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Flu Found Resistant to Main Antiviral Drug

Re: Flu Found Resistant to Main Antiviral Drug

CP is just over a year late in stating the obvious.
Here's a bit more info on why the ProMED commentary, over a year after the H274Y in H1N1 was reported in Norway was worthy of comment.

Tamiflu resistance had been reported previously in Japan, where usage had been widespread, and children had been given sub-optimal doses (which had been used at levels below recommendation).

The sub-optimal usage led to resistance in children, but the resistance was found in H1N1 and H3N2. Moreover, the resistance was linked to the emergence of alterations at multiple positions in each serotype.

Over a year ago, Norway announced that resistance levels of 67% had been observed, but all resistance was in H1N1, and all genetic changes were at position 274, which changed from H to Y (H274Y). This high level, coupled with the fact that Norway rarely uses Tamiflu, and the resistant H1N1 isolates were from patients not taking Tamiflu, led to a series of media reports on "baffled" flu researchers, as well as an accelerated review of influenza elsewhere.

It was soon clear that H274Y was widespread and not only was concentrated in H1N1, but was primarily in clade 2B (Brisbane), and was primarily in a specific clade 2B sub-clade. Other examples in H1N1 made it clear that there were multiple independent introductions, but the vast majority of cases evolved from the dominant sub-clade.

Thus, it was quite clear almost a year ago that the spread was not linked to usage, because virtually no cases had recently had Tamiflu, and the spread was not only at position, H274Y, in H1N1, but was largely linked to one particular sub-clade.

Moreover, that sub-clade not only became dominant in clade 2B, but clade 2B largely displaced clade 2C, which was widespread in Asia, leading to levels approaching 100% in H1N1 in most countries (China still has clade 2C in circulation, so H274Y levels there are about 30%).

Thus, the spread of Tamiflu resistance worldwide, and the increase to 100% is clearly not linked to Tamiflu usage. Last season the level in Japan was 3% even though Tamiflu usage was highest. This year Tamiflu usage has declined in Japan, and Relenza usage has increased, yet H274Y levels approached 100%, as clade 2B displaced clade 2C (which happened in virtually all northern Asian countries except China).

Therefore, ProMED's comments are rather late, because the lack of ANY reported resistance in H3N2 has been known for over a year, as has the absence of resistance in H1N1 at any position other than 274 (which is sometimes called 275).

Suggestions that the increase is due to recent Tamiflu usage and/or linked to traveling salesmen are curious, but not based on reported data, which could not be clearer.
 
Re: Flu Found Resistant to Main Antiviral Drug

why has H275Y become dominant now from initially ~20% to ~90% now ?

averag usage of Tamiflu in the whole country may not be the decisive number, but rather Tamiflu use in superspreaders, traveling people.
 
Re: Flu Found Resistant to Main Antiviral Drug

why has H275Y become dominant now from initially ~20% to ~90% now ?

averag usage of Tamiflu in the whole country may not be the decisive number, but rather Tamiflu use in superspreaders, traveling people.
Please. It went from 10% to 99% in the US for the same reason it went from 3% to 99% in Japan, and for the same reason it went to 99% throughout the northern hemisphere.

H274Y hitch-hiked onto H1N1 that was dominant and when it acquired A193T (along with one or two changes at positions 187, 189, 196) it spread world wide.

The Tamiflu use by ANYONE doesn't explain why it is only H1N1 and only at position 274. It also doesn't explain why the increase last year, and the bigger increase this year, although I must admit that traveling superspreaders is easily the most unusual explanation I have seen (based on the most data ignored).
 
Re: Flu Found Resistant to Main Antiviral Drug

why has H275Y become dominant now from initially ~20% to ~90% now ?

averag usage of Tamiflu in the whole country may not be the decisive number, but rather Tamiflu use in superspreaders, traveling people.
Here is another clue. H274Y is not limited to Kansas, where evolution has been banned.
 
Re: Flu Found Resistant to Main Antiviral Drug

the timely connection is remarkable.

Just after use of Amantadines became widespread we got resistance.
Same for Tamiflu.

It didn't happen all the years and decades before.
So how likely is it, that this is just coincidence ?

90 years of H1N1, time window of start of widespread
Tamiflu use ~2years (?) --> probabitlity 1:45

40 years of H3N2, time window for Amantane-resistance
again ~2years --> probability 1:20

together ~ 1:1000


compare with resistance of Bacteria to other drugs ! (I don't have data here)
 
Re: Flu Found Resistant to Main Antiviral Drug

the timely connection is remarkable.

Just after use of Amantadines became widespread we got resistance.
Same for Tamiflu.

It didn't happen all the years and decades before.
So how likely is it, that this is just coincidence ?

90 years of H1N1, time window of start of widespread
Tamiflu use ~2years (?) --> probabitlity 1:45

40 years of H3N2, time window for Amantane-resistance
again ~2years --> probability 1:20

together ~ 1:1000


compare with resistance of Bacteria to other drugs ! (I don't have data here)
As noted previously, the first seasonal flu with H274Y from a patient NOT taking Tamiflu was 2006 in China, right after it appeared in H5N1 in wild birds in Astrakhan. so I certainly would NOT rule out Tamiflu use for H5N1 in 2005/2006 as a precursor for H274Y in seasonal flu.

However, the spread to clade 1 and then the expansion in clade 2B is NOT linked to Tamiflu usage in humans.

The story is in the sequence, and it is VERY clear (and involves OBVIOUS recombination).
 
Re: Flu Found Resistant to Main Antiviral Drug

just we (and the scientific community) don't take you serious
when you start speaking in capitals and tale-phrases
about frequent single-nucleotide-recombination after all those years,
so why do you continue ?
 
Re: Flu Found Resistant to Main Antiviral Drug

just we (and the scientific community) don't take you serious
when you start speaking in capitals and tale-phrases
about frequent single-nucleotide-recombination after all those years,
so why do you continue ?
Actually, the CDC has recently acknowledged homologous recombination in influenza, and I received favorable comments from the scientific community on the pre-print describing the recombination and hitch-hiking

http://precedings.nature.com/documents/2832/version/1

No royal we's required (or requested).
 
Re: Flu Found Resistant to Main Antiviral Drug

BTW. , do you still claim that H275Y "jumped" from H5N1 to H1N1
in that paper ? It's not so easy to find.
 
Re: Flu Found Resistant to Main Antiviral Drug

BTW. , do you still claim that H275Y "jumped" from H5N1 to H1N1
in that paper ? It's not so easy to find.
No the paper shows it jumped from clade 2C to 1 to 2B and involved multiple introductions (in multiple sub-clades) prior to hooking up with A193T, which is now in virtually ALL H1N1 with H274Y.

In addition most of the key acquisitions in 2B came from 2C, including three consecutive polymorphisms in NA (representing OBVIOUS homologous recombination).
 
Re: Flu Found Resistant to Main Antiviral Drug

ECDC. Monitoring of Influenza antiviral resistance in EU during 2008-09 season (Updated at March 26 2009)

Monitoring of Influenza antiviral resistance in EU during 2008-09 season

[Full page at this LINK. EDITED.]

Monitoring of antiviral resistance in EU for the season 2008-09 is currently ongoing.

The coordinators of The Community Network of Reference Laboratories for Human Influenza in Europe (CNRL), routinely collect, analyze and disseminate information on antiviral resistance from Influenza viruses isolated from 25 European (European Union, EEA/EFTA) countries.

The analysis of resistance against Neuraminidase Inhibitors and Adamantanes is done by measuring IC50 values and/or by genotyping of viruses for detection of known drug resistance mutations.

Summary information on antiviral resistance in EU will be published weekly in the EISS bulletin (also featured in the weekly ECDC influenza News)


<table style="width: auto;"><tbody><tr><td></td></tr><tr><td style="font-family: arial,sans-serif; font-size: 11px; text-align: right;">From TABLES</td></tr></tbody></table>

-
-----
 
Re: Flu Found Resistant to Main Antiviral Drug

AMNews: March 30, 2009. CDC warns of variances in influenza strains ... American Medical News

CDC warns of variances in influenza strains

The agency says physician awareness of flu strains circulating in their areas can help doctors make better choices about antivirals.


By Stephanie Stapleton, AM
News staff.
Posted March 30, 2009.

Centers for Disease Control and Prevention surveillance data for the week ending March 14 indicate that U.S. flu activity slightly decreased, with 30 states reporting widespread activity -- five fewer than in the previous report, and 18 more with regional activity.


Every year the CDC monitors the influenza virus, focusing on type A strains, H1N1 and H3N2, and type B strains. Since the beginning of the 2008-09 flu season, type A (H1N1) viruses have been dominant. But in recent reporting periods, several regions noted a higher relative proportion of influenza B viruses than at the national level or in other regions.

During the current season, the CDC also detected a significant increase in resistance to flu antivirals in one of the circulating strains.

The flu types and subtypes on this watch list are the viruses that circulate every year, though the proportion of strains is different, explained Nila Dharan, MD, an epidemic intelligence service officer in the CDC's Influenza Division. In addition, the prevalence and proportion can vary during the course of a flu season among communities and even within a specific community, according to CDC materials. These changes in type and subtype affect which antiviral drug will be most useful.

For physicians, this reality can be problematic when it comes to selecting flu antivirals. In an office setting, doctors can be limited as to what information tests will provide about a patient's influenza, Dr. Dharan said. A quick test can confirm the presence of the flu virus and sometimes will be sensitive enough to tell if it is a type A or B. "But that's it," she added.

The U.S. Strategic National Stockpile has 50 million courses of neuraminidase inhibitors to treat flu.

Dr. Dharan also noted, though, that a physician can make a more effective choice by being aware of what strains are circulating in his or her region or even more locally. But still, influenza treatment and chemoprophylaxis with antivirals is no easy proposition.

Two drug classes exist. The newer drugs are the neuraminidase inhibitors -- oseltamivir or Tamiflu and zanamivir or Relenza. The second category, the adamantanes, is made up of amantadine and rimantidine, which is marketed as Flumadine.

To date, 100% of H3N2 viruses have tested resistant to adamantanes. Though all flu strains remain susceptible to zanamivir, this drug has limitations that make it unsuitable for certain categories of patients at very high risk for flu complications. Meanwhile, the adamantanes are not active against type B strains. Emerging resistance to oseltamivir has added to this complexity.

"Before last year, there was very little resistance to oseltamivir among routinely tested viruses -- less than 1%," Dr. Dharan said. But during the 2007-08 flu season, this circumstance changed as resistance to this antiviral reached 12%. During that period, though, H1N1 viruses made up only about 19% of circulating strains. Therefore, the proportion of overall resistance among all influenza viruses tested was not high.

The figures for the 2008-09 season thus far reveal a different picture. Seventy-five percent of circulating strains have been type A and 24% have been type B. Unfortunately, the vast majority of type A viruses are H1N1, and about 98% of H1N1 viruses tested are resistant to oseltamivir.

Experts highlight specific messages from this situation.

100% of H3N2 viruses have tested resistant to adamantanes.

The current resistance situation makes the flu vaccine more important than ever, especially because the vaccine for the 2008-09 season and for that of 2009-10 protects against the strain of H1N1 that is resistant to oseltamivir.

Also, resistance to these antivirals functions differently than that of the usual understanding of antibacterial resistance. Because flu virus is constantly mutating and changing, it is "not necessarily the case that the resistance will persist next year," Dr. Dharan said.

In response to the growing resistance, though, the CDC updated the public health recommendations regarding the selection of antiviral drugs in December 2008. This document directs physicians to use a combination of oseltamivir and rimantadine. Zanamivir also remains an option when appropriate.

Antivirals and the national stockpile

Meanwhile, the current resistance profile warrants attention for reasons far from the day-in, day-out concerns of the exam room. These reasons are related to pandemic preparedness.

"We are watching this very carefully," said Robin Robinson, PhD, director of the Biomedical Advanced Research and Development Authority, which is part of the Dept. of Health and Human Services Office of the Asst. Secretary for Preparedness and Response.

Influenza antivirals have been considered by public health experts to be an important medical countermeasure in the event of a pandemic influenza epidemic. The U.S. Strategic National Stockpile, for instance, houses 50 million treatment courses of the neuraminidase inhibitors. Of this amount, the ratio is 80 to 20, oseltamivir to zanamivir. The stockpile also holds 2.8 million courses of rimantidine.

Officials have been monitoring the resistance situation for at least 18 months, Robinson said, and active deliberation continues. Compared with other countries, the U.S. oseltamivir-zanimivir ratio falls in the middle -- some nations have more oseltimivir, some less. "But no country has made a drastic change yet," he said. A decision about whether to take steps to adjust the stockpile's makeup could occur later this spring.

Robinson also noted that historical data show influenza viruses, even within the H1N1 subtype, can "burn out." In this case, the emergence of the resistant strains has not been driven by exposure to the drugs or, therefore, selective pressure.

Instead, it is a natural mutation.
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<cite cite="http://www.ama-assn.org/amednews/2009/03/30/hlsc0330.htm">AMNews: March 30, 2009. CDC warns of variances in influenza strains ... American Medical News</cite>
 
Re: Flu Found Resistant to Main Antiviral Drug

AMNews: March 30, 2009. CDC warns of variances in influenza strains ... American Medical News
CDC warns of variances in influenza strains

Robinson also noted that historical data show influenza viruses, even within the H1N1 subtype, can "burn out." In this case, the emergence of the resistant strains has not been driven by exposure to the drugs or, therefore, selective pressure.

Instead, it is a natural mutation.
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<CITE cite=http://www.ama-assn.org/amednews/2009/03/30/hlsc0330.htm>AMNews: March 30, 2009. CDC warns of variances in influenza strains ... American Medical News</CITE>
More hopes and dreams. H274Y has paired up with A193T and 1-2 RBD changes to form MULTIPLE major subclades, SIGNIFICANTLY limiting burnout.
 
Re: Flu Found Resistant to Main Antiviral Drug

ECDC. Monitoring of Influenza antiviral resistance in EU during 2008-09 season (4/2/2009)

Monitoring of Influenza antiviral resistance in EU during 2008-09 season

[Original text and table at this LINK. EDITED.]

Monitoring of antiviral resistance in EU for the season 2008-09 is currently ongoing. The coordinators of The Community Network of Reference Laboratories for Human Influenza in Europe (CNRL), routinely collect, analyze and disseminate information on antiviral resistance from Influenza viruses isolated from 25 European (European Union, EEA/EFTA) countries.

The analysis of resistance against Neuraminidase Inhibitors and Adamantanes is done by measuring IC50 values and/or by genotyping of viruses for detection of known drug resistance mutations.

Summary information on antiviral resistance in EU will be published weekly in the EISS bulletin (also featured in the weekly ECDC influenza News)


<table style="width: auto;"><tbody><tr><td></td></tr><tr><td style="font-family: arial,sans-serif; font-size: 11px; text-align: right;">From TABLES</td></tr></tbody></table>
 
Re: Flu Found Resistant to Main Antiviral Drug

ECDC. Monitoring of Influenza antiviral resistance in EU during 2008-09 season (updated at April 9th, 2009)

Monitoring of Influenza antiviral resistance in EU during 2008-09 season

[Full page at this LINK. EDITED.]

Monitoring of antiviral resistance in EU for the season 2008-09 is currently ongoing.

The coordinators of The Community Network of Reference Laboratories for Human Influenza in Europe (CNRL), routinely collect, analyze and disseminate information on antiviral resistance from Influenza viruses isolated from 25 European (European Union, EEA/EFTA) countries.

The analysis of resistance against Neuraminidase Inhibitors and Adamantanes is done by measuring IC50 values and/or by genotyping of viruses for detection of known drug resistance mutations.

Summary information on antiviral resistance in EU will be published weekly in the EISS bulletin (also featured in the weekly ECDC influenza News)


<table style="width: auto;"><tbody><tr><td></td></tr><tr><td style="font-family: arial,sans-serif; font-size: 11px; text-align: right;">
</td></tr></tbody></table>
 
Re: Flu Found Resistant to Main Antiviral Drug

ECDC. Monitoring of Influenza antiviral resistance in EU during 2008-09 season (updated at 4/15/2009)

Monitoring of Influenza antiviral resistance in EU during 2008-09 season

[Original text at this LINK. EDITED.]

Monitoring of antiviral resistance in EU for the season 2008-09 is currently ongoing.

The coordinators of The Community Network of Reference Laboratories for Human Influenza in Europe (CNRL), routinely collect, analyze and disseminate information on antiviral resistance from Influenza viruses isolated from 25 European (European Union, EEA/EFTA) countries.

The analysis of resistance against Neuraminidase Inhibitors and Adamantanes is done by measuring IC50 values and/or by genotyping of viruses for detection of known drug resistance mutations.

Summary information on antiviral resistance in EU will be published weekly in the EISS bulletin (also featured in the weekly ECDC influenza News)


<table style="width: auto;"><tbody><tr><td></td></tr><tr><td style="font-family: arial,sans-serif; font-size: 11px; text-align: right;">
</td></tr></tbody></table>
 
Re: Flu Found Resistant to Main Antiviral Drug

ECDC. Antivirals and Antiviral Resistant Influenza (updated at April 23, 2009)

Monitoring of Influenza antiviral resistance in EU during 2008-09 season

Monitoring of antiviral resistance in EU for the season 2008-09 is currently ongoing.

The coordinators of The Community Network of Reference Laboratories for Human Influenza in Europe (CNRL), routinely collect, analyze and disseminate information on antiviral resistance from Influenza viruses isolated from 25 European (European Union, EEA/EFTA) countries.

The analysis of resistance against Neuraminidase Inhibitors and Adamantanes is done by measuring IC50 values and/or by genotyping of viruses for detection of known drug resistance mutations.

Summary information on antiviral resistance in EU will be published weekly in the EISS bulletin (also featured in the weekly ECDC influenza News)



Antiviral resistance detected in influenza viruses from European countries during the season 2008/2009, by virus subtype and drug class (updated 22/04/2009) 1)


Virus type and subtype / Resistance to neuraminidase inhibitors: Oseltamivir: Isolates tested / Resistant (n (%)) / Zanamivir: Isolates tested / Resistant (n (%)) / Resistance to M2 inhibitors: Isolates tested / Resistant (n (%))

- A(H3N2) / 617 / 0 / ... / 581 / 0 / ... / 552 / 552 / (100)

- A(H1N1) / 234 / 230 / (98) / 234 / 0 / ... / 106 / 1 / (0)

- B / 73 / 0 / ... / 68 / 0 / ... / NA(2) / NA


1) The analysis of resistance against neuraminidase inhibitors (oseltamivir and zanamivir) and M2-ion channel inhibitors (amantadine and rimantadine) is done by measuring IC50 values and/or by genotyping of viruses for detection of known drug resistance mutations. As influenza A viruses are fully cross resistant for amantadine and rimantadine these are not shown separately in the table.

2) NA = not applicable as M2 inhibitors do not act on influenza B viruses.
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<cite cite="http://www.ecdc.europa.eu/en/Health_Topics/influenza/antivirals.aspx">Antivirals and Antiviral Resistant Influenza</cite>
 
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