/352/1989(H3N2)... 28.2 146
dbj|D86469.1| Influenza A virus (A/SW/Obihiro/1/1994(H3N2)) g... 28.2 146
gb|L18996.1|FLAGUHA1 Influenza A virus (A/Guangdong/39/1989(H... 28.2 146
gb|L19004.1|FLAGUANGHA Influenza A virus (A/Guangdong/39/1989... 28.2 146
gb|L18998.1|FLAGUAHA1 Influenza A virus (A/Guangdong/39/1989(... 28.2 146
gb|L19001.1|FLAENGLHA Influenza A virus (A/England/427/1988(H... 28.2 146
gb|L18997.1|FLAENGHA1 Influenza A virus (A/England/427/1988(H... 28.2 146
gb|L18994.1|FLABEIHA1 Influenza A virus (A/Beijing/4/1989(H3N... 28.2 146
gb|L19000.1|FLABAIJHA Influenza A virus (A/Beijing/4/1989(H3N... 28.2 146
gb|L19002.1|FLAPHILHA Influenza A virus (A/Philippines/2/1982... 28.2 146
gb|L19003.1|FLAMISSHA Influenza A virus (A/Mississippi/1/1985... 28.2 146
gb|CY006347.1| Influenza A virus (A/Nanchang/58/93(H3N2)) seg... 28.2 146
gb|CY006339.1| Influenza A virus (A/Nanchang/0058/94(H3N2)) s... 28.2 146
gb|CY006315.1| Influenza A virus (A/Hong Kong/14/83(H3N2)) se... 28.2 146
gb|M21648.1|FLAM686HA Influenza A virus (A/Mem/6/1986(H3N2)) ... 28.2 146
gb|L19412.1|FLAHASHANZ Influenza A virus (A/Shanghai/11/1987/... 28.2 146
gb|L19413.1|FLAHASHANY Influenza A virus (A/Shanghai/11/1987/... 28.2 146

HenryN · Mar 28, 2008

Re: Homologous Recombination is Very Rare or Absent in Human Influenza A Virus

gsgs said:
..and the headline summarizes the abstract.
Even if there were strong evidence for short recombinations (<100),
there should also be some more longer ones.
This is unusual, that I can't find them in human sequences.

Here is a full travel log for tandem changes (still not in chronological order, but pretty easy to read). Tandem changes are will outside of the "conincidence" or "radom mutation" range. Recombination is the name of the game.

gb|EU430047.1| Influenza A virus (A/Shiraz/02/2006(H3N2)) hem... 50.1 8e-07
gb|EU430044.1| Influenza A virus (A/Shiraz/05/2006(H3N2)) hem... 50.1 8e-07
gb|EU430043.1| Influenza A virus (A/Shiraz/29/2006(H3N2)) hem... 50.1 8e-07
gb|EU430042.1| Influenza A virus (A/Shiraz/37/2006(H3N2)) non... 50.1 8e-07
gb|EU430041.1| Influenza A virus (A/Shiraz/54/2006(H3N2)) hem... 50.1 8e-07
gb|EU430040.1| Influenza A virus (A/Shiraz/13/2006(H3N2)) hem... 50.1 8e-07
gb|EU311407.1| Influenza A virus (A/Tehran/27/2006(H3N2)) hem... 50.1 8e-07
gb|EU311405.1| Influenza A virus (A/Tehran/16/2006(H3N2)) hem... 50.1 8e-07
gb|EF409246.1| Influenza A virus (A/swine/Karrenzien/2/87(H3N... 50.1 8e-07
gb|EF626619.1| Influenza A virus (A/Phillipines/2/1982(H3N2))... 50.1 8e-07
gb|EF626611.1| Influenza A virus (A/Bangkok/2/1979(H3N2)) seg... 50.1 8e-07
gb|EF626610.1| Influenza A virus (A/Bangkok/1/1979(H3N2)) seg... 50.1 8e-07
gb|DQ975254.1| Influenza A virus (A/swine/Italy/7/1981(H3N2))... 50.1 8e-07
gb|CY020333.1| Influenza A virus (A/Memphis/3/1986(H3N2)) seg... 50.1 8e-07
gb|EF456784.1| Influenza A virus (A/England/121/1995(H3N2)) s... 50.1 8e-07
gb|EF456783.1| Influenza A virus (A/England/79/1994(H3N2)) se... 50.1 8e-07
gb|EF118174.1| Influenza A virus (A/swine/Jena/3765/1989(H3N2... 50.1 8e-07
gb|CY017307.1| Influenza A virus (A/New York/704/1994(H3N2)) ... 50.1 8e-07
gb|CY016483.1| Influenza A virus (A/New York/800/1993(H3N2)) ... 50.1 8e-07
gb|CY016427.1| Influenza A virus (A/New York/706/1993(H3N2)) ... 50.1 8e-07
gb|CY016060.1| Influenza A virus (A/Memphis/2/1986(H3N2)) seg... 50.1 8e-07
gb|CY013789.1| Influenza A virus (A/New York/803/1993(H3N2)) ... 50.1 8e-07
gb|CY013773.1| Influenza A virus (A/New York/801/1993(H3N2)) ... 50.1 8e-07
gb|CY013765.1| Influenza A virus (A/New York/799/1993(H3N2)) ... 50.1 8e-07
gb|CY013757.1| Influenza A virus (A/New York/798/1993(H3N2)) ... 50.1 8e-07
gb|CY013749.1| Influenza A virus (A/New York/797/1993(H3N2)) ... 50.1 8e-07
gb|CY013741.1| Influenza A virus (A/New York/795/1993(H3N2)) ... 50.1 8e-07
gb|CY013725.1| Influenza A virus (A/New York/792/1993(H3N2)) ... 50.1 8e-07
gb|CY013709.1| Influenza A virus (A/New York/790/1993(H3N2)) ... 50.1 8e-07
gb|CY013677.1| Influenza A virus (A/New York/784/1993(H3N2)) ... 50.1 8e-07
gb|CY013653.1| Influenza A virus (A/New York/774/1993(H3N2)) ... 50.1 8e-07
gb|CY013629.1| Influenza A virus (A/New York/769/1993(H3N2)) ... 50.1 8e-07
gb|CY014151.1| Influenza A virus (A/New York/796/1993(H3N2)) ... 50.1 8e-07
gb|CY014143.1| Influenza A virus (A/New York/793/1993(H3N2)) ... 50.1 8e-07
gb|CY013887.1| Influenza A virus (A/New York/717/1994(H3N2)) ... 50.1 8e-07
gb|CY013781.1| Influenza A virus (A/New York/802/1993(H3N2)) ... 50.1 8e-07
gb|CY013733.1| Influenza A virus (A/New York/794/1993(H3N2)) ... 50.1 8e-07
gb|CY013717.1| Influenza A virus (A/New York/791/1993(H3N2)) ... 50.1 8e-07
gb|CY013701.1| Influenza A virus (A/New York/789/1993(H3N2)) ... 50.1 8e-07
gb|CY013693.1| Influenza A virus (A/New York/788/1993(H3N2)) ... 50.1 8e-07
gb|CY013685.1| Influenza A virus (A/New York/787/1993(H3N2)) ... 50.1 8e-07
gb|CY013661.1| Influenza A virus (A/New York/776/1993(H3N2)) ... 50.1 8e-07
gb|CY013645.1| Influenza A virus (A/New York/773/1993(H3N2)) ... 50.1 8e-07
gb|CY013637.1| Influenza A virus (A/New York/772/1993(H3N2)) ... 50.1 8e-07
gb|CY013621.1| Influenza A virus (A/New York/768/1993(H3N2)) ... 50.1 8e-07
gb|CY013613.1| Influenza A virus (A/New York/766/1993(H3N2)) ... 50.1 8e-07
gb|CY013605.1| Influenza A virus (A/New York/757/1993(H3N2)) ... 50.1 8e-07
gb|CY013367.1| Influenza A virus (A/New York/745/1994(H3N2)) ... 50.1 8e-07
gb|CY013359.1| Influenza A virus (A/New York/744/1994(H3N2)) ... 50.1 8e-07
gb|CY013351.1| Influenza A virus (A/New York/743/1994(H3N2)) ... 50.1 8e-07
gb|CY013343.1| Influenza A virus (A/New York/742/1994(H3N2)) ... 50.1 8e-07
gb|CY013335.1| Influenza A virus (A/New York/731/1994(H3N2)) ... 50.1 8e-07
gb|CY013208.1| Influenza A virus (A/New York/785/1993(H3N2)) ... 50.1 8e-07
gb|CY013200.1| Influenza A virus (A/New York/783/1993(H3N2)) ... 50.1 8e-07
gb|CY013192.1| Influenza A virus (A/New York/782/1993(H3N2)) ... 50.1 8e-07
gb|CY013184.1| Influenza A virus (A/New York/781/1993(H3N2)) ... 50.1 8e-07
gb|CY013176.1| Influenza A virus (A/New York/755/1993(H3N2)) ... 50.1 8e-07
gb|CY013168.1| Influenza A virus (A/New York/754/1993(H3N2)) ... 50.1 8e-07
gb|CY013024.1| Influenza A virus (A/New York/753/1994(H3N2)) ... 50.1 8e-07
gb|CY013016.1| Influenza A virus (A/New York/750/1994(H3N2)) ... 50.1 8e-07
gb|CY013008.1| Influenza A virus (A/New York/741/1994(H3N2)) ... 50.1 8e-07
gb|CY013000.1| Influenza A virus (A/New York/740/1994(H3N2)) ... 50.1 8e-07
gb|CY012992.1| Influenza A virus (A/New York/739/1994(H3N2)) ... 50.1 8e-07
gb|CY012984.1| Influenza A virus (A/New York/738/1994(H3N2)) ... 50.1 8e-07
gb|CY012976.1| Influenza A virus (A/New York/736/1994(H3N2)) ... 50.1 8e-07
gb|CY012960.1| Influenza A virus (A/New York/725/1994(H3N2)) ... 50.1 8e-07
gb|CY012952.1| Influenza A virus (A/New York/724/1994(H3N2)) ... 50.1 8e-07
gb|CY012944.1| Influenza A virus (A/New York/723/1994(H3N2)) ... 50.1 8e-07
gb|CY012936.1| Influenza A virus (A/New York/718/1994(H3N2)) ... 50.1 8e-07
gb|CY012784.1| Influenza A virus (A/New York/786/1993(H3N2)) ... 50.1 8e-07
gb|CY012776.1| Influenza A virus (A/New York/779/1993(H3N2)) ... 50.1 8e-07
gb|CY012768.1| Influenza A virus (A/New York/778/1993(H3N2)) ... 50.1 8e-07
gb|CY012760.1| Influenza A virus (A/New York/777/1993(H3N2)) ... 50.1 8e-07
gb|CY012752.1| Influenza A virus (A/New York/775/1993(H3N2)) ... 50.1 8e-07
gb|CY012744.1| Influenza A virus (A/New York/771/1993(H3N2)) ... 50.1 8e-07
gb|CY012736.1| Influenza A virus (A/New York/770/1993(H3N2)) ... 50.1 8e-07
gb|CY012728.1| Influenza A virus (A/New York/767/1993(H3N2)) ... 50.1 8e-07
gb|CY012584.1| Influenza A virus (A/New York/748/1994(H3N2)) ... 50.1 8e-07
gb|CY012576.1| Influenza A virus (A/New York/747/1994(H3N2)) ... 50.1 8e-07
gb|CY012568.1| Influenza A virus (A/New York/746/1994(H3N2)) ... 50.1 8e-07
gb|CY012560.1| Influenza A virus (A/New York/714/1994(H3N2)) ... 50.1 8e-07
gb|CY012552.1| Influenza A virus (A/New York/713/1994(H3N2)) ... 50.1 8e-07
gb|CY012544.1| Influenza A virus (A/New York/710/1994(H3N2)) ... 50.1 8e-07
gb|CY012536.1| Influenza A virus (A/New York/707/1994(H3N2)) ... 50.1 8e-07
gb|CY012528.1| Influenza A virus (A/New York/705/1994(H3N2)) ... 50.1 8e-07
gb|CY012448.1| Influenza A virus (A/New York/655/1994(H3N2)) ... 50.1 8e-07
gb|CY012288.1| Influenza A virus (A/New York/734/1994(H3N2)) ... 50.1 8e-07
gb|CY012280.1| Influenza A virus (A/New York/730/1994(H3N2)) ... 50.1 8e-07
gb|CY012272.1| Influenza A virus (A/New York/729/1994(H3N2)) ... 50.1 8e-07
gb|CY012264.1| Influenza A virus (A/New York/722/1994(H3N2)) ... 50.1 8e-07
gb|CY012224.1| Influenza A virus (A/New York/657/1994(H3N2)) ... 50.1 8e-07
gb|CY012184.1| Influenza A virus (A/New York/765/1993(H3N2)) ... 50.1 8e-07
gb|CY012176.1| Influenza A virus (A/New York/764/1993(H3N2)) ... 50.1 8e-07
gb|CY012168.1| Influenza A virus (A/New York/763/1993(H3N2)) ... 50.1 8e-07
gb|CY012160.1| Influenza A virus (A/New York/762/1993(H3N2)) ... 50.1 8e-07
gb|CY012152.1| Influenza A virus (A/New York/761/1993(H3N2)) ... 50.1 8e-07
gb|CY012144.1| Influenza A virus (A/New York/760/1993(H3N2)) ... 50.1 8e-07
gb|CY012136.1| Influenza A virus (A/New York/759/1993(H3N2)) ... 50.1 8e-07
gb|CY012128.1| Influenza A virus (A/New York/758/1993(H3N2)) ... 50.1 8e-07
gb|CY012120.1| Influenza A virus (A/New York/756/1993(H3N2)) ... 50.1 8e-07
gb|CY011944.1| Influenza A virus (A/New York/752/1993(H3N2)) ... 50.1 8e-07
gb|CY011936.1| Influenza A virus (A/New York/728/1994(H3N2)) ... 50.1 8e-07
gb|CY011928.1| Influenza A virus (A/New York/727/1994(H3N2)) ... 50.1 8e-07
gb|CY011920.1| Influenza A virus (A/New York/726/1994(H3N2)) ... 50.1 8e-07
gb|CY011912.1| Influenza A virus (A/New York/721/1994(H3N2)) ... 50.1 8e-07
gb|CY011904.1| Influenza A virus (A/New York/720/1994(H3N2)) ... 50.1 8e-07
gb|CY011896.1| Influenza A virus (A/New York/719/1994(H3N2)) ... 50.1 8e-07
gb|CY011880.1| Influenza A virus (A/New York/715/1994(H3N2)) ... 50.1 8e-07
gb|CY011872.1| Influenza A virus (A/New York/712/1993(H3N2)) ... 50.1 8e-07
gb|CY011864.1| Influenza A virus (A/New York/711/1994(H3N2)) ... 50.1 8e-07
gb|CY011856.1| Influenza A virus (A/New York/709/1994(H3N2)) ... 50.1 8e-07
gb|CY011576.1| Influenza A virus (A/New York/751/1993(H3N2)) ... 50.1 8e-07
gb|CY011488.1| Influenza A virus (A/New York/654/1994(H3N2)) ... 50.1 8e-07
gb|CY011480.1| Influenza A virus (A/Memphis/2/1990(H3N2)) seg... 50.1 8e-07
gb|CY011472.1| Influenza A virus (A/Memphis/12/1985(H3N2)) se... 50.1 8e-07
gb|CY011384.1| Influenza A virus (A/New York/732/1994(H3N2)) ... 50.1 8e-07
gb|CY011376.1| Influenza A virus (A/New York/708/1994(H3N2)) ... 50.1 8e-07
gb|CY011288.1| Influenza A virus (A/Memphis/5/1986(H3N2)) seg... 50.1 8e-07
gb|CY010988.1| Influenza A virus (A/New York/733/1994(H3N2)) ... 50.1 8e-07
gb|CY010756.1| Influenza A virus (A/Memphis/8/1988(H3N2)) seg... 50.1 8e-07
gb|DQ508849.1| Influenza A virus (A/Leningrad/360/1986(H3N2))... 50.1 8e-07
gb|DQ508833.1| Influenza A virus (A/Beijing/353/1989(H3N2)) h... 50.1 8e-07
gb|DQ508825.1| Influenza A virus (A/Bangkok/01/1979(H3N2)) he... 50.1 8e-07
gb|CY003752.2| Influenza A virus (A/Nanchang/0074/94(H3N2)) s... 50.1 8e-07
gb|CY006203.1| Influenza A virus (A/Nanjing/13/80(H3N2)) segm... 50.1 8e-07
gb|CY006043.1| Influenza A virus (A/Hong Kong/45/80(H3N2)) se... 50.1 8e-07
gb|CY003736.1| Influenza A virus (A/Hong Kong/5/83(H3N2)) seg... 50.1 8e-07
gb|CY003544.1| Influenza A virus (A/Hong Kong/7/87(H3N2)) seg... 50.1 8e-07
gb|CY003520.1| Influenza A virus (A/Hong Kong/24/85(H3N2)) se... 50.1 8e-07
gb|CY003512.1| Influenza A virus (A/Hong Kong/2/88(H3N2)) seg... 50.1 8e-07
gb|CY003488.1| Influenza A virus (A/Hong Kong/46/80(H3N2)) se... 50.1 8e-07
gb|CY003064.1| Influenza A virus (A/Memphis/1/90(H3N2)) segme... 50.1 8e-07
gb|CY002752.1| Influenza A virus (A/Memphis/1/86(H3N2)) segme... 50.1 8e-07
gb|AY589660.1| Influenza A virus (A/Kyongbuk/320/2002(H3N2)) ... 50.1 8e-07
gb|AY589657.1| Influenza A virus (A/Incheon/260/2002(H3N2)) h... 50.1 8e-07
gb|AY589655.1| Influenza A virus (A/Daejeon/258/2002(H3N2)) h... 50.1 8e-07
gb|AY377546.1| Influenza A virus (A/Finland/250/93(H3N2)) hem... 50.1 8e-07
gb|AY377545.1| Influenza A virus (A/Finland/269/93(H3N2)) hem... 50.1 8e-07
gb|AY377544.1| Influenza A virus (A/Finland/270/93(H3N2)) hem... 50.1 8e-07
gb|AY377543.1| Influenza A virus (A/Finland/273/93(H3N2)) hem... 50.1 8e-07
gb|AY377542.1| Influenza A virus (A/Finland/331/93(H3N2)) hem... 50.1 8e-07
gb|AY377541.1| Influenza A virus (A/Finland/321/93(H3N2)) hem... 50.1 8e-07
gb|AY377540.1| Influenza A virus (A/Finland/205/92(H3N2)) hem... 50.1 8e-07
gb|AY377539.1| Influenza A virus (A/Finland/245/92(H3N2)) hem... 50.1 8e-07
gb|AY377538.1| Influenza A virus (A/Finland/190/92(H3N2)) hem... 50.1 8e-07
gb|AY377537.1| Influenza A virus (A/Finland/191/92(H3N2)) hem... 50.1 8e-07
gb|AF442483.1| Influenza A virus (A/Finland/280/93(H3N2)) hem... 50.1 8e-07
gb|AY462237.1| Influenza A virus (A/Finland/256/93(H3N2)) hem... 50.1 8e-07
gb|U49722.1|IAU49722 Influenza A virus (A/Florence/1/93(H3N2)... 50.1 8e-07
gb|U77830.1|IAU77830 Influenza A virus (A/Christ Hospital/231... 50.1 8e-07
gb|CY009068.1| Influenza A virus (A/Memphis/2/85(H3N2)) segme... 50.1 8e-07
gb|CY009052.1| Influenza A virus (A/Memphis/33/83(H3N2)) segm... 50.1 8e-07
gb|CY009012.1| Influenza A virus (A/Nanchang/12/93(H3N2)) seg... 50.1 8e-07
gb|CY002088.1| Influenza A virus (A/Memphis/66/86(H3N2)) segm... 50.1 8e-07
gb|CY003720.1| Influenza A virus (A/Hong Kong/26/83(H3N2)) se... 50.1 8e-07
gb|AY661211.1| Influenza A virus (A/Singapore/3/93(H3N2)) hem... 50.1 8e-07
gb|AY661204.1| Influenza A virus (A/Hongkong/55/94(H3N2)) hem... 50.1 8e-07
gb|AY661180.1| Influenza A virus (A/Johannesburg/33/94(H3N2))... 50.1 8e-07
gb|AY661179.1| Influenza A virus (A/Johannesburg/47/94(H3N2))... 50.1 8e-07
gb|AY661178.1| Influenza A virus (A/Hongkong/56/94(H3N2)) hem... 50.1 8e-07
gb|AY661175.1| Influenza A virus (A/Hongkong/1/94(H3N2)) hema... 50.1 8e-07
gb|AY661173.1| Influenza A virus (A/Oslo/2219/93(H3N2)) hemag... 50.1 8e-07
gb|AY661172.1| Influenza A virus (A/Lyon/23602/93(H3N2)) hema... 50.1 8e-07
gb|AY661171.1| Influenza A virus (A/Lyon/22686/93(H3N2)) hema... 50.1 8e-07
gb|AY661170.1| Influenza A virus (A/Lyon/1815/93(H3N2)) hemag... 50.1 8e-07
gb|AY661168.1| Influenza A virus (A/Lyon/672/93(H3N2)) hemagg... 50.1 8e-07
gb|AY661167.1| Influenza A virus (A/Netherlands/399/93(H3N2))... 50.1 8e-07
gb|AY661166.1| Influenza A virus (A/Netherlands/398/93 (H3N2)... 50.1 8e-07
gb|AY661165.1| Influenza A virus (A/Netherlands/440/93(H3N2))... 50.1 8e-07
gb|AY661163.1| Influenza A virus (A/Netherlands/372/93(H3N2))... 50.1 8e-07
gb|AY661162.1| Influenza A virus (A/Netherlands/357/93(H3N2))... 50.1 8e-07
gb|AY661161.1| Influenza A virus (A/Stockholm/20/93(H3N2)) he... 50.1 8e-07
gb|AY661160.1| Influenza A virus (A/Netherlands/241/93(H3N2))... 50.1 8e-07
gb|AY661159.1| Influenza A virus (A/Shangdong/9/93(H3N2)) hem... 50.1 8e-07
gb|AY661157.1| Influenza A virus (A/Victoria/104/93(H3N2)) he... 50.1 8e-07
gb|AY661156.1| Influenza A virus (A/Shiga/6/93(H3N2)) hemaggl... 50.1 8e-07
gb|AY661155.1| Influenza A virus (A/Akita/4/93(H3N2)) hemaggl... 50.1 8e-07
gb|AY661154.1| Influenza A virus (A/Yamagata/62/93(H3N2)) hem... 50.1 8e-07
gb|AY661153.1| Influenza A virus (A/Yamagata/61/93(H3N2)) hem... 50.1 8e-07
gb|AY661152.1| Influenza A virus (A/Yamagata/56/93(H3N2)) hem... 50.1 8e-07
gb|AY661151.1| Influenza A virus (A/Madrid/G252/93(H3N2)) hem... 50.1 8e-07
gb|AY661150.1| Influenza A virus (A/Enschede/5458/93(H3N2)) h... 50.1 8e-07
gb|AY661149.1| Influenza A virus (A/Netherlands/179/93(H3N2))... 50.1 8e-07
gb|AY661148.1| Influenza A virus (A/Madrid/G130/93(H3N2)) hem... 50.1 8e-07
gb|AY661147.1| Influenza A virus (A/Madrid/G122/93(H3N2)) hem... 50.1 8e-07
gb|AY661146.1| Influenza A virus (A/Netherlands/165/93 (H3N2)... 50.1 8e-07
gb|AY661145.1| Influenza A virus (A/Madrid/G109/93(H3N2)) hem... 50.1 8e-07
gb|AY661144.1| Influenza A virus (A/Madrid/G102/93(H3N2)) hem... 50.1 8e-07
gb|AY661143.1| Influenza A virus (A/Madrid/G101/93(H3N2)) hem... 50.1 8e-07
gb|AY661142.1| Influenza A virus (A/Madrid/G116/93(H3N2)) hem... 50.1 8e-07
gb|AY661141.1| Influenza A virus (A/Netherlands/126/93 (H3N2)... 50.1 8e-07
gb|AY661140.1| Influenza A virus (A/Netherlands/115/93 (H3N2)... 50.1 8e-07
gb|AY661139.1| Influenza A virus (A/Netherlands/101/93 (H3N2)... 50.1 8e-07
gb|AY661138.1| Influenza A virus (A/Finland/247/92(H3N2)) hem... 50.1 8e-07
gb|AY661137.1| Influenza A virus (A/Stockholm/13/92(H3N2)) he... 50.1 8e-07
gb|AY661136.1| Influenza A virus (A/Stockholm/12/92(H3N2)) he... 50.1 8e-07
gb|AY661135.1| Influenza A virus (A/Umea/2000/92(H3N2)) hemag... 50.1 8e-07
gb|AY661134.1| Influenza A virus (A/Umea/1982/92(H3N2)) hemag... 50.1 8e-07
gb|AY661133.1| Influenza A virus (A/Netherlands/17/93(H3N2)) ... 50.1 8e-07
gb|AY661132.1| Influenza A virus (A/Paris/287/93(H3N2)) hemag... 50.1 8e-07
gb|AY661131.1| Influenza A virus (A/Netherlands/3/93(H3N2)) h... 50.1 8e-07
gb|AY661130.1| Influenza A virus (A/Beijing/32/92(H3N2)) hema... 50.1 8e-07
gb|AY661129.1| Influenza A virus (A/Sendai/C273/92(H3N2)) hem... 50.1 8e-07
gb|AY661128.1| Influenza A virus (A/South_Australia/27/92(H3N... 50.1 8e-07
gb|AY661127.1| Influenza A virus (A/South_Australia/23/92(H3N... 50.1 8e-07
gb|AY661126.1| Influenza A virus (A/South_Australia/8/92(H3N2... 50.1 8e-07
gb|AY661125.1| Influenza A virus (A/Netherlands/938/92(H3N2))... 50.1 8e-07
gb|AY661124.1| Influenza A virus (A/Houston/56798/92(H3N2)) h... 50.1 8e-07
gb|AY661123.1| Influenza A virus (A/Houston/56941/92(H3N2)) h... 50.1 8e-07
gb|AY661122.1| Influenza A virus (A/Houston/56829/92(H3N2)) h... 50.1 8e-07
gb|AY661121.1| Influenza A virus (A/Stockholm/8/92(H3N2)) hem... 50.1 8e-07
gb|AY661120.1| Influenza A virus (A/Stockholm/7/92(H3N2)) hem... 50.1 8e-07
gb|AY661119.1| Influenza A virus (A/Stockholm/20/91(H3N2)) he... 50.1 8e-07
gb|AY661118.1| Influenza A virus (A/Madrid/OV31/92(H3N2)) hem... 50.1 8e-07
gb|AY661117.1| Influenza A virus (A/Madrid/G58/92(H3N2)) hema... 50.1 8e-07
gb|AY661116.1| Influenza A virus (A/Tilburg/5957/92(H3N2)) he... 50.1 8e-07
gb|AY661115.1| Influenza A virus (A/Amsterdam/4112/92(H3N2)) ... 50.1 8e-07
gb|AY661114.1| Influenza A virus (A/Nijmegen/3129/92(H3N2)) h... 50.1 8e-07
gb|AY661113.1| Influenza A virus (A/Nijmegen/3126/92(H3N2)) h... 50.1 8e-07
gb|AY661112.1| Influenza A virus (A/Rotterdam/100540/92(H3N2)... 50.1 8e-07
gb|AY661111.1| Influenza A virus (A/Geneva/5113/92(H3N2)) hem... 50.1 8e-07
gb|AY661110.1| Influenza A virus (A/Finland/220/92(H3N2)) hem... 50.1 8e-07
gb|AY661109.1| Influenza A virus (A/Finland/218/92(H3N2)) hem... 50.1 8e-07
gb|AY661108.1| Influenza A virus (A/Netherlands/823/92 (H3N2)... 50.1 8e-07
gb|AY661107.1| Influenza A virus (A/Lyon/chu24222/91(H3N2)) h... 50.1 8e-07
gb|AY661106.1| Influenza A virus (A/Lyon/chu24103/91(H3N2)) h... 50.1 8e-07
gb|AY661105.1| Influenza A virus (A/Lyon/chu23672/91(H3N2)) h... 50.1 8e-07
gb|AY661104.1| Influenza A virus (A/Lyon/ons1337/91(H3N2)) he... 50.1 8e-07
gb|AY661103.1| Influenza A virus (A/Lyon/ons1276/91(H3N2)) he... 50.1 8e-07
gb|AY661102.1| Influenza A virus (A/Lyon/ons1373/91(H3N2)) he... 50.1 8e-07
gb|AY661101.1| Influenza A virus (A/Lyon/ons1594/91(H3N2)) he... 50.1 8e-07
gb|AY661100.1| Influenza A virus (A/Lyon/ons1189/91(H3N2)) he... 50.1 8e-07
gb|AY661099.1| Influenza A virus (A/Lyon/1182/91(H3N2)) hemag... 50.1 8e-07
gb|AY661098.1| Influenza A virus (A/Lyon/1149/91(H3N2)) hemag... 50.1 8e-07
gb|AY661097.1| Influenza A virus (A/Netherlands/935/92(H3N2))... 50.1 8e-07
gb|AY661096.1| Influenza A virus (A/Enschede/1285/92(H3N2)) h... 50.1 8e-07
gb|AY661095.1| Influenza A virus (A/Paris/614/92(H3N2)) hemag... 50.1 8e-07
gb|AY661094.1| Influenza A virus (A/Paris/597/92(H3N2)) hemag... 50.1 8e-07
gb|AY661093.1| Influenza A virus (A/Paris/583/92(H3N2)) hemag... 50.1 8e-07
gb|AY661092.1| Influenza A virus (A/Paris/564/92(H3N2)) hemag... 50.1 8e-07
gb|AY661091.1| Influenza A virus (A/Paris/548/92(H3N2)) hemag... 50.1 8e-07
gb|AY661090.1| Influenza A virus (A/Paris/512/92(H3N2)) hemag... 50.1 8e-07
gb|AY661089.1| Influenza A virus (A/Paris/490/92(H3N2)) hemag... 50.1 8e-07
gb|AY661088.1| Influenza A virus (A/Paris/467/92(H3N2)) hemag... 50.1 8e-07
gb|AY661087.1| Influenza A virus (A/Paris/457/92(H3N2)) hemag... 50.1 8e-07
gb|AY661086.1| Influenza A virus (A/Paris/424/92(H3N2)) hemag... 50.1 8e-07
gb|AY661085.1| Influenza A virus (A/Paris/417/92(H3N2)) hemag... 50.1 8e-07
gb|AY661084.1| Influenza A virus (A/Paris/407/92(H3N2)) hemag... 50.1 8e-07
gb|AY661083.1| Influenza A virus (A/Paris/325/92(H3N2)) hemag... 50.1 8e-07
gb|AY661082.1| Influenza A virus (A/Paris/320/92(H3N2)) hemag... 50.1 8e-07
gb|AY661081.1| Influenza A virus (A/England/261/91(H3N2)) hem... 50.1 8e-07
gb|AY661080.1| Influenza A virus (A/Netherlands/819/92(H3N2))... 50.1 8e-07
gb|AY661079.1| Influenza A virus (A/Madrid/G12/91(H3N2)) hema... 50.1 8e-07
gb|AY661078.1| Influenza A virus (A/Netherlands/816/91(H3N2))... 50.1 8e-07
gb|AY661077.1| Influenza A virus (A/Geneva/6447/91(H3N2)) hem... 50.1 8e-07
gb|AY661076.1| Influenza A virus (A/Canberra/1/91(H3N2)) hema... 50.1 8e-07
gb|AY661075.1| Influenza A virus (A/England/260/91(H3N2)) hem... 50.1 8e-07
gb|AY661074.1| Influenza A virus (A/Shanghai/24/90(H3N2)) hem... 50.1 8e-07
gb|AY661073.1| Influenza A virus (A/Victoria/2/90(H3N2)) hema... 50.1 8e-07
gb|AY661072.1| Influenza A virus (A/Seoul/1/90(H3N2)) hemaggl... 50.1 8e-07
gb|AY661071.1| Influenza A virus (A/Atlanta/211/89(H3N2)) hem... 50.1 8e-07
gb|AY661070.1| Influenza A virus (A/Memphis/5/90(H3N2)) hemag... 50.1 8e-07
gb|AY661069.1| Influenza A virus (A/Memphis/2/90(H3N2)) hemag... 50.1 8e-07
gb|AY661068.1| Influenza A virus (A/Netherlands/650/89 (H3N2)... 50.1 8e-07
gb|AY661067.1| Influenza A virus (A/Netherlands/620/89 (H3N2)... 50.1 8e-07
gb|AY661066.1| Influenza A virus (A/Beijing/353/89(H3N2)) hem... 50.1 8e-07
gb|AY661065.1| Influenza A virus (A/Victoria/1/89(H3N2)) hema... 50.1 8e-07
gb|AY661064.1| Influenza A virus (A/Singapore/53/89(H3N2)) he... 50.1 8e-07
gb|AY661063.1| Influenza A virus (A/Singapore/40/89(H3N2)) he... 50.1 8e-07
gb|AY661062.1| Influenza A virus (A/Singapore/36/89(H3N2)) he... 50.1 8e-07
gb|AY661061.1| Influenza A virus (A/Singapore/35/89(H3N2)) he... 50.1 8e-07
gb|AY661060.1| Influenza A virus (A/Singapore/34/89(H3N2)) he... 50.1 8e-07
gb|AY661059.1| Influenza A virus (A/Hongkong/1/89(H3N2)) hema... 50.1 8e-07
gb|AY661058.1| Influenza A virus (A/Wellington/5/89(H3N2)) he... 50.1 8e-07
gb|AY661057.1| Influenza A virus (A/Geneva/5007/89(H3N2)) hem... 50.1 8e-07
gb|AY661056.1| Influenza A virus (A/Stockholm/12/88(H3N2)) he... 50.1 8e-07
gb|AY661055.1| Influenza A virus (A/England/427/88(H3N2)) hem... 50.1 8e-07
gb|AY661054.1| Influenza A virus (A/Netherlands/450/88(H3N2))... 50.1 8e-07
gb|AY661053.1| Influenza A virus (A/Colorado/2/86(H3N2)) hema... 50.1 8e-07
gb|AY661052.1| Influenza A virus (A/Stockholm/10/85(H3N2)) he... 50.1 8e-07
gb|AY661051.1| Influenza A virus (A/Guildford/V728/85(H3N2)) ... 50.1 8e-07
gb|AY661050.1| Influenza A virus (A/Wellington/4/85(H3N2)) he... 50.1 8e-07
gb|AY661049.1| Influenza A virus (A/Netherlands/330/85(H3N2))... 50.1 8e-07
gb|AY661046.1| Influenza A virus (A/Rotterdam/577/80(H3N2)) h... 50.1 8e-07
gb|AY661029.1| Influenza A virus (A/Netherlands/738/89(H3N2))... 50.1 8e-07
gb|AY661025.1| Influenza A virus (A/Netherlands/233/82(H3N2))... 50.1 8e-07
gb|AY661020.1| Influenza A virus (A/Netherlands/18/94(H3N2)) ... 50.1 8e-07
gb|AY661016.1| Influenza A virus (A/Oslo/13676/83(H3N2)) hema... 50.1 8e-07
gb|AY661015.1| Influenza A virus (A/Bilthoven/10684/82(H3N2))... 50.1 8e-07
gb|AY661014.1| Influenza A virus (A/Bilthoven/4791/81(H3N2)) ... 50.1 8e-07
gb|CY008668.1| Influenza A virus (A/Memphis/25/85(H3N2)) segm... 50.1 8e-07
gb|CY006331.2| Influenza A virus (A/Nanchang/A2/94(H3N2)) seg... 50.1 8e-07
gb|CY008660.1| Influenza A virus (A/Memphis/1/80(H3N2)) segme... 50.1 8e-07
gb|CY008716.1| Influenza A virus (A/Memphis/11/86(H3N2)) segm... 50.1 8e-07
gb|CY008724.1| Influenza A virus (A/Memphis/5/88(H3N2)) segme... 50.1 8e-07
gb|CY008732.1| Influenza A virus (A/Memphis/15/88(H3N2)) segm... 50.1 8e-07
gb|CY008740.1| Influenza A virus (A/Memphis/7/90(H3N2)) segme... 50.1 8e-07
gb|AF405212.1| Influenza A virus (A/Oregon/4/80(H3N2)) hemagg... 50.1 8e-07
gb|AF405210.1| Influenza A virus (A/Baylor4A/83(H3N2)) hemagg... 50.1 8e-07
gb|AF405207.1| Influenza A virus (A/Baylor1B/83(H3N2)) hemagg... 50.1 8e-07
dbj|D10162.1|FLAG89HA Influenza A virus (A/Guizhou/54/89(H3N2... 50.1 8e-07
dbj|D10161.1|FLAS87HA Influenza A virus (A/Sichuan/02/87(H3N2... 50.1 8e-07
gb|AY262745.1| Influenza A virus (A/Finland/300/93(H3N2)) hae... 50.1 8e-07
gb|AY262744.1| Influenza A virus (A/Finland/246/92(H3N2)) hae... 50.1 8e-07
emb|Z46416.1| Influenza A virus (A/Scotland/173/1993(H3N2)) m... 50.1 8e-07
emb|Z46414.1| Influenza A virus (A/Scotland/160/1993(H3N2)) m... 50.1 8e-07
emb|Z46411.1| Influenza A virus (A/Madrid/252/1993(H3N2)) mRN... 50.1 8e-07
emb|Z46401.1| Influenza A virus (A/England/347/1993(H3N2)) mR... 50.1 8e-07
emb|Z46400.1| Influenza A virus (A/England/346/1993(H3N2)) mR... 50.1 8e-07
emb|Z46399.1| Influenza A virus (A/England/328/1993(H3N2)) mR... 50.1 8e-07
emb|Z46398.1| Influenza A virus (A/England/289/1993(H3N2)) mR... 50.1 8e-07
emb|Z46397.1| Influenza A virus (A/England/286/1993(H3N2)) mR... 50.1 8e-07
emb|Z46396.1| Influenza A virus (A/England/284/1993(H3N2)) mR... 50.1 8e-07
emb|Z46395.1| Influenza A virus (A/England/269/93(H3N2)) mRNA... 50.1 8e-07
emb|Z46394.1| Influenza A virus (A/England/247/1993(H3N2)) mR... 50.1 8e-07
emb|Z46391.1| Influenza A virus (A/Beijing/353/1989(H3N2)) mR... 50.1 8e-07
emb|Z46417.1| Influenza A virus (A/Shangdong/9/1993(H3N2)) mR... 50.1 8e-07
emb|Z46410.1| Influenza A virus (A/Hong Kong/23/1992(H3N2)) m... 50.1 8e-07
emb|Z46409.1| Influenza A virus (A/Hong Kong/34/1990(H3N2)) m... 50.1 8e-07
emb|Z46406.1| Influenza A virus (A/Guangdong/25/1993(H3N2)) m... 50.1 8e-07
emb|Z46404.1| Influenza A virus (A/England/68/1994(H3N2)) mRN... 50.1 8e-07
emb|Z46403.1| Influenza A virus (A/England/67/1994(H3N2)) mRN... 50.1 8e-07
emb|Z46392.1| Influenza A virus (A/Beijing/32/1992(H3N2)) mRN... 50.1 8e-07
emb|Z46412.1| Influenza A virus (A/Scotland/2/1993(H3N2)) mRN... 50.1 8e-07
emb|Z46407.1| Influenza A virus (A/Hong Kong/1/1994(H3N2)) mR... 50.1 8e-07
emb|Z46405.1| Influenza A virus (A/England/7/1994(H3N2)) mRNA... 50.1 8e-07
emb|Z46393.1| Influenza A virus (A/England/1/1993(H3N2)) mRNA... 50.1 8e-07
emb|X75800.1| Influenza A virus (Beijing/352/1989,(highgrowth... 50.1 8e-07
gb|CY008468.1| Influenza A virus (A/Memphis/3/80(H3N2)) segme... 50.1 8e-07
gb|AF008892.1|AF008892 Influenza A virus (A/Baylor6B/Texas/25... 50.1 8e-07
gb|AF008894.1|AF008894 Influenza A virus (A/Baylor5A/Texas/12... 50.1 8e-07
gb|AF008891.1|AF008891 Influenza A virus (A/Baylor3B/Texas/24... 50.1 8e-07
gb|AF008866.1|AF008866 Influenza A virus (A/Baylor2B/Texas/25... 50.1 8e-07
gb|AF386617.1|AF386617 Influenza A virus (A/Kangwon/93/99(H3N... 50.1 8e-07
gb|AF386616.1|AF386616 Influenza A virus (A/Kangwon/88/99(H3N... 50.1 8e-07
gb|AF386613.1|AF386613 Influenza A virus (A/Daegu/103/98(H3N2... 50.1 8e-07
gb|AF386612.1|AF386612 Influenza A virus (A/Pusan/10/98(H3N2)... 50.1 8e-07
gb|AF386611.1|AF386611 Influenza A virus (A/Seoul/47/91(H3N2)... 50.1 8e-07
gb|AF386610.1|AF386610 Influenza A virus (A/Seoul/46/91(H3N2)... 50.1 8e-07
gb|AF386609.1|AF386609 Influenza A virus (A/Seoul/44/91(H3N2)... 50.1 8e-07
gb|AF386608.1|AF386608 Influenza A virus (A/Seoul/23/91(H3N2)... 50.1 8e-07
gb|AF386607.1|AF386607 Influenza A virus (A/Seoul/22/90(H3N2)... 50.1 8e-07
gb|AF386606.1|AF386606 Influenza A virus (A/Seoul/50/91(H3N2)... 50.1 8e-07
gb|AF386605.1|AF386605 Influenza A virus (A/Seoul/16/89(H3N2)... 50.1 8e-07
gb|AF386604.1|AF386604 Influenza A virus (A/Seoul/11/88(H3N2)... 50.1 8e-07
gb|AY377933.1| Influenza A virus (A/swine/Changhua/72-10 clon... 50.1 8e-07
emb|AJ252131.1|IVI252131 Influenza A virus ha gene for heamag... 50.1 8e-07
emb|AJ252129.1|IVI252129 Influenza A virus (A/Berlin/6/88(H3N... 50.1 8e-07
gb|AF233691.1|AF233691 Influenza A virus (A/Philippines/2/82(... 50.1 8e-07
gb|AF201846.1|AF201846 Influenza A virus (A/Praha/2/83(HI min... 50.1 8e-07
gb|AF201845.1|AF201845 Influenza A virus (A/Praha/2/83(HI plu... 50.1 8e-07
gb|AF201844.1|AF201844 Influenza A virus (A/Belgium/2/81) hem... 50.1 8e-07
gb|AF201843.1|AF201843 Influenza A virus (A/BANGKOK/1/79) hem... 50.1 8e-07
gb|DQ336015.1| Influenza A virus (A/Brazil/006/00(H3N2)) hema... 50.1 8e-07
gb|DQ336014.1| Influenza A virus (A/Brazil/009/00(H3N2)) hema... 50.1 8e-07
gb|DQ336013.1| Influenza A virus (A/Brazil/010/00(H3N2)) hema... 50.1 8e-07
gb|DQ336012.1| Influenza A virus (A/Brazil/015/00(H3N2)) hema... 50.1 8e-07
gb|DQ336011.1| Influenza A virus (A/Brazil/008/00(H3N2)) hema... 50.1 8e-07
gb|CY007835.1| Influenza A virus (A/Nanchang/A1/94(H3N2)) seg... 50.1 8e-07
gb|AF092063.1|AF092063 Influenza A virus (A/Wellington/4/85) ... 50.1 8e-07
gb|AF180666.1| Influenza A virus (A/Virginia/1/91(H3N2)) hema... 50.1 8e-07
gb|AF180570.1| Influenza A virus (A/Hong Kong/434/96(H3N2)) h... 50.1 8e-07
gb|AF180567.1| Influenza A virus (A/Louisiana/1/93(H3N2)) hem... 50.1 8e-07
gb|AF180566.1| Influenza A virus (A/Yokohama/73/92(H3N2)) hem... 50.1 8e-07
gb|AF180565.1| Influenza A virus (A/Hebei/12/93(H3N2)) hemagg... 50.1 8e-07
gb|AF180564.1| Influenza A virus (A/Tianjing/33/92(H3N2)) hem... 50.1 8e-07
gb|AF204238.1|AF204238 Influenza A virus (A/England/427/88(H3... 50.1 8e-07
dbj|D21173.1|FLAHAH2 Influenza A virus (A/Sichuan/2/87(H3N2))... 50.1 8e-07
dbj|D30665.1|FLASPH14 Influenza A virus (A/Yokohama/73/92(H3N... 50.1 8e-07
dbj|D30663.1|FLASPH2 Influenza A virus (A/Washington/15/91(H3... 50.1 8e-07
dbj|D30662.1|FLASPH1 Influenza A virus (A/Brazil/02/91(H3N2))... 50.1 8e-07
dbj|D30664.1|FLAH13 Influenza A virus (A/Tianjin/33/92(H3N2))... 50.1 8e-07
dbj|D30668.1|FLAH5 Influenza A virus (A/Hebei/12/93(H3N2)) ge... 50.1 8e-07
gb|AF008908.1|AF008908 Influenza A virus (A/Cheng-mei/4/85(H3... 50.1 8e-07
gb|AF008906.1|AF008906 Influenza A virus (A/Tonga/23/85(H3N2)... 50.1 8e-07
gb|AF008905.1|AF008905 Influenza A virus (A/Christ_Church/2/8... 50.1 8e-07
gb|AF008904.1|AF008904 Influenza A virus (A/Yokohama/C5/85(H3... 50.1 8e-07
gb|AF008903.1|AF008903 Influenza A virus (A/Leningrad/360/86(... 50.1 8e-07
gb|AF008902.1|AF008902 Influenza A virus (A/Yamagata/96/85(H3... 50.1 8e-07
gb|AF008901.1|AF008901 Influenza A virus (A/Bangkok/25/(H3N2)... 50.1 8e-07
gb|AF008900.1|AF008900 Influenza A virus (A/Gumma/346/(H3N2))... 50.1 8e-07
gb|AF008899.1|AF008899 Influenza A virus (A/Bangkok/(H3N2)) h... 50.1 8e-07
gb|AF008898.1|AF008898 Influenza A virus (A/Stockholm/8/(H3N2... 50.1 8e-07
gb|AF008897.1|AF008897 Influenza A virus (A/Czechoslovakia/4/... 50.1 8e-07
gb|AF008896.1|AF008896 Influenza A virus (A/Christ_Church/4/(... 50.1 8e-07
gb|AF008895.1|AF008895 Influenza A virus (A/Christ_Church/1/(... 50.1 8e-07
gb|AF008893.1|AF008893 Influenza A virus (A/Mississippi/1/(H3... 50.1 8e-07
gb|AF008889.1|AF008889 Influenza A virus (A/Guizhou/1/(H3N2))... 50.1 8e-07
gb|AF008888.1|AF008888 Influenza A virus (A/Victoria/7/(H3N2)... 50.1 8e-07
gb|AF008887.1|AF008887 Influenza A virus (A/Qingdao/10/(H3N2)... 50.1 8e-07
gb|AF008886.1|AF008886 Influenza A virus (A/Shanghai/11/(H3N2... 50.1 8e-07
gb|AF008885.1|AF008885 Influenza A virus (A/Los_Angeles/(H3N2... 50.1 8e-07
gb|AF008884.1|AF008884 Influenza A virus (A/Sichuan/2/(H3N2))... 50.1 8e-07
gb|AF008883.1|AF008883 Influenza A virus (A/Guangdong/9/(H3N2... 50.1 8e-07
gb|AF008882.1|AF008882 Influenza A virus (A/Sydney/1/(H3N2)) ... 50.1 8e-07
gb|AF008881.1|AF008881 Influenza A virus (A/Kobe/768/88(H3N2)... 50.1 8e-07
gb|AF008880.1|AF008880 Influenza A virus (A/Chiba/38/88(H3N2)... 50.1 8e-07
gb|AF008879.1|AF008879 Influenza A virus (A/Tokyo/1276/(H3N2)... 50.1 8e-07
gb|AF008878.1|AF008878 Influenza A virus (A/Tokyo/1275/(H3N2)... 50.1 8e-07
gb|AF008877.1|AF008877 Influenza A virus (A/Yamaneshi/497/(H3... 50.1 8e-07
gb|AF008876.1|AF008876 Influenza A virus (A/Fukuoka/C29/(H3N2... 50.1 8e-07
gb|AF008875.1|AF008875 Influenza A virus (A/Connecticut/4/(H3... 50.1 8e-07
gb|AF008871.1|AF008871 Influenza A virus (A/Texas/17988/84(H3... 50.1 8e-07
gb|AF008870.1|AF008870 Influenza A virus (A/Texas/18733/84(H3... 50.1 8e-07
gb|AF008869.1|AF008869 Influenza A virus (A/Texas/18088/84(H3... 50.1 8e-07
gb|AF008868.1|AF008868 Influenza A virus (A/Oita/3/83(H3N2)) ... 50.1 8e-07
gb|AF008867.1|AF008867 Influenza A virus (A/Caen/1/84(H3N2)) ... 50.1 8e-07
gb|AF008865.1|AF008865 Influenza A virus (A/Stockholm/4/(H3N2... 50.1 8e-07
gb|AF008864.1|AF008864 Influenza A virus (A/USSR/26/(H3N2)) h... 50.1 8e-07
gb|AF008863.1|AF008863 Influenza A virus (A/Alaska/84(H3N2)) ... 50.1 8e-07
gb|AF008862.1|AF008862 Influenza A virus (A/Guizhou/3/(H3N2))... 50.1 8e-07
gb|AF008860.1|AF008860 Influenza A virus (A/New_York/15/94(H3... 50.1 8e-07
gb|AF008859.1|AF008859 Influenza A virus (A/Santiago/7198/94(... 50.1 8e-07
gb|AF008857.1|AF008857 Influenza A virus (A/Pennsylvania/9/93... 50.1 8e-07
gb|AF008856.1|AF008856 Influenza A virus (A/Harbin/3/94(H3N2)... 50.1 8e-07
gb|AF008854.1|AF008854 Influenza A virus (A/Waikato/20/93(H3N... 50.1 8e-07
gb|AF008852.1|AF008852 Influenza A virus (A/Washington/41/93(... 50.1 8e-07
gb|AF008851.1|AF008851 Influenza A virus (A/Wyoming/1/93(H3N2... 50.1 8e-07
gb|AF008850.1|AF008850 Influenza A virus (A/Washington/26/93(... 50.1 8e-07
gb|AF008849.1|AF008849 Influenza A virus (A/North_Carolina/93... 50.1 8e-07
gb|AF008848.1|AF008848 Influenza A virus (A/Guangdong/27/94(H... 50.1 8e-07
gb|AF008847.1|AF008847 Influenza A virus (A/New_York/38/93(H3... 50.1 8e-07
gb|AF008846.1|AF008846 Influenza A virus (A/Texas/57/93(H3N2)... 50.1 8e-07
gb|AF008845.1|AF008845 Influenza A virus (A/New_York/3/93(H3N... 50.1 8e-07
gb|AF008844.1|AF008844 Influenza A virus (A/Stockholm/1/93(H3... 50.1 8e-07
gb|AF008843.1|AF008843 Influenza A virus (A/Spain/190/93(H3N2... 50.1 8e-07
gb|AF008842.1|AF008842 Influenza A virus (A/Spain/125/93(H3N2... 50.1 8e-07
gb|AF008841.1|AF008841 Influenza A virus (A/Georgia/3/93(H3N2... 50.1 8e-07
gb|AF008839.1|AF008839 Influenza A virus (A/New_York/26/93(H3... 50.1 8e-07
gb|AF008838.1|AF008838 Influenza A virus (A/Alaska/18/93(H3N2... 50.1 8e-07
gb|AF008837.1|AF008837 Influenza A virus (A/Christ_Church/8/9... 50.1 8e-07
gb|AF008836.1|AF008836 Influenza A virus (A/Ann_Arbor/3/93(H3... 50.1 8e-07
gb|AF008834.1|AF008834 Influenza A virus (A/Netherlands/372/9... 50.1 8e-07
gb|AF008833.1|AF008833 Influenza A virus (A/California/5/93(H... 50.1 8e-07
gb|AF008832.1|AF008832 Influenza A virus (A/Vermont/3/94(H3N2... 50.1 8e-07
gb|AF008831.1|AF008831 Influenza A virus (A/Romania/182/94(H3... 50.1 8e-07
gb|AF008830.1|AF008830 Influenza A virus (A/Louisiana/6/93(H3... 50.1 8e-07
gb|AF008829.1|AF008829 Influenza A virus (A/Louisiana/4/93(H3... 50.1 8e-07
gb|AF008828.1|AF008828 Influenza A virus (A/Guangdong/25/93(H... 50.1 8e-07
gb|AF008827.1|AF008827 Influenza A virus (A/Argentina/3105/93... 50.1 8e-07
gb|AF008826.1|AF008826 Influenza A virus (A/Romania/160/94(H3... 50.1 8e-07
gb|AF008825.1|AF008825 Influenza A virus (A/Akita/1/94(H3N2))... 50.1 8e-07
gb|AF008824.1|AF008824 Influenza A virus (A/Hong_Kong/23/92(H... 50.1 8e-07
gb|AF008822.1|AF008822 Influenza A virus (A/Nanchang/3396/93(... 50.1 8e-07
gb|AF008821.1|AF008821 Influenza A virus (A/New_York/13/93(H3... 50.1 8e-07
gb|AF008820.1|AF008820 Influenza A virus (A/Shangdong/9/93(H3... 50.1 8e-07
gb|AF008819.1|AF008819 Influenza A virus (A/Sapporro/92(H3N2)... 50.1 8e-07
gb|AF008818.1|AF008818 Influenza A virus (A/Paris/688/93(H3N2... 50.1 8e-07
gb|AF008817.1|AF008817 Influenza A virus (A/California/271/92... 50.1 8e-07
gb|AF008816.1|AF008816 Influenza A virus (A/Qingdao/53/92(H3N... 50.1 8e-07
gb|AF008815.1|AF008815 Influenza A virus (A/Hawaii/3/92(H3N2)... 50.1 8e-07
gb|AF008814.1|AF008814 Influenza A virus (A/Alaska/9/92(H3N2)... 50.1 8e-07
gb|AF008813.1|AF008813 Influenza A virus (A/Beijing/46/92(H3N... 50.1 8e-07
gb|AF008812.1|AF008812 Influenza A virus (A/Beijing/32/92(H3N... 50.1 8e-07
gb|AF008811.1|AF008811 Influenza A virus (A/Victoria/1/93(H3N... 50.1 8e-07
gb|AF008810.1|AF008810 Influenza A virus (A/Indonesia/3109/91... 50.1 8e-07
gb|AF008809.1|AF008809 Influenza A virus (A/Harbin/15/92(H3N2... 50.1 8e-07
gb|AF008807.1|AF008807 Influenza A virus (A/Ningxia/10/93(H3N... 50.1 8e-07
gb|AF008806.1|AF008806 Influenza A virus (A/Sichuan/4/93(H3N2... 50.1 8e-07
gb|AF008805.1|AF008805 Influenza A virus (A/Wuzhou/4/93(H3N2)... 50.1 8e-07
gb|AF008804.1|AF008804 Influenza A virus (A/Russia/58/93(H3N2... 50.1 8e-07
gb|AF008803.1|AF008803 Influenza A virus (A/Nanchang/58/93(H3... 50.1 8e-07
gb|AF008802.1|AF008802 Influenza A virus (A/Nanchang/3332/93(... 50.1 8e-07
gb|AF008801.1|AF008801 Influenza A virus (A/Nangchang/12/93(H... 50.1 8e-07
gb|AF008799.1|AF008799 Influenza A virus (A/France/1109/94(H3... 50.1 8e-07
gb|AF008798.1|AF008798 Influenza A virus (A/New_York/64/93(H3... 50.1 8e-07
gb|AF008797.1|AF008797 Influenza A virus (A/New_York/63/93(H3... 50.1 8e-07
gb|AF008796.1|AF008796 Influenza A virus (A/New_York/42/95(H3... 50.1 8e-07
gb|AF008795.1|AF008795 Influenza A virus (A/New_York/16/94(H3... 50.1 8e-07
gb|AF008791.1|AF008791 Influenza A virus (A/New_York/17/94(H3... 50.1 8e-07
gb|AF008790.1|AF008790 Influenza A virus (A/Argentina/3779/94... 50.1 8e-07
gb|AF008788.1|AF008788 Influenza A virus (A/Pennsylvania/7/94... 50.1 8e-07
gb|AF008774.1|AF008774 Influenza A virus (A/Johannesburg/33/9... 50.1 8e-07
gb|AF008773.1|AF008773 Influenza A virus (A/Hong_Kong/55/94(H... 50.1 8e-07
gb|AF008772.1|AF008772 Influenza A virus (A/Hong_Kong/1/94(H3... 50.1 8e-07
gb|AF008766.1|AF008766 Influenza A virus (A/Guangxi/42/95(H3N... 50.1 8e-07
dbj|D49967.1|FLAH3N2I Influenza A virus (A/Shiga/2/91(H3N2)) ... 50.1 8e-07
dbj|D49966.1|FLAH3N2H Influenza A virus (A/Bangkok/144/90(H3N... 50.1 8e-07
dbj|D49965.1|FLAH3N2G Influenza A virus (A/Bangkok/139/90(H3N... 50.1 8e-07
dbj|D49964.1|FLAH3N2F Influenza A virus (A/OMS/7026/89(H3N2))... 50.1 8e-07
dbj|D49963.1|FLAH3N2E Influenza A virus (A/Guizhou/54/89(H3N2... 50.1 8e-07
dbj|D49962.1|FLAH3N2D Influenza A virus (A/Bangkok/235/89(H3N... 50.1 8e-07
dbj|D49961.1|FLAH3N2C Influenza A virus (A/Beijing/352/89(H3N... 50.1 8e-07
dbj|D49960.1|FLAH3N2B Influenza A virus (A/Hokkaido/20/89(H3N... 50.1 8e-07
dbj|D49959.1|FLAH3N2 Influenza A virus (A/Sichuan/02/87(H3N2)... 50.1 8e-07
gb|CY006891.1| Influenza A virus (A/Memphis/9/80(H3N2)) segme... 50.1 8e-07
gb|CY007627.1| Influenza A virus (A/Memphis/1/81(H3N2)) segme... 50.1 8e-07
gb|CY007619.1| Influenza A virus (A/Memphis/4/80(H3N2)) segme... 50.1 8e-07
dbj|AB043708.1| Influenza A virus (A/Aichi/2/94(H3N2)) HA gen... 50.1 8e-07
dbj|AB043707.1| Influenza A virus (A/Aichi/4/93(H3N2)) HA gen... 50.1 8e-07
dbj|AB043706.1| Influenza A virus (A/Chiba/54/92(H3N2)) HA ge... 50.1 8e-07
dbj|AB043705.1| Influenza A virus (A/Kamata/14/91(H3N2)) HA g... 50.1 8e-07
gb|U08905.1|IVU08905 Influenza virus A/Philippines/2/82/BS/ML... 50.1 8e-07
gb|L20102.1|FLAHAHI191 Influenza A virus (A/Hawaii/01/1991 MD... 50.1 8e-07
gb|CY003352.1| Influenza A virus (A/Memphis/13/88(H3N2)) segm... 50.1 8e-07
gb|U77840.1|IAU77840 Influenza A virus (A/Tottori/872AM2AL3/1... 50.1 8e-07
gb|U77839.1|IAU77839 Influenza A virus (A/Tottori/849AM2AL3/1... 50.1 8e-07
gb|U77838.1|IAU77838 Influenza A virus (A/Tottori/872AM1AL3/1... 50.1 8e-07
gb|U77837.1|IAU77837 Influenza A virus (A/Tottori/849AM1AL3/1... 50.1 8e-07

HenryN · Mar 28, 2008

Re: Homologous Recombination is Very Rare or Absent in Human Influenza A Virus

gsgs said:
..and the headline summarizes the abstract.
Even if there were strong evidence for short recombinations (<100),
there should also be some more longer ones.
This is unusual, that I can't find them in human sequences.

Here is another tandem set. Its a full list. By now you should see a pattern. Notice the swine sequences appearing (human genes evolve more slowly in swine, which is why 1990 sequences show up a decade later)

dbj|AB298687.1| Influenza A virus (A/Memphis/1/71(H3N2)) HA g... 58.0 8e-07
gb|EU430047.1| Influenza A virus (A/Shiraz/02/2006(H3N2)) hem... 58.0 8e-07
gb|EU430044.1| Influenza A virus (A/Shiraz/05/2006(H3N2)) hem... 58.0 8e-07
gb|EU430043.1| Influenza A virus (A/Shiraz/29/2006(H3N2)) hem... 58.0 8e-07
gb|EU430042.1| Influenza A virus (A/Shiraz/37/2006(H3N2)) non... 58.0 8e-07
gb|EU430041.1| Influenza A virus (A/Shiraz/54/2006(H3N2)) hem... 58.0 8e-07
gb|EU430040.1| Influenza A virus (A/Shiraz/13/2006(H3N2)) hem... 58.0 8e-07
gb|EU399751.1| Influenza A virus (A/Ontario/1252/2007(H3N2)) ... 58.0 8e-07
gb|EU301209.1| Influenza A virus (A/swine/Korea/JNS06/2004(H3... 58.0 8e-07
gb|EU311407.1| Influenza A virus (A/Tehran/27/2006(H3N2)) hem... 58.0 8e-07
gb|EU311405.1| Influenza A virus (A/Tehran/16/2006(H3N2)) hem... 58.0 8e-07
gb|EU045378.1| Influenza A virus (A/swine/Italy/39158/2007(H3... 58.0 8e-07
gb|EU045377.1| Influenza A virus (A/swine/Italy/10762/2007(H3... 58.0 8e-07
gb|EU045376.1| Influenza A virus (A/swine/Italy/114347/2006(H... 58.0 8e-07
gb|EU045375.1| Influenza A virus (A/swine/Italy/120032/2006(H... 58.0 8e-07
gb|EU045373.1| Influenza A virus (A/swine/Italy/32242/2006(H3... 58.0 8e-07
gb|EU045372.1| Influenza A virus (A/swine/Italy/30574/2005(H3... 58.0 8e-07
gb|EU045368.1| Influenza A virus (A/swine/Italy/58356/2004(H3... 58.0 8e-07
gb|EU045367.1| Influenza A virus (A/swine/Italy/253025/2003(H... 58.0 8e-07
gb|EU045360.1| Influenza A virus (A/swine/Italy/9264/1998(H3N... 58.0 8e-07
gb|CY023042.1| Influenza A virus (A/Auckland/600/2000(H3N2)) ... 58.0 8e-07
gb|EF626621.1| Influenza A virus (A/Singapore/4/1975(H3N2)) s... 58.0 8e-07
gb|EF626619.1| Influenza A virus (A/Phillipines/2/1982(H3N2))... 58.0 8e-07
gb|EF626618.1| Influenza A virus (A/Port Chalmers/1/1973(H3N2... 58.0 8e-07
gb|EF626617.1| Influenza A virus (A/Memphis/102/1972(H3N2)) s... 58.0 8e-07
gb|EF626613.1| Influenza A virus (A/England/42/1972(H3N2)) se... 58.0 8e-07
gb|EF626610.1| Influenza A virus (A/Bangkok/1/1979(H3N2)) seg... 58.0 8e-07
gb|EF551053.1| Influenza A virus (A/swine/North Carolina/2003... 58.0 8e-07
gb|EF551045.1| Influenza A virus (A/turkey/Illinois/2004(H3N2... 58.0 8e-07
gb|CY021597.1| Influenza A virus (A/Memphis/3/1971(H3N2)) seg... 58.0 8e-07
gb|DQ975262.1| Influenza A virus (A/swine/Italy/1619-2/1999(H... 58.0 8e-07
gb|DQ975254.1| Influenza A virus (A/swine/Italy/7/1981(H3N2))... 58.0 8e-07
gb|DQ975253.1| Influenza A virus (A/swine/Italy/6/1981(H3N2))... 58.0 8e-07
gb|CY020501.1| Influenza A virus (A/swine/Spain/42386/2002(H3... 58.0 8e-07
gb|EF456782.1| Influenza A virus (A/England/731/1997(H3N2)) s... 58.0 8e-07
gb|CY017299.1| Influenza A virus (A/New York/701/1995(H3N2)) ... 58.0 8e-07
gb|CY016483.1| Influenza A virus (A/New York/800/1993(H3N2)) ... 58.0 8e-07
gb|CY013789.1| Influenza A virus (A/New York/803/1993(H3N2)) ... 58.0 8e-07
gb|CY013773.1| Influenza A virus (A/New York/801/1993(H3N2)) ... 58.0 8e-07
gb|CY013765.1| Influenza A virus (A/New York/799/1993(H3N2)) ... 58.0 8e-07
gb|CY013757.1| Influenza A virus (A/New York/798/1993(H3N2)) ... 58.0 8e-07
gb|CY013749.1| Influenza A virus (A/New York/797/1993(H3N2)) ... 58.0 8e-07
gb|CY013741.1| Influenza A virus (A/New York/795/1993(H3N2)) ... 58.0 8e-07
gb|CY013725.1| Influenza A virus (A/New York/792/1993(H3N2)) ... 58.0 8e-07
gb|CY013709.1| Influenza A virus (A/New York/790/1993(H3N2)) ... 58.0 8e-07
gb|CY013677.1| Influenza A virus (A/New York/784/1993(H3N2)) ... 58.0 8e-07
gb|CY013653.1| Influenza A virus (A/New York/774/1993(H3N2)) ... 58.0 8e-07
gb|CY013629.1| Influenza A virus (A/New York/769/1993(H3N2)) ... 58.0 8e-07
gb|CY014151.1| Influenza A virus (A/New York/796/1993(H3N2)) ... 58.0 8e-07
gb|CY014143.1| Influenza A virus (A/New York/793/1993(H3N2)) ... 58.0 8e-07
gb|CY013781.1| Influenza A virus (A/New York/802/1993(H3N2)) ... 58.0 8e-07
gb|CY013733.1| Influenza A virus (A/New York/794/1993(H3N2)) ... 58.0 8e-07
gb|CY013717.1| Influenza A virus (A/New York/791/1993(H3N2)) ... 58.0 8e-07
gb|CY013701.1| Influenza A virus (A/New York/789/1993(H3N2)) ... 58.0 8e-07
gb|CY013693.1| Influenza A virus (A/New York/788/1993(H3N2)) ... 58.0 8e-07
gb|CY013685.1| Influenza A virus (A/New York/787/1993(H3N2)) ... 58.0 8e-07
gb|CY013669.1| Influenza A virus (A/New York/780/1993(H3N2)) ... 58.0 8e-07
gb|CY013661.1| Influenza A virus (A/New York/776/1993(H3N2)) ... 58.0 8e-07
gb|CY013645.1| Influenza A virus (A/New York/773/1993(H3N2)) ... 58.0 8e-07
gb|CY013637.1| Influenza A virus (A/New York/772/1993(H3N2)) ... 58.0 8e-07
gb|CY013621.1| Influenza A virus (A/New York/768/1993(H3N2)) ... 58.0 8e-07
gb|CY013613.1| Influenza A virus (A/New York/766/1993(H3N2)) ... 58.0 8e-07
gb|CY013605.1| Influenza A virus (A/New York/757/1993(H3N2)) ... 58.0 8e-07
gb|CY013319.1| Influenza A virus (A/New York/676/1995(H3N2)) ... 58.0 8e-07
gb|CY013311.1| Influenza A virus (A/New York/660/1995(H3N2)) ... 58.0 8e-07
gb|CY013208.1| Influenza A virus (A/New York/785/1993(H3N2)) ... 58.0 8e-07
gb|CY013200.1| Influenza A virus (A/New York/783/1993(H3N2)) ... 58.0 8e-07
gb|CY013192.1| Influenza A virus (A/New York/782/1993(H3N2)) ... 58.0 8e-07
gb|CY013184.1| Influenza A virus (A/New York/781/1993(H3N2)) ... 58.0 8e-07
gb|CY013176.1| Influenza A virus (A/New York/755/1993(H3N2)) ... 58.0 8e-07
gb|CY012968.1| Influenza A virus (A/New York/735/1994(H3N2)) ... 58.0 8e-07
gb|CY012928.1| Influenza A virus (A/New York/699/1995(H3N2)) ... 58.0 8e-07
gb|CY012784.1| Influenza A virus (A/New York/786/1993(H3N2)) ... 58.0 8e-07
gb|CY012776.1| Influenza A virus (A/New York/779/1993(H3N2)) ... 58.0 8e-07
gb|CY012768.1| Influenza A virus (A/New York/778/1993(H3N2)) ... 58.0 8e-07
gb|CY012760.1| Influenza A virus (A/New York/777/1993(H3N2)) ... 58.0 8e-07
gb|CY012752.1| Influenza A virus (A/New York/775/1993(H3N2)) ... 58.0 8e-07
gb|CY012744.1| Influenza A virus (A/New York/771/1993(H3N2)) ... 58.0 8e-07
gb|CY012728.1| Influenza A virus (A/New York/767/1993(H3N2)) ... 58.0 8e-07
gb|CY012520.1| Influenza A virus (A/New York/700/1995(H3N2)) ... 58.0 8e-07
gb|CY012504.1| Influenza A virus (A/New York/678/1995(H3N2)) ... 58.0 8e-07
gb|CY012496.1| Influenza A virus (A/New York/668/1995(H3N2)) ... 58.0 8e-07
gb|DQ470002.1| Influenza A virus (A/turkey/Ontario/31232/2005... 58.0 8e-07
gb|DQ469994.1| Influenza A virus (A/swine/Ontario/33853/2005(... 58.0 8e-07
gb|DQ469986.1| Influenza A virus (A/swine/Manitoba/12707/2005... 58.0 8e-07
gb|DQ469978.1| Influenza A virus (A/swine/British Columbia/28... 58.0 8e-07
gb|DQ469970.1| Influenza A virus (A/swine/Alberta/14722/2005(... 58.0 8e-07
gb|DQ469962.1| Influenza A virus (A/Ontario/RV1273/2005(H3N2)... 58.0 8e-07
gb|CY012184.1| Influenza A virus (A/New York/765/1993(H3N2)) ... 58.0 8e-07
gb|CY012176.1| Influenza A virus (A/New York/764/1993(H3N2)) ... 58.0 8e-07
gb|CY012168.1| Influenza A virus (A/New York/763/1993(H3N2)) ... 58.0 8e-07
gb|CY012160.1| Influenza A virus (A/New York/762/1993(H3N2)) ... 58.0 8e-07
gb|CY012152.1| Influenza A virus (A/New York/761/1993(H3N2)) ... 58.0 8e-07
gb|CY012136.1| Influenza A virus (A/New York/759/1993(H3N2)) ... 58.0 8e-07
gb|CY011976.1| Influenza A virus (A/Waikato/2/2002(H3N2)) seg... 58.0 8e-07
gb|CY011840.1| Influenza A virus (A/New York/687/1995(H3N2)) ... 58.0 8e-07
gb|CY011816.1| Influenza A virus (A/New York/652/1996(H3N2)) ... 58.0 8e-07
gb|CY011552.1| Influenza A virus (A/New York/674/1995(H3N2)) ... 58.0 8e-07
gb|CY011536.1| Influenza A virus (A/New York/671/1995(H3N2)) ... 58.0 8e-07
gb|CY011512.1| Influenza A virus (A/New York/662/1995(H3N2)) ... 58.0 8e-07
gb|CY011480.1| Influenza A virus (A/Memphis/2/1990(H3N2)) seg... 58.0 8e-07
gb|CY011440.1| Influenza A virus (A/New York/632/1996(H3N2)) ... 58.0 8e-07
gb|DQ534421.1| Influenza A virus (A/Rabat/18/97(H3N2)) hemagg... 58.0 8e-07
gb|DQ534420.1| Influenza A virus (A/Kenitra/17/97(H3N2)) hema... 58.0 8e-07
gb|CY011368.1| Influenza A virus (A/New York/703/1995(H3N2)) ... 58.0 8e-07
gb|CY011320.1| Influenza A virus (A/New York/692/1995(H3N2)) ... 58.0 8e-07
gb|CY010756.1| Influenza A virus (A/Memphis/8/1988(H3N2)) seg... 58.0 8e-07
gb|CY011128.1| Influenza A virus (A/New York/599/1996(H3N2)) ... 58.0 8e-07
gb|DQ150425.1| Influenza A virus (A/swine/MI/PU243/04 (H3N1))... 58.0 8e-07
gb|AF251395.2| Influenza A virus (A/swine/Ontario/00130/97(H3... 58.0 8e-07
gb|DQ145537.1| Influenza A virus (A/swine/Minnesota/00395/200... 58.0 8e-07
gb|DQ508929.1| Influenza A virus (A/Udorn/307/1972(H3N2)) hem... 58.0 8e-07
gb|DQ508833.1| Influenza A virus (A/Beijing/353/1989(H3N2)) h... 58.0 8e-07
gb|DQ508825.1| Influenza A virus (A/Bangkok/01/1979(H3N2)) he... 58.0 8e-07
gb|CY010564.1| Influenza A virus (A/swine/Spain/54008/2004(H3... 58.0 8e-07
gb|CY010716.1| Influenza A virus (A/New York/631/1996(H3N2)) ... 58.0 8e-07
gb|CY010700.1| Influenza A virus (A/New York/625/1996(H3N2)) ... 58.0 8e-07
gb|CY010628.1| Influenza A virus (A/New York/608/1996(H3N2)) ... 58.0 8e-07
gb|CY010588.1| Influenza A virus (A/New York/572/1996(H3N2)) ... 58.0 8e-07
gb|CY009356.1| Influenza A virus (A/England/72(H3N2)) segment... 58.0 8e-07
gb|CY009348.1| Influenza A virus (A/Port Chalmers/73(H3N2)) s... 58.0 8e-07
gb|CY010516.1| Influenza A virus (A/New York/617/1996(H3N2)) ... 58.0 8e-07
gb|CY010068.1| Influenza A virus (A/New York/600/1996(H3N2)) ... 58.0 8e-07
gb|CY010044.1| Influenza A virus (A/New York/594/1996(H3N2)) ... 58.0 8e-07
gb|CY010036.1| Influenza A virus (A/New York/592/1996(H3N2)) ... 58.0 8e-07
gb|CY009996.1| Influenza A virus (A/New York/562/1996(H3N2)) ... 58.0 8e-07
gb|CY009740.1| Influenza A virus (A/New York/590/1996(H3N2)) ... 58.0 8e-07
gb|CY009716.1| Influenza A virus (A/New York/587/1996(H3N2)) ... 58.0 8e-07
gb|CY009692.1| Influenza A virus (A/New York/581/1997(H3N2)) ... 58.0 8e-07
gb|CY009668.1| Influenza A virus (A/New York/574/1996(H3N2)) ... 58.0 8e-07
gb|CY009652.1| Influenza A virus (A/New York/566/1997(H3N2)) ... 58.0 8e-07
gb|CY009524.1| Influenza A virus (A/New York/583/1997(H3N2)) ... 58.0 8e-07
gb|CY009516.1| Influenza A virus (A/New York/579/1997(H3N2)) ... 58.0 8e-07
gb|CY009508.1| Influenza A virus (A/New York/575/1996(H3N2)) ... 58.0 8e-07
gb|CY009476.1| Influenza A virus (A/New York/565/1996(H3N2)) ... 58.0 8e-07
gb|CY009468.1| Influenza A virus (A/New York/564/1997(H3N2)) ... 58.0 8e-07
gb|CY009460.1| Influenza A virus (A/New York/560/1997(H3N2)) ... 58.0 8e-07
gb|CY009636.1| Influenza A virus (A/Udorn/72(H3N2)) segment 4... 58.0 8e-07
gb|CY009908.1| Influenza A virus (A/New York/593/1996(H3N2)) ... 58.0 8e-07
gb|CY009900.1| Influenza A virus (A/New York/584/1996(H3N2)) ... 58.0 8e-07
gb|CY009700.1| Influenza A virus (A/New York/585/1997(H3N2)) ... 58.0 8e-07
gb|CY009684.1| Influenza A virus (A/New York/580/1996(H3N2)) ... 58.0 8e-07
gb|CY009644.1| Influenza A virus (A/New York/558/1997(H3N2)) ... 58.0 8e-07
gb|CY003752.2| Influenza A virus (A/Nanchang/0074/94(H3N2)) s... 58.0 8e-07
gb|CY006203.1| Influenza A virus (A/Nanjing/13/80(H3N2)) segm... 58.0 8e-07
gb|CY003744.1| Influenza A virus (A/Hong Kong/7/84(H3N2)) seg... 58.0 8e-07
gb|CY003736.1| Influenza A virus (A/Hong Kong/5/83(H3N2)) seg... 58.0 8e-07
gb|CY003544.1| Influenza A virus (A/Hong Kong/7/87(H3N2)) seg... 58.0 8e-07
gb|CY003536.1| Influenza A virus (A/Hong Kong/7/85(H3N2)) seg... 58.0 8e-07
gb|CY003528.1| Influenza A virus (A/Hong Kong/11/73(H3N2)) se... 58.0 8e-07
gb|CY003512.1| Influenza A virus (A/Hong Kong/2/88(H3N2)) seg... 58.0 8e-07
gb|CY003504.1| Influenza A virus (A/Hong Kong/6/85(H3N2)) seg... 58.0 8e-07
gb|CY003496.1| Influenza A virus (A/Hong Kong/14/74(H3N2)) se... 58.0 8e-07
gb|CY003064.1| Influenza A virus (A/Memphis/1/90(H3N2)) segme... 58.0 8e-07
gb|CY003112.1| Influenza A virus (A/New York/405/2002(H3N2)) ... 58.0 8e-07
gb|CY002744.1| Influenza A virus (A/Memphis/109/72(H3N2)) seg... 58.0 8e-07
gb|DQ159067.1| Influenza A virus (A/Turkey/Canada-Manitoba/NS... 58.0 8e-07
gb|DQ159066.1| Influenza A virus (A/Turkey/Canada-Ontario/NS-... 58.0 8e-07
gb|DQ159065.1| Influenza A virus (A/Turkey/Canada-Ontario/NS-... 58.0 8e-07
gb|AY589660.1| Influenza A virus (A/Kyongbuk/320/2002(H3N2)) ... 58.0 8e-07
gb|AY589657.1| Influenza A virus (A/Incheon/260/2002(H3N2)) h... 58.0 8e-07
gb|AY589655.1| Influenza A virus (A/Daejeon/258/2002(H3N2)) h... 58.0 8e-07
gb|AY589652.1| Influenza A virus (A/Cheonnam/340/2002(H3N2)) ... 58.0 8e-07
gb|AY589651.1| Influenza A virus (A/Cheonnam/338/2002(H3N2)) ... 58.0 8e-07
gb|AY589650.1| Influenza A virus (A/Cheonnam/323/2002(H3N2)) ... 58.0 8e-07
gb|AY377546.1| Influenza A virus (A/Finland/250/93(H3N2)) hem... 58.0 8e-07
gb|AY377545.1| Influenza A virus (A/Finland/269/93(H3N2)) hem... 58.0 8e-07
gb|AY377544.1| Influenza A virus (A/Finland/270/93(H3N2)) hem... 58.0 8e-07
gb|AY377543.1| Influenza A virus (A/Finland/273/93(H3N2)) hem... 58.0 8e-07
gb|AY377542.1| Influenza A virus (A/Finland/331/93(H3N2)) hem... 58.0 8e-07
gb|AY377541.1| Influenza A virus (A/Finland/321/93(H3N2)) hem... 58.0 8e-07
gb|AF534022.1| Influenza A virus (A/Buenos Aires/4634/96(H3N2... 58.0 8e-07
gb|AF534018.1| Influenza A virus (A/Buenos Aires/4102/95(H3N2... 58.0 8e-07
gb|AF534017.1| Influenza A virus (A/Buenos Aires/4098/95(H3N2... 58.0 8e-07
gb|AF534016.1| Influenza A virus (A/Buenos Aires/4084/95(H3N2... 58.0 8e-07
gb|AF534015.1| Influenza A virus (A/Buenos Aires/4065/95(H3N2... 58.0 8e-07
gb|AF534014.1| Influenza A virus (A/Buenos Aires/4064/95(H3N2... 58.0 8e-07
gb|AF534013.1| Influenza A virus (A/Buenos Aires/4057/95(H3N2... 58.0 8e-07
gb|AF442483.1| Influenza A virus (A/Finland/280/93(H3N2)) hem... 58.0 8e-07
gb|AY462237.1| Influenza A virus (A/Finland/256/93(H3N2)) hem... 58.0 8e-07
gb|U77830.1|IAU77830 Influenza A virus (A/Christ Hospital/231... 58.0 8e-07
gb|AY137206.1| Influenza A virus (A/Guangdong/28/94(H3N2)) he... 58.0 8e-07
gb|AY377129.1| Influenza A virus (A/Gyeongbuk/2/02(H3N2)) hem... 58.0 8e-07
gb|CY002496.1| Influenza A virus (A/Memphis/1/71(H3N2)) segme... 58.0 8e-07
gb|DQ141307.1| Influenza A virus (A/swine/Canada-BC/1A/05(H3)... 58.0 8e-07
gb|CY002272.1| Influenza A virus (A/Memphis/24/95(H3N2)) segm... 58.0 8e-07
gb|DQ132433.1| Influenza A virus (A/turkey/Canada-BC/NS-01529... 58.0 8e-07
gb|CY008676.1| Influenza A virus (A/Memphis/101/72(H3N2)) seg... 58.0 8e-07
gb|CY009068.1| Influenza A virus (A/Memphis/2/85(H3N2)) segme... 58.0 8e-07
gb|CY009052.1| Influenza A virus (A/Memphis/33/83(H3N2)) segm... 58.0 8e-07
gb|CY009012.1| Influenza A virus (A/Nanchang/12/93(H3N2)) seg... 58.0 8e-07
gb|CY009004.1| Influenza A virus (A/Hong Kong/33/73(H3N2)) se... 58.0 8e-07
gb|CY002096.1| Influenza A virus (A/Memphis/102/72(H3N2)) seg... 58.0 8e-07
gb|CY002088.1| Influenza A virus (A/Memphis/66/86(H3N2)) segm... 58.0 8e-07
gb|CY003720.1| Influenza A virus (A/Hong Kong/26/83(H3N2)) se... 58.0 8e-07
gb|CY006811.1| Influenza A virus (A/Memphis/3/73(H3N2)) segme... 58.0 8e-07
gb|AY661210.1| Influenza A virus (A/Nice/491/97(H3N2)) hemagg... 58.0 8e-07
gb|AY661209.1| Influenza A virus (A/Netherlands/5/98(H3N2)) h... 58.0 8e-07
gb|AY661202.1| Influenza A virus (A/Hongkong/1/97(H3N2)) hema... 58.0 8e-07
gb|AY661200.1| Influenza A virus (A/Singapore/1/96(H3N2)) hem... 58.0 8e-07
gb|AY661199.1| Influenza A virus (A/Singapore/1/96(H3N2)) hem... 58.0 8e-07
gb|AY661198.1| Influenza A virus (A/Singapore/1/96(H3N2)) hem... 58.0 8e-07
gb|AY661197.1| Influenza A virus (A/Brisbane/8/96(H3N2)) hema... 58.0 8e-07
gb|AY661195.1| Influenza A virus (A/Geneva/3958/96(H3N2)) hem... 58.0 8e-07
gb|AY661193.1| Influenza A virus (A/Hongkong/20/96(H3N2)) hem... 58.0 8e-07
gb|AY661190.1| Influenza A virus (A/Wuhan/359/95(H3N2)) hemag... 58.0 8e-07
gb|AY661189.1| Influenza A virus (A/Hongkong/55/95(H3N2)) hem... 58.0 8e-07
gb|AY661187.1| Influenza A virus (A/Hongkong/49/95(H3N2)) hem... 58.0 8e-07
gb|AY661186.1| Influenza A virus (A/Hongkong/38/95(H3N2)) hem... 58.0 8e-07
gb|AY661185.1| Influenza A virus (A/Hongkong/32/95(H3N2)) hem... 58.0 8e-07
gb|AY661183.1| Influenza A virus (A/Finland/338/95 (H3N2)) he... 58.0 8e-07
gb|AY661182.1| Influenza A virus (A/Geneva/AI9509/95(H3N2)) h... 58.0 8e-07
gb|AY661168.1| Influenza A virus (A/Lyon/672/93(H3N2)) hemagg... 58.0 8e-07
gb|AY661161.1| Influenza A virus (A/Stockholm/20/93(H3N2)) he... 58.0 8e-07
gb|AY661158.1| Influenza A virus (A/Wellington/59/93(H3N2)) h... 58.0 8e-07
gb|AY661155.1| Influenza A virus (A/Akita/4/93(H3N2)) hemaggl... 58.0 8e-07
gb|AY661151.1| Influenza A virus (A/Madrid/G252/93(H3N2)) hem... 58.0 8e-07
gb|AY661149.1| Influenza A virus (A/Netherlands/179/93(H3N2))... 58.0 8e-07
gb|AY661147.1| Influenza A virus (A/Madrid/G122/93(H3N2)) hem... 58.0 8e-07
gb|AY661145.1| Influenza A virus (A/Madrid/G109/93(H3N2)) hem... 58.0 8e-07
gb|AY661141.1| Influenza A virus (A/Netherlands/126/93 (H3N2)... 58.0 8e-07
gb|AY661140.1| Influenza A virus (A/Netherlands/115/93 (H3N2)... 58.0 8e-07
gb|AY661125.1| Influenza A virus (A/Netherlands/938/92(H3N2))... 58.0 8e-07
gb|AY661076.1| Influenza A virus (A/Canberra/1/91(H3N2)) hema... 58.0 8e-07
gb|AY661074.1| Influenza A virus (A/Shanghai/24/90(H3N2)) hem... 58.0 8e-07
gb|AY661072.1| Influenza A virus (A/Seoul/1/90(H3N2)) hemaggl... 58.0 8e-07
gb|AY661071.1| Influenza A virus (A/Atlanta/211/89(H3N2)) hem... 58.0 8e-07
gb|AY661070.1| Influenza A virus (A/Memphis/5/90(H3N2)) hemag... 58.0 8e-07
gb|AY661069.1| Influenza A virus (A/Memphis/2/90(H3N2)) hemag... 58.0 8e-07
gb|AY661068.1| Influenza A virus (A/Netherlands/650/89 (H3N2)... 58.0 8e-07
gb|AY661067.1| Influenza A virus (A/Netherlands/620/89 (H3N2)... 58.0 8e-07
gb|AY661066.1| Influenza A virus (A/Beijing/353/89(H3N2)) hem... 58.0 8e-07
gb|AY661065.1| Influenza A virus (A/Victoria/1/89(H3N2)) hema... 58.0 8e-07
gb|AY661064.1| Influenza A virus (A/Singapore/53/89(H3N2)) he... 58.0 8e-07
gb|AY661063.1| Influenza A virus (A/Singapore/40/89(H3N2)) he... 58.0 8e-07
gb|AY661062.1| Influenza A virus (A/Singapore/36/89(H3N2)) he... 58.0 8e-07
gb|AY661061.1| Influenza A virus (A/Singapore/35/89(H3N2)) he... 58.0 8e-07
gb|AY661060.1| Influenza A virus (A/Singapore/34/89(H3N2)) he... 58.0 8e-07
gb|AY661059.1| Influenza A virus (A/Hongkong/1/89(H3N2)) hema... 58.0 8e-07
gb|AY661058.1| Influenza A virus (A/Wellington/5/89(H3N2)) he... 58.0 8e-07
gb|AY661057.1| Influenza A virus (A/Geneva/5007/89(H3N2)) hem... 58.0 8e-07
gb|AY661056.1| Influenza A virus (A/Stockholm/12/88(H3N2)) he... 58.0 8e-07
gb|AY661053.1| Influenza A virus (A/Colorado/2/86(H3N2)) hema... 58.0 8e-07
gb|AY661051.1| Influenza A virus (A/Guildford/V728/85(H3N2)) ... 58.0 8e-07
gb|AY661050.1| Influenza A virus (A/Wellington/4/85(H3N2)) he... 58.0 8e-07
gb|AY661048.1| Influenza A virus (A/Netherlands/241/82(H3N2))... 58.0 8e-07
gb|AY661047.1| Influenza A virus (A/Netherlands/209/80(H3N2))... 58.0 8e-07
gb|AY661046.1| Influenza A virus (A/Rotterdam/577/80(H3N2)) h... 58.0 8e-07
gb|AY661042.1| Influenza A virus (A/Bilthoven/5930/74(H3N2)) ... 58.0 8e-07
gb|AY661041.1| Influenza A virus (A/Bilthoven/21793/72(H3N2))... 58.0 8e-07
gb|AY661029.1| Influenza A virus (A/Netherlands/738/89(H3N2))... 58.0 8e-07
gb|AY661025.1| Influenza A virus (A/Netherlands/233/82(H3N2))... 58.0 8e-07
gb|AY661018.1| Influenza A virus (A/Bilthoven/5146/74(H3N2)) ... 58.0 8e-07
gb|AY661017.1| Influenza A virus (A/Bilthoven/5931/74(H3N2)) ... 58.0 8e-07
gb|AY661016.1| Influenza A virus (A/Oslo/13676/83(H3N2)) hema... 58.0 8e-07
gb|AY661015.1| Influenza A virus (A/Bilthoven/10684/82(H3N2))... 58.0 8e-07
gb|AY661014.1| Influenza A virus (A/Bilthoven/4791/81(H3N2)) ... 58.0 8e-07
gb|AY661005.1| Influenza A virus (A/Bilthoven/9459/74(H3N2)) ... 58.0 8e-07
gb|AY661004.1| Influenza A virus (A/Bilthoven/3517/73(H3N2)) ... 58.0 8e-07
gb|AY661003.1| Influenza A virus (A/Bilthoven/748/73(H3N2)) h... 58.0 8e-07
gb|AY661002.1| Influenza A virus (A/Bilthoven/552/73(H3N2)) h... 58.0 8e-07
gb|AY661000.1| Influenza A virus (A/Bilthoven/23290/72(H3N2))... 58.0 8e-07
gb|AY660999.1| Influenza A virus (A/Bilthoven/6022/72(H3N2)) ... 58.0 8e-07
gb|AY660998.1| Influenza A virus (A/Bilthoven/21801/71(H3N2))... 58.0 8e-07
gb|AY660997.1| Influenza A virus (A/Bilthoven/21438/71(H3N2))... 58.0 8e-07
gb|AF525217.1| Influenza A virus (A/Guangdong/04/96 (H3N2)) h... 58.0 8e-07
gb|AF525218.1| Influenza A virus (A/Guangdong/01/95 (H3N2)) h... 58.0 8e-07
gb|AF525219.1| Influenza A virus (A/Guangdong/08/95 (H3N2)) h... 58.0 8e-07
gb|AF525686.1| Influenza A virus (A/Guangdong/08/96(H3N2)) he... 58.0 8e-07
gb|CY006331.2| Influenza A virus (A/Nanchang/A2/94(H3N2)) seg... 58.0 8e-07
gb|CY008660.1| Influenza A virus (A/Memphis/1/80(H3N2)) segme... 58.0 8e-07
gb|CY008708.1| Influenza A virus (A/Memphis/7/85(H3N2)) segme... 58.0 8e-07
gb|CY008716.1| Influenza A virus (A/Memphis/11/86(H3N2)) segm... 58.0 8e-07
gb|CY008724.1| Influenza A virus (A/Memphis/5/88(H3N2)) segme... 58.0 8e-07
gb|CY008732.1| Influenza A virus (A/Memphis/15/88(H3N2)) segm... 58.0 8e-07
gb|CY008740.1| Influenza A virus (A/Memphis/7/90(H3N2)) segme... 58.0 8e-07
gb|AF368446.1| Influenza A virus (A/Oslo/244/97 (H3N2)) hemag... 58.0 8e-07
gb|AF368445.1| Influenza A virus (A/Oslo/185/97 (H3N2)) hemag... 58.0 8e-07
gb|AF368444.1| Influenza A virus (A/Oslo/21/97 (H3N2)) hemagg... 58.0 8e-07
gb|AF368443.1| Influenza A virus (A/Finland/532/97 (H3N2)) he... 58.0 8e-07
gb|AF368442.1| Influenza A virus (A/Finland/529/97 (H3N2)) he... 58.0 8e-07
gb|AF368441.1| Influenza A virus (A/Finland/528/97 (H3N2)) he... 58.0 8e-07
gb|AF368440.1| Influenza A virus (A/Finland/524/97 (H3N2)) he... 58.0 8e-07
gb|AF368439.1| Influenza A virus (A/Finland/460/97 (H3N2)) he... 58.0 8e-07
gb|AF368438.1| Influenza A virus (A/Finland/447/96 (H3N2)) he... 58.0 8e-07
gb|AF368436.1| Influenza A virus (A/Finland/338/95 (H3N2)) he... 58.0 8e-07
gb|CY008684.1| Influenza A virus (A/Memphis/105/72(H3N2)) seg... 58.0 8e-07
gb|AF405212.1| Influenza A virus (A/Oregon/4/80(H3N2)) hemagg... 58.0 8e-07
gb|AF405211.1| Influenza A virus (A/Baylor5B/85(H3N2)) hemagg... 58.0 8e-07
gb|AF405210.1| Influenza A virus (A/Baylor4A/83(H3N2)) hemagg... 58.0 8e-07
gb|AF405209.1| Influenza A virus (A/Baylor3A/83(H3N2)) hemagg... 58.0 8e-07
gb|AF405208.1| Influenza A virus (A/Baylor2A/81(H3N2)) hemagg... 58.0 8e-07
gb|AF405207.1| Influenza A virus (A/Baylor1B/83(H3N2)) hemagg... 58.0 8e-07
gb|AF405206.1| Influenza A virus (A/Baylor1A/81(H3N2)) hemagg... 58.0 8e-07
gb|AF363504.1| Influenza A virus (A/Paris/908/97(H3N2)) hemag... 58.0 8e-07
gb|AF363503.1| Influenza A virus (A/Paris/906/97(H3N2)) hemag... 58.0 8e-07
gb|AF363502.1| Influenza A virus (A/Paris/896/97(H3N2)) hemag... 58.0 8e-07
dbj|D00931.1|FLA6476HA Influenza A virus (A/duck/Hong Kong/64... 58.0 8e-07
dbj|D10162.1|FLAG89HA Influenza A virus (A/Guizhou/54/89(H3N2... 58.0 8e-07
dbj|D10161.1|FLAS87HA Influenza A virus (A/Sichuan/02/87(H3N2... 58.0 8e-07
gb|AF357962.1|AF357962 Influenza A virus (A/Madrid/SO1747/98(... 58.0 8e-07
gb|AF357938.1|AF357938 Influenza A virus (A/Granada/R198/96(H... 58.0 8e-07
gb|AY262745.1| Influenza A virus (A/Finland/300/93(H3N2)) hae... 58.0 8e-07
emb|Z46411.1| Influenza A virus (A/Madrid/252/1993(H3N2)) mRN... 58.0 8e-07
emb|Z46394.1| Influenza A virus (A/England/247/1993(H3N2)) mR... 58.0 8e-07
emb|Z46391.1| Influenza A virus (A/Beijing/353/1989(H3N2)) mR... 58.0 8e-07
emb|Z46410.1| Influenza A virus (A/Hong Kong/23/1992(H3N2)) m... 58.0 8e-07
emb|Z46409.1| Influenza A virus (A/Hong Kong/34/1990(H3N2)) m... 58.0 8e-07
emb|Z46406.1| Influenza A virus (A/Guangdong/25/1993(H3N2)) m... 58.0 8e-07
emb|Z46392.1| Influenza A virus (A/Beijing/32/1992(H3N2)) mRN... 58.0 8e-07
emb|Z46408.1| Influenza A virus (A/Hong Kong/2/1994(H3N2)) mR... 58.0 8e-07
emb|X75800.1| Influenza A virus (Beijing/352/1989,(highgrowth... 58.0 8e-07
gb|CY008172.1| Influenza A virus (A/Nanjing/28/84(H3N2)) segm... 58.0 8e-07
gb|CY008468.1| Influenza A virus (A/Memphis/3/80(H3N2)) segme... 58.0 8e-07
gb|CY008460.1| Influenza A virus (A/Memphis/103/72(H3N2)) seg... 58.0 8e-07
gb|CY008452.1| Influenza A virus (A/Memphis/5/85(H3N2)) segme... 58.0 8e-07
emb|V01089.1|ORIN15 Influenza A virus (A/Memphis/102/72(H3N2)... 58.0 8e-07
gb|AF008894.1|AF008894 Influenza A virus (A/Baylor5A/Texas/12... 58.0 8e-07
gb|AF008907.1|AF008907 Influenza A virus (A/Baylor4B/Texas/39... 58.0 8e-07
gb|AF008891.1|AF008891 Influenza A virus (A/Baylor3B/Texas/24... 58.0 8e-07
gb|AF380346.1|AF380346 Influenza A virus (A/England/42/72.var... 58.0 8e-07
gb|AF386612.1|AF386612 Influenza A virus (A/Pusan/10/98(H3N2)... 58.0 8e-07
gb|AF386611.1|AF386611 Influenza A virus (A/Seoul/47/91(H3N2)... 58.0 8e-07
gb|AF386610.1|AF386610 Influenza A virus (A/Seoul/46/91(H3N2)... 58.0 8e-07
gb|AF386607.1|AF386607 Influenza A virus (A/Seoul/22/90(H3N2)... 58.0 8e-07
gb|AF386606.1|AF386606 Influenza A virus (A/Seoul/50/91(H3N2)... 58.0 8e-07
gb|AF386605.1|AF386605 Influenza A virus (A/Seoul/16/89(H3N2)... 58.0 8e-07
gb|AF386604.1|AF386604 Influenza A virus (A/Seoul/11/88(H3N2)... 58.0 8e-07
emb|AJ311511.1|INA311511 Influenza A virus partial HA gene fo... 58.0 8e-07
emb|AJ293933.1|IVI293933 Influenza A virus (A/Swine/Cote d'Ar... 58.0 8e-07
emb|AJ293932.1|IVI293932 Influenza A virus (A/swine/Italy/151... 58.0 8e-07
emb|AJ293930.1|IVI293930 Influenza A virus (A/swine/Italy/146... 58.0 8e-07
gb|AF311680.1|AF311680 Influenza A virus (A/Finland/572/98(H3... 58.0 8e-07
gb|AF311679.1|AF311679 Influenza A virus (A/Finland/571/98(H3... 58.0 8e-07
gb|AF311678.1|AF311678 Influenza A virus (A/Finland/445/96(H3... 58.0 8e-07
gb|AF311676.1|AF311676 Influenza A virus (A/Finland/539/97(H3... 58.0 8e-07
gb|AF315567.1|AF315567 Influenza A virus (A/Greece/1/97 (H3N2... 58.0 8e-07
gb|AF315561.1|AF315561 Influenza A virus (A/Athens/94/98 (H3N... 58.0 8e-07
gb|AF268126.1|AF268126 Influenza A virus (A/Swine/Wisconsin/1... 58.0 8e-07
gb|AF268124.1|AF268124 Influenza A virus (A/Swine/Illinois/21... 58.0 8e-07
gb|AF268123.1|AF268123 Influenza A virus (A/Swine/Oklahoma/18... 58.0 8e-07
gb|AF233691.1|AF233691 Influenza A virus (A/Philippines/2/82(... 58.0 8e-07
gb|AF201845.1|AF201845 Influenza A virus (A/Praha/2/83(HI plu... 58.0 8e-07
gb|AF201844.1|AF201844 Influenza A virus (A/Belgium/2/81) hem... 58.0 8e-07
gb|AF201843.1|AF201843 Influenza A virus (A/BANGKOK/1/79) hem... 58.0 8e-07
gb|AF201842.1|AF201842 Influenza A virus (A/Dunedin/4/73) hem... 58.0 8e-07
gb|AF201875.1|AF201875 Influenza A virus (A/England/42/72(H3N... 58.0 8e-07
gb|DQ335771.1| Influenza A virus (A/turkey/Ohio/313053/04(H3N... 58.0 8e-07
gb|CY007835.1| Influenza A virus (A/Nanchang/A1/94(H3N2)) seg... 58.0 8e-07
gb|CY007971.1| Influenza A virus (A/Guandong/243/72(H3N2)) se... 58.0 8e-07
gb|AF092063.1|AF092063 Influenza A virus (A/Wellington/4/85) ... 58.0 8e-07
gb|AF092062.1|AF092062 Influenza A virus (A/Port Chalmers/1/7... 58.0 8e-07
gb|AF180661.1| Influenza A virus (A/Brazil/597/96(H3N2)) hema... 58.0 8e-07
gb|AF180660.1| Influenza A virus (A/Brazil/184/96(H3N2)) hema... 58.0 8e-07
gb|AF180659.1| Influenza A virus (A/Brazil/45/96(H3N2)) hemag... 58.0 8e-07
gb|AF180658.1| Influenza A virus (A/Brazil/3/96(H3N2)) hemagg... 58.0 8e-07
gb|AF180656.1| Influenza A virus (A/Rhode Island/7/97(H3N2)) ... 58.0 8e-07
gb|AF180655.1| Influenza A virus (A/Guadeloupe/39/96(H3N2)) h... 58.0 8e-07
gb|AF180654.1| Influenza A virus (A/France/75/97(H3N2)) hemag... 58.0 8e-07
gb|AF180653.1| Influenza A virus (A/Guam/1014/96(H3N2)) hemag... 58.0 8e-07
gb|AF180652.1| Influenza A virus (A/thailand/94/96(H3N2)) hem... 58.0 8e-07
gb|AF180651.1| Influenza A virus (A/Brazil/309/96(H3N2)) hema... 58.0 8e-07
gb|AF180650.1| Influenza A virus (A/New York/37/96(H3N2)) hem... 58.0 8e-07
gb|AF180649.1| Influenza A virus (A/Brazil/43/97(H3N2)) hemag... 58.0 8e-07
gb|AF180648.1| Influenza A virus (A/Brazil/51/97(H3N2)) hemag... 58.0 8e-07
gb|AF180647.1| Influenza A virus (A/Canada/101/97(H3N2)) hema... 58.0 8e-07
gb|AF180646.1| Influenza A virus (A/Moscow/2/97(H3N2)) hemagg... 58.0 8e-07
gb|AF180645.1| Influenza A virus (A/Missouri/11/96(H3N2)) hem... 58.0 8e-07
gb|AF180644.1| Influenza A virus (A/Pennsylvania/2/97(H3N2)) ... 58.0 8e-07
gb|AF180643.1| Influenza A virus (A/Johannesburg/10/97(H3N2))... 58.0 8e-07
gb|AF180640.1| Influenza A virus (A/Minnesota/1/97(H3N2)) hem... 58.0 8e-07
gb|AF180639.1| Influenza A virus (A/New York/43/96(H3N2)) hem... 58.0 8e-07
gb|AF180638.1| Influenza A virus (A/New York/50/96(H3N2)) hem... 58.0 8e-07
gb|AF180637.1| Influenza A virus (A/Missouri/10/96(H3N2)) hem... 58.0 8e-07
gb|AF180636.1| Influenza A virus (A/California/13/96(H3N2)) h... 58.0 8e-07
gb|AF180635.1| Influenza A virus (A/Texas/9/96(H3N2)) hemaggl... 58.0 8e-07
gb|AF180630.1| Influenza A virus (A/Bangkok/1/97(H3N2)) hemag... 58.0 8e-07
gb|AF180628.1| Influenza A virus (A/Nanchang/813/95(H3N2)) he... 58.0 8e-07
gb|AF180627.1| Influenza A virus (A/Montevideo/318/96(H3N2)) ... 58.0 8e-07
gb|AF180626.1| Influenza A virus (A/Delaware/4/97(H3N2)) hema... 58.0 8e-07
gb|AF180625.1| Influenza A virus (A/Minnesota/1/96(H3N2)) hem... 58.0 8e-07
gb|AF180624.1| Influenza A virus (A/Caracas/465/96(H3N2)) hem... 58.0 8e-07
gb|AF180623.1| Influenza A virus (A/Caracas/422/97(H3N2)) hem... 58.0 8e-07
gb|AF180622.1| Influenza A virus (A/Yokohama/68/96(H3N2)) hem... 58.0 8e-07
gb|AF180619.1| Influenza A virus (A/Guangdong/1/96(H3N2)) hem... 58.0 8e-07
gb|AF180567.1| Influenza A virus (A/Louisiana/1/93(H3N2)) hem... 58.0 8e-07
gb|AF180565.1| Influenza A virus (A/Hebei/12/93(H3N2)) hemagg... 58.0 8e-07
gb|AF204238.1|AF204238 Influenza A virus (A/England/427/88(H3... 58.0 8e-07
dbj|D21173.1|FLAHAH2 Influenza A virus (A/Sichuan/2/87(H3N2))... 58.0 8e-07
dbj|AB019357.1| Influenza A virus (A/Nagasaki/97/95(H3N2)) HA... 58.0 8e-07
dbj|AB019354.1| Influenza A virus (A/Nagasaki/48/95(H3N2)) HA... 58.0 8e-07
dbj|D30663.1|FLASPH2 Influenza A virus (A/Washington/15/91(H3... 58.0 8e-07
dbj|D30662.1|FLASPH1 Influenza A virus (A/Brazil/02/91(H3N2))... 58.0 8e-07
dbj|D30668.1|FLAH5 Influenza A virus (A/Hebei/12/93(H3N2)) ge... 58.0 8e-07
gb|AF008906.1|AF008906 Influenza A virus (A/Tonga/23/85(H3N2)... 58.0 8e-07
gb|AF008904.1|AF008904 Influenza A virus (A/Yokohama/C5/85(H3... 58.0 8e-07
gb|AF008902.1|AF008902 Influenza A virus (A/Yamagata/96/85(H3... 58.0 8e-07
gb|AF008901.1|AF008901 Influenza A virus (A/Bangkok/25/(H3N2)... 58.0 8e-07
gb|AF008900.1|AF008900 Influenza A virus (A/Gumma/346/(H3N2))... 58.0 8e-07
gb|AF008899.1|AF008899 Influenza A virus (A/Bangkok/(H3N2)) h... 58.0 8e-07
gb|AF008898.1|AF008898 Influenza A virus (A/Stockholm/8/(H3N2... 58.0 8e-07
gb|AF008897.1|AF008897 Influenza A virus (A/Czechoslovakia/4/... 58.0 8e-07
gb|AF008896.1|AF008896 Influenza A virus (A/Christ_Church/4/(... 58.0 8e-07
gb|AF008895.1|AF008895 Influenza A virus (A/Christ_Church/1/(... 58.0 8e-07
gb|AF008893.1|AF008893 Influenza A virus (A/Mississippi/1/(H3... 58.0 8e-07
gb|AF008890.1|AF008890 Influenza A virus (A/Colorado/2/(H3N2)... 58.0 8e-07
gb|AF008889.1|AF008889 Influenza A virus (A/Guizhou/1/(H3N2))... 58.0 8e-07
gb|AF008887.1|AF008887 Influenza A virus (A/Qingdao/10/(H3N2)... 58.0 8e-07
gb|AF008886.1|AF008886 Influenza A virus (A/Shanghai/11/(H3N2... 58.0 8e-07
gb|AF008885.1|AF008885 Influenza A virus (A/Los_Angeles/(H3N2... 58.0 8e-07
gb|AF008884.1|AF008884 Influenza A virus (A/Sichuan/2/(H3N2))... 58.0 8e-07
gb|AF008883.1|AF008883 Influenza A virus (A/Guangdong/9/(H3N2... 58.0 8e-07
gb|AF008882.1|AF008882 Influenza A virus (A/Sydney/1/(H3N2)) ... 58.0 8e-07
gb|AF008881.1|AF008881 Influenza A virus (A/Kobe/768/88(H3N2)... 58.0 8e-07
gb|AF008880.1|AF008880 Influenza A virus (A/Chiba/38/88(H3N2)... 58.0 8e-07
gb|AF008879.1|AF008879 Influenza A virus (A/Tokyo/1276/(H3N2)... 58.0 8e-07
gb|AF008878.1|AF008878 Influenza A virus (A/Tokyo/1275/(H3N2)... 58.0 8e-07
gb|AF008877.1|AF008877 Influenza A virus (A/Yamaneshi/497/(H3... 58.0 8e-07
gb|AF008876.1|AF008876 Influenza A virus (A/Fukuoka/C29/(H3N2... 58.0 8e-07
gb|AF008875.1|AF008875 Influenza A virus (A/Connecticut/4/(H3... 58.0 8e-07
gb|AF008874.1|AF008874 Influenza A virus (A/Texas/24752/(H3N2... 58.0 8e-07
gb|AF008873.1|AF008873 Influenza A virus (A/New_Jersey/4/(H3N... 58.0 8e-07
gb|AF008872.1|AF008872 Influenza A virus (A/Michigan/1/(H3N2)... 58.0 8e-07
gb|AF008871.1|AF008871 Influenza A virus (A/Texas/17988/84(H3... 58.0 8e-07
gb|AF008870.1|AF008870 Influenza A virus (A/Texas/18733/84(H3... 58.0 8e-07
gb|AF008869.1|AF008869 Influenza A virus (A/Texas/18088/84(H3... 58.0 8e-07
gb|AF008868.1|AF008868 Influenza A virus (A/Oita/3/83(H3N2)) ... 58.0 8e-07
gb|AF008867.1|AF008867 Influenza A virus (A/Caen/1/84(H3N2)) ... 58.0 8e-07
gb|AF008860.1|AF008860 Influenza A virus (A/New_York/15/94(H3... 58.0 8e-07
gb|AF008858.1|AF008858 Influenza A virus (A/Wuzhou/1/94(H3N2)... 58.0 8e-07
gb|AF008856.1|AF008856 Influenza A virus (A/Harbin/3/94(H3N2)... 58.0 8e-07
gb|AF008855.1|AF008855 Influenza A virus (A/California/4/94(H... 58.0 8e-07
gb|AF008854.1|AF008854 Influenza A virus (A/Waikato/20/93(H3N... 58.0 8e-07
gb|AF008853.1|AF008853 Influenza A virus (A/Ulan_Ude/44/94(H3... 58.0 8e-07
gb|AF008849.1|AF008849 Influenza A virus (A/North_Carolina/93... 58.0 8e-07
gb|AF008848.1|AF008848 Influenza A virus (A/Guangdong/27/94(H... 58.0 8e-07
gb|AF008847.1|AF008847 Influenza A virus (A/New_York/38/93(H3... 58.0 8e-07
gb|AF008846.1|AF008846 Influenza A virus (A/Texas/57/93(H3N2)... 58.0 8e-07
gb|AF008845.1|AF008845 Influenza A virus (A/New_York/3/93(H3N... 58.0 8e-07
gb|AF008843.1|AF008843 Influenza A virus (A/Spain/190/93(H3N2... 58.0 8e-07
gb|AF008842.1|AF008842 Influenza A virus (A/Spain/125/93(H3N2... 58.0 8e-07
gb|AF008841.1|AF008841 Influenza A virus (A/Georgia/3/93(H3N2... 58.0 8e-07
gb|AF008840.1|AF008840 Influenza A virus (A/England/220/93(H3... 58.0 8e-07
gb|AF008839.1|AF008839 Influenza A virus (A/New_York/26/93(H3... 58.0 8e-07
gb|AF008838.1|AF008838 Influenza A virus (A/Alaska/18/93(H3N2... 58.0 8e-07
gb|AF008837.1|AF008837 Influenza A virus (A/Christ_Church/8/9... 58.0 8e-07
gb|AF008836.1|AF008836 Influenza A virus (A/Ann_Arbor/3/93(H3... 58.0 8e-07
gb|AF008830.1|AF008830 Influenza A virus (A/Louisiana/6/93(H3... 58.0 8e-07
gb|AF008829.1|AF008829 Influenza A virus (A/Louisiana/4/93(H3... 58.0 8e-07
gb|AF008828.1|AF008828 Influenza A virus (A/Guangdong/25/93(H... 58.0 8e-07
gb|AF008827.1|AF008827 Influenza A virus (A/Argentina/3105/93... 58.0 8e-07
gb|AF008824.1|AF008824 Influenza A virus (A/Hong_Kong/23/92(H... 58.0 8e-07
gb|AF008822.1|AF008822 Influenza A virus (A/Nanchang/3396/93(... 58.0 8e-07
gb|AF008813.1|AF008813 Influenza A virus (A/Beijing/46/92(H3N... 58.0 8e-07
gb|AF008809.1|AF008809 Influenza A virus (A/Harbin/15/92(H3N2... 58.0 8e-07
gb|AF008808.1|AF008808 Influenza A virus (A/Guangdong/4/93(H3... 58.0 8e-07
gb|AF008807.1|AF008807 Influenza A virus (A/Ningxia/10/93(H3N... 58.0 8e-07
gb|AF008806.1|AF008806 Influenza A virus (A/Sichuan/4/93(H3N2... 58.0 8e-07
gb|AF008805.1|AF008805 Influenza A virus (A/Wuzhou/4/93(H3N2)... 58.0 8e-07
gb|AF008804.1|AF008804 Influenza A virus (A/Russia/58/93(H3N2... 58.0 8e-07
gb|AF008803.1|AF008803 Influenza A virus (A/Nanchang/58/93(H3... 58.0 8e-07
gb|AF008802.1|AF008802 Influenza A virus (A/Nanchang/3332/93(... 58.0 8e-07
gb|AF008801.1|AF008801 Influenza A virus (A/Nangchang/12/93(H... 58.0 8e-07
gb|AF008767.1|AF008767 Influenza A virus (A/Virginia/25/94(H3... 58.0 8e-07
gb|AF008766.1|AF008766 Influenza A virus (A/Guangxi/42/95(H3N... 58.0 8e-07
gb|AF008765.1|AF008765 Influenza A virus (A/CNIC/22/95(H3N2))... 58.0 8e-07
gb|AF008764.1|AF008764 Influenza A virus (A/Argentina/4057/95... 58.0 8e-07
gb|AF008763.1|AF008763 Influenza A virus (A/Shangdong/5/94(H3... 58.0 8e-07
gb|AF008762.1|AF008762 Influenza A virus (A/Beijing/281/94(H3... 58.0 8e-07
gb|AF008761.1|AF008761 Influenza A virus (A/Washington/186/94... 58.0 8e-07
gb|AF008760.1|AF008760 Influenza A virus (A/Canada/147/95(H3N... 58.0 8e-07
gb|AF008759.1|AF008759 Influenza A virus (A/Hong_Kong/38/95(H... 58.0 8e-07
gb|AF008758.1|AF008758 Influenza A virus (A/Singapore/28/95(H... 58.0 8e-07
gb|AF008757.1|AF008757 Influenza A virus (A/New_Jersey/11/94(... 58.0 8e-07
gb|AF008756.1|AF008756 Influenza A virus (A/Singapore/27/95(H... 58.0 8e-07
gb|AF008755.1|AF008755 Influenza A virus (A/Hong_Kong/3/95(H3... 58.0 8e-07
gb|AF008754.1|AF008754 Influenza A virus (A/Germany/767/95(H3... 58.0 8e-07
gb|AF008753.1|AF008753 Influenza A virus (A/West_Virginia/1/9... 58.0 8e-07
gb|AF008752.1|AF008752 Influenza A virus (A/Germany/578652/95... 58.0 8e-07
gb|AF008750.1|AF008750 Influenza A virus (A/Nebraska/11/95(H3... 58.0 8e-07
gb|AF008749.1|AF008749 Influenza A virus (A/Kwangju/1/95(H3N2... 58.0 8e-07
gb|AF008748.1|AF008748 Influenza A virus (A/Alaska/10/95(H3N2... 58.0 8e-07
dbj|D49967.1|FLAH3N2I Influenza A virus (A/Shiga/2/91(H3N2)) ... 58.0 8e-07
dbj|D49966.1|FLAH3N2H Influenza A virus (A/Bangkok/144/90(H3N... 58.0 8e-07
dbj|D49965.1|FLAH3N2G Influenza A virus (A/Bangkok/139/90(H3N... 58.0 8e-07
dbj|D49964.1|FLAH3N2F Influenza A virus (A/OMS/7026/89(H3N2))... 58.0 8e-07
dbj|D49963.1|FLAH3N2E Influenza A virus (A/Guizhou/54/89(H3N2... 58.0 8e-07
dbj|D49962.1|FLAH3N2D Influenza A virus (A/Bangkok/235/89(H3N... 58.0 8e-07
dbj|D49961.1|FLAH3N2C Influenza A virus (A/Beijing/352/89(H3N... 58.0 8e-07
dbj|D49960.1|FLAH3N2B Influenza A virus (A/Hokkaido/20/89(H3N... 58.0 8e-07
dbj|D49959.1|FLAH3N2 Influenza A virus (A/Sichuan/02/87(H3N2)... 58.0 8e-07
gb|AF131998.1|AF131998 Influenza A virus (A/Lyon/1781/96 (H3N... 58.0 8e-07
gb|AF131997.1|AF131997 Influenza A virus (A/Lyon/1781/96 (H3N... 58.0 8e-07
gb|AF131996.1|AF131996 Influenza A virus (A/Lyon/1781/96 (H3N... 58.0 8e-07
gb|CY006891.1| Influenza A virus (A/Memphis/9/80(H3N2)) segme... 58.0 8e-07
gb|CY006907.1| Influenza A virus (A/Hong Kong/49/74(H3N2)) se... 58.0 8e-07
gb|CY007627.1| Influenza A virus (A/Memphis/1/81(H3N2)) segme... 58.0 8e-07
gb|CY007619.1| Influenza A virus (A/Memphis/4/80(H3N2)) segme... 58.0 8e-07
gb|U65559.1|IAU65559 Influenza A virus H3N2 strain A/Niigata/... 58.0 8e-07
gb|U65558.1|IAU65558 Influenza A virus H3N2 strain A/Ibaraki/... 58.0 8e-07
gb|U65556.1|IAU65556 Influenza A virus H3N2 strain A/Kagoshim... 58.0 8e-07
gb|U65555.1|IAU65555 Influenza A virus H3N2 strain A/Gifu/2/9... 58.0 8e-07
gb|U65552.1|IAU65552 Influenza A virus H3N2 strain A/Saga/447... 58.0 8e-07
dbj|AB043707.1| Influenza A virus (A/Aichi/4/93(H3N2)) HA gen... 58.0 8e-07
gb|U65554.1|IAU65554 Influenza A virus H3N2 strain A/Tochigi/... 58.0 8e-07
gb|U08905.1|IVU08905 Influenza virus A/Philippines/2/82/BS/ML... 58.0 8e-07
gb|AF038268.1|AF038268 Influenza A virus H3N2 A/Wuhan/359/95 ... 58.0 8e-07
gb|AF038267.1|AF038267 Influenza A virus H3N2 A/Niigata/137/9... 58.0 8e-07
gb|CY003352.1| Influenza A virus (A/Memphis/13/88(H3N2)) segm... 58.0 8e-07
gb|CY006219.1| Influenza A virus (A/Memphis/2/71(H3N2)) segme... 58.0 8e-07
gb|AF008731.1|AF008731 Influenza A virus (A/Wisconsin/3/96(H3... 58.0 8e-07
gb|AF008730.1|AF008730 Influenza A virus (A/Taiwan/523/96(H3N... 58.0 8e-07
gb|AF008729.1|AF008729 Influenza A virus (A/Washington/5/96(H... 58.0 8e-07
gb|AF008728.1|AF008728 Influenza A virus (A/Shanghai/9/95(H3N... 58.0 8e-07
gb|AF008727.1|AF008727 Influenza A virus (A/New_York/9/96(H3N... 58.0 8e-07
gb|AF008726.1|AF008726 Influenza A virus (A/Fujian/47/96(H3N2... 58.0 8e-07
gb|AF008725.1|AF008725 Influenza A virus (A/Nanchang/933/95(H... 58.0 8e-07
gb|AF008723.1|AF008723 Influenza A virus (A/Alaska/2/96(H3N2)... 58.0 8e-07
gb|AF008722.1|AF008722 Influenza A virus (A/Wuhan/359/95(H3N2... 58.0 8e-07
gb|AF008721.1|AF008721 Influenza A virus (A/CNIC/35/96(H3N2))... 58.0 8e-07
gb|AF008720.1|AF008720 Influenza A virus (A/Brisbane/22/96(H3... 58.0 8e-07
gb|AF008719.1|AF008719 Influenza A virus (A/Wellington/48/96(... 58.0 8e-07
gb|AF008718.1|AF008718 Influenza A virus (A/Hawaii/2/96(H3N2)... 58.0 8e-07
gb|AF008717.1|AF008717 Influenza A virus (A/Christ_Church/1/9... 58.0 8e-07
gb|AF008716.1|AF008716 Influenza A virus (A/Brisbane/35/96(H3... 58.0 8e-07
gb|AF008715.1|AF008715 Influenza A virus (A/Auckland/9/96(H3N... 58.0 8e-07
gb|AF008714.1|AF008714 Influenza A virus (A/Auckland/5/96(H3N... 58.0 8e-07
gb|AF008707.1|AF008707 Influenza A virus (A/Guangzhou/6/96(H3... 58.0 8e-07
gb|AF008706.1|AF008706 Influenza A virus (A/Wuzhou/19/96(H3N2... 58.0 8e-07
gb|AF008705.1|AF008705 Influenza A virus (A/Shenzhen/43/96(H3... 58.0 8e-07
gb|AF008684.1|AF008684 Influenza A virus (A/Beijing/353/89(H3... 58.0 8e-07
gb|AF008673.1|AF008673 Influenza A virus (A/Victoria/5/89(H3N... 58.0 8e-07
gb|AF008672.1|AF008672 Influenza A virus (A/Czechoslovakia/19... 58.0 8e-07
gb|AF008671.1|AF008671 Influenza A virus (A/England/88(H3N2))... 58.0 8e-07
gb|AF008670.1|AF008670 Influenza A virus (A/Beijing/4/89(H3N2... 58.0 8e-07
gb|AF008669.1|AF008669 Influenza A virus (A/Shanghai/1/89(H3N... 58.0 8e-07
gb|AF008668.1|AF008668 Influenza A virus (A/Shanghai/16/89(H3... 58.0 8e-07
gb|AF008667.1|AF008667 Influenza A virus (A/Guangdong/89(H3N2... 58.0 8e-07
gb|AF008666.1|AF008666 Influenza A virus (A/Guangdong/39/89(H... 58.0 8e-07
gb|AF008665.1|AF008665 Influenza A virus (A/Guizhou/54/89(H3N... 58.0 8e-07
gb|AF008664.1|AF008664 Influenza A virus (A/England/648/89(H3... 58.0 8e-07
gb|AF008663.1|AF008663 Influenza A virus (A/Sichuan/89(H3N2))... 58.0 8e-07
gb|AF008662.1|AF008662 Influenza A virus (A/Beijing/57/89(H3N... 58.0 8e-07
gb|AF008660.1|AF008660 Influenza A virus (A/Shanghai/24/90(H3... 58.0 8e-07
gb|AF008659.1|AF008659 Influenza A virus (A/Kasauli/206/91(H3... 58.0 8e-07
gb|AF008658.1|AF008658 Influenza A virus (A/Hong Kong/34/90(H... 58.0 8e-07
gb|AF008657.1|AF008657 Influenza A virus (A/Paris/1/92(H3N2))... 58.0 8e-07
gb|AF008656.1|AF008656 Influenza A virus (A/Perth/01/92(H3N2)... 58.0 8e-07
gb|U97740.1|U97740 Influenza A virus (A/Beijing/353/89(H3)) h... 58.0 8e-07
gb|L76036.1|FLAHMGA Influenza A virus (A/Beijing/353/1989(H3N... 58.0 8e-07
gb|L75991.1|FLASEG4Q Influenza A virus (A/Finland/371/1995(H3... 58.0 8e-07
gb|L75988.1|FLASEG4N Influenza A virus (A/Finland/296/1993(H3... 58.0 8e-07
gb|L75987.1|FLASEG4M Influenza A virus (A/Finland/295/1993(H3... 58.0 8e-07
gb|L75986.1|FLASEG4L Influenza A virus (A/Finland/292/1993(H3... 58.0 8e-07
gb|L75985.1|FLASEG4K Influenza A virus (A/Finland/278/1993(H3... 58.0 8e-07
gb|L75984.1|FLASEG4J Influenza A virus (A/Finland/276/1993(H3... 58.0 8e-07
gb|L75983.1|FLASEG4I Influenza A virus (A/Finland/274/1993(H3... 58.0 8e-07
gb|L75982.1|FLASEG4H Influenza A virus (A/Finland/263/1993(H3... 58.0 8e-07
gb|L75977.1|FLASEG4C Influenza A virus (A/Finland/144/1990(H3... 58.0 8e-07
gb|L75976.1|FLASEG4B Influenza A virus (A/Finland/133/1990(H3... 58.0 8e-07
gb|L75975.1|FLASEG4A Influenza A virus (A/Finland/110/1989(H3... 58.0 8e-07
gb|U48447.1|IAU48447 Influenza A virus (A/Hebei/19/1995(H3N2)... 58.0 8e-07
gb|U48446.1|IAU48446 Influenza A virus (A/Aichi/69/1994(H3N2)... 58.0 8e-07
gb|U48445.1|IAU48445 Influenza A virus (A/Sendai/c373/1995(H3... 58.0 8e-07
gb|U48444.1|IAU48444 Influenza A virus (A/Akita/1/1995(H3N2))... 58.0 8e-07
gb|U48442.1|IAU48442 Influenza A virus (A/Guandong/28/1994(H3... 58.0 8e-07
gb|U48441.1|IAU48441 Influenza A virus (A/Hebei/41/1994(H3N2)... 58.0 8e-07
gb|AY138515.1| Influenza A virus (A/zhejiang/10/98(H3N2)) hem... 58.0 8e-07
dbj|D00930.1|FLA1076HA Influenza A virus (A/Gs/HK/10/1976(H3)... 58.0 8e-07
dbj|D00929.1|FLA775HA Influenza A virus (A/DK/HK/7/1975(H3)) ... 58.0 8e-07
dbj|D43792.1|FLAHG Influenza A virus (A/sw/Obihiro/3/1993(H3N... 58.0 8e-07
dbj|D43791.1|FLAHF Influenza A virus (A/sw/Obihiro/2/1993(H3N... 58.0 8e-07
dbj|D43790.1|FLAHE Influenza A virus (A/sw/Obihiro/1/1993(H3N... 58.0 8e-07
dbj|D43789.1|FLAHD Influenza A virus (A/Hokkaido/2/1993(H3N2)... 58.0 8e-07
dbj|D43788.1|FLAHC Influenza A virus (A/Hokkaido/1/1993(H3N2)... 58.0 8e-07
dbj|D43787.1|FLAHB Influenza A virus (A/Hokkaido/1/1988(H3N2)... 58.0 8e-07
dbj|D43786.1|FLAHA Influenza A virus (A/Beijin/352/1989(H3N2)... 58.0 8e-07
dbj|D86469.1| Influenza A virus (A/SW/Obihiro/1/1994(H3N2)) g... 58.0 8e-07
gb|L18996.1|FLAGUHA1 Influenza A virus (A/Guangdong/39/1989(H... 58.0 8e-07
gb|L19004.1|FLAGUANGHA Influenza A virus (A/Guangdong/39/1989... 58.0 8e-07
gb|L18998.1|FLAGUAHA1 Influenza A virus (A/Guangdong/39/1989(... 58.0 8e-07
gb|L19001.1|FLAENGLHA Influenza A virus (A/England/427/1988(H... 58.0 8e-07
gb|L18997.1|FLAENGHA1 Influenza A virus (A/England/427/1988(H... 58.0 8e-07
gb|L18994.1|FLABEIHA1 Influenza A virus (A/Beijing/4/1989(H3N... 58.0 8e-07
gb|L19000.1|FLABAIJHA Influenza A virus (A/Beijing/4/1989(H3N... 58.0 8e-07
gb|L19002.1|FLAPHILHA Influenza A virus (A/Philippines/2/1982... 58.0 8e-07
gb|L19003.1|FLAMISSHA Influenza A virus (A/Mississippi/1/1985... 58.0 8e-07
gb|CY006587.1| Influenza A virus (A/New York/541/1998(H3N2)) ... 58.0 8e-07
gb|CY006475.1| Influenza A virus (A/New York/518/1998(H3N2)) ... 58.0 8e-07
gb|CY006347.1| Influenza A virus (A/Nanchang/58/93(H3N2)) seg... 58.0 8e-07
gb|CY006339.1| Influenza A virus (A/Nanchang/0058/94(H3N2)) s... 58.0 8e-07
gb|CY006323.1| Influenza A virus (A/Hong Kong/4/84(H3N2)) seg... 58.0 8e-07
gb|CY006315.1| Influenza A virus (A/Hong Kong/14/83(H3N2)) se... 58.0 8e-07
gb|M73775.1|FLAN2HAD Influenza A virus (A/swine/Ukkel/1/1984(... 58.0 8e-07
gb|M21648.1|FLAM686HA Influenza A virus (A/Mem/6/1986(H3N2)) ... 58.0 8e-07
gb|L19412.1|FLAHASHANZ Influenza A virus (A/Shanghai/11/1987/... 58.0 8e-07
gb|L19414.1|FLAHASHANX Influenza A virus (A/Shanghai/11/1987/... 58.0 8e-07
gb|L19415.1|FLAHASHANW Influenza A virus (A/Shanghai/11/1987/... 58.0 8e-07
gb|L19416.1|FLAHASHANV Influenza A virus (A/Shanghai/11/1987/... 58.0 8e-07
gb|K03338.1|FLAHAMN Influenza A virus (A/Qu/7/1970(H3N2)) hem... 58.0 8e-07
gb|J02132.1|FLAHALR Influenza A virus (A/Memphis/1/1971(H3N2)... 58.0 8e-07
gb|J02092.1|FLAHALE Influenza A virus (A/Bangkok/1/1979(H3N2)... 58.0 8e-07
gb|M57632.1|FLAHAD Influenza A virus (A/Equador/4/1986(H3N2))... 58.0 8e-07
gb|M57630.1|FLAHAB Influenza A virus (A/Alabama/1/1981(H3N2))... 58.0 8e-07
gb|M54895.1|FLADORNHA Influenza A virus (A/Udorn/307/1972(H3H... 58.0 8e-07
gb|L20119.1|FLAHAI1389 Influenza A/Singapore/13/89 original s... 58.0 8e-07
gb|U08859.1|IVU08859 Influenza A virus A/Philippines/2/82/BS ... 58.0 8e-07
gb|U08858.1|IVU08858 Influenza A virus A/Philippines/2/82 (H3... 58.0 8e-07
gb|L20118.1|FLAHAS1389 Influenza A/Singapore/13/89 from embry... 58.0 8e-07
gb|L20114.1|FLAHAS1289 Influenza A/Singapore/12/89 from embry... 58.0 8e-07
gb|L20103.1|FLAHAIN190 Influenza A virus (A/Indiana/01/1990(H... 58.0 8e-07
gb|L20104.1|FLAHAID190 Influenza A virus (A/Indiana/01/1990(H... 58.0 8e-07
gb|L20115.1|FLAHAI1289 Influenza A/Singapore/12/89 original s... 58.0 8e-07
gb|DQ241763.1| Influenza A virus (A/swine/Alberta/Biovet1/05(... 58.0 8e-07
gb|DQ241762.1| Influenza A virus (A/swine/Ontario/Biovet1/05(... 58.0 8e-07
gb|DQ241761.1| Influenza A virus (A/swine/Quebec/Biovet1/05(H... 58.0 8e-07

HenryN · Mar 28, 2008

Re: Homologous Recombination is Very Rare or Absent in Human Influenza A Virus

Here's another series

gb|EF626623.1| Influenza A virus (A/Texas/1/1977(H3N2)) segme... 50.1 1e-04
gb|CY020325.1| Influenza A virus (A/Memphis/16/1978(H3N2)) se... 50.1 1e-04
gb|CY012528.1| Influenza A virus (A/New York/705/1994(H3N2)) ... 50.1 1e-04
gb|CY012128.1| Influenza A virus (A/New York/758/1993(H3N2)) ... 50.1 1e-04
gb|CY011480.1| Influenza A virus (A/Memphis/2/1990(H3N2)) seg... 50.1 1e-04
gb|DQ508833.1| Influenza A virus (A/Beijing/353/1989(H3N2)) h... 50.1 1e-04
gb|CY003712.1| Influenza A virus (A/Hong Kong/14/92(H3N2)) se... 50.1 1e-04
gb|CY003064.1| Influenza A virus (A/Memphis/1/90(H3N2)) segme... 50.1 1e-04
gb|AY589660.1| Influenza A virus (A/Kyongbuk/320/2002(H3N2)) ... 50.1 1e-04
gb|AY589657.1| Influenza A virus (A/Incheon/260/2002(H3N2)) h... 50.1 1e-04
gb|AY589655.1| Influenza A virus (A/Daejeon/258/2002(H3N2)) h... 50.1 1e-04
gb|AY589652.1| Influenza A virus (A/Cheonnam/340/2002(H3N2)) ... 50.1 1e-04
gb|AY589651.1| Influenza A virus (A/Cheonnam/338/2002(H3N2)) ... 50.1 1e-04
gb|AY589650.1| Influenza A virus (A/Cheonnam/323/2002(H3N2)) ... 50.1 1e-04
gb|AY377540.1| Influenza A virus (A/Finland/205/92(H3N2)) hem... 50.1 1e-04
gb|AY377539.1| Influenza A virus (A/Finland/245/92(H3N2)) hem... 50.1 1e-04
gb|AY377538.1| Influenza A virus (A/Finland/190/92(H3N2)) hem... 50.1 1e-04
gb|AY377537.1| Influenza A virus (A/Finland/191/92(H3N2)) hem... 50.1 1e-04
gb|CY009308.1| Influenza A virus (A/Swine/Wisconsin/194/80(H3... 50.1 1e-04
gb|CY006843.1| Influenza A virus (A/Memphis/5/77(H3N2)) segme... 50.1 1e-04
gb|AY661174.1| Influenza A virus (A/Oslo/2352/93(H3N2)) hemag... 50.1 1e-04
gb|AY661169.1| Influenza A virus (A/Lyon/1803/93(H3N2)) hemag... 50.1 1e-04
gb|AY661167.1| Influenza A virus (A/Netherlands/399/93(H3N2))... 50.1 1e-04
gb|AY661165.1| Influenza A virus (A/Netherlands/440/93(H3N2))... 50.1 1e-04
gb|AY661162.1| Influenza A virus (A/Netherlands/357/93(H3N2))... 50.1 1e-04
gb|AY661157.1| Influenza A virus (A/Victoria/104/93(H3N2)) he... 50.1 1e-04
gb|AY661150.1| Influenza A virus (A/Enschede/5458/93(H3N2)) h... 50.1 1e-04
gb|AY661146.1| Influenza A virus (A/Netherlands/165/93 (H3N2)... 50.1 1e-04
gb|AY661143.1| Influenza A virus (A/Madrid/G101/93(H3N2)) hem... 50.1 1e-04
gb|AY661142.1| Influenza A virus (A/Madrid/G116/93(H3N2)) hem... 50.1 1e-04
gb|AY661137.1| Influenza A virus (A/Stockholm/13/92(H3N2)) he... 50.1 1e-04
gb|AY661134.1| Influenza A virus (A/Umea/1982/92(H3N2)) hemag... 50.1 1e-04
gb|AY661132.1| Influenza A virus (A/Paris/287/93(H3N2)) hemag... 50.1 1e-04
gb|AY661131.1| Influenza A virus (A/Netherlands/3/93(H3N2)) h... 50.1 1e-04
gb|AY661130.1| Influenza A virus (A/Beijing/32/92(H3N2)) hema... 50.1 1e-04
gb|AY661128.1| Influenza A virus (A/South_Australia/27/92(H3N... 50.1 1e-04
gb|AY661127.1| Influenza A virus (A/South_Australia/23/92(H3N... 50.1 1e-04
gb|AY661126.1| Influenza A virus (A/South_Australia/8/92(H3N2... 50.1 1e-04
gb|AY661125.1| Influenza A virus (A/Netherlands/938/92(H3N2))... 50.1 1e-04
gb|AY661124.1| Influenza A virus (A/Houston/56798/92(H3N2)) h... 50.1 1e-04
gb|AY661123.1| Influenza A virus (A/Houston/56941/92(H3N2)) h... 50.1 1e-04
gb|AY661122.1| Influenza A virus (A/Houston/56829/92(H3N2)) h... 50.1 1e-04
gb|AY661121.1| Influenza A virus (A/Stockholm/8/92(H3N2)) hem... 50.1 1e-04
gb|AY661120.1| Influenza A virus (A/Stockholm/7/92(H3N2)) hem... 50.1 1e-04
gb|AY661119.1| Influenza A virus (A/Stockholm/20/91(H3N2)) he... 50.1 1e-04
gb|AY661118.1| Influenza A virus (A/Madrid/OV31/92(H3N2)) hem... 50.1 1e-04
gb|AY661117.1| Influenza A virus (A/Madrid/G58/92(H3N2)) hema... 50.1 1e-04
gb|AY661116.1| Influenza A virus (A/Tilburg/5957/92(H3N2)) he... 50.1 1e-04
gb|AY661115.1| Influenza A virus (A/Amsterdam/4112/92(H3N2)) ... 50.1 1e-04
gb|AY661114.1| Influenza A virus (A/Nijmegen/3129/92(H3N2)) h... 50.1 1e-04
gb|AY661113.1| Influenza A virus (A/Nijmegen/3126/92(H3N2)) h... 50.1 1e-04
gb|AY661112.1| Influenza A virus (A/Rotterdam/100540/92(H3N2)... 50.1 1e-04
gb|AY661111.1| Influenza A virus (A/Geneva/5113/92(H3N2)) hem... 50.1 1e-04
gb|AY661110.1| Influenza A virus (A/Finland/220/92(H3N2)) hem... 50.1 1e-04
gb|AY661109.1| Influenza A virus (A/Finland/218/92(H3N2)) hem... 50.1 1e-04
gb|AY661108.1| Influenza A virus (A/Netherlands/823/92 (H3N2)... 50.1 1e-04
gb|AY661107.1| Influenza A virus (A/Lyon/chu24222/91(H3N2)) h... 50.1 1e-04
gb|AY661106.1| Influenza A virus (A/Lyon/chu24103/91(H3N2)) h... 50.1 1e-04
gb|AY661105.1| Influenza A virus (A/Lyon/chu23672/91(H3N2)) h... 50.1 1e-04
gb|AY661104.1| Influenza A virus (A/Lyon/ons1337/91(H3N2)) he... 50.1 1e-04
gb|AY661103.1| Influenza A virus (A/Lyon/ons1276/91(H3N2)) he... 50.1 1e-04
gb|AY661102.1| Influenza A virus (A/Lyon/ons1373/91(H3N2)) he... 50.1 1e-04
gb|AY661101.1| Influenza A virus (A/Lyon/ons1594/91(H3N2)) he... 50.1 1e-04
gb|AY661100.1| Influenza A virus (A/Lyon/ons1189/91(H3N2)) he... 50.1 1e-04
gb|AY661099.1| Influenza A virus (A/Lyon/1182/91(H3N2)) hemag... 50.1 1e-04
gb|AY661098.1| Influenza A virus (A/Lyon/1149/91(H3N2)) hemag... 50.1 1e-04
gb|AY661097.1| Influenza A virus (A/Netherlands/935/92(H3N2))... 50.1 1e-04
gb|AY661096.1| Influenza A virus (A/Enschede/1285/92(H3N2)) h... 50.1 1e-04
gb|AY661095.1| Influenza A virus (A/Paris/614/92(H3N2)) hemag... 50.1 1e-04
gb|AY661094.1| Influenza A virus (A/Paris/597/92(H3N2)) hemag... 50.1 1e-04
gb|AY661093.1| Influenza A virus (A/Paris/583/92(H3N2)) hemag... 50.1 1e-04
gb|AY661092.1| Influenza A virus (A/Paris/564/92(H3N2)) hemag... 50.1 1e-04
gb|AY661091.1| Influenza A virus (A/Paris/548/92(H3N2)) hemag... 50.1 1e-04
gb|AY661090.1| Influenza A virus (A/Paris/512/92(H3N2)) hemag... 50.1 1e-04
gb|AY661089.1| Influenza A virus (A/Paris/490/92(H3N2)) hemag... 50.1 1e-04
gb|AY661088.1| Influenza A virus (A/Paris/467/92(H3N2)) hemag... 50.1 1e-04
gb|AY661087.1| Influenza A virus (A/Paris/457/92(H3N2)) hemag... 50.1 1e-04
gb|AY661086.1| Influenza A virus (A/Paris/424/92(H3N2)) hemag... 50.1 1e-04
gb|AY661085.1| Influenza A virus (A/Paris/417/92(H3N2)) hemag... 50.1 1e-04
gb|AY661084.1| Influenza A virus (A/Paris/407/92(H3N2)) hemag... 50.1 1e-04
gb|AY661083.1| Influenza A virus (A/Paris/325/92(H3N2)) hemag... 50.1 1e-04
gb|AY661082.1| Influenza A virus (A/Paris/320/92(H3N2)) hemag... 50.1 1e-04
gb|AY661081.1| Influenza A virus (A/England/261/91(H3N2)) hem... 50.1 1e-04
gb|AY661080.1| Influenza A virus (A/Netherlands/819/92(H3N2))... 50.1 1e-04
gb|AY661079.1| Influenza A virus (A/Madrid/G12/91(H3N2)) hema... 50.1 1e-04
gb|AY661078.1| Influenza A virus (A/Netherlands/816/91(H3N2))... 50.1 1e-04
gb|AY661077.1| Influenza A virus (A/Geneva/6447/91(H3N2)) hem... 50.1 1e-04
gb|AY661076.1| Influenza A virus (A/Canberra/1/91(H3N2)) hema... 50.1 1e-04
gb|AY661075.1| Influenza A virus (A/England/260/91(H3N2)) hem... 50.1 1e-04
gb|AY661074.1| Influenza A virus (A/Shanghai/24/90(H3N2)) hem... 50.1 1e-04
gb|AY661073.1| Influenza A virus (A/Victoria/2/90(H3N2)) hema... 50.1 1e-04
gb|AY661072.1| Influenza A virus (A/Seoul/1/90(H3N2)) hemaggl... 50.1 1e-04
gb|AY661071.1| Influenza A virus (A/Atlanta/211/89(H3N2)) hem... 50.1 1e-04
gb|AY661070.1| Influenza A virus (A/Memphis/5/90(H3N2)) hemag... 50.1 1e-04
gb|AY661069.1| Influenza A virus (A/Memphis/2/90(H3N2)) hemag... 50.1 1e-04
gb|AY661068.1| Influenza A virus (A/Netherlands/650/89 (H3N2)... 50.1 1e-04
gb|AY661067.1| Influenza A virus (A/Netherlands/620/89 (H3N2)... 50.1 1e-04
gb|AY661066.1| Influenza A virus (A/Beijing/353/89(H3N2)) hem... 50.1 1e-04
gb|AY661064.1| Influenza A virus (A/Singapore/53/89(H3N2)) he... 50.1 1e-04
gb|AY661063.1| Influenza A virus (A/Singapore/40/89(H3N2)) he... 50.1 1e-04
gb|AY661062.1| Influenza A virus (A/Singapore/36/89(H3N2)) he... 50.1 1e-04
gb|AY661061.1| Influenza A virus (A/Singapore/35/89(H3N2)) he... 50.1 1e-04
gb|AY661060.1| Influenza A virus (A/Singapore/34/89(H3N2)) he... 50.1 1e-04
gb|AY661059.1| Influenza A virus (A/Hongkong/1/89(H3N2)) hema... 50.1 1e-04
gb|AY661058.1| Influenza A virus (A/Wellington/5/89(H3N2)) he... 50.1 1e-04
gb|AY661057.1| Influenza A virus (A/Geneva/5007/89(H3N2)) hem... 50.1 1e-04
gb|AY661054.1| Influenza A virus (A/Netherlands/450/88(H3N2))... 50.1 1e-04
gb|AY661053.1| Influenza A virus (A/Colorado/2/86(H3N2)) hema... 50.1 1e-04
gb|AY661048.1| Influenza A virus (A/Netherlands/241/82(H3N2))... 50.1 1e-04
gb|AY661029.1| Influenza A virus (A/Netherlands/738/89(H3N2))... 50.1 1e-04
gb|CY008740.1| Influenza A virus (A/Memphis/7/90(H3N2)) segme... 50.1 1e-04
gb|AF450246.1| Influenza A virus (A/Texas/1/77(H3N2)) hemaggl... 50.1 1e-04
dbj|D10162.1|FLAG89HA Influenza A virus (A/Guizhou/54/89(H3N2... 50.1 1e-04
gb|AY262744.1| Influenza A virus (A/Finland/246/92(H3N2)) hae... 50.1 1e-04
emb|Z46413.1| Influenza A virus (A/Scotland/142/1993(H3N2)) m... 50.1 1e-04
emb|Z46402.1| Influenza A virus (A/England/471/1993(H3N2)) mR... 50.1 1e-04
emb|Z46398.1| Influenza A virus (A/England/289/1993(H3N2)) mR... 50.1 1e-04
emb|Z46391.1| Influenza A virus (A/Beijing/353/1989(H3N2)) mR... 50.1 1e-04
emb|Z46410.1| Influenza A virus (A/Hong Kong/23/1992(H3N2)) m... 50.1 1e-04
emb|Z46409.1| Influenza A virus (A/Hong Kong/34/1990(H3N2)) m... 50.1 1e-04
emb|Z46392.1| Influenza A virus (A/Beijing/32/1992(H3N2)) mRN... 50.1 1e-04
emb|Z46412.1| Influenza A virus (A/Scotland/2/1993(H3N2)) mRN... 50.1 1e-04
emb|Z46393.1| Influenza A virus (A/England/1/1993(H3N2)) mRNA... 50.1 1e-04
emb|X75800.1| Influenza A virus (Beijing/352/1989,(highgrowth... 50.1 1e-04
emb|X05907.1| Influenza A virus (A/England/321/1977(H3N2)) ge... 50.1 1e-04
gb|AF386612.1|AF386612 Influenza A virus (A/Pusan/10/98(H3N2)... 50.1 1e-04
gb|AF386611.1|AF386611 Influenza A virus (A/Seoul/47/91(H3N2)... 50.1 1e-04
gb|AF386610.1|AF386610 Influenza A virus (A/Seoul/46/91(H3N2)... 50.1 1e-04
gb|AF386609.1|AF386609 Influenza A virus (A/Seoul/44/91(H3N2)... 50.1 1e-04
gb|AF386608.1|AF386608 Influenza A virus (A/Seoul/23/91(H3N2)... 50.1 1e-04
gb|AF386607.1|AF386607 Influenza A virus (A/Seoul/22/90(H3N2)... 50.1 1e-04
gb|AF386606.1|AF386606 Influenza A virus (A/Seoul/50/91(H3N2)... 50.1 1e-04
gb|DQ336015.1| Influenza A virus (A/Brazil/006/00(H3N2)) hema... 50.1 1e-04
gb|DQ336014.1| Influenza A virus (A/Brazil/009/00(H3N2)) hema... 50.1 1e-04
gb|DQ336013.1| Influenza A virus (A/Brazil/010/00(H3N2)) hema... 50.1 1e-04
gb|DQ336012.1| Influenza A virus (A/Brazil/015/00(H3N2)) hema... 50.1 1e-04
gb|DQ336011.1| Influenza A virus (A/Brazil/008/00(H3N2)) hema... 50.1 1e-04
gb|CY008123.1| Influenza A virus (A/Memphis/4/77(H3N2)) segme... 50.1 1e-04
gb|CY008115.1| Influenza A virus (A/Memphis/2/77(H3N2)) segme... 50.1 1e-04
gb|AF180564.1| Influenza A virus (A/Tianjing/33/92(H3N2)) hem... 50.1 1e-04
gb|AF204238.1|AF204238 Influenza A virus (A/England/427/88(H3... 50.1 1e-04
dbj|D30663.1|FLASPH2 Influenza A virus (A/Washington/15/91(H3... 50.1 1e-04
dbj|D30662.1|FLASPH1 Influenza A virus (A/Brazil/02/91(H3N2))... 50.1 1e-04
dbj|D30664.1|FLAH13 Influenza A virus (A/Tianjin/33/92(H3N2))... 50.1 1e-04
dbj|D30669.1|FLAH3N2HA1 Influenza A virus (A/Kitakyushu/159/9... 50.1 1e-04
gb|AF008857.1|AF008857 Influenza A virus (A/Pennsylvania/9/93... 50.1 1e-04
gb|AF008823.1|AF008823 Influenza A virus (A/Kitakyushu/93(H3N... 50.1 1e-04
gb|AF008817.1|AF008817 Influenza A virus (A/California/271/92... 50.1 1e-04
gb|AF008816.1|AF008816 Influenza A virus (A/Qingdao/53/92(H3N... 50.1 1e-04
gb|AF008815.1|AF008815 Influenza A virus (A/Hawaii/3/92(H3N2)... 50.1 1e-04
gb|AF008814.1|AF008814 Influenza A virus (A/Alaska/9/92(H3N2)... 50.1 1e-04
gb|AF008813.1|AF008813 Influenza A virus (A/Beijing/46/92(H3N... 50.1 1e-04
gb|AF008812.1|AF008812 Influenza A virus (A/Beijing/32/92(H3N... 50.1 1e-04
gb|AF008811.1|AF008811 Influenza A virus (A/Victoria/1/93(H3N... 50.1 1e-04
gb|AF008810.1|AF008810 Influenza A virus (A/Indonesia/3109/91... 50.1 1e-04
gb|AF008808.1|AF008808 Influenza A virus (A/Guangdong/4/93(H3... 50.1 1e-04
gb|AF008807.1|AF008807 Influenza A virus (A/Ningxia/10/93(H3N... 50.1 1e-04
gb|AF008800.1|AF008800 Influenza A virus (A/Russia/46967/94(H... 50.1 1e-04
gb|AF008799.1|AF008799 Influenza A virus (A/France/1109/94(H3... 50.1 1e-04
gb|AF008798.1|AF008798 Influenza A virus (A/New_York/64/93(H3... 50.1 1e-04
gb|AF008797.1|AF008797 Influenza A virus (A/New_York/63/93(H3... 50.1 1e-04
dbj|D49967.1|FLAH3N2I Influenza A virus (A/Shiga/2/91(H3N2)) ... 50.1 1e-04
dbj|D49966.1|FLAH3N2H Influenza A virus (A/Bangkok/144/90(H3N... 50.1 1e-04
dbj|D49965.1|FLAH3N2G Influenza A virus (A/Bangkok/139/90(H3N... 50.1 1e-04
dbj|D49964.1|FLAH3N2F Influenza A virus (A/OMS/7026/89(H3N2))... 50.1 1e-04
dbj|D49963.1|FLAH3N2E Influenza A virus (A/Guizhou/54/89(H3N2... 50.1 1e-04
dbj|D49962.1|FLAH3N2D Influenza A virus (A/Bangkok/235/89(H3N... 50.1 1e-04
dbj|D49961.1|FLAH3N2C Influenza A virus (A/Beijing/352/89(H3N... 50.1 1e-04
dbj|D49960.1|FLAH3N2B Influenza A virus (A/Hokkaido/20/89(H3N... 50.1 1e-04
gb|CY007611.1| Influenza A virus (A/Memphis/19/78(H3N2)) segm... 50.1 1e-04
dbj|AB043706.1| Influenza A virus (A/Chiba/54/92(H3N2)) HA ge... 50.1 1e-04
dbj|AB043705.1| Influenza A virus (A/Kamata/14/91(H3N2)) HA g... 50.1 1e-04
gb|L20102.1|FLAHAHI191 Influenza A virus (A/Hawaii/01/1991 MD... 50.1 1e-04
gb|CY006739.1| Influenza A virus (A/Memphis/3/77(H3N2)) segme... 50.1 1e-04
gb|CY006731.1| Influenza A virus (A/Memphis/1/77(H3N2)) segme... 50.1 1e-04
gb|CY006707.1| Influenza A virus (A/Memphis/18/78(H3N2)) segm... 50.1 1e-04
gb|CY006699.1| Influenza A virus (A/Memphis/12/78(H3N2)) segm... 50.1 1e-04
gb|CY006691.1| Influenza A virus (A/Memphis/2/78(H3N2)) segme... 50.1 1e-04
gb|U77840.1|IAU77840 Influenza A virus (A/Tottori/872AM2AL3/1... 50.1 1e-04
gb|U77839.1|IAU77839 Influenza A virus (A/Tottori/849AM2AL3/1... 50.1 1e-04
gb|U77838.1|IAU77838 Influenza A virus (A/Tottori/872AM1AL3/1... 50.1 1e-04
gb|U77837.1|IAU77837 Influenza A virus (A/Tottori/849AM1AL3/1... 50.1 1e-04
gb|U77836.1|IAU77836 Influenza A virus (A/Tottori/872AM4/1994... 50.1 1e-04
gb|U77835.1|IAU77835 Influenza A virus (A/Tottori/849AM4/1994... 50.1 1e-04
gb|U77834.1|IAU77834 Influenza A virus (A/Tottori/872AM2/1994... 50.1 1e-04
gb|U77833.1|IAU77833 Influenza A virus (A/Tottori/849AM2/1994... 50.1 1e-04
gb|U77832.1|IAU77832 Influenza A virus (A/Tottori/872K4/1994(... 50.1 1e-04
gb|U77831.1|IAU77831 Influenza A virus (A/Tottori/849K4/1994)... 50.1 1e-04
gb|AF008704.1|AF008704 Influenza A virus (A/Russia/31/93(H3N2... 50.1 1e-04
gb|AF008703.1|AF008703 Influenza A virus (A/Taiwan/1143/91(H3... 50.1 1e-04
gb|AF008702.1|AF008702 Influenza A virus (A/Paris/80/91(H3N2)... 50.1 1e-04
gb|AF008701.1|AF008701 Influenza A virus (A/Spain/118/93(H3N2... 50.1 1e-04
gb|AF008700.1|AF008700 Influenza A virus (A/Victoria/29/92(H3... 50.1 1e-04
gb|AF008699.1|AF008699 Influenza A virus (A/Wellington/66/92(... 50.1 1e-04
gb|AF008698.1|AF008698 Influenza A virus (A/Beijing/47/92(H3N... 50.1 1e-04
gb|AF008697.1|AF008697 Influenza A virus (A/Victoria/68/92(H3... 50.1 1e-04
gb|AF008696.1|AF008696 Influenza A virus (A/South_Australia/6... 50.1 1e-04
gb|AF008695.1|AF008695 Influenza A virus (A/Singapore/8/92(H3... 50.1 1e-04
gb|AF008694.1|AF008694 Influenza A virus (A/Indonesia/3946/92... 50.1 1e-04
gb|AF008692.1|AF008692 Influenza A virus (A/Umea/1/92(H3N2)) ... 50.1 1e-04
gb|AF008691.1|AF008691 Influenza A virus (A/Kasauli/149/92(H3... 50.1 1e-04
gb|AF008690.1|AF008690 Influenza A virus (A/India/237/93(H3N2... 50.1 1e-04
gb|AF008689.1|AF008689 Influenza A virus (A/India/236/93(H3N2... 50.1 1e-04
gb|AF008688.1|AF008688 Influenza A virus (A/England/261/91(H3... 50.1 1e-04
gb|AF008687.1|AF008687 Influenza A virus (A/Brazil/91(H3N2)) ... 50.1 1e-04
gb|AF008686.1|AF008686 Influenza A virus (A/Shanghai/6/90(H3N... 50.1 1e-04
gb|AF008685.1|AF008685 Influenza A virus (A/Hawaii/1/91(H3N2)... 50.1 1e-04
gb|AF008684.1|AF008684 Influenza A virus (A/Beijing/353/89(H3... 50.1 1e-04
gb|AF008683.1|AF008683 Influenza A virus (A/Puerto_Rico/1/90(... 50.1 1e-04
gb|AF008682.1|AF008682 Influenza A virus (A/Shiga/2/91(H3N2))... 50.1 1e-04
gb|AF008681.1|AF008681 Influenza A virus (A/Indiana/3/91(H3N2... 50.1 1e-04
gb|AF008680.1|AF008680 Influenza A virus (A/South_Australia/3... 50.1 1e-04
gb|AF008679.1|AF008679 Influenza A virus (A/Pennsylvania/09/9... 50.1 1e-04
gb|AF008678.1|AF008678 Influenza A virus (A/Seoul/45/91(H3N2)... 50.1 1e-04
gb|AF008677.1|AF008677 Influenza A virus (A/Sophia/155/93(H3N... 50.1 1e-04
gb|AF008676.1|AF008676 Influenza A virus (A/Washington/15/91(... 50.1 1e-04
gb|AF008675.1|AF008675 Influenza A virus (A/South_Dakota/1/91... 50.1 1e-04
gb|AF008674.1|AF008674 Influenza A virus (A/Mexico/3255/94(H3... 50.1 1e-04
gb|AF008672.1|AF008672 Influenza A virus (A/Czechoslovakia/19... 50.1 1e-04
gb|AF008671.1|AF008671 Influenza A virus (A/England/88(H3N2))... 50.1 1e-04
gb|AF008670.1|AF008670 Influenza A virus (A/Beijing/4/89(H3N2... 50.1 1e-04
gb|AF008669.1|AF008669 Influenza A virus (A/Shanghai/1/89(H3N... 50.1 1e-04
gb|AF008668.1|AF008668 Influenza A virus (A/Shanghai/16/89(H3... 50.1 1e-04
gb|AF008667.1|AF008667 Influenza A virus (A/Guangdong/89(H3N2... 50.1 1e-04
gb|AF008666.1|AF008666 Influenza A virus (A/Guangdong/39/89(H... 50.1 1e-04
gb|AF008665.1|AF008665 Influenza A virus (A/Guizhou/54/89(H3N... 50.1 1e-04
gb|AF008664.1|AF008664 Influenza A virus (A/England/648/89(H3... 50.1 1e-04
gb|AF008663.1|AF008663 Influenza A virus (A/Sichuan/89(H3N2))... 50.1 1e-04
gb|AF008662.1|AF008662 Influenza A virus (A/Beijing/57/89(H3N... 50.1 1e-04
gb|AF008660.1|AF008660 Influenza A virus (A/Shanghai/24/90(H3... 50.1 1e-04
gb|AF008659.1|AF008659 Influenza A virus (A/Kasauli/206/91(H3... 50.1 1e-04
gb|AF008658.1|AF008658 Influenza A virus (A/Hong Kong/34/90(H... 50.1 1e-04
gb|AF008657.1|AF008657 Influenza A virus (A/Paris/1/92(H3N2))... 50.1 1e-04
gb|AF008656.1|AF008656 Influenza A virus (A/Perth/01/92(H3N2)... 50.1 1e-04
gb|U97740.1|U97740 Influenza A virus (A/Beijing/353/89(H3)) h... 50.1 1e-04
gb|L76035.1|FLAHMG Influenza A virus (A/Beijing/32/1992(H3N2)... 50.1 1e-04
gb|L76036.1|FLAHMGA Influenza A virus (A/Beijing/353/1989(H3N... 50.1 1e-04
gb|L75980.1|FLASEG4F Influenza A virus (A/Finland/239/1992(H3... 50.1 1e-04
gb|L75979.1|FLASEG4E Influenza A virus (A/Finland/211/1992(H3... 50.1 1e-04
gb|L75978.1|FLASEG4D Influenza A virus (A/Finland/189/1991(H3... 50.1 1e-04
gb|L75977.1|FLASEG4C Influenza A virus (A/Finland/144/1990(H3... 50.1 1e-04
gb|L75976.1|FLASEG4B Influenza A virus (A/Finland/133/1990(H3... 50.1 1e-04
gb|L75975.1|FLASEG4A Influenza A virus (A/Finland/110/1989(H3... 50.1 1e-04
gb|U26830.1|IAU26830 Influenza A virus (A/Beijing/32/1992(H3N... 50.1 1e-04
dbj|D43792.1|FLAHG Influenza A virus (A/sw/Obihiro/3/1993(H3N... 50.1 1e-04
dbj|D43786.1|FLAHA Influenza A virus (A/Beijin/352/1989(H3N2)... 50.1 1e-04
dbj|D86469.1| Influenza A virus (A/SW/Obihiro/1/1994(H3N2)) g... 50.1 1e-04
gb|L18996.1|FLAGUHA1 Influenza A virus (A/Guangdong/39/1989(H... 50.1 1e-04
gb|L19004.1|FLAGUANGHA Influenza A virus (A/Guangdong/39/1989... 50.1 1e-04
gb|L18998.1|FLAGUAHA1 Influenza A virus (A/Guangdong/39/1989(... 50.1 1e-04
gb|L19001.1|FLAENGLHA Influenza A virus (A/England/427/1988(H... 50.1 1e-04
gb|L18997.1|FLAENGHA1 Influenza A virus (A/England/427/1988(H... 50.1 1e-04
gb|L18994.1|FLABEIHA1 Influenza A virus (A/Beijing/4/1989(H3N... 50.1 1e-04
gb|L19000.1|FLABAIJHA Influenza A virus (A/Beijing/4/1989(H3N... 50.1 1e-04
gb|M57644.1|FLAHAEW Influenza A virus (A/Wyoming/3/1987(H3N2)... 50.1 1e-04
gb|L20119.1|FLAHAI1389 Influenza A/Singapore/13/89 original s... 50.1 1e-04
gb|L20105.1|FLAHASD190 Influenza A virus (A/South Dakota/01/1... 50.1 1e-04
gb|L20118.1|FLAHAS1389 Influenza A/Singapore/13/89 from embry... 50.1 1e-04
gb|L20114.1|FLAHAS1289 Influenza A/Singapore/12/89 from embry... 50.1 1e-04
gb|L20103.1|FLAHAIN190 Influenza A virus (A/Indiana/01/1990(H... 50.1 1e-04
gb|L20104.1|FLAHAID190 Influenza A virus (A/Indiana/01/1990(H... 50.1 1e-04
gb|L20101.1|FLAHAHW191 Influenza A virus (A/Hawaii/01/1991(H3... 50.1 1e-04

HenryN · Mar 28, 2008

Re: Homologous Recombination is Very Rare or Absent in Human Influenza A Virus

Here's a shorter travel log for a subset (these sequences are from the 1980's)

gb|CY010756.1| Influenza A virus (A/Memphis/8/1988(H3N2)) seg... 83.8 3e-14
gb|CY003544.1| Influenza A virus (A/Hong Kong/7/87(H3N2)) seg... 83.8 3e-14
gb|CY003512.1| Influenza A virus (A/Hong Kong/2/88(H3N2)) seg... 83.8 3e-14
gb|AY589660.1| Influenza A virus (A/Kyongbuk/320/2002(H3N2)) ... 83.8 3e-14
gb|AY589657.1| Influenza A virus (A/Incheon/260/2002(H3N2)) h... 83.8 3e-14
gb|AY589655.1| Influenza A virus (A/Daejeon/258/2002(H3N2)) h... 83.8 3e-14
gb|AY661065.1| Influenza A virus (A/Victoria/1/89(H3N2)) hema... 83.8 3e-14
gb|AY661056.1| Influenza A virus (A/Stockholm/12/88(H3N2)) he... 83.8 3e-14
gb|CY008724.1| Influenza A virus (A/Memphis/5/88(H3N2)) segme... 83.8 3e-14
gb|CY008732.1| Influenza A virus (A/Memphis/15/88(H3N2)) segm... 83.8 3e-14
dbj|D10161.1|FLAS87HA Influenza A virus (A/Sichuan/02/87(H3N2... 83.8 3e-14
gb|AF008907.1|AF008907 Influenza A virus (A/Baylor4B/Texas/39... 83.8 3e-14
gb|AF386604.1|AF386604 Influenza A virus (A/Seoul/11/88(H3N2)... 83.8 3e-14
dbj|D21173.1|FLAHAH2 Influenza A virus (A/Sichuan/2/87(H3N2))... 83.8 3e-14
gb|AF008890.1|AF008890 Influenza A virus (A/Colorado/2/(H3N2)... 83.8 3e-14
gb|AF008889.1|AF008889 Influenza A virus (A/Guizhou/1/(H3N2))... 83.8 3e-14
gb|AF008888.1|AF008888 Influenza A virus (A/Victoria/7/(H3N2)... 83.8 3e-14
gb|AF008887.1|AF008887 Influenza A virus (A/Qingdao/10/(H3N2)... 83.8 3e-14
gb|AF008886.1|AF008886 Influenza A virus (A/Shanghai/11/(H3N2... 83.8 3e-14
gb|AF008885.1|AF008885 Influenza A virus (A/Los_Angeles/(H3N2... 83.8 3e-14
gb|AF008884.1|AF008884 Influenza A virus (A/Sichuan/2/(H3N2))... 83.8 3e-14
gb|AF008883.1|AF008883 Influenza A virus (A/Guangdong/9/(H3N2... 83.8 3e-14
gb|AF008882.1|AF008882 Influenza A virus (A/Sydney/1/(H3N2)) ... 83.8 3e-14
gb|AF008881.1|AF008881 Influenza A virus (A/Kobe/768/88(H3N2)... 83.8 3e-14
gb|AF008880.1|AF008880 Influenza A virus (A/Chiba/38/88(H3N2)... 83.8 3e-14
dbj|D49959.1|FLAH3N2 Influenza A virus (A/Sichuan/02/87(H3N2)... 83.8 3e-14
gb|CY003352.1| Influenza A virus (A/Memphis/13/88(H3N2)) segm... 83.8 3e-14
gb|AF008703.1|AF008703 Influenza A virus (A/Taiwan/1143/91(H3... 83.8 3e-14
gb|L19412.1|FLAHASHANZ Influenza A virus (A/Shanghai/11/1987/... 83.8 3e-14
gb|L19413.1|FLAHASHANY Influenza A virus (A/Shanghai/11/1987/... 83.8 3e-14
gb|L19414.1|FLAHASHANX Influenza A virus (A/Shanghai/11/1987/... 83.8 3e-14
gb|L19415.1|FLAHASHANW Influenza A virus (A/Shanghai/11/1987/... 83.8 3e-14
gb|L19416.1|FLAHASHANV Influenza A virus (A/Shanghai/11/1987/... 83.8 3e-14

HenryN · Mar 28, 2008

Re: Homologous Recombination is Very Rare or Absent in Human Influenza A Virus

niman said:
Here's a shorter travel log for a subset (these sequences are from the 1980's)

gb|CY010756.1| Influenza A virus (A/Memphis/8/1988(H3N2)) seg... 83.8 3e-14
gb|CY003544.1| Influenza A virus (A/Hong Kong/7/87(H3N2)) seg... 83.8 3e-14
gb|CY003512.1| Influenza A virus (A/Hong Kong/2/88(H3N2)) seg... 83.8 3e-14
gb|AY589660.1| Influenza A virus (A/Kyongbuk/320/2002(H3N2)) ... 83.8 3e-14
gb|AY589657.1| Influenza A virus (A/Incheon/260/2002(H3N2)) h... 83.8 3e-14
gb|AY589655.1| Influenza A virus (A/Daejeon/258/2002(H3N2)) h... 83.8 3e-14
gb|AY661065.1| Influenza A virus (A/Victoria/1/89(H3N2)) hema... 83.8 3e-14
gb|AY661056.1| Influenza A virus (A/Stockholm/12/88(H3N2)) he... 83.8 3e-14
gb|CY008724.1| Influenza A virus (A/Memphis/5/88(H3N2)) segme... 83.8 3e-14
gb|CY008732.1| Influenza A virus (A/Memphis/15/88(H3N2)) segm... 83.8 3e-14
dbj|D10161.1|FLAS87HA Influenza A virus (A/Sichuan/02/87(H3N2... 83.8 3e-14
gb|AF008907.1|AF008907 Influenza A virus (A/Baylor4B/Texas/39... 83.8 3e-14
gb|AF386604.1|AF386604 Influenza A virus (A/Seoul/11/88(H3N2)... 83.8 3e-14
dbj|D21173.1|FLAHAH2 Influenza A virus (A/Sichuan/2/87(H3N2))... 83.8 3e-14
gb|AF008890.1|AF008890 Influenza A virus (A/Colorado/2/(H3N2)... 83.8 3e-14
gb|AF008889.1|AF008889 Influenza A virus (A/Guizhou/1/(H3N2))... 83.8 3e-14
gb|AF008888.1|AF008888 Influenza A virus (A/Victoria/7/(H3N2)... 83.8 3e-14
gb|AF008887.1|AF008887 Influenza A virus (A/Qingdao/10/(H3N2)... 83.8 3e-14
gb|AF008886.1|AF008886 Influenza A virus (A/Shanghai/11/(H3N2... 83.8 3e-14
gb|AF008885.1|AF008885 Influenza A virus (A/Los_Angeles/(H3N2... 83.8 3e-14
gb|AF008884.1|AF008884 Influenza A virus (A/Sichuan/2/(H3N2))... 83.8 3e-14
gb|AF008883.1|AF008883 Influenza A virus (A/Guangdong/9/(H3N2... 83.8 3e-14
gb|AF008882.1|AF008882 Influenza A virus (A/Sydney/1/(H3N2)) ... 83.8 3e-14
gb|AF008881.1|AF008881 Influenza A virus (A/Kobe/768/88(H3N2)... 83.8 3e-14
gb|AF008880.1|AF008880 Influenza A virus (A/Chiba/38/88(H3N2)... 83.8 3e-14
dbj|D49959.1|FLAH3N2 Influenza A virus (A/Sichuan/02/87(H3N2)... 83.8 3e-14
gb|CY003352.1| Influenza A virus (A/Memphis/13/88(H3N2)) segm... 83.8 3e-14
gb|AF008703.1|AF008703 Influenza A virus (A/Taiwan/1143/91(H3... 83.8 3e-14
gb|L19412.1|FLAHASHANZ Influenza A virus (A/Shanghai/11/1987/... 83.8 3e-14
gb|L19413.1|FLAHASHANY Influenza A virus (A/Shanghai/11/1987/... 83.8 3e-14
gb|L19414.1|FLAHASHANX Influenza A virus (A/Shanghai/11/1987/... 83.8 3e-14
gb|L19415.1|FLAHASHANW Influenza A virus (A/Shanghai/11/1987/... 83.8 3e-14
gb|L19416.1|FLAHASHANV Influenza A virus (A/Shanghai/11/1987/... 83.8 3e-14

The above travel log identifies a small portion of H3 that was widely circulating in 1987 and 1988, but they disappeared from the database until it reapeared in three of the six recombinants in Korea. The finding that regions of the 2002 H3 genes keep appearing in isolates from a decade earlier isn't a coincidence, due to lab contamination, or due to random mutations. These sequences arrise through multiple recombination events, which creates short regions that match prior sequences. These short sequences are generally missed by those trying to prove recombination that keeps long stretches intact.

Thus, there is too much recombination for these methodolgies to detect as stretches greater than 100 BP.

Oracle · Mar 28, 2008

Re: Homologous Recombination is Very Rare or Absent in Human Influenza A Virus

Epochal Evolution Shapes the Phylodynamics of Interpandemic Influenza A (H3N2) in Humans. Katia Koelle, Sarah Cobey, Bryan Grenfell, and Mercedes Pascual. Science 314(5807):1898 - 1903 DOI: 10.1126/science.1132745

Human influenza A (subtype H3N2) is characterized genetically by the limited standing diversity of its hemagglutinin and antigenically by clusters that emerge and replace each other within 2 to 8 years. By introducing an epidemiological model that allows for differences between the genetic and antigenic properties of the virus's hemagglutinin, we show that these patterns can arise from cluster-specific immunity alone. Central to the formulation is a genotype-to-phenotype mapping, based on neutral networks, with antigenic phenotypes, not genotypes, determining the degree of strain cross-immunity. The model parsimoniously explains well-known, as well as previously unremarked, features of interpandemic influenza dynamics and evolution. It captures the observed boom-and-bust pattern of viral evolution, with periods of antigenic stasis during which genetic diversity grows, and with episodic contraction of this diversity during cluster transitions.

Antigenic stasis = mammalian immune systems effectively disable viral infection, "removing" these sequences from the viral databases that are, as Niman has pointed out, incomplete and spotty.

HenryN · Mar 28, 2008

Re: Homologous Recombination is Very Rare or Absent in Human Influenza A Virus

Commentary

http://www.recombinomics.com/News/03280802/Random_Mutations.html

HenryN · Mar 28, 2008

Re: Homologous Recombination is Very Rare or Absent in Human Influenza A Virus

gsgs said:

which two viruses exactly should be involved in the
1991-2002 recombination ?

Best I could find was
HA: p=0.0000000000811061249 Daejeon/258/02(H3N2) , Ningbo/198/03(H3N2)

or this:

Code:

 1123/Daejeon/258/02(H3N2)       4782/Habana/26/05 (H3N2)
--------------------------------------------------------------------------------------------------------------
----------------------------------------------------------------------------------............................
..............................................................................................................
..............................................................................................................
...............................................o......................................o.......................
......o..........o.......................-..................................................................o.
.......o...o.......o..o....o....o...o...............................................ooo.........o...o.....o.o.
oo..oo.o................oo...............o.........o..o.....o.....oo....o..............o....o..o.-o......-----
--------------------------------------------------------------------------------------------------------------
--------------------------------------------------------------------------------------------------------------
--------------------------------------------------------------------------------------------------------------
--------------------------------------------------------------------------------------------------------------
--------------------------------------------------------------------------------------------------------------
--------------------------------------------------------------------------------------------------------------
--------------------------------------------------------------------------------------------------------------
--------------------------------------------------------------------------------------------------------------
---------------------------------------------------------------------------------

The best match for the central region is easily seen by just running a blast against the entire database at Genbank. Thet will return the best match, and it will be quite clear that the central region came from a decade earlier.

HenryN · Mar 28, 2008

Re: Homologous Recombination is Very Rare or Absent in Human Influenza A Virus

Here are the top 100 matches for the recombined center of the gene

gb|AY589657.1| Influenza A virus (A/Incheon/260/2002(H3N2)) h... 746 0.0
gb|AY589655.1| Influenza A virus (A/Daejeon/258/2002(H3N2)) h... 746 0.0
gb|AY589660.1| Influenza A virus (A/Kyongbuk/320/2002(H3N2)) ... 740 0.0
gb|AY661125.1| Influenza A virus (A/Netherlands/938/92(H3N2))... 719 0.0
gb|AY661074.1| Influenza A virus (A/Shanghai/24/90(H3N2)) hem... 713 0.0
gb|AY661068.1| Influenza A virus (A/Netherlands/650/89 (H3N2)... 713 0.0
gb|AY661067.1| Influenza A virus (A/Netherlands/620/89 (H3N2)... 713 0.0
gb|AY661062.1| Influenza A virus (A/Singapore/36/89(H3N2)) he... 713 0.0
gb|AY661060.1| Influenza A virus (A/Singapore/34/89(H3N2)) he... 713 0.0
gb|AY661029.1| Influenza A virus (A/Netherlands/738/89(H3N2))... 713 0.0
emb|Z46410.1| Influenza A virus (A/Hong Kong/23/1992(H3N2)) m... 713 0.0
emb|Z46409.1| Influenza A virus (A/Hong Kong/34/1990(H3N2)) m... 713 0.0
emb|Z46392.1| Influenza A virus (A/Beijing/32/1992(H3N2)) mRN... 713 0.0
gb|AF386607.1|AF386607 Influenza A virus (A/Seoul/22/90(H3N2)... 713 0.0
gb|AF386605.1|AF386605 Influenza A virus (A/Seoul/16/89(H3N2)... 713 0.0
gb|AF008667.1|AF008667 Influenza A virus (A/Guangdong/89(H3N2... 713 0.0
gb|AF008665.1|AF008665 Influenza A virus (A/Guizhou/54/89(H3N... 713 0.0
gb|AF008660.1|AF008660 Influenza A virus (A/Shanghai/24/90(H3... 713 0.0
gb|AF008658.1|AF008658 Influenza A virus (A/Hong Kong/34/90(H... 713 0.0
gb|L18998.1|FLAGUAHA1 Influenza A virus (A/Guangdong/39/1989(... 713 0.0
gb|L20103.1|FLAHAIN190 Influenza A virus (A/Indiana/01/1990(H... 713 0.0
gb|L20104.1|FLAHAID190 Influenza A virus (A/Indiana/01/1990(H... 713 0.0
gb|CY010756.1| Influenza A virus (A/Memphis/8/1988(H3N2)) seg... 710 0.0
gb|DQ508833.1| Influenza A virus (A/Beijing/353/1989(H3N2)) h... 710 0.0
gb|CY003544.1| Influenza A virus (A/Hong Kong/7/87(H3N2)) seg... 710 0.0
gb|CY003512.1| Influenza A virus (A/Hong Kong/2/88(H3N2)) seg... 710 0.0
gb|CY002088.1| Influenza A virus (A/Memphis/66/86(H3N2)) segm... 710 0.0
gb|AY661066.1| Influenza A virus (A/Beijing/353/89(H3N2)) hem... 710 0.0
gb|AY661065.1| Influenza A virus (A/Victoria/1/89(H3N2)) hema... 710 0.0
gb|AY661064.1| Influenza A virus (A/Singapore/53/89(H3N2)) he... 710 0.0
gb|AY661063.1| Influenza A virus (A/Singapore/40/89(H3N2)) he... 710 0.0
gb|AY661061.1| Influenza A virus (A/Singapore/35/89(H3N2)) he... 710 0.0
gb|AY661059.1| Influenza A virus (A/Hongkong/1/89(H3N2)) hema... 710 0.0
gb|AY661058.1| Influenza A virus (A/Wellington/5/89(H3N2)) he... 710 0.0
gb|CY008716.1| Influenza A virus (A/Memphis/11/86(H3N2)) segm... 710 0.0
gb|CY008724.1| Influenza A virus (A/Memphis/5/88(H3N2)) segme... 710 0.0
emb|Z46391.1| Influenza A virus (A/Beijing/353/1989(H3N2)) mR... 710 0.0
gb|AF386606.1|AF386606 Influenza A virus (A/Seoul/50/91(H3N2)... 710 0.0
gb|AF386604.1|AF386604 Influenza A virus (A/Seoul/11/88(H3N2)... 710 0.0
gb|AF008899.1|AF008899 Influenza A virus (A/Bangkok/(H3N2)) h... 710 0.0
gb|AF008888.1|AF008888 Influenza A virus (A/Victoria/7/(H3N2)... 710 0.0
gb|AF008885.1|AF008885 Influenza A virus (A/Los_Angeles/(H3N2... 710 0.0
gb|AF008884.1|AF008884 Influenza A virus (A/Sichuan/2/(H3N2))... 710 0.0
gb|AF008881.1|AF008881 Influenza A virus (A/Kobe/768/88(H3N2)... 710 0.0
gb|AF008880.1|AF008880 Influenza A virus (A/Chiba/38/88(H3N2)... 710 0.0
gb|CY003352.1| Influenza A virus (A/Memphis/13/88(H3N2)) segm... 710 0.0
gb|AF008684.1|AF008684 Influenza A virus (A/Beijing/353/89(H3... 710 0.0
gb|AF008669.1|AF008669 Influenza A virus (A/Shanghai/1/89(H3N... 710 0.0
gb|AF008668.1|AF008668 Influenza A virus (A/Shanghai/16/89(H3... 710 0.0
gb|AF008664.1|AF008664 Influenza A virus (A/England/648/89(H3... 710 0.0
gb|AF008659.1|AF008659 Influenza A virus (A/Kasauli/206/91(H3... 710 0.0
gb|AF008657.1|AF008657 Influenza A virus (A/Paris/1/92(H3N2))... 710 0.0
gb|AF008656.1|AF008656 Influenza A virus (A/Perth/01/92(H3N2)... 710 0.0
gb|M21648.1|FLAM686HA Influenza A virus (A/Mem/6/1986(H3N2)) ... 710 0.0
gb|L19413.1|FLAHASHANY Influenza A virus (A/Shanghai/11/1987/... 710 0.0
gb|L19414.1|FLAHASHANX Influenza A virus (A/Shanghai/11/1987/... 710 0.0
gb|L19415.1|FLAHASHANW Influenza A virus (A/Shanghai/11/1987/... 710 0.0
gb|L19416.1|FLAHASHANV Influenza A virus (A/Shanghai/11/1987/... 710 0.0
gb|L20119.1|FLAHAI1389 Influenza A/Singapore/13/89 original s... 710 0.0
gb|L20118.1|FLAHAS1389 Influenza A/Singapore/13/89 from embry... 710 0.0
gb|L20114.1|FLAHAS1289 Influenza A/Singapore/12/89 from embry... 710 0.0
gb|CY011480.1| Influenza A virus (A/Memphis/2/1990(H3N2)) seg... 708 0.0
gb|AY661070.1| Influenza A virus (A/Memphis/5/90(H3N2)) hemag... 708 0.0
gb|AY661069.1| Influenza A virus (A/Memphis/2/90(H3N2)) hemag... 708 0.0
gb|CY008732.1| Influenza A virus (A/Memphis/15/88(H3N2)) segm... 708 0.0
gb|L75975.1|FLASEG4A Influenza A virus (A/Finland/110/1989(H3... 708 0.0
gb|CY016483.1| Influenza A virus (A/New York/800/1993(H3N2)) ... 704 0.0
gb|CY013765.1| Influenza A virus (A/New York/799/1993(H3N2)) ... 704 0.0
gb|CY013741.1| Influenza A virus (A/New York/795/1993(H3N2)) ... 704 0.0
gb|CY013725.1| Influenza A virus (A/New York/792/1993(H3N2)) ... 704 0.0
gb|CY013709.1| Influenza A virus (A/New York/790/1993(H3N2)) ... 704 0.0
gb|CY013653.1| Influenza A virus (A/New York/774/1993(H3N2)) ... 704 0.0
gb|CY014151.1| Influenza A virus (A/New York/796/1993(H3N2)) ... 704 0.0
gb|CY014143.1| Influenza A virus (A/New York/793/1993(H3N2)) ... 704 0.0
gb|CY013693.1| Influenza A virus (A/New York/788/1993(H3N2)) ... 704 0.0
gb|CY013685.1| Influenza A virus (A/New York/787/1993(H3N2)) ... 704 0.0
gb|CY013661.1| Influenza A virus (A/New York/776/1993(H3N2)) ... 704 0.0
gb|CY013637.1| Influenza A virus (A/New York/772/1993(H3N2)) ... 704 0.0
gb|CY013605.1| Influenza A virus (A/New York/757/1993(H3N2)) ... 704 0.0
gb|CY013208.1| Influenza A virus (A/New York/785/1993(H3N2)) ... 704 0.0
gb|CY013200.1| Influenza A virus (A/New York/783/1993(H3N2)) ... 704 0.0
gb|CY012784.1| Influenza A virus (A/New York/786/1993(H3N2)) ... 704 0.0
gb|CY012776.1| Influenza A virus (A/New York/779/1993(H3N2)) ... 704 0.0
gb|CY012768.1| Influenza A virus (A/New York/778/1993(H3N2)) ... 704 0.0
gb|CY012760.1| Influenza A virus (A/New York/777/1993(H3N2)) ... 704 0.0
gb|CY012160.1| Influenza A virus (A/New York/762/1993(H3N2)) ... 704 0.0
gb|CY012136.1| Influenza A virus (A/New York/759/1993(H3N2)) ... 704 0.0
gb|CY003520.1| Influenza A virus (A/Hong Kong/24/85(H3N2)) se... 704 0.0
gb|AY661149.1| Influenza A virus (A/Netherlands/179/93(H3N2))... 704 0.0
gb|AY661147.1| Influenza A virus (A/Madrid/G122/93(H3N2)) hem... 704 0.0
gb|AY661131.1| Influenza A virus (A/Netherlands/3/93(H3N2)) h... 704 0.0
gb|AY661118.1| Influenza A virus (A/Madrid/OV31/92(H3N2)) hem... 704 0.0
gb|AY661117.1| Influenza A virus (A/Madrid/G58/92(H3N2)) hema... 704 0.0
gb|AY661116.1| Influenza A virus (A/Tilburg/5957/92(H3N2)) he... 704 0.0
gb|AY661115.1| Influenza A virus (A/Amsterdam/4112/92(H3N2)) ... 704 0.0
gb|AY661114.1| Influenza A virus (A/Nijmegen/3129/92(H3N2)) h... 704 0.0
gb|AY661079.1| Influenza A virus (A/Madrid/G12/91(H3N2)) hema... 704 0.0
gb|AY661073.1| Influenza A virus (A/Victoria/2/90(H3N2)) hema... 704 0.0
gb|AY661072.1| Influenza A virus (A/Seoul/1/90(H3N2)) hemaggl... 704 0.0
gb|AY661056.1| Influenza A virus (A/Stockholm/12/88(H3N2)) he... 704 0.0

HenryN · Mar 28, 2008

Re: Homologous Recombination is Very Rare or Absent in Human Influenza A Virus

Here are the top matches for the first 560 positions (without recombination, H3N2 from 2002 matches other H3N2 isolates from the same time period).

The recombination of the central region is well into the OBVIOUS category and a VERY easy call

gb|EF568925.1| Influenza A virus (A/Thailand/Siriraj-01/2003(... 1011 0.0
gb|EF473553.1| Influenza A virus (A/New Mexico/17/2003(H3)) s... 1011 0.0
gb|AY695089.1| Influenza A virus (A/Ningbo/198/03(H3N2)) hema... 1011 0.0
gb|AY589661.1| Influenza A virus (A/Kyongnam/347/2002(H3N2)) ... 1011 0.0
gb|AY589657.1| Influenza A virus (A/Incheon/260/2002(H3N2)) h... 1011 0.0
gb|AY589655.1| Influenza A virus (A/Daejeon/258/2002(H3N2)) h... 1011 0.0
gb|AY589654.1| Influenza A virus (A/Chungnam/447/2002(H3N2)) ... 1011 0.0
gb|AY589653.1| Influenza A virus (A/Cheonnam/432/2002(H3N2)) ... 1011 0.0
gb|AY589651.1| Influenza A virus (A/Cheonnam/338/2002(H3N2)) ... 1011 0.0
gb|AY589649.1| Influenza A virus (A/Cheju/311/2002(H3N2)) hem... 1011 0.0
gb|AY589647.1| Influenza A virus (A/Pusan/504/2002(H3N2)) hem... 1011 0.0
gb|AY963796.1| Influenza A Virus (A/Fujian/182/2003(H3N2)) he... 1011 0.0
gb|AY963784.1| Influenza A Virus (A/Fujian/258/2003(H3N2)) he... 1011 0.0
gb|AY531059.1| Influenza A virus (A/Denmark/18-2/03(H3N2)) he... 1011 0.0
gb|DQ179520.1| Influenza A virus (A/Bangladesh/C5-20/2003(H3N... 1011 0.0
gb|DQ179519.1| Influenza A virus (A/Bangladesh/C5-19/2003(H3N... 1011 0.0
gb|DQ179517.1| Influenza A virus (A/Bangladesh/C5-17/2003(H3N... 1011 0.0
gb|DQ179515.1| Influenza A virus (A/Bangladesh/C5-15/2003(H3N... 1011 0.0
gb|DQ179512.1| Influenza A virus (A/Bangladesh/C5-12/2003(H3N... 1011 0.0
gb|DQ179496.1| Influenza A virus (A/Finland/C4-24/2003(H3N2))... 1011 0.0
gb|EF473481.1| Influenza A virus (A/Korea/770/2002(H3N2)) seg... 1009 0.0
gb|EU106671.1| Influenza A virus (A/Austria/76359/2003(H3N2))... 1005 0.0
gb|EF568926.1| Influenza A virus (A/Thailand/Siriraj-02/2003(... 1005 0.0
gb|EF692555.1| Influenza A virus (A/Trieste/29/2003(H3N2)) he... 1005 0.0
gb|EF692548.1| Influenza A virus (A/Trieste/01/2003(H3N2)) he... 1005 0.0
gb|EF566153.1| Influenza A virus (A/Taiwan/1569/2004(H3N2)) s... 1005 0.0
gb|EF473627.1| Influenza A virus (A/Nebraska/41/2003(H3N2)) s... 1005 0.0
gb|EF473622.1| Influenza A virus (A/Arizona/1/2004(H3N2)) seg... 1005 0.0
gb|EF473621.1| Influenza A virus (A/Nebraska/22/2003(H3N2)) s... 1005 0.0
gb|EF473593.1| Influenza A virus (A/Washington/7/2003(H3)) se... 1005 0.0
gb|EF473590.1| Influenza A virus (A/Vermont/8/2003(H3)) segme... 1005 0.0
gb|EF473589.1| Influenza A virus (A/Vermont/10/2003(H3)) segm... 1005 0.0
gb|EF473567.1| Influenza A virus (A/Texas/144/2003(H3)) segme... 1005 0.0
gb|EF473560.1| Influenza A virus (A/Oklahoma/8/2003(H3)) segm... 1005 0.0
gb|EF473534.1| Influenza A virus (A/Kansas/3/2003(H3)) segmen... 1005 0.0
gb|EF473531.1| Influenza A virus (A/Indiana/5/2003(H3)) segme... 1005 0.0
gb|EF473530.1| Influenza A virus (A/Idaho/6/2003(H3)) segment... 1005 0.0
gb|EF473516.1| Influenza A virus (A/Wyoming/56/2003(H3)) segm... 1005 0.0
gb|EF473509.1| Influenza A virus (A/Arizona/11/2003(H3)) segm... 1005 0.0
gb|EF467827.1| Influenza A virus (A/Ishikawa/102/2002(H3N2)) ... 1005 0.0
gb|CY017949.1| Influenza A virus (A/Queensland/40/2003(H3N2))... 1005 0.0
gb|CY017563.1| Influenza A virus (A/Queensland/33/2003(H3N2))... 1005 0.0
gb|DQ865966.1| Influenza A virus (A/Fujian/411/2002(H3N2)) he... 1005 0.0
gb|DQ114505.1| Influenza A virus (A/Stockholm/25/02(H3N2)) cl... 1005 0.0
gb|DQ114504.1| Influenza A virus (A/Stockholm/25/02(H3N2)) cl... 1005 0.0
gb|DQ114503.1| Influenza A virus (A/Stockholm/25/02(H3N2)) cl... 1005 0.0
gb|DQ114502.1| Influenza A virus (A/Stockholm/25/02(H3N2)) cl... 1005 0.0
gb|AY972839.1| Influenza A virus (A/RioGdeSul/213/04(H3N2)) h... 1005 0.0
gb|CY003680.1| Influenza A virus (A/New York/485/2003(H3N2)) ... 1005 0.0
gb|CY009244.1| Influenza A virus (A/New York/477/2003(H3N2)) ... 1005 0.0
gb|CY000073.2| Influenza A virus (A/New York/47/2003(H3N2)) s... 1005 0.0
gb|CY001640.1| Influenza A virus (A/New York/269/2003(H3N2)) ... 1005 0.0
gb|CY001536.1| Influenza A virus (A/New York/196/2003(H3N2)) ... 1005 0.0
gb|CY001373.1| Influenza A virus (A/New York/201/2003(H3N2)) ... 1005 0.0
gb|DQ167294.1| Influenza A virus (A/Finland/435/2003 (H3N2)) ... 1005 0.0
gb|DQ167281.1| Influenza A virus (A/Finland/320/2003 (H3N2)) ... 1005 0.0
gb|DQ167280.1| Influenza A virus (A/Finland/319/2003 (H3N2)) ... 1005 0.0
gb|DQ167271.1| Influenza A virus (A/Finland/305/2003 (H3N2)) ... 1005 0.0
gb|DQ167260.1| Influenza A virus (A/Finland/180/2003 (H3N2)) ... 1005 0.0
gb|CY001253.1| Influenza A virus (A/New York/199/2003(H3N2)) ... 1005 0.0
gb|CY001112.1| Influenza A virus (A/New York/27/2003(H3N2)) s... 1005 0.0
gb|CY001096.1| Influenza A virus (A/New York/39/2003(H3N2)) s... 1005 0.0
gb|CY001088.1| Influenza A virus (A/New York/24/2003(H3N2)) s... 1005 0.0
gb|DQ179526.1| Influenza A virus (A/Bangladesh/C5-26/2003(H3N... 1005 0.0
gb|DQ179525.1| Influenza A virus (A/Bangladesh/C5-25/2003(H3N... 1005 0.0
gb|DQ179524.1| Influenza A virus (A/Bangladesh/C5-24/2003(H3N... 1005 0.0
gb|DQ179522.1| Influenza A virus (A/Bangladesh/C5-22/2003(H3N... 1005 0.0
gb|DQ179521.1| Influenza A virus (A/Bangladesh/C5-21/2003(H3N... 1005 0.0
gb|DQ179518.1| Influenza A virus (A/Bangladesh/C5-18/2003(H3N... 1005 0.0
gb|DQ179516.1| Influenza A virus (A/Bangladesh/C5-16/2003(H3N... 1005 0.0
gb|DQ179511.1| Influenza A virus (A/Singapore/C5-11/2003(H3N2... 1005 0.0
gb|DQ179506.1| Influenza A virus (A/Bangladesh/C5-6/2002(H3N2... 1005 0.0
gb|DQ179503.1| Influenza A virus (A/South Korea/C5-3/2002(H3N... 1005 0.0
gb|DQ179497.1| Influenza A virus (A/Netherlands/C4-25/2003(H3... 1005 0.0
gb|DQ179492.1| Influenza A virus (A/Italy/C4-20/2003(H3N2)) h... 1005 0.0
gb|DQ179474.1| Influenza A virus (A/Finland/C4-2/2003(H3N2)) ... 1005 0.0
gb|DQ179471.1| Influenza A virus (A/Philippines/C3-57/2002(H3... 1005 0.0
gb|DQ179467.1| Influenza A virus (A/Philippines/C3-53/2002(H3... 1005 0.0
gb|DQ179464.1| Influenza A virus (A/Philippines/C3-50/2002(H3... 1005 0.0
gb|DQ179462.1| Influenza A virus (A/Philippines/C3-48/2002(H3... 1005 0.0
gb|DQ179458.1| Influenza A virus (A/Philippines/C3-44/2002(H3... 1005 0.0
gb|DQ179457.1| Influenza A virus (A/Philippines/C3-43/2002(H3... 1005 0.0
gb|DQ179456.1| Influenza A virus (A/Philippines/C3-42/2002(H3... 1005 0.0
gb|DQ179455.1| Influenza A virus (A/Philippines/C3-41/2002(H3... 1005 0.0
gb|DQ179453.1| Influenza A virus (A/Philippines/C3-39/2002(H3... 1005 0.0
gb|DQ179449.1| Influenza A virus (A/Philippines/C3-35/2002(H3... 1005 0.0
gb|DQ179447.1| Influenza A virus (A/Philippines/C3-33/2002(H3... 1005 0.0
gb|DQ179446.1| Influenza A virus (A/Philippines/C3-32/2002(H3... 1005 0.0
gb|DQ179445.1| Influenza A virus (A/Philippines/C3-31/2002(H3... 1005 0.0
gb|DQ179442.1| Influenza A virus (A/Philippines/C3-28/2002(H3... 1005 0.0
gb|DQ179441.1| Influenza A virus (A/Philippines/C3-27/2002(H3... 1005 0.0
gb|DQ179440.1| Influenza A virus (A/Philippines/C3-26/2002(H3... 1005 0.0
gb|DQ179437.1| Influenza A virus (A/Philippines/C3-23/2002(H3... 1005 0.0
gb|DQ179435.1| Influenza A virus (A/Philippines/C3-21/2002(H3... 1005 0.0
gb|DQ179434.1| Influenza A virus (A/Philippines/C3-20/2002(H3... 1005 0.0
gb|DQ179432.1| Influenza A virus (A/Philippines/C3-18/2002(H3... 1005 0.0
gb|DQ179431.1| Influenza A virus (A/Philippines/C3-17/2002(H3... 1005 0.0
gb|DQ179429.1| Influenza A virus (A/Philippines/C3-15/2002(H3... 1005 0.0
gb|DQ167279.1| Influenza A virus (A/Finland/314/2003 (H3N2)) ... 1003 0.0

Oracle · Mar 28, 2008

Re: Homologous Recombination is Very Rare or Absent in Human Influenza A Virus

I'm having a hard time visualizing the mechanics of this recombination of short stretches in the middle of the genes.

You got an idea of how this works?

HenryN · Mar 28, 2008

Re: Homologous Recombination is Very Rare or Absent in Human Influenza A Virus

gsgs said:
but why is there no HA similar to one of these
Korean maybe-recombinants isolated worlwide ever ?
If those were real recombinants then at least
they didn't spread and the 2003/4-Fujian-semipandemic
was not affected/initiated by that recombination.

The Habana/26/05 sequence looks also suspect to me.
Different mutation rates in HA1 and HA2 may explain some
of the other irregularities.

I found no other clear,obvious recombination candidates in human
H3N2-HA1. (4600 sequences examined)

Code:

se7a43hk.nam, 4623 sequences, nucleotide positions 300-900 of HA only p=0.0000000030709767637 4369/Habana/26/2005 (H3N2) 3754/Wisconsin/68e/2005(H3) p=0.0000000201891826443 976/Daejeon/258/2002(H3N2) 965/Denmark/18-2/03(H3N2) p=0.0000000418979466040 978/Incheon/260/2002(H3N2) 3261/Finland/319/2003 (H3N2) p=0.0000000867885326359 981/Kyongbuk/320/2002(H3N2) 943/Wyoming/3/03(H3N2) p=0.0000016188996383076 759/Kwangju/1/97(H3N2) 3545/Oslo/871/99(H3N2) p=0.0000021358936936049 755/Kangwon/11/99(H3N2) 699/Madrid/SO2523/99(H3N2)

If you analysis can't see the obvious recombination in the center of the 2002 isolates, your program has a problem. The first and last third of the gene looks like a typical H3N2 isolate from 2002, while the middle third looks like isolates from a decade earlier. It really doesn't get any clearer than that. Usually the recombined regions are much smaller and involve more parents.

The 2002 isolates are well into the obvious category. The matches with the earlier isolates don't happen by chance and the middle third of the gene doesn't evolve more slowly. If anything, it evolves more rapidly. The matches in the center are not due to random changes.

If your program can't easily see such a dramatic example, your program needs work. The free public BLAST program

http://www.ncbi.nlm.nih.gov/blast/Blast.cgi?CMD=Web&PAGE_TYPE=BlastHome

used by everyone who looks at sequences, has no problem returning results which clearly signal recombination.

HenryN · Mar 28, 2008

Re: Homologous Recombination is Very Rare or Absent in Human Influenza A Virus

Oracle said:
I'm having a hard time visualizing the mechanics of this recombination of short stretches in the middle of the genes.

You got an idea of how this works?

The nascent RNA switches templates, then switches back.

Oracle · Mar 28, 2008

Re: Homologous Recombination is Very Rare or Absent in Human Influenza A Virus

We're on the same page, darlin' - in the larger sense. Have you seen any indication of correlation to sequence signals (or other factors) that might signal internal template switching position? By recombination events, we're not talking about single residue polymorphisms, but groups of them whose representation within viral populations is exanded and extended over time - correct?

You've seen these papers, I would suppose:

Different De Novo Initiation Strategies Are Used by Influenza Virus RNA Polymerase on Its cRNA and Viral RNA Promoters during Viral RNA Replication. Journal of Virology,Vol. 80(5):2337-2348 (2006), and Influenza Virion-Derived Viral Ribonucleoproteins Synthesize both mRNA and cRNA In Vitro. Journal of Virology, Vol. 81(5):2196-2204, March 2007.

The latter paper was a doosey (no shift in mRNA to cRNA during viral life cycle), almost as unsettling as having to admit that homologous recombination exists. "However, it is not possible to rule out that host protein(s) not present in these partially purified polymerase and/or NP preparations may influence transcription or replication. "

I found this paper some time ago, cruised through it, and set it aside. I had to dig to find it again, because your posts started ringing bells.

I think the host, under certain conditions associated with altered production of known factors, influences the rate of homologous recombination. Thus my suggestion that HC is a syncopated (in response to host) and punctuated (not continuous) process.

AlaskaDenise · Mar 28, 2008

Re: Homologous Recombination is Very Rare or Absent in Human Influenza A Virus

niman said:
Commentary

http://www.recombinomics.com/News/03280802/Random_Mutations.html

Commentary http://www.recombinomics.com/feed.xml http://www.newsnow.co.uk/nn/Recombinomics

The Demise of Random Mutations

Recombinomics Commentary 21:11
March 28, 2008

The upcoming paper, with the unlikely title, ?Homologous Recombination is Very Rare or Absent in Human Influenza A Virus? signals the beginning of the end of one of the basic tenets of influenza genetics, Genetic Drift via selection of random mutations. This basic tenet has guided research and vaccine development in influenza genetics and is an underlying principle of evolution in general.

For influenza and other single stranded RNA viruses, evolution is thought to be driven by a series of random mutations generated during the copying of the virus? genetic information. The errors which provide a selection advantage would then be incorporated into the viral genome, and these changes would lead to a drift of genetic information. These changes would allow the virus to escape from immunological attack, and lead to frequent changes in vaccine targets.

Since changes by random mutation are thought to be unpredictable, new vaccine targets are selected after the virus has evolved. Of course this leads to vaccines that are already somewhat out of date by the time they are available for use.

The concept that the changes were due to recycling of prior selected mutations through recombination represented a paradigm shift that was thoroughly discounted by influenza geneticists, including the authors of the above paper. They had previously argued that changes in the 1918 pandemic virus were due to differential evolution of the HA gene, and that homologous recombination in negative sense RNA viruses was rare and played little or no role in viral evolution in general and influenza evolution in particular.

The above paper represents the results from an analysis of human influenza sequences. The search was in a limited database of complete human sequences, which eliminated the detection of recombination in partial sequences, or recombination that involved donor sequences influenza isolates from birds or swine. Thus, the number of examples would be significantly lower than the true instance. Although only two examples of recombination involving long stretches of recombined sequences were found, there were over 300 examples of small stretches of homolgous recombination which were statistically significant. The significance for the 240 examples in the NA gene had a p value of <1.2 X10 to the minus 10. Thus, the likelihood that the result was not due to chance was more than a billion to one.

Since the evidence for small regions of recombination was strong, the authors have focused on lab error to explain the examples. They cite amplification of contamination or mixed sequences to create lab generated recombination. However, they provide no evidence that any of the more than 300 short examples are due to such contamination. Moreover, examples of recombination in shorter human influenza sequences, which were excluded from this paper, as well as examples in swine and avian influenza, contain examples of recombination which are present in multiple isolates in multiple locations.

The statistically significant examples are the beginning of the end of the use of random mutations to explain influenza evolution. As additional sequences are generated, the random mutation explanation for rapid evolution becomes less tenable. For sequences from H5N1 genes, the number has risen markedly in recent years. Most newly acquired polymorphisms are readily detected in the database, and most are in other H5N1 sequences. Moreover, as the number of sequences rise, more shuffling of individual polymorphisms is found, especially when individual polymorphisms are traced. These tracings through the sequence database generate clear patterns, which can be used to predict new combinations. Moreover, the same polymorphisms can jump from one genetic background to another.

Recombination is frequently between closely related sequences, which result in the stable transfer in a limited number of changes per recombination event. These changes are typically mistaken for single nucleotide polymorphisms linked to copy errors. However, the statistically significant patterns described in this paper will lead to more extensive analysis of these polymorphisms, which will lead to the understanding of the true nature of these genetic changes, which are driven almost exclusively by homologous recombination.

.

HenryN · Mar 29, 2008

Re: Homologous Recombination is Very Rare or Absent in Human Influenza A Virus

Oracle said:
We're on the same page, darlin' - in the larger sense. Have you seen any indication of correlation to sequence signals (or other factors) that might signal internal template switching position? By recombination events, we're not talking about single residue polymorphisms, but groups of them whose representation within viral populations is exanded and extended over time - correct?

You've seen these papers, I would suppose:

Different De Novo Initiation Strategies Are Used by Influenza Virus RNA Polymerase on Its cRNA and Viral RNA Promoters during Viral RNA Replication. Journal of Virology,Vol. 80(5):2337-2348 (2006), and Influenza Virion-Derived Viral Ribonucleoproteins Synthesize both mRNA and cRNA In Vitro. Journal of Virology, Vol. 81(5):2196-2204, March 2007.

The latter paper was a doosey (no shift in mRNA to cRNA during viral life cycle), almost as unsettling as having to admit that homologous recombination exists. "However, it is not possible to rule out that host protein(s) not present in these partially purified polymerase and/or NP preparations may influence transcription or replication. "

I found this paper some time ago, cruised through it, and set it aside. I had to dig to find it again, because your posts started ringing bells.

I think the host, under certain conditions associated with altered production of known factors, influences the rate of homologous recombination. Thus my suggestion that HC is a syncopated (in response to host) and punctuated (not continuous) process.

The swine data supports high fidelity over decades, which may signal RNA repair, which may get confused in co-infections and use the wrong template. There are lots of possibilities and in view of the fact that the acknowledgement of statistically significant examples of homologous recombintion has taken decades, the literature on homologous recombintion in negative sense RNA virus needs some work.

gsgs · Mar 29, 2008

Re: Homologous Recombination is Very Rare or Absent in Human Influenza A Virus

here are some more mutation-pictures :
http://www.setbb.com/fluwiki2/viewtopic.php?p=842&mforum=fluwiki2

the clearest recombination-signal is from the Denmark/2003 sequence.
My program usually only considers one breakpoint so these
are not so easily found then.
Also, it lists only the best candidate (Habana) for one virus
(Daejeon) and then omits other candidates (1992).
The p-value for the 1992 sequences is not so small.

Also, when you remove the "c" , which are non-synonymous and
can be explained by immunity-avoiding, then the picture is less clear.

Code:

outer/?       middle/1992
    \             |
      \           |
        \        /
          \    /                  
          / \/___recombination
        /    | 
      /   Daejeon/2002
    /
Denmark/2003

or

Code:

middle?       
  \           
    \   Daejeon/2002
      \    /
        \/____recombination
         |
         |
   Denmark/2003

or even 2 recombinations, one before Daejeon/2002 and one after Daejeon/2002 ?

Homologous Recombination is Very Rare or Absent in Human Influenza A Virus

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