Genome Sequence of a Reassortant H5N1 Avian Influenza Virus Isolated from Domestic Green-Winged Teal

[tetano]

Genome Announc. 2013 Aug 15;1(4). pii: e00639-13. doi: 10.1128/genomeA.00639-13.
Genome Sequence of a Reassortant H5N1 Avian Influenza Virus Isolated from Domestic Green-Winged Teal.
Xiong C, Liu Q, Chen Q, Chen J.
Source

Center for Emerging Infectious Diseases, Wuhan Institute of Virology, Chinese Academy of Sciences, Wuhan, Hubei, China.
Abstract

An avian influenza virus strain, A/domestic green-winged teal/Hunan/3450/2006(H5N1) (DGW-T3450), was isolated from domestic green-winged teals. Genome analysis demonstrated that DGW-T3450 is a novel reassortant strain. The hemagglutinin (HA) and neuraminidase (NA) genes of this strain originated from H5N1 viruses circulating in poultry, while its remaining genes are derived from multiple ancestors, including viruses like those that infect wild birds.

PMID:
23950136
[PubMed]

http://www.ncbi.nlm.nih.gov/pubmed/23950136

 

[gsgs]

Re: Genome Sequence of a Reassortant H5N1 Avian Influenza Virus Isolated from Domestic Green-Winged Teal

7 years ago

  8: 28, 77, 54, 39, 61, 40, 53,275   A/Silky Ck/HK/SF189/2001,A                                           2207 2274 2147 1674 1497 1350  982  823
 18: 47, 47, 66, 44, 75, 49, 70,284   A/Ck/HK/37.4/2002,X2                                                 2271 2274 2081 1692 1497 1350  982  838
 25: 31, 84, 26,  9, 65, 11, 69,285   Index Fujian                                                         2280 2274 2151 1698 1497 1410  982  836
  5: 56, 71, 54, 45, 54, 40, 48, 26   A/Gs/Guangdong/1/1996,GsGd                                           2280 2274 2151 1698 1497 1410  982  838




 26 >A/domestic green-winged teal/Hunan/3450/2006,2006/03/16,China,H5N1   2280 2274 2151 1695 1497 1350  982  838   
  1: 31, 80, 54, 24, 64, 23, 67,277   A/Index-se9agbi.26                                                   2280 2274 2151 1698 1497 1350  982  823
  2: 29, 83, 54, 29, 64, 26, 68,279   A/Ck/Henan/16/04(H5N1)                                               2280 2274 2151 1698 1497 1350  982  823
  3: 31, 80, 28, 26, 66, 25, 70,276   Index China03                                                        2280 2274 2151 1698 1497 1350  982  823
  4: 38, 81, 61, 28, 65, 26, 66,282   A/avian/Indonesia-Index(H5N1)                                        2280 2274 2151 1698 1497 1350  982  823
  5: 56, 71, 54, 45, 54, 40, 48, 26   A/Gs/Guangdong/1/1996,GsGd                                           2280 2274 2151 1698 1497 1410  982  838
  6:137, 84,101, 49, 62,108, 63,284   A/Ck/HK/220/1997,GsGd                                                2015 2274 2148 1698 1497 1353  982  838
  7:130, 84,101, 48, 63,109, 64,281   A/HK/156/1997,GsGd                                                   2248 2274 2148 1698 1497 1353  982  838
  8: 28, 77, 54, 39, 61, 40, 53,275   A/Silky Ck/HK/SF189/2001,A                                           2207 2274 2147 1674 1497 1350  982  823
  9: 32, 78, 56, 38, 65, 70, 68,277   A/Ck/HK/YU562/2001,B                                                 2279 2273 2150 1696 1496 1409  982  823
 10: 30, 68, 54, 34, 56, 45, 63,279   A/Dk/HK/2986.1/2000,C                                                2277 2253 2148 1695 1494 1407  982  823
 11: 31, 68, 57, 38, 96, 48, 64,276   A/Ck/HK/FY150/2001,D                                                 2279 2273 2150 1696 1496 1409  982  823
 12: 30, 69, 56, 38, 68, 45, 65,275   A/Ck/HK/715.5/2001,E                                                 2226 2274 2147 1668 1497 1410  982  823
 13: 72, 85, 61, 28, 70, 29, 69,284   A/Gs/Guangxi/345/2005,G                                              2277 2271 2148 1686 1454 1323  982  811
 14: 35, 84, 29, 32, 68, 30, 72,277   A/Ck/ST/4231/2003,V                                                  2277 2274 2130 1688 1497 1350  981  823
 15: 67, 82, 59, 41, 46, 50, 66,280   A/teal/China/2978.1/2002,W                                           2280 2274 2130 1636 1497 1367  966  772
 16: 61, 51, 81, 42, 70, 51, 66,286   A/Gf/HK/38/2002,X0                                                   2208 2154 2151 1662 1497 1075  962  838
 17:111, 50, 82, 42, 69, 42, 65,284   A/Ck/HK/31.2/2002,X1                                                 2258 2273 2151 1692 1497 1350  982  838
 18: 47, 47, 66, 44, 75, 49, 70,284   A/Ck/HK/37.4/2002,X2                                                 2271 2274 2081 1692 1497 1350  982  838
 19: 48, 53, 62, 42, 68, 38, 65,288   A/SCk/HK/YU100/2002,X3                                               2274 2272 2151 1692 1497 1350  982  838
 20: 35, 82, 56, 44, 63, 31, 69,280   A/Ck/HK/96.1/2002,Y                                                  2277 2261 2148 1691 1497 1350  982  823
 21: 29, 82, 55, 37, 64, 30, 67,281   A/Ck/HK/YU22/2002,Z                                                  2280 2274 2151 1679 1497 1350  982  823
 22: 35, 83, 57, 34, 62, 54, 71,279   A/HK/212/2003,Z+                                                     2280 2274 2139 1644 1497 1407  982  823
 23: 40, 86, 65, 35, 66, 29, 72,275   Index Qinghai                                                        2280 2274 2151 1698 1497 1350  982  823
 24: 35, 84, 60, 34, 65, 35, 74,282   Index Vietnam                                                        2280 2274 2151 1698 1497 1350  982  823
 25: 31, 84, 26,  9, 65, 11, 69,285   Index Fujian                                                         2280 2274 2151 1698 1497 1410  982  836
 26:  0,  0,  0,  0,  0,  0,  0,  0   A/domestic green-winged teal/Hunan/3450/2006,2006/03/16,China,H5N1   2280 2274 2151 1695 1497 1350  982  838

 >A/domestic green-winged teal/Hunan/3450/2006,2006/03/16,China,H5N1
----------segment 1------------- 
  96   22 2280 7308 >A/duck/Guizhou/1088/2007,2007/02/,H6N2
----------segment 2------------- 
 118   27 2274 7261 >A/duck/Guizhou/2773/2006,2006/05/,H6N2
 286   64 2237 1786 >A/mallard/Italy/208/2000,2000//,H5N3
----------segment 3------------- 
  65   14 2151 7008 >A/duck/Guizhou/2773/2006,2006/05/,H6N2
  74   16 2151 4756 >A/aquatic bird/Korea/w74/2005,2005/11/,H5N2
----------segment 45------------- 
  23    4 1695  803 >A/chicken/Hubei/3002/2007,2007/01/29,H5N1,China
  41    7 1695  814 >A/chicken/Hunan/3157/2006,2006/11/30,H5N1,China
  88   15 1695 1136 >A/chicken/Sichuan/81/2005,2005//,H5N1,China
----------segment 5------------- 
  89   13 1460 4588 >A/wild duck/Korea/CW09/2005,2005/04/,South Korea,H1N1
 102   15 1460 4589 >A/wild duck/Korea/SH60/2004,2004/12/,South Korea,H1N1
 227   34 1497 4511 >A/pigeon/Nanchang/8-142/2000,2000/08/13,China,H3N6
----------segment 61------------- 
   7    1 1349 2466 >FJ784773,A/chicken/Hubei/3002/2007,2007/01/29,China,H5N1,6
  14    2 1349 2467 >FJ784774,A/chicken/Hunan/3157/2006,2006/11/30,China,H5N1,6
  74   10 1349 2812 >HM172167,A/chicken/Sichuan/81/2005,2005//,China,H5N1,6
----------segment 7------------- 
  30    3  982 8393 >GQ907327,A/red crested pochard/Mongolia/1915/2006,2006/09/19,Mongolia,H3N6,7
 132   13  982 3754 >CY100642,A/tufted duck/Mongolia/16/2004,2004/09/,Mongolia,H3N6,7
 152   15  982 7744 >EU580555,A/Anas querquedula/Astrakhan/3091/2002,2002/09/09,Russia,H4N8,7
----------segment 82------------- 
  59    5  838 1871 >EU580581,A/common tern/Buryatiya/1901/2000,2000//,Russia,H4N6,8