Cocirculation of Influenza Viruses

[gsgs]

Re: Cocirculation of Influenza Viruses

16 ****** and only 2 H3N2 in Australia in week 26 !

seems that ****** is taking over now, after H3N2 and ******
were almost balanced until week 25



=======================================
edit 2013-02-02

China pic for the archive, how H3 and B survived the pandemic

 

[Tonka]

Re: Cocirculation of Influenza Viruses

You may find interest in this article. Guatemala.

http://www.prensalibre.com/noticias/Salud-atiende-mil-casos-infecciones_0_293370695.html

Spanish to English translation

06/07/1910 - 1:09 National

Health serves 452 000 cases of infection, the national network of hospitals and health centers have responded to more than 452 000 hours 655 new cases of acute respiratory infections, the National Epidemiology Center (NEC) provides up in registers.
BY CLAUDIA MENDEZ VILLASE?OR


According to information from the CNE, only during the week of 7 to 13 March this year there were 52 000 442 new cases of infections, including bronchitis, pneumonia, pharyngitis, laryngitis and influenza-like illness, so far in 2010.

In San Jos? del Golfo, remains the highest cumulative rate of patients, with 22 000 965 to date.

In 2009, during the same period there had been 20 000 498, according to the CNE.

Reported Roosevelt Hospital, last June, increasing 36 thousand patients, 412 more than in May when 624 were reported.

The San Juan de Dios, meanwhile, 965, in June.

Other records

The CNE also reported 445 suspected cases of influenza viruses (including H1N1 five, two human-H3-seasonal and 12 of a new virus).

 

[gsgs]

Re: Cocirculation of Influenza Viruses

I can't access

http://gamapserver.who.int/GlobalAtlas/include/function/doAutoLogin.asp?act=login


xttp://gamapserver.who.int/GlobalAtlas/include/function/doAutoLogin.asp?act=login

 

[Laidback Al]

Re: Cocirculation of Influenza Viruses

Seems to be a problem with the WHO map server.

I can not access http://gamapserver.who.int/maplibrary/pgrms/avian_influenza.aspx

 

[gsgs]

Re: Cocirculation of Influenza Viruses

I can get to that page now, but when I click on "Data query",
then I get another page as usual and I don't know how to select
the items from there


is someone registered there ? how to register ?

 

[mixin]

Re: Cocirculation of Influenza Viruses

gs,
At your link, when I click "data query" the page that comes up lists communicable diseases, human resources for health, etc.

If I click "Influenza virus monitoring", it takes me to a page that gives an option for "summary".. but the summary page is empty. Apparently they aren't monitoring flu right now?

Now, if I go to Malaria and click "summary", it gives me all the info from the groups: "Reported Malaria, Intervention coverage, Service Delivery".

If I just want "reported malaria", click it and choose what catagories I want, then "add to selected indicators". Then another page gives me the geographical choices. I select "all countries", "latest available data", then "view data" and it brings up the list I asked for.

I can't get IE to cooperate today so I'm not sure if using that browser will give different results.

 

[gsgs]

Re: Cocirculation of Influenza Viruses

yes, it was different some days ago.
You should get a page where you can select the different flu-types,
I can't see how to get this now.

 

[mixin]

Re: Cocirculation of Influenza Viruses

This is your other link; it gives "data query, interactive maps and map library". The "data query" shows: H1, H3, Pandemic H1N1, H5, etc

http://gamapserver.who.int/GlobalAtlas/home.asp

 

[gsgs]

Re: Cocirculation of Influenza Viruses

hmm, not for me. Not until some days ago.

I also tried firefox ...

choose H1,H3,pandemic H1,total A,total B
and mark the fiel above them
click "go" (the left go, not the right)
then chose all countries
then show data

that gives ~10 pages to be stored in one file


I'll try with another connection

 

[mixin]

Re: Cocirculation of Influenza Viruses

Now I can't get that link to bring up the flu info like it did yesterday. Maybe they're working on the site? I don't remember "Dynamic HIV Epifact sheet report" being listed yesterday; but maybe I just didn't notice it.

I'm using Opera and IE.

 

[gsgs]

Re: Cocirculation of Influenza Viruses

yes, presumably they are cutting free access to flunet.
Who can register ? how ?


> If you are a registered user for a specific programme,
> simply click on the Registered User Login and type in
> your Login and Password to access the restricted user site.

WHO-secrecy...

now that Southern flu starts and we need to know
****** or H3N2

 

[gsgs]

Re: Cocirculation of Influenza Viruses

works again !

2010/07/15,15:00 GMT
(H1): 21 48 42 30 18 47 63 25 18 7 7 19 13 12 19 19 8 18 19 13 11 9 10 4 3 2 1 
(H3): 108 88 83 88 75 83 63 75 81 59 45 62 86 82 86 81 65 95 83 142 90 97 85 91 86 71 29 
(Mx): 5250 4006 3158 2201 1977 1667 1335 1412 1245 1159 936 809 731 607 524 432 261 361 305 221 198 167 187 157 128 119 106 
(A ): 5744 4552 3631 2602 2377 2056 1702 1749 1575 1428 1205 1042 1006 797 701 614 378 525 458 427 350 305 328 287 249 233 152 
(B ): 844 1214 1577 1548 1497 1282 804 1284 1331 1492 1686 1682 1714 1287 1097 1136 1012 775 601 483 387 314 287 168 209 140 85 
%Mx(A): 97.6 96.7 96.1 94.9 95.5 92.7 91.3 93.3 92.6 94.6 94.7 90.8 88 86.5 83.3 81.2 78.1 76.1 74.9 58.7 66.2 61.1 66.3 62.3 58.9 61.9 77.9 
%B: 12.8 21 30.2 37.3 38.6 38.4 32 42.3 45.8 51 58.3 61.7 63 61.7 61 64.9 72.8 59.6 56.7 53 52.5 50.7 46.6 36.9 45.6 37.5 35.8

weeks 24-27 : H3 - Mx
Australia : 6,5,2,1 - 4,7,16,12
Brazil : 0,0,0,? - 10,15,5,?
Cambodia: 0,1,1,0 - 2,1,10,13
Chile: 3,5,3,5 - 24,20,31,36
China:4,8,20,23 - 15,24,32,45
India:0,0,?,? - 17,3,?,?
Japan:0,0,0,0 - 8,4,5,0
Kenya:6,3,10,? - 0,1,0,?
Madagascar:6,5,?,? - 0,0,0,0
Mexico:0,0,0,? - 1,2,0,?
New Zealand:0,1,0,? - 1,2,2,?
Russia:0,1,0,0 - 2,0,0,0 - 0,0,0,0
Singapore:50,38,30,? - 31,20,21,?
South Africa:9,16,?,? - 0,1,?,?
USA:0,2,0,? - 0,2,0,?


2010/07/24,08:00

(H1): 21 48 42 30 18 47 63 25 18 7 7 19 13 12 21 19 8 18 20 13 11 10 12 4 3 2 1 0 0 
(H3): 108 88 83 94 75 83 63 76 81 59 45 64 87 82 89 78 68 99 87 143 92 98 89 83 89 73 69 61 13 
(Mx): 5240 4010 3163 2206 1978 1554 1321 1423 1270 1189 954 843 764 615 537 317 269 377 312 225 201 169 193 127 130 138 153 89 0 
(A ): 5746 4557 3659 2607 2379 1943 1689 1765 1603 1462 1227 1058 1015 817 719 498 396 551 476 436 362 318 348 263 277 259 242 170 13 
(B ): 844 1214 1578 1548 1497 1282 804 1291 1337 1497 1686 1684 1716 1291 1099 1139 1018 781 606 486 394 344 337 229 253 176 118 72 1 
%Mx(A): 97.5 96.7 96.1 94.6 95.5 92.2 91.2 93.3 92.7 94.7 94.8 91 88.4 86.7 82.9 76.5 77.9 76.3 74.4 59 66.1 61 65.6 59.3 58.5 64.7 68.6 59.3 0 
%B: 12.8 21 30.1 37.2 38.6 39.7 32.2 42.2 45.4 50.5 57.8 61.4 62.8 61.2 60.4 69.5 71.9 58.6 56 52.7 52.1 51.9 49.1 46.5 47.7 40.4 32.7 29.7 7.1

2010/09/15

(H1): 3 3 2 1 1 1 2 0 1 2 1 0 
(H3): 163 184 210 241 326 308 499 626 699 901 831 433 
(Mx): 220 277 345 460 490 543 702 810 702 713 572 69 
(A ): 443 516 606 908 893 949 1378 1603 1582 1853 1654 519 
(B ): 285 312 324 401 349 372 319 328 343 306 199 45 
%Mx(A): 56.9 59.6 61.9 65.5 59.9 63.7 58.3 56.4 50 44.1 40.7 13.7 
%B: 39.1 37.6 34.8 30.6 28 28.1 18.7 16.9 17.8 14.1 10.7 7.9

 

[gsgs]

Re: Cocirculation of Influenza Viruses

weeks 25-30

(H1):3,2,1,1,1,0
(H3):134,138,134,145,165,36
(Mx):149,178,177,236,193,102
(A):339,368,348,439,415,141
(B):269,218,187,242,183,31
%Mx(A):52,55.9,56.7,61.7,53.7,73.9
%B:44.2,37.2,34.9,35.5,30.6,18


countries with much H3:
--------------------------
China,H3: 8,20,44,84,133,29
China,Mx:24,32,55,66,77,34

Kenya,H3:4,10,6,8,13,0
Kenya,Mx:1,0,0,0,0,0

Panama,H3:43,53,32,6,3,0
Panama,Mx:2,0,0,0,0,0

Singapore,H3:38,30,32,26,0,0
Singapore,Mx:20,21,21,19

 

[gsgs]

Re: Cocirculation of Influenza Viruses

(H1): 3 3 1 2 1 1 2 0 0
(H3): 150 144 167 184 257 219 296 213 226
(Mx): 192 249 318 427 453 470 582 606 214
(A ): 398 448 535 689 781 778 1031 847 448
(B ): 278 255 272 357 302 232 155 86 54
%Mx(A): 55.6 62.8 65.4 69.6 63.7 68.1 66.1 73.9 48.6
%B: 41.1 36.2 33.7 34.1 27.8 22.9 13.0 09.2 10.7

weeks 29-33:
-------------
Australia,H1:0,0,0,0,0
Australia,H3:1,3,4,2,4
Australia,Mx:13,26,29,20,34
Australia,B :0,2,5,21,20

China,H1:1,1,1,0,0
China,H3:151,164,254,183,222
China,Mx:77,60,91,90,55
China, B:158,125,95,37,29

India,H1:0,0,0,0,0
India,H3:0,1,5,11,0
India,Mx:232,306,425,448,123
India, B:0,3,3,8,5

Japan,H1:0,0,0,0,0
Japan,H3:5,2,4,1,0
Japan,Mx:3,2,2,4,0
Japan, B:3,1,0,0,0

Kenya,H1:0,0,0,0,0
Kenya,H3:13,0,14,10,0
Kenya,Mx:0,0,0,0,0
Kenya, B:1,0,0,0,0

New Zealand,H1:0,0,0,0,0
New Zealand,H3:0,0,0,0,0
New Zealand,Mx:7,4,18,40,0
New Zealand, B:0,0,1,0,0

Panama,H1:0,0,0,0,0
Panama,H3:3,1,0,0,0
Panama,Mx:0,0,0,0,0
Panama, B:0,0,0,0,0

Singapore,H1:0,0,0,0,0
Singapore,H3:33,8,9,0,0
Singapore,Mx:8,14,6,0,0
Singapore, B:17,25,24,0,0

USA,H1:0,0,0,0,0
USA,H3:3,9,4,5,0
USA,Mx:2,2,1,4,0
USA, B:4,4,2,8,0

--------------------------------

quick update Sept.1:
Chile,Singapore,USA have both, H3 and Mx
El Salvador,Kenya,Mexico have H3
India,NZ,Thailand have Mx

China H1:1,1,0,1,0
China H3:164,293,446,394,317
China Mx:60,92,110,66,53
China B:125,110,105,74,27

Japan H3:2,14,1,3,0
Japan Mx:2,7,5,1,0

------------------------------------------

 

[gsgs]

Re: Cocirculation of Influenza Viruses

2010/09/15
(H1): 3 3 2 1 1 1 2 0 1 2 1 0
(H3): 163 184 210 241 326 308 499 626 699 901 831 433
(Mx): 220 277 345 460 490 543 702 810 702 713 572 69
(A ): 443 516 606 908 893 949 1378 1603 1582 1853 1654 519
(B ): 285 312 324 401 349 372 319 328 343 306 199 45
%Mx(A): 56.9 59.6 61.9 65.5 59.9 63.7 58.3 56.4 50 44.1 40.7 13.7
%B: 39.1 37.6 34.8 30.6 28 28.1 18.7 16.9 17.8 14.1 10.7 7.9

AUS H3:4,2,4,2,5,3
AUS Mx:29,20,36,49,41,45
Chile H3:30,65,78,110,15,0
Chile Mx:34,51,62,37,55,0
China H3:293,446,494,678,744,421
China Mx:92,110,69,72,55,24
India H3:5,13,21,25,19,0
India Mx:425,484,393,358,273,0
Japan H3:16,7,10,4,4,3
Japan Mx:8,11,2,3,2,0
Kenya H3:0,11,4,7,12,6
Kenya Mx:0,0,0,1,0,0
Mexico H3:55,36,27,15,0,0
Mexico Mx:0,1,0,0,0,0
South Africa H3:37,22,11,13,6,-
South Africa Mx:18,21,28,38,13,-
Thailand H3:5,6,3,9,10,-
Thailand Mx:28,27,43,65,79,-

 

[gsgs]

Re: Cocirculation of Influenza Viruses

http://gamapserver.who.int/GlobalAtlas/DataQuery/browse.asp?catID=120000000000&lev=2

2010/10/01
(H1): 4,2,2,1,1,1,2,0,1,2,1,0,3,0
(H3): 163,192,211,251,348,320,570,693,795,1088,1267,1329,1237,758
(Mx): 278,321,388,488,517,562,719,826,727,747,634,393,214,109
(A ): 527,578,673,968,965,980,1464,1667,1678,2069,2145,2171,1701,943
(B ): 299,323,330,411,368,396,336,350,396,371,302,239,124,89
%Mx(A): 62.4,62.3,64.5,65.9,59.6,63.6,55.6,54.3,47.7,40.6,33.3,22.8,14.7,12.5
%B: 36.1,35.8,32.9,29.8,27.6,28.7,18.6,17.3,19,15.2,12.3,9.9,6.7,8.6


H3N2 wins
---------------------------------------
2010/10/10
(H1): 4,2,2,1,1,1,2,0,1,2,1,0,3,2,0
(H3): 163,192,213,251,353,320,576,704,822,1116,1347,1430,1479,1222,801
(Mx): 278,321,391,489,548,596,747,849,751,770,648,470,290,201,150
(A ): 527,578,675,967,1015,1035,1523,1741,1764,2148,2263,2272,2061,1636,1040
(B ): 299,323,330,411,390,433,376,388,463,451,373,298,216,167,96
%Mx(A): 62.4,62.3,64.5,65.9,60.7,64.9,56.3,54.6,47.7,40.7,32.4,24.7,16.3,14.1,15.7
%B: 36.1,35.8,32.8,29.8,27.7,29.4,19.7,18.2,20.7,17.3,14.1,11.5,09.4,09.2,08.4
-----------------------------------------

 

[gsgs]

Re: Cocirculation of Influenza Viruses

update week 42:

http://magictour.free.fr/panflu/fng5.GIF

the last 1-2 weeks are usually being updated and not yet complete,
so the values are too small


China: weeks 35..40
H3:887,1081,1176,952,875,667
Mx:59,42,25,29,16,24
B:83,69,61,60,53,36

Australia:
H3:5,3,4,2,3,17
Mx:51,47,30,62,46,41
B:20,27,22,41,42,36

Chile:
H3:235,225,212,250,175,-
Mx:52,19,7,12,1,-
B:71,55,57,33,16

South Africa:
H3:10,13,12,4,2,0
Mx:21,30,8,8,17,3
B:43,35,29,8,3,4

Mexico:
H3:265,170,50,32,6,0
Mx:0,0,0,1,0,0
B:0,3,2,3,0,0

USA:
H3:8,6,14,16,10,5
Mx:5,5,4,0,2,4
B:4,4,11,18,15,14

Bangladesh:
H3:11,13,18,9,13,6
Mx:5,1,2,1,1,3
B:1,5,1,0,0,0

Japan:
H3:16,23,14,12,22,13
Mx:6,20,8,11,4,8
B:3,1,2,1,0,1

Singapore:
H3:5,2,4,12,5,2
Mx:13,3,7,7,9,11
B:31,26,22,24,20,8

 

[gsgs]

Re: Cocirculation of Influenza Viruses

weeks 39,..,43:
---------------
(H1): 1,1,4,1,0
(H3): 1002,746,514,211,4
(Mx): 71,57,106,73,0
(A ): 1181,897,690,319,6
(B ): 105,83,125,63,3
%Mx(A): 06.6,07.0,16.9,25.6,00.0
%B: 08.1,08.4,15.3,16.4,33.3

Australia,H1:0,0,0,0,0
Australia,H3:0,0,0,4,1
Australia,Mx:0,0,0,25,26
Australia,B:0,0,0,21,26

China,H1:1,1,4,1,0
China,H3:739,557,380,184,0
China,Mx:25,12,22,38,0
China,B:46,45,48,20,0

Thailand,H1:0,0,0,0,0
Thailand,H3:0,21,19,17,0
Thailand,Mx:0,18,19,24,0
Thailand,B:0,12,16,9,0

Japan,H1:0,0,0,0,0
Japan,H3:25,24,19,9,5
Japan,Mx:4,11,3,6,1
Japan,B:1,1,1,2,0

 

[mixin]

Re: Cocirculation of Influenza Viruses

Those few cases of seasonal H1N1 that China and Australia had.. would they be the same strain that had circulated in small amounts last flu season (before panflu became dominant?

 

[gsgs]

Re: Cocirculation of Influenza Viruses

...presumably...
but it's supposed to die

In Russia it may live some years longer, like H1N1 in 1957-1962

----------------------------
2010/11/09:
(H1): 0,1,1,4,1,0
(H3): 331,1002,747,504,217,58
(Mx): 58,73,62,118,92,7
(A ): 402,1184,906,693,349,77
(B ): 34,109,84,127,75,14
%Mx(A): 14.9,06.7,07.6,18.8,29.6,10.7
%B: 07.7,08.4,08.4,15.4,17.6,15.3


old:
China,H1:1,1,4,1,0
China,H3:739,557,380,184,0
China,Mx:25,12,22,38,0
China,B:46,45,48,20,0

new:
China,H1:-,1,1,4,1,0
China,H3:-,739,557,380,184,48
China,Mx:-,25,12,22,38,7
China,B:-,46,45,58,20,11

--------------------------------------------------

2010/11/22

(H1):     4,   2,   2,   1,   2,   1,   2,   0,   1,   2,   1,   0,   3,   2,   0,   1,   1,   4,   6,   1,   0
(H3):   165, 193, 215, 251, 354, 334, 593, 722, 855,1215,1565,1664,1745,1566,1401,1210, 965, 652, 542, 299, 176
(Mx):   281, 328, 390, 470, 549, 626, 769, 866, 800, 827, 667, 508, 405, 340, 277, 186, 148, 153, 162,  80,  70
(A ):   521, 588, 678, 945,1014,1073,1561,1777,1840,2330,2500,2505,2468,2131,1853,1580,1267, 966, 816, 486, 369
(B ):   307, 341, 341, 407, 400, 446, 384, 402, 480, 476, 398, 353, 323, 339, 205, 213, 176, 189, 164, 204, 207
%Mx(A):62.4,62.7,64.2,65.0,60.6,65.1,56.3,54.5,48.3,40.4,29.8,23.3,18.8,17.8,16.5,13.3,13.2,18.9,22.8,21.0,28.4
%B:    37.0,36.7,33.4,30.1,28.2,29.3,19.7,18.4,20.6,16.9,13.7,12.3,11.5,13.7,09.9,11.8,12.1,16.3,16.7,29.5,35.9

China,week 35-45
H1:0,0,3,2,0,1,1,4,6,1,0
H3:887,1081,1176,952,875,739,557,380,267,129,49
Mx:59,42,25,29,16,25,12,22,43,7,5
B:83,69,61,60,53,46,45,59,31,28,15

Japan,week 35-45
H1:0,0,0,0,0,0,0,0,0,0,0
H3:20,25,19,12,28,30,25,15,40,7,6
Mx:6,21,8,12,6,12,5,7,9,6,1
B:3,1,2,1,1,1,1,2,0,0,0