tetano
Editor, Senior Moderator
Front Pediatr
. 2025 Jun 27:13:1498197.
doi: 10.3389/fped.2025.1498197. eCollection 2025. Respiratory pathogens detected in children aged <5 years hospitalized with severe respiratory illness, South Africa, 2017
Malefu Moleleki[SUP] 1 2 [/SUP], Cayla Reddy[SUP] 1 2 [/SUP], Kedibone Ndlangisa[SUP] 1 2 [/SUP], Mignon du Plessis[SUP] 1 2 [/SUP], Orienka Hellferscee[SUP] 1 3 [/SUP], Omphe Mekgoe[SUP] 4 [/SUP], Sibongile Walaza[SUP] 1 5 [/SUP], Stefano Tempia[SUP] 1 5 6 [/SUP], Cheryl Cohen[SUP] 1 5 [/SUP], Anne von Gottberg[SUP] 1 2 [/SUP], Nicole Wolter[SUP] 1 2 [/SUP]
Affiliations
Introduction: The burden of morbidity and mortality of severe respiratory illness (SRI) remains disproportionately high among young children, and in low-and middle-income countries. We used a multi-pathogen respiratory PCR assay to detect pathogens in children aged <5 years hospitalized with SRI.
Methods: Prospective syndromic surveillance for SRI was performed at two sentinel hospitals in South Africa between January and December 2017. Nasopharyngeal aspirates and sputa were collected and tested using a real-time polymerase chain reaction based TaqMan Array Card (TAC) for the detection of 21 respiratory pathogens. Pathogen detection was compared by age group using the chi-squared test and seasonal frequency analysed.
Results: From January through December 2017, 361 children were enrolled and of these, 198 cases with sufficient specimen volume were included in this study. Overall, 189/198 (95%) of the children tested positive for at least one pathogen. Common viruses identified included rhinovirus (65/198; 33%), respiratory syncytial virus (RSV) (54/198; 27%), adenovirus (34/198; 17%), and enterovirus (28/198; 14%). Common bacteria detected included Haemophilus influenzae (121/198; 61%), Streptococcus pneumoniae (114/198; 58%), Klebsiella pneumoniae (61/198; 31%), Staphylococcus aureus (52/198; 26%), and Acinetobacter baumannii (27/198; 14%).
Discussion: Bacterial detections were high in our study driven by the high detection of S. pneumoniae and H. influenzae. Co-detections of pathogens were common and require clinical evaluation to determine their relevance in clinical management. Further, given the high prevalence of RSV amongst children hospitalized with SRI, there is an urgent need for continued efforts towards access to maternal RSV vaccines and therapeutic interventions such as monoclonal antibodies particularly in low- and middle-income countries which experience the highest burden of RSV-associated disease.
Keywords: RSV; South Africa; TaqMan Array Card; childhood pneumonia; community-acquired pneumonia; respiratory pathogens; severe respiratory illness.
. 2025 Jun 27:13:1498197.
doi: 10.3389/fped.2025.1498197. eCollection 2025. Respiratory pathogens detected in children aged <5 years hospitalized with severe respiratory illness, South Africa, 2017
Malefu Moleleki[SUP] 1 2 [/SUP], Cayla Reddy[SUP] 1 2 [/SUP], Kedibone Ndlangisa[SUP] 1 2 [/SUP], Mignon du Plessis[SUP] 1 2 [/SUP], Orienka Hellferscee[SUP] 1 3 [/SUP], Omphe Mekgoe[SUP] 4 [/SUP], Sibongile Walaza[SUP] 1 5 [/SUP], Stefano Tempia[SUP] 1 5 6 [/SUP], Cheryl Cohen[SUP] 1 5 [/SUP], Anne von Gottberg[SUP] 1 2 [/SUP], Nicole Wolter[SUP] 1 2 [/SUP]
Affiliations
- PMID: 40656201
- PMCID: PMC12245838
- DOI: 10.3389/fped.2025.1498197
Introduction: The burden of morbidity and mortality of severe respiratory illness (SRI) remains disproportionately high among young children, and in low-and middle-income countries. We used a multi-pathogen respiratory PCR assay to detect pathogens in children aged <5 years hospitalized with SRI.
Methods: Prospective syndromic surveillance for SRI was performed at two sentinel hospitals in South Africa between January and December 2017. Nasopharyngeal aspirates and sputa were collected and tested using a real-time polymerase chain reaction based TaqMan Array Card (TAC) for the detection of 21 respiratory pathogens. Pathogen detection was compared by age group using the chi-squared test and seasonal frequency analysed.
Results: From January through December 2017, 361 children were enrolled and of these, 198 cases with sufficient specimen volume were included in this study. Overall, 189/198 (95%) of the children tested positive for at least one pathogen. Common viruses identified included rhinovirus (65/198; 33%), respiratory syncytial virus (RSV) (54/198; 27%), adenovirus (34/198; 17%), and enterovirus (28/198; 14%). Common bacteria detected included Haemophilus influenzae (121/198; 61%), Streptococcus pneumoniae (114/198; 58%), Klebsiella pneumoniae (61/198; 31%), Staphylococcus aureus (52/198; 26%), and Acinetobacter baumannii (27/198; 14%).
Discussion: Bacterial detections were high in our study driven by the high detection of S. pneumoniae and H. influenzae. Co-detections of pathogens were common and require clinical evaluation to determine their relevance in clinical management. Further, given the high prevalence of RSV amongst children hospitalized with SRI, there is an urgent need for continued efforts towards access to maternal RSV vaccines and therapeutic interventions such as monoclonal antibodies particularly in low- and middle-income countries which experience the highest burden of RSV-associated disease.
Keywords: RSV; South Africa; TaqMan Array Card; childhood pneumonia; community-acquired pneumonia; respiratory pathogens; severe respiratory illness.