sharon sanders
Editor-in-Chief & President
Re: Discussion - A Summary of Worldwide Human H5N1 Cases in 2011
comments from above blog:
Helen Branswell
Hi. I'd like to discuss this with you.
I don't know why you said Donald McNeil said incorrect when he said H5 has been "known" to have infected only about 600 people. That information is correct. It's also true that we shouldn't assume we've seen every case, as you point out. But the way McNeil worded the sentence covers that. He's not saying: H5N1 has only infected 600 people ever. He's saying: Only about 600 cases have come to light. Which is correct.You argue that H5 cases that have been diagnosed are probably a proportion of the denominator, not the full denominator. Everyone hopes that hunch is correct. But there have been a lot of small serology studies looking for undetected cases. They've been done in several countries. You cite one which found a very high 9 per cent seropositive rate. I hear that some in the flu world have concerns about the cutoff levels that group uses. But even if their finding is correct, many serosurveys have found no seropositives. Those that have found some evidence of conversion have seen it in <4% of people tested. You can find a list of ~18 studies that have been done in this document for a meeting of the WHO's Strategic Advisory Group of Experts on immunization in 2009. See page 20.http://www.who.int/immunization/sage/... Apparently there have been a few studies published since that are not included on this list but they don't change the general finding -- few asymptomatic cases are found.I am sure there are cases that are undetected and unreported. I'm sure that means both the numerator and the denominator are off. But is there evidence that the denominator may in fact be much larger than it currently appears, maybe as large as 9 % of the population of Asia? Seems like a stretch.
Cheers.
Helen Branswell
medical reporter
The Canadian Press
Like Reply
30 minutes ago F
profvrr, Virus guru, Professor of Microbiology, TWiV.tv host
McNeil was being misleading (maybe not deliberately - he did respond on this). Most of the readers would come away from his statement thinking that H5N1 has a 50% CFR. He should explain the caveats. I don't mean to single him out; most other writers bluntly state the CFR is 50%. We don't have the data to make that conclusion. The studies you cite aren't adequate to provide a denominator for the CFR. They were either done too long ago or in the wrong populations (e.g. not rural farmers where one would expect virus circulation). Even one percent of rural Asian population would be millions and that would significantly change the CFR. No one is adequately questioning the H5N1 CFR and that has lead us to the NSABB situation which is dreadful. It's not a stretch.
Like Reply
20 minutes ago in reply to Helen Branswell
josh powell
We should not fear the publication or methodology in regards to creating more virulent lab-based H5N1 or other influenza strains. What we should fear is the increased and easy access to technology considered to be advanced 10 years ago. One can order "kits" by mail that allow for easy cloning. One can order various cell lines that are easily expanded in tissue culture. Finally one can order custom-made oligos of 100 nucleotides or even entire custom plasmids of multiple kilobases from a variety of online companies. Stringent monitoring of where and who is using these kits, cell-lines and sequences is essential.
10-kb (sometimes less) is all that is needed to produce a very nasty and virulent virus. I do not worry about that scientist in a university or national lab "accidentally" releasing a lethal virus unknowingly in a way Hollywood likes to portray. I worry about the online availability of ordering this information and with a simple PCR machine someone could create a new virulent and lethal strain. Cloning in the last few years is now akin to homebrewing your own beer, this is very scary in the wrong hands.
Josh Powell
Oregon State University
Ph.D student
Like Reply
55 minutes ago
profvrr, Virus guru, Professor of Microbiology, TWiV.tv host
Nasty in lab is not necessarily nasty in people. The point is even good scientists don't know how to make a pathogen, even with techniques what they are today.
comments from above blog:
Helen Branswell
Hi. I'd like to discuss this with you.
I don't know why you said Donald McNeil said incorrect when he said H5 has been "known" to have infected only about 600 people. That information is correct. It's also true that we shouldn't assume we've seen every case, as you point out. But the way McNeil worded the sentence covers that. He's not saying: H5N1 has only infected 600 people ever. He's saying: Only about 600 cases have come to light. Which is correct.You argue that H5 cases that have been diagnosed are probably a proportion of the denominator, not the full denominator. Everyone hopes that hunch is correct. But there have been a lot of small serology studies looking for undetected cases. They've been done in several countries. You cite one which found a very high 9 per cent seropositive rate. I hear that some in the flu world have concerns about the cutoff levels that group uses. But even if their finding is correct, many serosurveys have found no seropositives. Those that have found some evidence of conversion have seen it in <4% of people tested. You can find a list of ~18 studies that have been done in this document for a meeting of the WHO's Strategic Advisory Group of Experts on immunization in 2009. See page 20.http://www.who.int/immunization/sage/... Apparently there have been a few studies published since that are not included on this list but they don't change the general finding -- few asymptomatic cases are found.I am sure there are cases that are undetected and unreported. I'm sure that means both the numerator and the denominator are off. But is there evidence that the denominator may in fact be much larger than it currently appears, maybe as large as 9 % of the population of Asia? Seems like a stretch.
Cheers.
Helen Branswell
medical reporter
The Canadian Press
Like Reply
30 minutes ago F
profvrr, Virus guru, Professor of Microbiology, TWiV.tv host
McNeil was being misleading (maybe not deliberately - he did respond on this). Most of the readers would come away from his statement thinking that H5N1 has a 50% CFR. He should explain the caveats. I don't mean to single him out; most other writers bluntly state the CFR is 50%. We don't have the data to make that conclusion. The studies you cite aren't adequate to provide a denominator for the CFR. They were either done too long ago or in the wrong populations (e.g. not rural farmers where one would expect virus circulation). Even one percent of rural Asian population would be millions and that would significantly change the CFR. No one is adequately questioning the H5N1 CFR and that has lead us to the NSABB situation which is dreadful. It's not a stretch.
Like Reply
20 minutes ago in reply to Helen Branswell
josh powell
We should not fear the publication or methodology in regards to creating more virulent lab-based H5N1 or other influenza strains. What we should fear is the increased and easy access to technology considered to be advanced 10 years ago. One can order "kits" by mail that allow for easy cloning. One can order various cell lines that are easily expanded in tissue culture. Finally one can order custom-made oligos of 100 nucleotides or even entire custom plasmids of multiple kilobases from a variety of online companies. Stringent monitoring of where and who is using these kits, cell-lines and sequences is essential.
10-kb (sometimes less) is all that is needed to produce a very nasty and virulent virus. I do not worry about that scientist in a university or national lab "accidentally" releasing a lethal virus unknowingly in a way Hollywood likes to portray. I worry about the online availability of ordering this information and with a simple PCR machine someone could create a new virulent and lethal strain. Cloning in the last few years is now akin to homebrewing your own beer, this is very scary in the wrong hands.
Josh Powell
Oregon State University
Ph.D student
Like Reply
55 minutes ago
profvrr, Virus guru, Professor of Microbiology, TWiV.tv host
Nasty in lab is not necessarily nasty in people. The point is even good scientists don't know how to make a pathogen, even with techniques what they are today.