h5n8

gsgs · Nov 18, 2014

first post reserved for links,data,summary... to be completed later

1) A/index/i_h5n8a/2014,2014/01/01,SouthKorea,H5N8 -- 02,07,19,37,02,67,19,13 -- 1G,2G,3D,45J,5F,68C,7F,81E
2) A/index/i_h5n8b/2014,2014/01/01,SouthKorea,H5N8 -- 15,09,17,39,03,70,17,14 -- 1K,2G,3D,45J,5F,68C,7F,81E
[amino-acid differences from the bird-index with HA from se9agbi.26 -- type at flugenome.org]

128,060,037,033,021,019,029,057 promille difference to each other
292,139,081,057,032,027,029,048 # differences to each other

101,196,180,096,116,143,046,051 # differences of 1) to the flugenome.org - index
125,200,181,120,119,148,048,059 # differences of 2) to the flugenome.org - index

285,211,076,078,124,563,024,053 # differences of 1) to the Fujian-strain-index(2005)
128,219,081,104,125,563,026,060 # differences of 2) to the Fujian-strain-index(2005)

Code:

                                                                             0000000001111111111111 000000111111112222 000000001111111112 00000000000000001111 00000000111 00000000000011 000 000000000 
                                                                             0233357880133445667889 345788001133990011 003557890002222451 01123444455568990024 03344688124 00000011468802 379 111233446 
                                                                             5601683467838377898395 684945013646010367 014149734894568603 31989145966881280669 11236808584 12258947490253 083 678449356 
                                                                             5324348921281837652900 975605651138847545 984335909558407434 11986663028016717843 28462408319 54539131264849 903 830199660 
-codon-position--------------------------------------------------------------1222 2  1   11 2        121  11  2    11    2     22       1 1 1  22 1111    2 12    1  2 1     12212 1   1       2 11 1   
---Index---------------------------------------------------------------------AGGCGAGGCCTTAGTACCCCAA CTCCTAAACGCTAGACGT CAACAAACCAAGAAAGTA GAAGCCCTGCAAATTGAGCG AAAGCAGCTGC AAACCCCTATCACT GAA AAGAACCAG 
   1 >Index/h5n8g1a,0-15669                                                  ...................... .................. .................. .................... ........... .............. ... .........        0      0 ,      0      0       1:>Index/h5n8g1a,0-15669                                                  
   2 >A/breeder duck/Korea/Gochang1/2014,2014/01/16,South Korea,H5N8,Avian   ...T....A........T..G. ........T......AT. TG.....T......G..G .................... ..G........ .G.........G.. .G. G....T...       18     18 ,     18     18       2:>A/breeder duck/Korea/Gochang1/2014,2014/01/16,South Korea,H5N8,Avian   
   3 >A/duck/Zhejiang/W24/2013,2013/11/14,China,H5N8,Avian                   G........T.CGA.G...... T..A.C...A..G.G... ..CT....A..A...... AGG..T.C.....A..GAAA .G..A.ATCA. G.GTTTT..CT..C ..G .C.G..T..       45     45 ,     45     45       3:>A/duck/Zhejiang/W24/2013,2013/11/14,China,H5N8,Avian                   
   4 >A/duck/Zhejiang/6D18/2013,2013/12/14,China,H5N8,Avian                  ....AGAA..C...G.A.TT.. T.T.CCGG..TC.AG..C .....G...GT.GG.AC. ...AT...AA.GG.CAG... CG.A.G....T G.GTTT.CG...A. A.G .CAGG..TA       57     57 ,     57     57       4:>A/duck/Zhejiang/6D18/2013,2013/12/14,China,H5N8,Avian                  
   5 >A/Baikal teal/Korea/H52/2014,2014/01/20,South Korea,H5N8,Avian         .AAT.............T..GG .C......T.......T. TG..G.GT......G..G ......T...G......... ..G........ .G.........G.. .G. G....T...       24     24 ,     24     24       5:>A/Baikal teal/Korea/H52/2014,2014/01/20,South Korea,H5N8,Avian         
                                                                                                                                                                                                        
---Index---------------------------------------------------------------------AGGCGAGGCCTTAGTACCCCAA CTCCTAAACGCTAGACGT CAACAAACCAAGAAAGTA GAAGCCCTGCAAATTGAGCG AAAGCAGCTGC AAACCCCTATCACT GAA AAGAACCAG 
-codon-position--------------------------------------------------------------1222 2  1   11 2        121  11  2    11    2     22       1 1 1  22 1111    2 12    1  2 1     12212 1   1       2 11 1   
                                                                             0000000001111111111111 000000111111112222 000000001111111112 00000000000000001111 00000000111 00000000000011 000 000000000 
                                                                             0233357880133445667889 345788001133990011 003557890002222451 01123444455568990024 03344688124 00000011468802 379 111233446 
                                                                             5601683467838377898395 684945013646010367 014149734894568603 31989145966881280669 11236808584 12258947490253 083 678449356 
                                                                             5324348921281837652900 975605651138847545 984335909558407434 11986663028016717843 28462408319 54539131264849 903 830199660

Code:

                                                      0011 01112 00011 000011 00 00 0 00                                  
                                                      1148 31271 05802 157816 48 04 7 55                                  
                                                      2682 47690 96925 639078 59 20 2 33                                  
                                                      6997 84016 61401 468711 07 65 3 78                                  
-codon-position--------------------------------------- 11   1          22  11    2     1                                  
---Index----------------------------------------------CAAA AAACT GGGGG GGAAGT AC CA G GG                                  
   1 >Index/h5n8g1b,0-15669                           .... ..... ..... ...... .. .. . ..        0      0 ,      0      0  
   2 >A/Baikal teal/Korea/H66/2014,2014/01/21         T... ..... ..... ...... .. .. . ..        2      1 ,      2      1  
   3 >A/mallard/Korea/H297/2014,2014/01/29            T... ..... ..... ...... .. .. . ..        9      1 ,      9      1  
   4 >A/Baikal teal/Korea/H68/2014,2014/01/22         T... ..... ..... ...... .. .. . ..        6      1 ,      6      1  
   5 >A/white-fronted Gs/Korea/H231/2014,2014/01/28   T... .GG.. ..... ...... .. .. . ..       10      3 ,     10      3  
   6 >A/bean Gs/Korea/H328/2014,2014/02/01            T... .GG.. ..... ...... .. .. . ..        7      3 ,      7      3  
   7 >A/breeder Ck/Korea/H250/2014,2014/01/28         T... .GG.. ..... ...... .. .. . ..       10      3 ,     10      3  
   8 >A/bean Gs/Korea/H53/2014,2014/01/20             T... ..... ..... ...... .. .. . ..        9      1 ,      9      1  
   9 >A/Baikal teal/Korea/H96/2014,2014/01/23         T... ..... .A... ...... .. .. . ..        6      2 ,      6      2  
  10 >A/Baikal teal/Korea/H41/2014,2014/01/19         T... ..... .A... ...... .. .. . ..        3      2 ,      3      2  
  11 >A/breeder Ck/Korea/H122/2014,2014/01/24         TC.. ..... ..... ...... .. .. . .A        9      3 ,      9      3  
  12 >A/breeder Dk/Korea/H128/2014,2014/01/25         TC.. ..... ..... ...... .. T. . .A        7      4 ,      7      4  
  13 >A/broiler Dk/Korea/H145/2014,2014/01/25         TC.. ..... ..... ...... .. T. . .A        6      4 ,      6      4  
  14 >A/breeder Dk/Korea/H158/2014,2014/01/26         TC.. ..... ..... ...... .. .. . .A        9      3 ,      9      3  
  15 >A/broiler Dk/Korea/H65/2014,2014/01/21          TC.. ..... ..... ...... .. .. . .A       11      3 ,     11      3  
  16 >A/Baikal teal/Korea/H84/2014,2014/01/22         TC.. ..... ..... ...... .. .. . .A        6      3 ,      6      3  
  17 >A/broiler Dk/Korea/H48/2014,2014/01/20          T... ....C ..... .A..A. .. .. A A.       11      6 ,     11      6  
  18 >A/broiler Dk/Korea/H49/2014,2014/01/20          T... ....C ..... .A..A. .. .. A A.       10      6 ,     10      6  
  19 >A/bean Gs/Korea/H40/2014,2014/01/19             T... ..... ..... .A.... .. .. . ..        7      2 ,      7      2  
  20 >A/mallard/Korea/H207/2014,2014/01/27            T... ..... ..... ...... .. .. . ..        5      1 ,      5      1  
  21 >A/breeder Dk/Korea/H249/2014,2014/01/28         T... ..... ..... ...... .. .. . ..        7      1 ,      7      1  
  22 >A/waterfowl/Korea/S005/2014,2014/02/15          .... ..... ..... ...C.C GT .. . ..       14      4 ,     14      4  
  23 >A/broiler Dk/Korea/H31/2014,2014/01/19          ..C. ..... ....A ..GC.C GT .. . ..        7      7 ,      7      7  
  24 >A/breeder Dk/Korea/H200/2014,2014/01/27         ..C. ..... ....A ..GC.C GT .. . ..       12      7 ,     12      7  
  25 >A/broiler Dk/Korea/H29/2014,2014/01/18          ..C. ..... ....A ..GC.C GT .. . ..        7      7 ,      7      7  
  26 >A/Korean native Ck/Korea/H257/2014,2014/01/28   ..C. ..... ....A ..GC.C GT .. . ..        9      7 ,      9      7  
  27 >A/broiler Dk/Korea/H32/2014,2014/01/19          ..C. ..... ....A ..GC.C GT .. . ..       10      7 ,     10      7  
  28 >A/Baikal teal/Korea/H80/2014,2014/01/22         ..C. G.... A..A. A.GC.C GT .G . ..       12     11 ,     12     11  
  29 >A/Coot/Korea/H81/2014,2014/01/22                ..C. G.... A..A. A.GC.C GT .G . ..       11     11 ,     11     11  
  30 >A/baikal teal/Korea/Donglim3/2014,2014/01/17    ..C. G.... ..... ..GC.C GT .. . ..        8      7 ,      8      7  
  31 >A/broiler Dk/Korea/H133/2014,2014/01/25         ..C. ..... ..... ..GC.C GT .. . ..        9      6 ,      9      6  
  32 >A/mallard/Korea/W452/2014,2014/02/05            ..C. ..... ..... ..GC.C GT .. . ..       16      6 ,     16      6  
  33 >A/broiler Dk/Korea/H47/2014,2014/01/20          ..C. ..... ..... ..GC.C GT .. . ..        7      6 ,      7      6  
  34 >A/Baikal teal/Korea/H62/2014,2014/01/21         .... ..... ..... ..GC.C GT .. . ..       10      5 ,     10      5  
  35 >A/tundra swan/Korea/H411/2014,2014/02/06        .... ..... ..... ...C.C GT .. . ..        9      4 ,      9      4  
  36 >A/SBDk/Korea/H455-42/2014,2014/02/08            .... ..... ..... ...C.C GT .. . ..       12      4 ,     12      4  
  37 >A/common teal/Korea/H455-30/2014,2014/02/08     ...C ...T. ..A.. ...C.C GT .. . ..       13      7 ,     13      7  
  38 >A/broiler Dk/Korea/Buan2/2014,2014/01/17        ...C ...T. ..A.. ...C.C GT .. . ..       11      7 ,     11      7  
  39 >A/Ck/kumamoto/1-7/2014,2014/04/13               .... ..... ..A.. ...... .. .. . ..       23      1 ,     23      1  
                                                                                                                          
---Index----------------------------------------------CAAA AAACT GGGGG GGAAGT AC CA G GG                                  
-codon-position--------------------------------------- 11   1          22  11    2     1                                  
                                                      0011 01112 00011 000011 00 00 0 00                                  
                                                      1148 31271 05802 157816 48 04 7 55                                  
                                                      2682 47690 96925 639078 59 20 2 33                                  
                                                      6997 84016 61401 468711 07 65 3 78

gsgs · Nov 18, 2014

Re: h5n8

copy of a post from Oct.09 in the "today at genbank" thread

today 34 H5N8 genomes from South Korea, early 2014
all very similar to each other

15,09,17,--,03,--,17,14
amino-acids away from the bird index in the 8 segments

closest neighbors in the 8 segments :

Code:

>KJ508897,Avian,1,H5N8,South Korea,2014/01/18,2308,A/broiler duck/Korea/H29/2014



----------segment 1------------- 
 119   27 2266 11637 >JQ973691,A/duck/Jiangsu/k1203/2010,2010/12/05,China,H5N8,Avian,1
 122   28 2280 11814 >JX534562,A/wild duck/Shandong/628/2011,2011/04/14,China,H5N1,Avian,1
 149   34 2280 11808 >JX507352,A/duck/Jiangsu/m234/2012,2012/01/18,China,H5N2,Avian,1
 214   49 2280 3699 >CY091624,A/duck/Guangdong/wy11/2008,2008/06/06,China,H5N5,Avian,1
----------segment 2------------- 
 140   32 2274 11886 >KC282877,A/duck/Jiangsu/1-15/2011,2011/01/12,China,H4N2,Avian,2
 153   35 2274 11507 >JQ041393,A/duck/Eastern China/1111/2011,2011/01/,China,H5N2,Avian,2
 206   47 2274 11508 >JQ041394,A/goose/Eastern China/1112/2011,2011/01/,China,H5N2,Avian,2
----------segment 3------------- 
 158   34 2151 11912 >KC282878,A/duck/Jiangsu/1-15/2011,2011/01/12,China,H4N2,Avian,3
 172   37 2151 11556 >JQ041397,A/duck/Eastern China/1111/2011,2011/01/,China,H5N2,Avian,3
 232   50 2151 10847 >GU727668,A/duck/Eastern China/108/2008,2008/12/15,China,H5N1,Avian,3
----------segment 4------------- 
 275   47 1704 4942 >JX534565,A/wild duck/Shandong/628/2011,2011/04/14,China,H5N1,Avian,4
 281   48 1704 4883 >JQ973694,A/duck/Jiangsu/k1203/2010,2010/12/05,China,H5N8,Avian,4
 316   54 1704 4936 >JX507355,A/duck/Jiangsu/m234/2012,2012/01/18,China,H5N2,Avian,4
----------segment 5------------- 
 106   16 1497 11437 >JX534550,A/wild duck/Shandong/1/2011,2011/04/12,China,H5N1,Avian,5
 113   17 1497 11433 >JX507356,A/duck/Jiangsu/m234/2012,2012/01/18,China,H5N2,Avian,5
 120   18 1497 11439 >JX534566,A/wild duck/Shandong/628/2011,2011/04/14,China,H5N1,Avian,5
 128   19 1479 11290 >JQ973695,A/duck/Jiangsu/k1203/2010,2010/12/05,China,H5N8,Avian,5
 220   33 1497 12417 >KJ413835,A/breeder duck/Korea/Gochang1/2014,2014/01/16,South Korea,H5N8,Avian,5
----------segment 6------------- 
 186   26 1394 1571 >JQ973696,A/duck/Jiangsu/k1203/2010,2010/12/05,China,H5N8,Avian,6
 191   27 1413 1639 >KJ476674,A/duck/Zhejiang/6D18/2013,2013/12/14,China,H5N8,Avian,6
 198   28 1413 1638 >KJ476673,A/duck/Zhejiang/W24/2013,2013/11/14,China,H5N8,Avian,6
 205   29 1413 1635 >KJ413836,A/breeder duck/Korea/Gochang1/2014,2014/01/16,South Korea,H5N8,Avian,6
 559   79 1413 1622 >KF667707,A/common shelduck/Mongolia/2185/2011,2011/10/09,Mongolia,H3N8,Avian,6
----------segment 7------------- 
  91    9  982 12087 >JQ041413,A/duck/Eastern China/1111/2011,2011/01/,China,H5N2,Avian,7
  91    9  982 12505 >KC282882,A/duck/Jiangsu/1-15/2011,2011/01/12,China,H4N2,Avian,7
 173   17  982 12371 >JX534568,A/wild duck/Shandong/628/2011,2011/04/14,China,H5N1,Avian,7
----------segment 8------------- 
 119   10  838 7146 >JQ041417,A/duck/Eastern China/1111/2011,2011/01/,China,H5N2,Avian,8
 131   11  838 7375 >KC282883,A/duck/Jiangsu/1-15/2011,2011/01/12,China,H4N2,Avian,8
 143   12  838 7147 >JQ041418,A/goose/Eastern China/1112/2011,2011/01/,China,H5N2,Avian,8
 214   18  838 7296 >JX534569,A/wild duck/Shandong/628/2011,2011/04/14,China,H5N1,Avian,8

difference in 1/100 percent
difference in number of nucleotides
nucleotides available
number in database
name

kumamoto:16,11,16,03,17,15
1111:16,08,18,04,18,14
1-15:14,07,17,05,17,14
628:16,07,22,04,16,15

gsgs · Nov 18, 2014

Re: h5n8

2 strains: i_h5n8a , i_h5n8b

Code:

   0    0 2280    1 >Index/h5n8g1a,0-15669

----------segment 1------------- 
  17    4 2280 12769 >KJ413831,A/breeder duck/Korea/Gochang1/2014,2014/01/16,South Korea,H5N8,Avian,1
  26    6 2280 12772 >KJ476663,A/duck/Zhejiang/W24/2013,2013/11/14,China,H5N8,Avian,1
  39    9 2280 12773 >KJ476664,A/duck/Zhejiang/6D18/2013,2013/12/14,China,H5N8,Avian,1
 105   24 2280 12159 >KC986326,A/ruddy shelduck/Mongolia/1787/2011,2011/09/17,Mongolia,H3N8,Avian,1
 105   24 2280 12166 >KC986333,A/ruddy shelduck/Mongolia/881V/2009,2009/09/15,Mongolia,H3N8,Avian,1
 121   10  826  100 >AB478601,A/duck/Hokkaido/257/2004,2004//,Japan,H6N1,Avian,1
 140   30 2131 11750 >JX444802,A/wild bird/Korea/8G9/2005,2005/11/18,South Korea,H5N2,Avian,1
 147   33 2238 9172 >EF597495,A/migratory duck/Jiang Xi/7231/2004,2004//,China,H10N5,Avian,1
 153   35 2280 10988 >HM145700,A/mallard/Jiangxi/12147/2005,2005//,China,H6N2,Avian,1
 184   42 2280 11025 >HM145737,A/duck/Hunan/3748/2004,2004//,China,H6N8,Avian,1
 192   44 2280 1893 >CY029888,A/sharp-tailed sandpiper/Australia/10/2004,2004//,Australia,H11N9,Avian,1
----------segment 2------------- 
  13    3 2274 12707 >KJ413832,A/breeder duck/Korea/Gochang1/2014,2014/01/16,South Korea,H5N8,Avian,2
  26    6 2274 12710 >KJ476665,A/duck/Zhejiang/W24/2013,2013/11/14,China,H5N8,Avian,2
  48   11 2274 12711 >KJ476666,A/duck/Zhejiang/6D18/2013,2013/12/14,China,H5N8,Avian,2
 114   26 2274 11543 >JQ973692,A/duck/Jiangsu/k1203/2010,2010/12/05,China,H5N8,Avian,2
 131   30 2274 11733 >JX534563,A/wild duck/Shandong/628/2011,2011/04/14,China,H5N1,Avian,2
 451   36  797 9247 >EU301401,A/aquatic bird/Korea/CN-1/2004,2004//,South Korea,H3N6,Avian,2
 459   98 2135 10745 >GU396964,A/wild duck/Taiwan/WB306/2002,2002//,Taiwan,H4N6,Avian,2
 461  105 2274   58 >AB302086,A/duck/Mongolia/54/2001,2001//,Mongolia,H5N2,Avian,2
 567  129 2274 3002 >CY060239,A/mallard/Netherlands/1/1999,1999/10/04,Netherlands,H4N6,Avian,2
----------segment 3------------- 
  18    4 2151 12680 >KJ476667,A/duck/Zhejiang/W24/2013,2013/11/14,China,H5N8,Avian,3
  23    5 2151 12677 >KJ413833,A/breeder duck/Korea/Gochang1/2014,2014/01/16,South Korea,H5N8,Avian,3
  32    7 2151 12681 >KJ476668,A/duck/Zhejiang/6D18/2013,2013/12/14,China,H5N8,Avian,3
 113   24 2121 11590 >JQ973693,A/duck/Jiangsu/k1203/2010,2010/12/05,China,H5N8,Avian,3
 153   33 2151 11751 >JX507354,A/duck/Jiangsu/m234/2012,2012/01/18,China,H5N2,Avian,3
 176   38 2151 11757 >JX534564,A/wild duck/Shandong/628/2011,2011/04/14,China,H5N1,Avian,3
 185   40 2151 3611 >CY091634,A/duck/Guangdong/wy19/2008,2008/06/06,China,H5N5,Avian,3
 330   71 2151 8799 >EF124655,A/crested myna/Hong Kong/540/2006,2006//,Hong Kong,H5N1,Avian,3
 334   72 2151 9362 >EU329176,A/wild duck/Hunan/021/2005,2005//,China,H5N1,Avian,3
-----------segment 4--------------------
   0    0 1704 4517 >KJ413834,A/breeder duck/Korea/Gochang1/2014,2014/01/16,South Korea,H5N8,Avian,4
  52    9 1704 4523 >KJ476670,A/duck/Zhejiang/6D18/2013,2013/12/14,China,H5N8,Avian,4
  58   10 1704 4522 >KJ476669,A/duck/Zhejiang/W24/2013,2013/11/14,China,H5N8,Avian,4
 105   18 1704 4267 >JQ973694,A/duck/Jiangsu/k1203/2010,2010/12/05,China,H5N8,Avian,4
 146   25 1704 4319 >JX534565,A/wild duck/Shandong/628/2011,2011/04/14,China,H5N1,Avian,4
 164   28 1704 4172 >JQ041402,A/goose/Eastern China/1112/2011,2011/01/,China,H5N2,Avian,4
 170   29 1704 4171 >JQ041401,A/duck/Eastern China/1111/2011,2011/01/,China,H5N2,Avian,4
 187   32 1704 4313 >JX507355,A/duck/Jiangsu/m234/2012,2012/01/18,China,H5N2,Avian,4
 205   35 1704 1220 >CY091635,A/duck/Guangdong/wy19/2008,2008/06/06,China,H5N5,Avian,4
 450   74 1644 1951 >DQ992790,A/duck/Hunan/324/2006,2006//,China,H5N1,Avian,4
 458   78 1701 2742 >EU329186,A/wild duck/Hunan/211/2005,2005//,China,H5N1,Avian,4
 529   90 1701 2568 >EF670479,A/duck/Hunan/15/2004,2004/01/28,China,H5N1,Avian,4
 546   93 1701  487 >AY518362,A/duck/China/E319-2/03,2003//,China,H5N1,Avian,4
 568   96 1690  609 >AY651363,A/Dk/HN/5806/2003,2003//,China,H5N1,Avian,4
 581   99 1702  812 >CY028982,A/duck/Yunnan/4072/2003,2003//,China,H5N1,Avian,4
 591  100 1692  792 >CY028962,A/chicken/Hunan/23/2002,2002//,China,H5N1,Avian,4
----------segment 5------------- 
   6    1 1497 12385 >KJ413835,A/breeder duck/Korea/Gochang1/2014,2014/01/16,South Korea,H5N8,Avian,5
  33    5 1497 12389 >KJ476672,A/duck/Zhejiang/6D18/2013,2013/12/14,China,H5N8,Avian,5
  40    6 1497 12388 >KJ476671,A/duck/Zhejiang/W24/2013,2013/11/14,China,H5N8,Avian,5
 101   15 1479 11258 >JQ973695,A/duck/Jiangsu/k1203/2010,2010/12/05,China,H5N8,Avian,5
 133   20 1497 11405 >JX534550,A/wild duck/Shandong/1/2011,2011/04/12,China,H5N1,Avian,5
 327   49 1497 3162 >CY091628,A/duck/Guangdong/wy11/2008,2008/06/06,China,H5N5,Avian,5
 367   55 1497 10536 >HM145113,A/duck/Shantou/494/2002,2002//,China,H6N2,Avian,5
 400   60 1497 10504 >HM145081,A/duck/Shantou/728/2001,2001//,China,H6N2,Avian,5
 427   15  351   44 >AB282879,A/duck/Hokkaido/18/00,2000//,Japan,H10N4,Avian,5
 467   70 1497  561 >AJ427298,A/aquatic bird/Hong Kong/399/99,1999//,Hong Kong,H3N8,Avian,5
 514   77 1497 12523 >M30764,A/mallard/Astrakhan/244/1982,1982//,Russia,N6,Avian,5
 527   21  398 9097 >EU580560,A/Anas querquedula/Kyrgyzstan/1047/1987,1987/10/,Kyrgyzstan,H4N6,Avian,5
--------------segment 6--------------------------
  14    2 1413  204 >KJ413836,A/breeder duck/Korea/Gochang1/2014,2014/01/16,South Korea,H5N8,Avian,6
  56    8 1413  208 >KJ476674,A/duck/Zhejiang/6D18/2013,2013/12/14,China,H5N8,Avian,6
  63    9 1413  207 >KJ476673,A/duck/Zhejiang/W24/2013,2013/11/14,China,H5N8,Avian,6
 129   18 1394  161 >JQ973696,A/duck/Jiangsu/k1203/2010,2010/12/05,China,H5N8,Avian,6
 191   27 1413  205 >KJ413844,A/broiler duck/Korea/Buan2/2014,2014/01/17,South Korea,H5N8,Avian,6
 191   27 1413  206 >KJ413852,A/baikal teal/Korea/Donglim3/2014,2014/01/17,South Korea,H5N8,Avian,6
 212   30 1413   14 >AB932558,A/chicken/kumamoto/1-7/2014,2014/04/13,Japan,H5N8,Avian,6
 516   73 1413  192 >KF667707,A/common shelduck/Mongolia/2185/2011,2011/10/09,Mongolia,H3N8,Avian,6
 530   75 1413  106 >EU429700,A/duck/Eastern China/90/2004,2004//,China,H3N8,Avian,6
1054  149 1413   23 >CY014648,A/duck/Ukraine/1/1963,1963/12/12,Ukraine,H3N8,Avian,6
1067  144 1349   46 >CY060208,A/mallard/Netherlands/10/1999,1999/10/11,Netherlands,H1N8,Avian,6
1146  162 1413    4 >AB289332,A/duck/Hong Kong/438/1977,1977//,Hong Kong,H4N8,Avian,6
1153  163 1413   87 >CY185467,A/common Teal/Republic of Georgia/1/2011,2011/09/19,Georgia,H3N8,Avian,6
1153  163 1413  136 >HM144724,A/duck/Hunan/3748/2004,2004//,China,H6N8,Avian,6
1153  163 1413  209 >L06572,A/duck/Burjatia/652/1988,1988//,Russia,H3N8,Avian,6
1188  168 1413   36 >CY041340,A/common eider/Netherlands/1/2006,2006//,Netherlands,H3N8,Avian,6
1192   60  503  132 >GU052862,A/turkey/Ireland/?/1983,1983//,Ireland,H5N8,Avian,6
----------segment 7------------- 
  10    1  982 13450 >KJ413837,A/breeder duck/Korea/Gochang1/2014,2014/01/16,South Korea,H5N8,Avian,7
  10    1  982 13453 >KJ476675,A/duck/Zhejiang/W24/2013,2013/11/14,China,H5N8,Avian,7
  20    2  982 13454 >KJ476676,A/duck/Zhejiang/6D18/2013,2013/12/14,China,H5N8,Avian,7
  71    7  982 12118 >JQ973697,A/duck/Jiangsu/k1203/2010,2010/12/05,China,H5N8,Avian,7
 131    5  379 11710 >HQ200566,A/chicken/Cambodia/047LC4/2005,2005/03/24,Cambodia,H5N1,Avian,7
 132   13  982 3671 >CY091638,A/duck/Guangdong/wy19/2008,2008/06/06,China,H5N5,Avian,7
 185    2  108 11619 >HM355907,A/veery/Washington/CTR-AIV20/2006,2006/07/04,USA,,Avian,7
 196    2  102 11629 >HM355917,A/Swainson's thrush/Washington/CTR-AIV30/2006,2006/08/06,USA,,Avian,7
 210   16  760  919 >AY585398,A/duck/Guangxi/50/2001,2001//,China,H5N1,Avian,7
 236   18  760  918 >AY585397,A/duck/Zhejiang/52/2000,2000//,China,H5N1,Avian,7
----------segment 8------------- 
  23    2  838 7921 >KJ413838,A/breeder duck/Korea/Gochang1/2014,2014/01/16,South Korea,H5N8,Avian,8
  35    3  838 7924 >KJ476677,A/duck/Zhejiang/W24/2013,2013/11/14,China,H5N8,Avian,8
  71    6  838 7925 >KJ476678,A/duck/Zhejiang/6D18/2013,2013/12/14,China,H5N8,Avian,8
 178   15  838 1664 >CY079271,A/avian/Japan/8KI0068/2008,2008/10/08,Japan,H3N6,Avian,8
 178   15  838 7001 >JN244252,A/wild bird/Korea/A72/2010,2010/04/,South Korea,H7N7,Avian,8
 178   15  838 7570 >KF260019,A/duck/Jiangxi/21714/2011,2011//,China,H11N9,Avian,8
 178   15  838 7927 >KJ525978,A/duck/Thailand/CU-12943C/2013,2013/01/23,Thailand,H11N9,Avian,8
 184    6  325 7375 >KC599316,A/mallard/Czech Republic/15902-23K/2009,2009/09/30,Czech Republic,H6N2,Avian,8
 190   16  838 1661 >CY079215,A/avian/Japan/8KI0195/2008,2008/10/08,Japan,H6N8,Avian,8
 190   16  838 2262 >CY109654,A/duck/Guizhou/1560/2007,2007/03/,China,H6N8,Avian,8
 190   16  838 6098 >GQ907330,A/red crested pochard/Mongolia/1915/2006,2006/09/19,Mongolia,H3N6,Avian,8
 190   16  838 6759 >HM145056,A/duck/Fujian/12035/2005,2005//,China,H6N6,Avian,8
 193    7  361   23 >AB280940,A/swan/Shimane/42/1999,1999//,Japan,H7N8,Avian,8

Code:

>Index/h5n8g1b,0-15669

----------segment 1------------- 
   8    2 2280 12770 >KJ413839,A/broiler duck/Korea/Buan2/2014,2014/01/17,South Korea,H5N8,Avian,1
   8    2 2280 12771 >KJ413847,A/baikal teal/Korea/Donglim3/2014,2014/01/17,South Korea,H5N8,Avian,1
  13    3 2280  447 >AB932553,A/chicken/kumamoto/1-7/2014,2014/04/13,Japan,H5N8,Avian,1
 119   27 2266 11605 >JQ973691,A/duck/Jiangsu/k1203/2010,2010/12/05,China,H5N8,Avian,1
 122   28 2280 11782 >JX534562,A/wild duck/Shandong/628/2011,2011/04/14,China,H5N1,Avian,1
 149   34 2280 11776 >JX507352,A/duck/Jiangsu/m234/2012,2012/01/18,China,H5N2,Avian,1
 214   49 2280 3667 >CY091624,A/duck/Guangdong/wy11/2008,2008/06/06,China,H5N5,Avian,1
 456  104 2278 11333 >JN029547,A/whooper swan/Mongolia/1-14/2007,2007/09/,Mongolia,H3N8,Avian,1
 461  103 2231 9154 >EF597476,A/migratory duck/Hong Kong/MP206/2004,2004//,Hong Kong,H5N3,Avian,1
 498  111 2228 10799 >GU396983,A/wild duck/Taiwan/WB2/1998,1998/09/,Taiwan,H4N6,Avian,1
 521  119 2280 11312 >JF965038,A/duck/Eastern China/50/2002,2002/08/,China,H6N8,Avian,1
 521  119 2280 3000 >CY049777,A/garganey/Altai/1216/2007,2007/09/,Russia,H3N6,Avian,1
----------segment 2------------- 
   4    1 2274 12709 >KJ413848,A/baikal teal/Korea/Donglim3/2014,2014/01/17,South Korea,H5N8,Avian,2
  13    3 2274 12708 >KJ413840,A/broiler duck/Korea/Buan2/2014,2014/01/17,South Korea,H5N8,Avian,2
  17    4 2274  398 >AB932554,A/chicken/kumamoto/1-7/2014,2014/04/13,Japan,H5N8,Avian,2
 140   32 2274 11854 >KC282877,A/duck/Jiangsu/1-15/2011,2011/01/12,China,H4N2,Avian,2
 153   35 2274 11475 >JQ041393,A/duck/Eastern China/1111/2011,2011/01/,China,H5N2,Avian,2
 206   47 2274 11476 >JQ041394,A/goose/Eastern China/1112/2011,2011/01/,China,H5N2,Avian,2
 219   50 2274 10759 >GU727651,A/duck/Eastern China/008/2008,2008/12/15,China,H5N5,Avian,2
 326   26  797 9247 >EU301401,A/aquatic bird/Korea/CN-1/2004,2004//,South Korea,H3N6,Avian,2
 344    6  174 9781 >FJ985249,A/mallard/France/710/2002,2002/03/,France,H1N2,Avian,2
 395   90 2274   58 >AB302086,A/duck/Mongolia/54/2001,2001//,Mongolia,H5N2,Avian,2
 532  121 2274 3002 >CY060239,A/mallard/Netherlands/1/1999,1999/10/04,Netherlands,H4N6,Avian,2
----------segment 3------------- 
   0    0 2151 12679 >KJ413849,A/baikal teal/Korea/Donglim3/2014,2014/01/17,South Korea,H5N8,Avian,3
   9    2 2151 12678 >KJ413841,A/broiler duck/Korea/Buan2/2014,2014/01/17,South Korea,H5N8,Avian,3
  37    8 2151  401 >AB932555,A/chicken/kumamoto/1-7/2014,2014/04/13,Japan,H5N8,Avian,3
 153   33 2151 11880 >KC282878,A/duck/Jiangsu/1-15/2011,2011/01/12,China,H4N2,Avian,3
 167   36 2151 11524 >JQ041397,A/duck/Eastern China/1111/2011,2011/01/,China,H5N2,Avian,3
 227   49 2151 10815 >GU727668,A/duck/Eastern China/108/2008,2008/12/15,China,H5N1,Avian,3
 227   49 2151 11525 >JQ041398,A/goose/Eastern China/1112/2011,2011/01/,China,H5N2,Avian,3
 246   53 2151 10814 >GU727660,A/duck/Eastern China/031/2009,2009/01/15,China,H5N5,Avian,3
 264   57 2151 11588 >JQ973677,A/quail/Jiangsu/k0104/2010,2010/01/08,China,H5N5,Avian,3
 357   77 2151 9362 >EU329176,A/wild duck/Hunan/021/2005,2005//,China,H5N1,Avian,3
----------segment 4------------- 
  11    2 1704 4514 >KJ413842,A/broiler duck/Korea/Buan2/2014,2014/01/17,South Korea,H5N8,Avian,4
  17    3 1704  306 >AB932556,A/chicken/kumamoto/1-7/2014,2014/04/13,Japan,H5N8,Avian,4
  23    4 1704 4515 >KJ413850,A/baikal teal/Korea/Donglim3/2014,2014/01/17,South Korea,H5N8,Avian,4
 258   44 1704 4316 >JX534565,A/wild duck/Shandong/628/2011,2011/04/14,China,H5N1,Avian,4
 264   45 1704 4264 >JQ973694,A/duck/Jiangsu/k1203/2010,2010/12/05,China,H5N8,Avian,4
 299   51 1704 4310 >JX507355,A/duck/Jiangsu/m234/2012,2012/01/18,China,H5N2,Avian,4
 305   52 1704 4169 >JQ041402,A/goose/Eastern China/1112/2011,2011/01/,China,H5N2,Avian,4
 322   55 1704 4168 >JQ041401,A/duck/Eastern China/1111/2011,2011/01/,China,H5N2,Avian,4
 334   57 1704 4513 >KJ413834,A/breeder duck/Korea/Gochang1/2014,2014/01/16,South Korea,H5N8,Avian,4
 363   62 1704 4519 >KJ476670,A/duck/Zhejiang/6D18/2013,2013/12/14,China,H5N8,Avian,4
 369   63 1704 1219 >CY091635,A/duck/Guangdong/wy19/2008,2008/06/06,China,H5N5,Avian,4
 491   15  305  491 >AY534914,A/chicken/Thailand/KHHF/4NP25/2004,2004//,Thailand,H5N1,Avian,4
 577   46  796 2521 >EF614305,A/swan/Romania/RO-AI-007/CT/2005,2005//,Romania,H5N1,Avian,4
 590   97 1644 1949 >DQ992790,A/duck/Hunan/324/2006,2006//,China,H5N1,Avian,4
 608  103 1692 1903 >DQ992744,A/duck/Guangxi/288/2006,2006//,China,H5N1,Avian,4
 611  104 1701 2739 >EU329177,A/wild duck/Hunan/021/2005,2005//,China,H5N1,Avian,4
 614   14  228  561 >AY590572,A/crow/Thailand/CU-KAF3/2004,2004//,Thailand,H5N1,Avian,4
 681  113 1659 1986 >DQ992827,A/duck/Fujian/11311/2005,2005//,China,H5N1,Avian,4
 681  116 1701  488 >AY518362,A/duck/China/E319-2/03,2003//,China,H5N1,Avian,4
----------segment 5------------- 
   6    1 1497  407 >AB932557,A/chicken/kumamoto/1-7/2014,2014/04/13,Japan,H5N8,Avian,5
  13    2 1497 12387 >KJ413851,A/baikal teal/Korea/Donglim3/2014,2014/01/17,South Korea,H5N8,Avian,5
  20    3 1497 12386 >KJ413843,A/broiler duck/Korea/Buan2/2014,2014/01/17,South Korea,H5N8,Avian,5
  93   14 1497 11405 >JX534550,A/wild duck/Shandong/1/2011,2011/04/12,China,H5N1,Avian,5
 100   15 1497 11401 >JX507356,A/duck/Jiangsu/m234/2012,2012/01/18,China,H5N2,Avian,5
 106   16 1497 11407 >JX534566,A/wild duck/Shandong/628/2011,2011/04/14,China,H5N1,Avian,5
 128   19 1479 11258 >JQ973695,A/duck/Jiangsu/k1203/2010,2010/12/05,China,H5N8,Avian,5
 207   31 1497 12385 >KJ413835,A/breeder duck/Korea/Gochang1/2014,2014/01/16,South Korea,H5N8,Avian,5
 220   33 1497 12389 >KJ476672,A/duck/Zhejiang/6D18/2013,2013/12/14,China,H5N8,Avian,5
 240   36 1497 12388 >KJ476671,A/duck/Zhejiang/W24/2013,2013/11/14,China,H5N8,Avian,5
 394   59 1497 3162 >CY091628,A/duck/Guangdong/wy11/2008,2008/06/06,China,H5N5,Avian,5
 440   66 1497 10504 >HM145081,A/duck/Shantou/728/2001,2001//,China,H6N2,Avian,5
 449   43  957  539 >AF523426,A/Duck/Shantou/2030/00,2000//,China,H9N1,Avian,5
 477   19  398 9097 >EU580560,A/Anas querquedula/Kyrgyzstan/1047/1987,1987/10/,Kyrgyzstan,H4N6,Avian,5
 507   76 1497  561 >AJ427298,A/aquatic bird/Hong Kong/399/99,1999//,Hong Kong,H3N8,Avian,5
 574   86 1497 1121 >CY005395,A/mallard/Astrakhan/244/1982,1982//,Russia,H14N6,Avian,5
----------segment 6------------- 
   0    0 1413  182 >KJ413844,A/broiler duck/Korea/Buan2/2014,2014/01/17,South Korea,H5N8,Avian,6
   0    0 1413  183 >KJ413852,A/baikal teal/Korea/Donglim3/2014,2014/01/17,South Korea,H5N8,Avian,6
  21    3 1413   14 >AB932558,A/chicken/kumamoto/1-7/2014,2014/04/13,Japan,H5N8,Avian,6
 186   26 1394  142 >JQ973696,A/duck/Jiangsu/k1203/2010,2010/12/05,China,H5N8,Avian,6
 191   27 1413  185 >KJ476674,A/duck/Zhejiang/6D18/2013,2013/12/14,China,H5N8,Avian,6
 198   28 1413  184 >KJ476673,A/duck/Zhejiang/W24/2013,2013/11/14,China,H5N8,Avian,6
 205   29 1413  181 >KJ413836,A/breeder duck/Korea/Gochang1/2014,2014/01/16,South Korea,H5N8,Avian,6
 559   79 1413  169 >KF667707,A/common shelduck/Mongolia/2185/2011,2011/10/09,Mongolia,H3N8,Avian,6
 573   81 1413   90 >EU429700,A/duck/Eastern China/90/2004,2004//,China,H3N8,Avian,6
1045  141 1349   45 >CY060208,A/mallard/Netherlands/10/1999,1999/10/11,Netherlands,H1N8,Avian,6
1082  153 1413  189 >L06576,A/duck/Ukraine/1/1963,1963//,Ukraine,H3N8,Avian,6
1096  155 1413   78 >CY184634,A/mallard/Sweden/2823/2003,2003/05/25,Sweden,H10N8,Avian,6
1167  165 1413   79 >CY185467,A/common Teal/Republic of Georgia/1/2011,2011/09/19,Georgia,H3N8,Avian,6
1196  169 1413    4 >AB289332,A/duck/Hong Kong/438/1977,1977//,Hong Kong,H4N8,Avian,6
1196  169 1413  186 >L06572,A/duck/Burjatia/652/1988,1988//,Russia,H3N8,Avian,6
1210  171 1413  102 >EU559258,A/duck/Hubei/126/1985,1985//,China,H7N8,Avian,6
1245  176 1413    2 >AB275285,A/duck/Hokkaido/8/1980,1980//,Japan,H3N8,Avian,6
1245  176 1413   23 >CY014704,A/duck/Chabarovsk/1610/1972 ,1972//,Russia,H3N8,Avian,6
1252  177 1413  188 >L06574,A/duck/Hokkaido/8/1980,1980//,Japan,H3N8,Avian,6
1302  184 1413   20 >CY014631,A/red-necked stint/Australia/4189/1980,1980/10/25,Australia,H4N8,Avian,6
1316  186 1413   56 >CY087762,A/shearwater/Australia/2/1972,1972/06/11,Australia,H10N8,Avian,6
1323  187 1413   57 >CY087834,A/quail/Italy/1117/1965,1965/06/11,Italy,H10N8,Avian,6
1330  188 1413    8 >AB569505,A/goose/Zambia/05/2008,2008/07/,Zambia,H3N8,Avian,6
----------segment 7------------- 
   0    0  982  486 >AB932559,A/chicken/kumamoto/1-7/2014,2014/04/13,Japan,H5N8,Avian,7
   0    0  982 13451 >KJ413845,A/broiler duck/Korea/Buan2/2014,2014/01/17,South Korea,H5N8,Avian,7
   0    0  982 13452 >KJ413853,A/baikal teal/Korea/Donglim3/2014,2014/01/17,South Korea,H5N8,Avian,7
  91    9  982 12055 >JQ041413,A/duck/Eastern China/1111/2011,2011/01/,China,H5N2,Avian,7
  91    9  982 12473 >KC282882,A/duck/Jiangsu/1-15/2011,2011/01/12,China,H4N2,Avian,7
 173   17  982 12339 >JX534568,A/wild duck/Shandong/628/2011,2011/04/14,China,H5N1,Avian,7
 183   18  982 11243 >GU727656,A/duck/Eastern China/008/2008,2008/12/15,China,H5N5,Avian,7
 254   25  982 9191 >EF124162,A/chicken/Guiyang/3923/2005,2005//,China,H5N1,Avian,7
 274   27  982 9013 >DQ997409,A/duck/Zhejiang/bj/2002,2002//,China,H5N1,Avian,7
 275   27  981 2091 >CY029317,A/duck/Hunan/533/2004,2004//,China,H5N1,Avian,7
----------segment 8------------- 
   0    0  838 7922 >KJ413846,A/broiler duck/Korea/Buan2/2014,2014/01/17,South Korea,H5N8,Avian,8
   0    0  838 7923 >KJ413854,A/baikal teal/Korea/Donglim3/2014,2014/01/17,South Korea,H5N8,Avian,8
  23    2  838  187 >AB932560,A/chicken/kumamoto/1-7/2014,2014/04/13,Japan,H5N8,Avian,8
 119   10  838 7114 >JQ041417,A/duck/Eastern China/1111/2011,2011/01/,China,H5N2,Avian,8
 131   11  838 7343 >KC282883,A/duck/Jiangsu/1-15/2011,2011/01/12,China,H4N2,Avian,8
 143   12  838 7115 >JQ041418,A/goose/Eastern China/1112/2011,2011/01/,China,H5N2,Avian,8
 214   18  838 7264 >JX534569,A/wild duck/Shandong/628/2011,2011/04/14,China,H5N1,Avian,8
 262   22  838 7262 >JX507359,A/duck/Jiangsu/m234/2012,2012/01/18,China,H5N2,Avian,8
 364   19  521  356 >AY180605,A/Duck/Nanchang/3-090/2000,2000//,China,H2N9,Avian,8
 372   25  671 5272 >DQ408520,A/ostrich/South Africa/KK98/98,1998//,South Africa,H6N8,Avian,8
 373   31  830 5305 >DQ787810,A/duck/Primorie/3691/02,2002//,Russia,H12N2,Avian,8
 381   32  838  685 >CY005497,A/duck/Nanchang/1904/1992,1992//,China,H7N1,Avian,8
 381   32  838 8039 >U49493,A/duck/Nanchang/1944/1993,1993//,China,H7N4,Avian,8
 382   23  602 6423 >GU052965,A/softbill/California/33445-136/1992,1992//,USA,H7N1,Avian,8
 393   33  838 1374 >CY060202,A/greylag goose/Netherlands/4/1999,1999/03/01,Netherlands,H6N1,Avian,8

comparing with H5N1-strains:

Code:

  1 >Index/h5n8g1a,0-15669                        2280 2274 2151 1704 1497 1413  982  838   
  2:128, 60, 37, 33, 21, 19, 29, 57   Index/h5n8g1b,0-15669 
 32: 85, 84,100, 71, 79,409, 74, 40   A/Ck/Hubei/wl/97(H5N1) 
 19: 39, 74, 96, 71, 82,409, 45, 46   A/Ck/HK/31.2/2002,X1 
  5:125, 88, 59, 58, 84,406, 27, 52   Index China03 
 27:124, 92, 35, 45, 82,405, 24, 49   Index Fujian 
 17:123, 89, 88, 74, 71,416, 27, 46   A/teal/China/2978.1/2002,W 
 29:124, 88, 83, 65, 82,405, 25, 48   Index_S(Hubei 1997) 
 35:113, 84,103, 72, 72,403, 73, 40   A/Ck/Hubei/wj/97(H5N1) 
  4:123, 90, 85, 64, 83,406, 25, 46   A/Ck/Henan/16/04(H5N1) 

  2 >Index/h5n8g1b,0-15669                        2280 2277 2151 1704 1497 1413  982  838   
  1:128, 60, 37, 33, 21, 19, 29, 57   Index/h5n8g1a,0-15669 
  4: 54, 92, 86, 77, 85,407, 29, 52   A/Ck/Henan/16/04(H5N1) 
 20: 68, 73, 89, 85, 93,410, 89, 50   A/Ck/HK/37.4/2002,X2 
 27: 56, 95, 37, 60, 83,406, 26, 57   Index Fujian 
 34: 70, 91, 93, 98, 75,430, 39, 78   A/Ck/Hubei/wm/97(H5N1) 
 29: 56, 90, 84, 79, 83,405, 29, 54   Index_S(Hubei 1997) 
 18: 82, 77, 98, 83, 84,407, 51, 51   A/Gf/HK/38/2002,X0 
  5: 56, 90, 64, 71, 86,407, 31, 55   Index China03

Guangdong,H5N5,2008 viruses:
http://www.ncbi.nlm.nih.gov/pubmed/24080350

Code:

  3 >Index/h5n8g1a,0-15669                                               2280 2274 2151 1704 1497 1413  982  838   
  5:125, 92, 35, 46, 82,423, 24, 63   Index Fujian 
  6:128, 95, 92, 67, 88,421, 31, 59   Index Qinghai 
  7:126, 89, 88, 64, 82,420, 27, 53   A/avian/Indonesia-Index(H5N1) 
  1:123, 49, 19, 22, 32,330, 14, 70   CY091624,A/duck/Guangdong/wy11/2008,2008/06/06,China,H5N5,Avian,1 
  2:125, 50, 18, 20, 32,331, 13, 69   CY091632,A/duck/Guangdong/wy19/2008,2008/06/06,China,H5N5,Avian,1 
  8:122, 48, 23, 31, 36,327, 16, 74   CY091640,A/duck/Guangdong/wy24/2008,2008/06/06,China,H5N5,Avian,1 
  3:  0,  0,  0,  0,  0,  0,  0,  0   Index/h5n8g1a,0-15669 
  4:128, 60, 37, 33, 21, 19, 29, 57   Index/h5n8g1b,0-15669 

  4 >Index/h5n8g1b,0-15669                                               2280 2274 2151 1704 1497 1413  982  838   
  5: 56, 95, 37, 61, 83,423, 26, 71   Index Fujian 
  6: 63, 93, 92, 80, 90,421, 37, 65   Index Qinghai 
  7: 61, 91, 90, 77, 84,421, 31, 57   A/avian/Indonesia-Index(H5N1) 
  1: 21, 29, 28, 39, 39,329, 25, 80   CY091624,A/duck/Guangdong/wy11/2008,2008/06/06,China,H5N5,Avian,1 
  2: 22, 30, 29, 36, 39,330, 26, 78   CY091632,A/duck/Guangdong/wy19/2008,2008/06/06,China,H5N5,Avian,1 
  8: 28, 31, 26, 46, 42,329, 25, 83   CY091640,A/duck/Guangdong/wy24/2008,2008/06/06,China,H5N5,Avian,1 
  3:128, 60, 37, 33, 21, 19, 29, 57   Index/h5n8g1a,0-15669 
  4:  0,  0,  0,  0,  0,  0,  0,  0   Index/h5n8g1b,0-15669 


  5: 42, 89, 22, 30, 76,436, 17, 23   Index Fujian 
  6: 51, 89, 82, 52, 80,430, 28, 46   Index Qinghai 
  7: 49, 86, 79, 48, 78,431, 22, 37   A/avian/Indonesia-Index(H5N1) 

  5: 44, 89, 19, 21, 77,434, 17, 33   Index Fujian 
  6: 53, 88, 82, 45, 81,429, 28, 54   Index Qinghai 
  7: 51, 85, 79, 40, 79,429, 22, 48   A/avian/Indonesia-Index(H5N1)

gsgs · Nov 19, 2014

Re: h5n8

there were no human cases in Korea earlier this year,
despite 13M poultry destroyed

in ferrets the virus was low symptomatic (interim results\
in mice less than H5N1

http://www.nature.com/emi/journal/v3/n10/full/emi201475a.html
http://vet.snu.ac.kr/eng/aavs/meeting/__icsFiles/afieldfile/2014/08/20/PS3.1-3KisoonKim.pdf (July,2014)

H5N8 has one amino acid less at the cleavage-site than H5N1.
(typically: the more the deadlier)

Code:

...RNSPL-RERRRKKR-GLF...,Fujian-H5N1
...RNSPQ-GERRRKKR-GLF...,Qinghai-H5N1 (Europa,2006)
...RNSPQ-RERRRKKR-GLF...,Indonesien-H5N1
...RNNPL-REKRRK-R-GLF...,Korea-H5N8-a (2 sequenzen)
...RNSPL-RERRRK-R-GLF...,Korea-H5N8-b  (34 Sequenzen)
...RNVPQ-KETR-----GLF...,low-pathogenic H5N1,A/teal/Germany/WV632/2005

number H5s at genbank by cleavage-site and year (1996,...,2014)

Code:

RERRRKKR,  2, 48,  1,  6, 17, 60, 60, 80,336,180,102, 53, 20,  1,  4,  0,  0,  0,  0
GERRRKKR,  0,  0,  0,  0,  3,  0,  0,  2,  4,109,599,254,211,117, 94, 44,  5,  1,  0
RESRRKKR,  0,  0,  0,  0,  0,  0,  0,  0,  0, 26, 83,106, 15,  2, 11,  0,  0,  0,  0
GEKRRKKR,  0,  0,  0,  0,  0,  0,  0,  0,  0,  0,  1,  2,  1,  1,  8, 75, 33, 30, 10
REGRRKKR,  0,  1,  0,  0,  3,  0,  0,  2,  5, 21, 17, 45,  8,  5, 26,  2,  1,  1,  0
REERRKKR,  0,  0,  0,  0,  0,  0,  0,  0,  0,  3,  2,  0,  0,  0,  0, 28, 15, 44,  0
 RERRRKR,  0,  0,  0,  0,  0,  2,  0,  2, 18,221,271,159, 65, 99, 87,155,110, 53, 82
 RERRKKR,  0,  0,  0,  0,  0,  1,  0, 14, 24, 51,  5,  0,  0,  0,  0,  0,  0,  0,  0
 REKRRKR,  0,  0,  0,  0,  0,  0,  0,  0,  0,  1,  0,  8,  6, 15,  1,  5,  3,  4,  2
    RETR,  5, 10,  9,  3, 27, 23, 63, 16, 33, 71,174, 99, 38, 48, 22, 48, 10, 34,  0
    KETR,  0,  5, 10,  1,  0,  0,  2,  4,  2, 13, 22,  2,  3,  1,  4,  0,  0,  0,  0
    RKTR,  0,  0,  0,  0,  0,  0,  0,  0,  0,  5, 18, 11,  3,  2,  1, 26, 22,  6,  0

it's the Fujian-strain from 2005, which already has 7aa at the cleavage-site
also Mongolia/2009

first with 7aa was A/Dk/HN/5806/2003(H5N1) and A/Dk/China/E319-2/2003(H5N1)

60 viruses got 8aa later, though. I.e. Vietnam 2009 , HK wild birds

http://en.wikipedia.org/wiki/Fujian_flu#A.2FFujian_.28H5N1.29
H5N8 has segments 3,4,7(,8?) from that Fujian-flu

====================================================

http://www.ncbi.nlm.nih.gov/nuccore/KJ476654
sh-9 , not yet available (gochang1-like , shanghai, dec 2013)

h5n8

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