tetano
Editor, Senior Moderator
Stud Health Technol Inform. 2010;159:215-26.
Grid-based International Network for Flu Observation (g-INFO).
Doan TT, Bernard A, Da-Costa AL, Bloch V, Le TH, Legre Y, Maigne L, Salzemann J, Sarramia D, Nguyen HQ, Breton V.
Institut de la Francophonie pour l'Informatique, L'?quipe Mod?lisation et Simulation Informatique, 42, Ta Quang Buu, Hanoi, Vietnam.
Abstract
The 2009 H1N1 outbreak has demonstrated that continuing vigilance, planning, and strong public health research capability are essential defenses against emerging health threats. Molecular epidemiology of influenza virus strains provides scientists with clues about the temporal and geographic evolution of the virus. In the present paper, researchers from France and Vietnam are proposing a global surveillance network based on grid technology: the goal is to federate influenza data servers and deploy automatically molecular epidemiology studies. A first prototype based on AMGA and the WISDOM Production Environment extracts daily from NCBI influenza H1N1 sequence data which are processed through a phylogenetic analysis pipeline deployed on EGEE and AuverGrid e-infrastructures. The analysis results are displayed on a web portal (http://g-info.healthgrid.org) for epidemiologists to monitor H1N1 pandemics.
PMID: 20543440 [PubMed - in process]
http://www.ncbi.nlm.nih.gov/pubmed/20543440
Grid-based International Network for Flu Observation (g-INFO).
Doan TT, Bernard A, Da-Costa AL, Bloch V, Le TH, Legre Y, Maigne L, Salzemann J, Sarramia D, Nguyen HQ, Breton V.
Institut de la Francophonie pour l'Informatique, L'?quipe Mod?lisation et Simulation Informatique, 42, Ta Quang Buu, Hanoi, Vietnam.
Abstract
The 2009 H1N1 outbreak has demonstrated that continuing vigilance, planning, and strong public health research capability are essential defenses against emerging health threats. Molecular epidemiology of influenza virus strains provides scientists with clues about the temporal and geographic evolution of the virus. In the present paper, researchers from France and Vietnam are proposing a global surveillance network based on grid technology: the goal is to federate influenza data servers and deploy automatically molecular epidemiology studies. A first prototype based on AMGA and the WISDOM Production Environment extracts daily from NCBI influenza H1N1 sequence data which are processed through a phylogenetic analysis pipeline deployed on EGEE and AuverGrid e-infrastructures. The analysis results are displayed on a web portal (http://g-info.healthgrid.org) for epidemiologists to monitor H1N1 pandemics.
PMID: 20543440 [PubMed - in process]
http://www.ncbi.nlm.nih.gov/pubmed/20543440