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H1n1 cdc 2008

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  • #1

    H1n1 cdc 2008

    LOCUS FJ532095 1698 bp cRNA linear VRL 14-DEC-2008
    DEFINITION Influenza A virus (A/Florida/17/2008(H1N1)) segment 4 hemagglutinin
    (HA) gene, complete cds.
    ACCESSION FJ532095
    VERSION FJ532095.1 GI:216960270
    KEYWORDS .
    SOURCE Influenza A virus (A/Florida/17/2008(H1N1))
    ORGANISM Influenza A virus (A/Florida/17/2008(H1N1))
    Viruses; ssRNA negative-strand viruses; Orthomyxoviridae;
    Influenzavirus A.
    REFERENCE 1 (bases 1 to 1698)
    AUTHORS Garten,R.
    TITLE Direct Submission
    JOURNAL Submitted (08-DEC-2008) NCIRD/Influenza Division/VSDB, Centers for
    Disease Control and Prevention, Atlanta, 1600 Clifton Road, N.E.,
    Atlanta, GA 30333, USA
    COMMENT 'Some of the information does not have GenBank feature identifiers
    and is being provided in the comment section.'.

    ##EpifluData-START##
    Isolate A/Florida/17/2008
    Subtype H1N1
    Segment_name HA
    Passage_history M1/C1
    Antigen_character A/BRISBANE/59/2007-LIKE (H1N1)
    Adamantane_resistance sensitive
    Zanamivir_resistance sensitive
    Oseltamivir_resistance sensitive
    Country USA
    State/Province Florida state
    Collection_day 27
    Collection_month 8
    Collection_year 2008
    EPI_accession EPI168239
    ##EpifluData-END##
    FEATURES Location/Qualifiers
    source 1..1698
    /organism="Influenza A virus (A/Florida/17/2008(H1N1))"
    /mol_type="viral cRNA"
    /strain="A/Florida/17/2008"
    /serotype="H1N1"
    /host="Homo sapiens"
    /db_xref="taxon:580299"
    /segment="4"
    /country="USA: Florida state"
    /collection_date="27-Aug-2008"
    gene 1..1698
    /gene="HA"
    CDS 1..1698
    /gene="HA"
    /codon_start=1
    /product="hemagglutinin"
    /protein_id="ACJ73777.1"
    /db_xref="GI:216960271"
    /translation="MKVKLLVLLCTFTATYADTICIGYHANNSTDTVDTVL EKNVTVT
    HSVNLLENSHNGKLCLLKGIAPLQLGNCSVAGWILGNPECELLISKESWS YIVEKPNP
    ENGTCYPGHFADYEELREQLSSVSSFERFEIFPKESSWPNHTVTGVSASC SHNGESSF
    YRNLIWLTGKNGLYPNLSKSYANNKEKEVLVLWGVHHPPNIGXQKALYHT ENAHVSVV
    SSHYSRKFTPEIAKRPKVRDQEGRINYYWTLLEPGDTIIFEANGNLIAPR YAFALSRG
    FGSGIINSNAPMDKCDAKCQTPQGAINSSLPFQNVHPVTIGECPKYVRSA KLRMVTGL
    RNIPSIQSRGLFGAIAGFIEGGWTGMVDGWYGYHHQNEQGSGYAADQKST QNAINGIT
    NKVNSVIEKMNTQFTAVGKEFNKLERRMENLNKKVDDGFIDIWTYNAELL VLLENERT
    LDFHDSNVKNLYEKVKSQLKNNAKEIGNGCFEFYHKCNDECMESVKNGTY DYPKYSEE
    SKLNREKIDGVKLESMGVYQILAIYSTVASSLVLLVSLGAISFWMCSNGS LQCRICI"
    ORIGIN
    1 atgaaagtaa aactactggt cctgttatgc acatttacag ctacatatgc agacacaata
    61 tgtataggct accatgctaa caactcgacc gacactgttg acacagtact tgaaaagaat
    121 gtgacagtga cacactctgt caacctgctt gagaacagtc acaatggaaa actatgtcta
    181 ttaaaaggaa tagccccact acaattgggt aactgcagcg ttgccgggtg gatcttagga
    241 aacccagaat gcgaattact gatttccaag gagtcatggt cctacattgt agaaaaacca
    301 aatcctgaga atggaacatg ttacccaggg catttcgctg actatgagga actgagggag
    361 caattgagtt cagtatcttc atttgagagg ttcgaaatat tccccaaaga aagctcatgg
    421 cccaaccaca ccgtaaccgg agtgtcagca tcatgctccc ataatgggga aagtagtttt
    481 tacagaaatt taatatggct gacggggaag aatggtttgt acccaaacct gagcaagtcc
    541 tatgcaaaca acaaagaaaa agaagtcctt gtactatggg gtgttcatca cccgccaaac
    601 ataggtrwcc aaaaggccct ctatcataca gaaaatgctc atgtttctgt agtgtcttca
    661 cattatagca gaaaattcac cccagaaata gccaaaagac ccaaagtaag agatcaagaa
    721 ggaagaatca actactactg gactctgctt gaacccgggg atacaataat atttgaggca
    781 aatggaaatc taatagcgcc aagatatgct ttcgcactga gtagaggctt tggatcagga
    841 atcatcaact caaatgcacc aatggataaa tgtgatgcga agtgccaaac acctcaggga
    901 gctataaaca gcagtcttcc tttccagaac gtacacccag tcacaatagg agagtgtcca
    961 aagtatgtca ggagtgcaaa attaaggatg gttacaggac taaggaacat cccatccatt
    1021 caatccagag gtttgtttgg agccattgcc ggtttcattg aaggggggtg gactggaatg
    1081 gtagatggtt ggtatggtta tcatcatcag aatgagcaag gatctggcta tgctgcagat
    1141 caaaaaagca cacaaaatgc cattaatggg attacaaaca aggtgaattc tgtaattgag
    1201 aaaatgaaca ctcaattcac agccgtgggc aaagaattca acaagttgga aagaaggatg
    1261 gaaaacttga ataaaaaagt tgatgatggg tttatagaca tctggacata caatgcagaa
    1321 ctgttggttc tactggaaaa tgaaaggact ttggatttcc atgactccaa tgtgaagaat
    1381 ctgtatgaga aagtaaaaag ccagttaaag aataatgcta aagaaatagg aaatgggtgt
    1441 tttgaattct atcacaagtg taacgatgaa tgcatggaga gtgtaaagaa tgggacttat
    1501 gactatccaa aatattccga agaatcaaag ttaaacaggg agaaaattga tggagtgaaa
    1561 ttggaatcaa tgggagtcta tcagattctg gcgatctact caacagtcgc cagttctctg
    1621 gttcttttgg tctccctggg ggcaatcagc ttctggatgt gttccaatgg gtctttgcag
    1681 tgtagaatat gcatctaa
    Tags: antiviral resistance, h1n1, sequences
  • #2
    Re: H1n1 cdc 2008

    August 21, 2008 is one of the last Tamiflu sensitive isolates in US

    Comment

    • #3
      Re: H1n1 cdc 2008

      LOCUS FJ532089 1698 bp cRNA linear VRL 14-DEC-2008
      DEFINITION Influenza A virus (A/Texas/11/2008(H1N1)) segment 4 hemagglutinin
      (HA) gene, complete cds.
      ACCESSION FJ532089
      VERSION FJ532089.1 GI:216960232
      KEYWORDS .
      SOURCE Influenza A virus (A/Texas/11/2008(H1N1))
      ORGANISM Influenza A virus (A/Texas/11/2008(H1N1))
      Viruses; ssRNA negative-strand viruses; Orthomyxoviridae;
      Influenzavirus A.
      REFERENCE 1 (bases 1 to 1698)
      AUTHORS Garten,R.
      TITLE Direct Submission
      JOURNAL Submitted (08-DEC-2008) NCIRD/Influenza Division/VSDB, Centers for
      Disease Control and Prevention, Atlanta, 1600 Clifton Road, N.E.,
      Atlanta, GA 30333, USA
      COMMENT 'Some of the information does not have GenBank feature identifiers
      and is being provided in the comment section.'.

      ##EpifluData-START##
      Isolate A/Texas/11/2008
      Subtype H1N1
      Segment_name HA
      Passage_history MX/C1
      Antigen_character A/BRISBANE/59/2007-LIKE (H1N1)
      Adamantane_resistance sensitive
      Zanamivir_resistance sensitive
      Oseltamivir_resistance sensitive
      Country USA
      State/Province Texas state
      Collection_day 20
      Collection_month 8
      Collection_year 2008
      EPI_accession EPI168248
      ##EpifluData-END##
      FEATURES Location/Qualifiers
      source 1..1698
      /organism="Influenza A virus (A/Texas/11/2008(H1N1))"
      /mol_type="viral cRNA"
      /strain="A/Texas/11/2008"
      /serotype="H1N1"
      /host="Homo sapiens"
      /db_xref="taxon:580309"
      /segment="4"
      /country="USA: Texas state"
      /collection_date="20-Aug-2008"
      gene 1..1698
      /gene="HA"
      CDS 1..1698
      /gene="HA"
      /codon_start=1
      /product="hemagglutinin"
      /protein_id="ACJ73771.1"
      /db_xref="GI:216960233"
      /translation="MKVKLLVLLCTFTATYADTICIGYHANNSTDTVDTVL EKNVTVT
      HSVNLLENSHNGKLCLLKGIAPLQLGNCSVAGWILGNPECELLISKESWS YIVEKPNP
      ENGTCYPGHFADYEELREQLSSVSSFERFEIFPKESSWPNHTVTGVXASC SHNGESSF
      YRNLLWLTGKNGLYPNLSKSYANNKEKEVLVLWGVHHPPNIGDQKALYHT ENAYVSVV
      SSHYSRKFTPEIAKRPKVRDQEGRINYYWTLLEPGETIIFEANGNLIAPR YAFALSRG
      FGSGIINSNAPMDKCDAKCQTPQGAINSSLPFQNVHPVTIGECPKYVRSA KLRMVTGL
      RNIPSIQPRGLFGAIAGFIEGGWTGMVDGWYGYHHQNEQGSGYAADQKST QNAINGIT
      NKVNSVIEKMNTQFTAVGKEFNKLERRMENLNKKVDDGFIDIWTYNAELL VLLENERT
      LDFHDSNVKNLYEKVKSQLKNNAKEIGNGCFEFYHKCNDECMESVKNGTY DYPKYSEE
      SKLNREKIDGVKLESMGVYQILAIYSTVASSLVLLVSLGAISFWMCSNGS LQCRICI"
      ORIGIN
      1 atgaaagtaa aactactggt cctgttatgc acatttacag ctacatatgc agacacaata
      61 tgtataggct accatgctaa caactcgacc gacactgttg acacagtact tgaaaagaat
      121 gtgacagtga cacactctgt caacctgctt gagaacagtc acaatggaaa actatgtcta
      181 ttaaaaggaa tagccccact acaattgggt aattgcagcg ttgccgggtg gatcttagga
      241 aacccagaat gcgaattact gatttccaag gagtcatggt cctacattgt agaaaaacca
      301 aatcctgaga atggaacatg ttacccaggg catttcgctg actatgagga actgagggag
      361 caattgagtt cagtatcttc gtttgagagg ttcgaaatat tccccaaaga aagctcatgg
      421 cccaaccaca ccgtaaccgg agtgwcagca tcatgctccc ataatgggga aagcagtttt
      481 tacagaaatt tgctatggct gacggggaag aatggtttgt acccaaacct gagcaagtcc
      541 tatgcaaaca acaaagaaaa agaagtcctt gtactatggg gtgttcatca cccgccaaac
      601 ataggtgacc aaaaggccct ctatcataca gaaaatgctt atgtctctgt agtgtcttca
      661 cattatagca gaaaattcac cccagaaata gccaagagac ccaaagtaag agatcaagaa
      721 ggaagaatca actactactg gactctgctt gaacccgggg agactataat atttgaggca
      781 aatggaaatc taatagcgcc aagatatgct ttcgcactga gtagaggctt tggatcagga
      841 atcatcaact caaatgctcc aatggataaa tgtgatgcga agtgccaaac acctcaggga
      901 gctataaaca gcagtcttcc tttccagaac gtacacccag tcacaatagg agagtgtcca
      961 aagtatgtca ggagtgcaaa attaaggatg gttacaggac taaggaacat cccatccatt
      1021 caacccagag gtttgtttgg agccattgcc ggtttcattg aaggggggtg gactggaatg
      1081 gtagatggtt ggtatggtta tcatcatcag aatgagcaag gatctggcta tgctgcagat
      1141 caaaaaagca cacaaaatgc cattaatggg attacaaaca aggtgaattc tgtaattgag
      1201 aaaatgaaca ctcaattcac agcagtgggc aaagaattca acaaattgga aagaaggatg
      1261 gaaaacttga ataaaaaagt tgatgatggg tttatagaca tttggacata taatgcagaa
      1321 ctgttggttc tactggaaaa tgaaaggact ttggatttcc atgactccaa tgtgaagaat
      1381 ctgtatgaga aagtaaaaag ccagttaaag aataatgcta aagaaatagg aaatgggtgt
      1441 tttgaattct atcacaagtg taacgatgaa tgcatggaga gtgtaaagaa tggaacttat
      1501 gactatccaa aatattccga agaatcaaag ttaaacaggg agaaaattga tggagtgaaa
      1561 ttggaatcaa tgggagtcta tcagattcta gcgatctact caacagtcgc cagttctctg
      1621 gttcttttgg tctccctggg ggcaatcagc ttctggatgt gttccaatgg gtctttgcag
      1681 tgtagaatat gcatctaa

      Comment

      • #4
        Re: H1n1 cdc 2008

        August 20, 2008 is another.

        Comment

        • #5
          Re: H1n1 cdc 2008

          LOCUS FJ532076 1698 bp cRNA linear VRL 14-DEC-2008
          DEFINITION Influenza A virus (A/California/07/2008(H1N1)) segment 4
          hemagglutinin (HA) gene, complete cds.
          ACCESSION FJ532076
          VERSION FJ532076.1 GI:216960145
          KEYWORDS .
          SOURCE Influenza A virus (A/California/07/2008(H1N1))
          ORGANISM Influenza A virus (A/California/07/2008(H1N1))
          Viruses; ssRNA negative-strand viruses; Orthomyxoviridae;
          Influenzavirus A.
          REFERENCE 1 (bases 1 to 1698)
          AUTHORS Garten,R.
          TITLE Direct Submission
          JOURNAL Submitted (08-DEC-2008) NCIRD/Influenza Division/VSDB, Centers for
          Disease Control and Prevention, Atlanta, 1600 Clifton Road, N.E.,
          Atlanta, GA 30333, USA
          COMMENT 'Some of the information does not have GenBank feature identifiers
          and is being provided in the comment section.'.

          ##EpifluData-START##
          Isolate A/California/07/2008
          Subtype H1N1
          Segment_name HA
          Passage_history C2/C1
          Antigen_character A/BRISBANE/59/2007-LIKE (H1N1) LOW
          Adamantane_resistance resistant
          Zanamivir_resistance sensitive
          Oseltamivir_resistance sensitive
          Country USA
          State/Province California state
          Collection_day 4
          Collection_month 9
          Collection_year 2008
          EPI_accession EPI168249
          ##EpifluData-END##
          FEATURES Location/Qualifiers
          source 1..1698
          /organism="Influenza A virus (A/California/07/2008(H1N1))"
          /mol_type="viral cRNA"
          /strain="A/California/07/2008"
          /serotype="H1N1"
          /host="Homo sapiens"
          /db_xref="taxon:580296"
          /segment="4"
          /country="USA: California state"
          /collection_date="04-Sep-2008"
          gene 1..1698
          /gene="HA"
          CDS 1..1698
          /gene="HA"
          /codon_start=1
          /product="hemagglutinin"
          /protein_id="ACJ73758.1"
          /db_xref="GI:216960146"
          /translation="MKVKLLVLLCTFTATYADTICIGYHANNSTDTVDTVL EKNVTVT
          HSVNLLEDNHNGKLCLLKGKAPLQLGNCSVAGWILGNPECGLLISKESWS YIVERPNP
          ENGTCYPGHFADYEELREQLSSVSSFERFEIFPKESSWPNHTVTGVSASC SHNGESSF
          YKNLLWLTGKNGLYPNLSKSYANNKEKEVLVLWGVHHPPNIGDQMTLYHK ENAYVSVV
          SSHYSRKFTPEIAKRPKVRDQEGRINYYWTLLEPGDTIIFEANGNLIAPR YAFALSRG
          FGSGIINSNAPMDECDAKCQTPQGAINSSLPFQNVHPVTIGECPKYVRSA KLRMVTGL
          RNIPSIQSRGLFGAIAGFIEGGWTGMVDGWYGYHHQNEQGSGYAADQKST QNAINGIT
          NKVNSVIEKMNTQFTAVGKEFNKLERRMENLNKKVDDGFIDVWTYNAELL VLLENERT
          LNFHDSNVKNLYEKVKNQLKNNAKEIGNGCFEFYHKCNDECMESVKNGTY DYPKYSEE
          SKLSREKIDGVKLESMGVYQILAIYSTVASSLVLLVSLGAISFWMCSNGS LQCRICI"
          ORIGIN
          1 atgaaagtaa aactactggt cctattatgc acatttacag ctacatatgc ggacacaata
          61 tgtatcggct accatgccaa caactcaacc gacactgttg acacagtact tgaaaagaat
          121 gtgacagtga cacactctgt caacctgctt gaggacaacc acaatggaaa actatgtcta
          181 ttaaaaggaa aagccccatt acaattgggt aactgcagcg ttgccgggtg gatcctagga
          241 aacccagaat gcggattact gatttccaag gagtcatggt cctacattgt agaaagacca
          301 aatcctgaga atggaacatg ttacccaggg catttcgccg actatgagga actgagggag
          361 caattgagtt cagtatcttc atttgagagg ttcgaaatat tccccaaaga aagctcatgg
          421 cccaaccaca ccgtaaccgg agtatcagca tcatgctccc ataacgggga aagcagcttt
          481 tacaaaaatt tgctatggct gacgggaaag aatggtttgt atccaaacct gagcaagtcc
          541 tatgcaaaca acaaagagaa agaagtcctc gtactatggg gtgttcatca cccgccaaac
          601 ataggtgacc aaatgaccct ctatcataaa gaaaatgctt atgtctctgt agtgtcttca
          661 cattatagca gaaaattcac cccagaaata gccaaaagac ccaaagtaag agatcaagaa
          721 ggaagaatca actactactg gactctgctt gaacccgggg atacaataat atttgaggca
          781 aatgggaatc taatagcgcc aagatatgct ttcgcactga gtagaggctt tggatcagga
          841 atcatcaact caaatgcacc aatggatgaa tgtgatgcga agtgccaaac acctcaggga
          901 gctataaaca gtagtcttcc tttccagaat gtacacccag tcacaatagg agaatgtcca
          961 aagtatgtca ggagtgcaaa attaaggatg gttacaggac taagaaacat cccatccatt
          1021 caatccagag gtttgtttgg agccattgcc ggtttcattg aaggggggtg gactggaatg
          1081 gtagatggtt ggtatggtta tcatcaccag aatgagcaag gatctggcta tgctgcagat
          1141 caaaaaagca cacaaaatgc cattaatggg attacaaaca aggtgaactc tgtaattgag
          1201 aagatgaaca ctcaattcac agctgtaggc aaagaattca acaaattgga aagaaggatg
          1261 gaaaacttaa ataaaaaagt tgatgacggg tttatagacg tttggacata taatgcagaa
          1321 ctgttggttc tactggaaaa tgaaaggact ttgaatttcc atgactccaa tgtgaagaat
          1381 ttgtatgaga aagtaaaaaa ccaattaaaa aataatgcca aagaaatagg aaatgggtgt
          1441 tttgaatttt atcacaagtg taacgatgaa tgcatggaga gtgtaaaaaa tggaacttat
          1501 gattatccaa aatactccga agaatcaaag ttaagcaggg agaaaattga tggagtgaaa
          1561 ttggaatcaa tgggagtcta tcagattctg gcgatctact caacagtcgc cagttctctg
          1621 gttcttttgg tctccctggg ggcaatcagc ttctggatgt gttccaatgg gtctttgcag
          1681 tgtagaatat gcatctaa

          Comment

          • #6
            Re: H1n1 cdc 2008

            The above is the only H1N1 oseltamivir sensitive isolate this season (post September), and as expected, is clade IIC (Hong Kong).

            Comment

            • #7
              Re: H1n1 cdc 2008

              can we say meanwhile whether the resisrance is likely
              caused by drug-use or not ?
              I'm interested in expert panflu damage estimates
              my current links: http://bit.ly/hFI7H ILI-charts: http://bit.ly/CcRgT

              Comment

              • #8
                Re: H1n1 cdc 2008

                Originally posted by gsgs View Post
                can we say meanwhile whether the resisrance is likely
                caused by drug-use or not ?
                No Tamiflu required.

                This season the only sensitive isolate is clade IIC (Hong Kong). All others are Brisbane (clade IIB) and 100% have H274Y (and have NOTHING to do with oseltamivir use).

                Comment

                • #9
                  Re: H1n1 cdc 2008

                  South Africa tied to Wshington State

                  gb|FJ532073.1| Influenza A virus (A/Washington/05/2008(H1N1))... 40.1 0.042
                  gb|EU914916.1| Influenza A virus (A/Johannesburg/46/2008(H1N1... 40.1 0.042
                  gb|EU914915.1| Influenza A virus (A/Johannesburg/35/2008(H1N1... 40.1 0.042
                  gb|EU914914.1| Influenza A virus (A/Johannesburg/34/2008(H1N1... 40.1 0.042
                  gb|EU914911.1| Influenza A virus (A/Johannesburg/25/2008(H1N1... 40.1 0.042
                  gb|EU914909.1| Influenza A virus (A/Johannesburg/10/2008(H1N1... 40.1 0.042

                  Comment

                  • #10
                    Re: H1n1 cdc 2008

                    LOCUS FJ532073 1698 bp cRNA linear VRL 14-DEC-2008
                    DEFINITION Influenza A virus (A/Washington/05/2008(H1N1)) segment 4
                    hemagglutinin (HA) gene, complete cds.
                    ACCESSION FJ532073
                    VERSION FJ532073.1 GI:216960125
                    KEYWORDS .
                    SOURCE Influenza A virus (A/Washington/05/2008(H1N1))
                    ORGANISM Influenza A virus (A/Washington/05/2008(H1N1))
                    Viruses; ssRNA negative-strand viruses; Orthomyxoviridae;
                    Influenzavirus A.
                    REFERENCE 1 (bases 1 to 1698)
                    AUTHORS Garten,R.
                    TITLE Direct Submission
                    JOURNAL Submitted (08-DEC-2008) NCIRD/Influenza Division/VSDB, Centers for
                    Disease Control and Prevention, Atlanta, 1600 Clifton Road, N.E.,
                    Atlanta, GA 30333, USA
                    COMMENT 'Some of the information does not have GenBank feature identifiers
                    and is being provided in the comment section.'.

                    ##EpifluData-START##
                    Isolate A/Washington/05/2008
                    Subtype H1N1
                    Segment_name HA
                    Passage_history M1/C1
                    Antigen_character A/BRISBANE/59/2007-LIKE (H1N1)
                    Adamantane_resistance sensitive
                    Zanamivir_resistance sensitive
                    Oseltamivir_resistance resistant
                    Country USA
                    State/Province Washington state
                    Collection_day 23
                    Collection_month 7
                    Collection_year 2008
                    EPI_accession EPI168237
                    ##EpifluData-END##
                    FEATURES Location/Qualifiers
                    source 1..1698
                    /organism="Influenza A virus (A/Washington/05/2008(H1N1))"
                    /mol_type="viral cRNA"
                    /strain="A/Washington/05/2008"
                    /serotype="H1N1"
                    /host="Homo sapiens"
                    /db_xref="taxon:580313"
                    /segment="4"
                    /country="USA: Washington state"
                    /collection_date="23-Jul-2008"
                    gene 1..1698
                    /gene="HA"
                    CDS 1..1698
                    /gene="HA"
                    /codon_start=1
                    /product="hemagglutinin"
                    /protein_id="ACJ73755.1"
                    /db_xref="GI:216960126"
                    /translation="MKVKLLVLLCTFTATYADTICIGYHANNSTDTVDTVL EKNVTVT
                    HSVNLLENSHNGKLCLLKGIAPLQLGNCSVAGWILGNPECELLISKESWS YIVEKPNP
                    ENGTCYPGHFADYEELREQLSSVSSFERFEIFPKESSWPXHTVTGVSASC SHNGESSF
                    YRNLLWLTGKNGLYPXLSKSYANNKEKEVLVLWGVHHPPSINBQKTLYHT ENAYVSVV
                    SSHYSRKFTPEIAKRPKVRDQEGRINYYWTLLEPGDTIIFEANGNLIAPR YAFALSRG
                    FGSGIINSNAPMDKCDAKCQTPQGAINSSLPFQNVHPVTIGECPKYVRSA KLRMVTGL
                    RNIPSIQSRGLFGAIAGFIEGGWTGMVDGWYGYHHQNEQGSGYAADQKST QNAINGIT
                    NKVNSVIEKMNTQFTAVGKEFNKLERRMENLNKKVDDGFIDIWTYNAELL VLLENERT
                    LDFHDSNVKNLYEKVKSQLKNNAKEIGNGCFEFYHKCNDECMESVKNGTY DYPKYSEE
                    SKLNREKIDGVKLESMGVYQILAIYSTVASSLVLLVSLGAISFWMCSNGS LQCRICI"
                    ORIGIN
                    1 atgaaagtaa aactactggt cctgttatgc acatttacag ctacatatgc agacacaata
                    61 tgtataggct accatgctaa caactcgacc gacactgttg acacagtact tgaaaagaat
                    121 gtgacagtga cacactctgt caacctgctt gagaacagtc acaatggaaa actatgtcta
                    181 ttaaaaggaa tagccccact acaattgggt aactgcagcg ttgccgggtg gatcttagga
                    241 aacccagaat gcgaattact gatttccaag gagtcatggt cctacattgt agaaaaacca
                    301 aatcctgaga atggaacatg ttacccaggg catttcgctg actatgagga actgagggag
                    361 caattgagtt cagtatcttc atttgagagg ttcgaaatat tccccaaaga aagctcatgg
                    421 cccmaccaca ccgtaaccgg agtgtcagca tcatgctccc ataatgggga aagcagtttt
                    481 tacagaaatt tgctatggct gacggggaag aatggtttgt acccaaamct gagcaagtcc
                    541 tatgcaaaca acaaagaaaa agaagtcctt gtactatggg gtgttcatca cccgccaagc
                    601 ataaatratc aaaagaccct ctatcataca gaaaatgctt atgtttctgt agtgtcttca
                    661 cattatagca gaaaattcac cccagaaata gccaaaagac ccaaagtaag agatcaagaa
                    721 ggaagaatca actactactg gactctgctt gaacccgggg atacaataat atttgaggca
                    781 aatggaaatc taatagcgcc aagatatgct ttcgcactga gtagaggctt tggatcagga
                    841 atcatcaact caaatgcacc aatggataaa tgtgatgcga agtgccaaac acctcaggga
                    901 gctataaaca gcagtcttcc tttccagaac gtacacccag tcacaatagg agagtgtcca
                    961 aagtatgtca ggagtgcaaa attaaggatg gttacaggac taaggaacat cccatccatt
                    1021 caatccagag gtttgtttgg agccattgcc ggtttcattg aaggggggtg gactggaatg
                    1081 gtagatggtt ggtatggtta tcatcatcag aatgagcaag gatctggcta tgctgcagat
                    1141 caaaaaagca cacaaaatgc cattaatggg attacaaaca aggtgaattc tgtaattgag
                    1201 aaaatgaaca ctcaattcac agcagtgggc aaagaattca acaaattgga aagaaggatg
                    1261 gaaaacttga ataaaaaagt tgatgatggg tttatagaca tttggacata taatgcagaa
                    1321 ctgttggttc tactggaaaa tgaaaggact ttggatttcc atgactccaa tgtgaagaat
                    1381 ctgtatgaga aagtaaaaag ccagttaaag aataatgcta aagaaatagg aaatgggtgt
                    1441 tttgaattct atcacaagtg taacgatgaa tgcatggaga gtgtaaagaa tggaacttat
                    1501 gactatccaa aatattccga agaatcaaag ttaaacaggg agaaaattga tggagtgaaa
                    1561 ttggaatcaa tgggagtcta tcagattctg gcgatctact caacagtcgc cagttctctg
                    1621 gttcttttgg tctccctggg ggcaatcagc ttctggatgt gttccaatgg gtctttgcag
                    1681 tgtagaatat gcatctaa

                    Comment

                    • #11
                      Re: H1N1 cdc 2008

                      Commentary

                      http://www.recombinomics.com/News/12170803/H274Y_Cluster_SA_US.html

                      Comment

                      • #12
                        Re: H1N1 cdc 2008

                        Originally posted by niman View Post
                        Commentary

                        http://www.recombinomics.com/News/12...ter_SA_US.html
                        Commentary

                        South African H1N1 Tamiflu Resistance in the United States
                        Recombinomics Commentary 14:39
                        December 17, 2008

                        The United States CDC has released HA H1N1 sequences from isolates collected over the summer and the beginning of this season. In week 43 the CDC characterized the first H1N1 isolate for antiviral resistance. It was oseltamivir sensitive but amantadine resistant, which was the pattern for all clade IIC (Hong Kong) isolates reported last season. That isolate appears to be A/California.07/2008, which matched the resistance pattern above and phylogenetic analysis clearly demonstrated it was clade IIC and closely related to clade IIC isolates collected in the US last season. The isolate was collected September 4, 2008.

                        All 44 H1N1 isolates tested after the IIC isolate above appear to be clade IIB (Brisbane) because all are oseltamivir resistant and amantadine sensitive. This high level of resistance was seen over the summer in South Africa, where reports on the first 225 H1N1 isolates tested were oseltamivir resistance.

                        Several months ago 8 HA sequences and 8 NA sequences from South Africa have also been released at Genbank. All sequences evolved from the IIB sub-clade that was dominant in several countries in Europe, including Norway, where H274Y frequencies exceeded 65%. This dominant sub-clade also had D354G, which had been present previously in clade IIA and IIC. The acquisition by IIB appeared to offer a selective advantage because all NA sequences in South Africa had this change.

                        In addition, the dominant HA sequence from South Africa had a cluster of changes near the receptor binding domain positive 190 (H3 numbering). These five changes were found in a variety of H1N1 isolates. Two were present in H1N1 isolates from Kenya, two were in H1N1 isolates from the 1940’s, and one was in clade IIC in Hong Kong, suggesting acquisitions linked to a series of recombination events.

                        This cluster of changes is present in the HA isolate collected over the summer in Washington, A/Washington/05/2008, demonstrating the movement of these changes from South Africa to the northern hemisphere and increasing the likelihood that this rapid evolution will be present in the H1N1 isolates in the United States this season, which has created a mismatch between antiviral recommendations and resistance in circulation in the United States this season..

                        Four of these five changes also produce 3 non-synonymous changes, which may decrease the effectiveness of the current H1N1 vaccine, which targets the Brisbane clade IIB target, but the isolate used did not have the recent changes.

                        Release of additional HA and NA sequences from this season would be useful. It is likely that the 100% levels of resistance in clade IIB in the United States will continue, and the level of the South Africa sub-clade would be of interest.


                        .
                        "The next major advancement in the health of American people will be determined by what the individual is willing to do for himself"-- John Knowles, Former President of the Rockefeller Foundation

                        Comment

                        • #13
                          Re: H1N1 cdc 2008

                          Front door:

                          <TABLE cellPadding=0 width="100%"><TBODY><TR><TD style="WHITE-SPACE: nowrap" vAlign=top width="20%"><INPUT id=UidCheckBox type=checkbox value=216960270 name=EntrezSystem2.PEntrez.Nuccore.Sequence_Result sPanel.Sequence_RVDocSum.uid sid="1">1: FJ532095</TD><TD vAlign=top align=left>
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                          <SCRIPT language=JavaScript1.2><!-- var Menu216960270 = [ ["UseLocalConfig", "jsmenu3Config", "", ""], ["Protein" , "window.top.location='/sites/entrez?Db=protein&DbFrom=nuccore&Cmd=Link&LinkName =nuccore_protein&LinkReadableName=Protein&IdsFromR esult=216960270&ordinalpos=1&itool=EntrezSystem2.P Entrez.Nuccore.Sequence_ResultsPanel.Sequence_RVDo cSum' ", "", ""], ["Taxonomy" , "window.top.location='/sites/entrez?Db=taxonomy&DbFrom=nuccore&Cmd=Link&LinkNam e=nuccore_taxonomy&LinkReadableName=Taxonomy&IdsFr omResult=216960270&ordinalpos=1&itool=EntrezSystem 2.PEntrez.Nuccore.Sequence_ResultsPanel.Sequence_R VDocSum' ", "", ""], ["Related Sequences" , "window.top.location='/sites/entrez?Db=nuccore&DbFrom=nuccore&Cmd=Link&LinkName =nuccore_nuccore&LinkReadableName=Related%20Sequen ces&IdsFromResult=216960270&ordinalpos=1&itool=Ent rezSystem2.PEntrez.Nuccore.Sequence_ResultsPanel.S equence_RVDocSum' ", "", ""] ] --></SCRIPT>Links</TD></TR><TR><TD style="PADDING-LEFT: 2.8em" vAlign=top align=left colSpan=3>Influenza A virus (A/Florida/17/2008(H1N1)) segment 4 hemagglutinin (HA) gene, complete cds
                          gi|216960270|gb|FJ532095.1|[216960270]
                          </TD></TR></TBODY></TABLE><!--docsumok 216960263 216960263 1 0 1698-->
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                          Reports<SCRIPT language=JavaScript1.2><!--var PopUpMenu2_LocalConfig_Reports216960263 = [ ["TitleText","Reports"]];var Reports216960263 = [ ["UseLocalConfig","Reports216960263","",""], ["ASN.1","window.top.location='/entrez/viewer.fcgi?list_uids=216960263&db=nuccore&dopt=as n'","",""], ["XML","window.top.location='/entrez/viewer.fcgi?list_uids=216960263&db=nuccore&dopt=xm l'","",""], ["Summary","window.top.location='/entrez/viewer.fcgi?list_uids=216960263&db=nuccore&dopt=do csum'","",""], ["Brief","window.top.location='/entrez/viewer.fcgi?list_uids=216960263&db=nuccore&dopt=br ief'","",""], ["FASTA","window.top.location='/entrez/viewer.fcgi?list_uids=216960263&db=nuccore&dopt=fa sta'","",""], ["TinySeq XML","window.top.location='/entrez/viewer.fcgi?list_uids=216960263&db=nuccore&dopt=fa sta_xml'","",""], ["GenBank","window.top.location='/entrez/viewer.fcgi?list_uids=216960263&db=nuccore&dopt=gb '","",""], ["INSDSeq XML","window.top.location='/entrez/viewer.fcgi?list_uids=216960263&db=nuccore&dopt=gb c_xml'","",""], ["GenBank(Full)","window.top.location='/entrez/viewer.fcgi?list_uids=216960263&db=nuccore&dopt=gb withparts'","",""], ["GI List","window.top.location='/entrez/viewer.fcgi?list_uids=216960263&db=nuccore&dopt=gi '","",""], ["Graphic","window.top.location='?cmd=Show&doptcmdl =graph&db=nuccore&term=FJ532094'","",""], ["Revision History","window.top.location='/entrez/sutils/girevhist.cgi?val=FJ532094'","",""]]--></SCRIPT> </TD><TD vAlign=top align=right>
                          <SCRIPT language=JavaScript1.2><!-- var Menu216960263 = [ ["UseLocalConfig", "jsmenu3Config", "", ""], ["Protein" , "window.top.location='/sites/entrez?Db=protein&DbFrom=nuccore&Cmd=Link&LinkName =nuccore_protein&LinkReadableName=Protein&IdsFromR esult=216960263&ordinalpos=2&itool=EntrezSystem2.P Entrez.Nuccore.Sequence_ResultsPanel.Sequence_RVDo cSum' ", "", ""], ["Taxonomy" , "window.top.location='/sites/entrez?Db=taxonomy&DbFrom=nuccore&Cmd=Link&LinkNam e=nuccore_taxonomy&LinkReadableName=Taxonomy&IdsFr omResult=216960263&ordinalpos=2&itool=EntrezSystem 2.PEntrez.Nuccore.Sequence_ResultsPanel.Sequence_R VDocSum' ", "", ""], ["Related Sequences" , "window.top.location='/sites/entrez?Db=nuccore&DbFrom=nuccore&Cmd=Link&LinkName =nuccore_nuccore&LinkReadableName=Related%20Sequen ces&IdsFromResult=216960263&ordinalpos=2&itool=Ent rezSystem2.PEntrez.Nuccore.Sequence_ResultsPanel.S equence_RVDocSum' ", "", ""] ] --></SCRIPT>Links</TD></TR><TR><TD style="PADDING-LEFT: 2.8em" vAlign=top align=left colSpan=3>Influenza A virus (A/North Carolina/06/2008(H1N1)) segment 4 hemagglutinin (HA) gene, complete cds
                          gi|216960263|gb|FJ532094.1|[216960263]
                          </TD></TR></TBODY></TABLE></DT></DL>
                          <!--docsumok 216960232 216960232 1 0 1698--><DL><DT><TABLE cellPadding=0 width="100%"><TBODY><TR><TD style="WHITE-SPACE: nowrap" vAlign=top width="20%"><INPUT id=UidCheckBox type=checkbox value=216960232 name=EntrezSystem2.PEntrez.Nuccore.Sequence_Result sPanel.Sequence_RVDocSum.uid sid="3">3: FJ532089</TD><TD vAlign=top align=left>
                          Reports<SCRIPT language=JavaScript1.2><!--var PopUpMenu2_LocalConfig_Reports216960232 = [ ["TitleText","Reports"]];var Reports216960232 = [ ["UseLocalConfig","Reports216960232","",""], ["ASN.1","window.top.location='/entrez/viewer.fcgi?list_uids=216960232&db=nuccore&dopt=as n'","",""], ["XML","window.top.location='/entrez/viewer.fcgi?list_uids=216960232&db=nuccore&dopt=xm l'","",""], ["Summary","window.top.location='/entrez/viewer.fcgi?list_uids=216960232&db=nuccore&dopt=do csum'","",""], ["Brief","window.top.location='/entrez/viewer.fcgi?list_uids=216960232&db=nuccore&dopt=br ief'","",""], ["FASTA","window.top.location='/entrez/viewer.fcgi?list_uids=216960232&db=nuccore&dopt=fa sta'","",""], ["TinySeq XML","window.top.location='/entrez/viewer.fcgi?list_uids=216960232&db=nuccore&dopt=fa sta_xml'","",""], ["GenBank","window.top.location='/entrez/viewer.fcgi?list_uids=216960232&db=nuccore&dopt=gb '","",""], ["INSDSeq XML","window.top.location='/entrez/viewer.fcgi?list_uids=216960232&db=nuccore&dopt=gb c_xml'","",""], ["GenBank(Full)","window.top.location='/entrez/viewer.fcgi?list_uids=216960232&db=nuccore&dopt=gb withparts'","",""], ["GI List","window.top.location='/entrez/viewer.fcgi?list_uids=216960232&db=nuccore&dopt=gi '","",""], ["Graphic","window.top.location='?cmd=Show&doptcmdl =graph&db=nuccore&term=FJ532089'","",""], ["Revision History","window.top.location='/entrez/sutils/girevhist.cgi?val=FJ532089'","",""]]--></SCRIPT> </TD><TD vAlign=top align=right>
                          <SCRIPT language=JavaScript1.2><!-- var Menu216960232 = [ ["UseLocalConfig", "jsmenu3Config", "", ""], ["Protein" , "window.top.location='/sites/entrez?Db=protein&DbFrom=nuccore&Cmd=Link&LinkName =nuccore_protein&LinkReadableName=Protein&IdsFromR esult=216960232&ordinalpos=3&itool=EntrezSystem2.P Entrez.Nuccore.Sequence_ResultsPanel.Sequence_RVDo cSum' ", "", ""], ["Taxonomy" , "window.top.location='/sites/entrez?Db=taxonomy&DbFrom=nuccore&Cmd=Link&LinkNam e=nuccore_taxonomy&LinkReadableName=Taxonomy&IdsFr omResult=216960232&ordinalpos=3&itool=EntrezSystem 2.PEntrez.Nuccore.Sequence_ResultsPanel.Sequence_R VDocSum' ", "", ""], ["Related Sequences" , "window.top.location='/sites/entrez?Db=nuccore&DbFrom=nuccore&Cmd=Link&LinkName =nuccore_nuccore&LinkReadableName=Related%20Sequen ces&IdsFromResult=216960232&ordinalpos=3&itool=Ent rezSystem2.PEntrez.Nuccore.Sequence_ResultsPanel.S equence_RVDocSum' ", "", ""] ] --></SCRIPT>Links</TD></TR><TR><TD style="PADDING-LEFT: 2.8em" vAlign=top align=left colSpan=3>Influenza A virus (A/Texas/11/2008(H1N1)) segment 4 hemagglutinin (HA) gene, complete cds
                          gi|216960232|gb|FJ532089.1|[216960232]
                          </TD></TR></TBODY></TABLE></DT></DL>
                          <!--docsumok 216960226 216960226 1 0 1698--><DL><DT><TABLE cellPadding=0 width="100%"><TBODY><TR><TD style="WHITE-SPACE: nowrap" vAlign=top width="20%"><INPUT id=UidCheckBox type=checkbox value=216960226 name=EntrezSystem2.PEntrez.Nuccore.Sequence_Result sPanel.Sequence_RVDocSum.uid sid="4">4: FJ532088</TD><TD vAlign=top align=left>
                          Reports<SCRIPT language=JavaScript1.2><!--var PopUpMenu2_LocalConfig_Reports216960226 = [ ["TitleText","Reports"]];var Reports216960226 = [ ["UseLocalConfig","Reports216960226","",""], ["ASN.1","window.top.location='/entrez/viewer.fcgi?list_uids=216960226&db=nuccore&dopt=as n'","",""], ["XML","window.top.location='/entrez/viewer.fcgi?list_uids=216960226&db=nuccore&dopt=xm l'","",""], ["Summary","window.top.location='/entrez/viewer.fcgi?list_uids=216960226&db=nuccore&dopt=do csum'","",""], ["Brief","window.top.location='/entrez/viewer.fcgi?list_uids=216960226&db=nuccore&dopt=br ief'","",""], ["FASTA","window.top.location='/entrez/viewer.fcgi?list_uids=216960226&db=nuccore&dopt=fa sta'","",""], ["TinySeq XML","window.top.location='/entrez/viewer.fcgi?list_uids=216960226&db=nuccore&dopt=fa sta_xml'","",""], ["GenBank","window.top.location='/entrez/viewer.fcgi?list_uids=216960226&db=nuccore&dopt=gb '","",""], ["INSDSeq XML","window.top.location='/entrez/viewer.fcgi?list_uids=216960226&db=nuccore&dopt=gb c_xml'","",""], ["GenBank(Full)","window.top.location='/entrez/viewer.fcgi?list_uids=216960226&db=nuccore&dopt=gb withparts'","",""], ["GI List","window.top.location='/entrez/viewer.fcgi?list_uids=216960226&db=nuccore&dopt=gi '","",""], ["Graphic","window.top.location='?cmd=Show&doptcmdl =graph&db=nuccore&term=FJ532088'","",""], ["Revision History","window.top.location='/entrez/sutils/girevhist.cgi?val=FJ532088'","",""]]--></SCRIPT> </TD><TD vAlign=top align=right>
                          <SCRIPT language=JavaScript1.2><!-- var Menu216960226 = [ ["UseLocalConfig", "jsmenu3Config", "", ""], ["Protein" , "window.top.location='/sites/entrez?Db=protein&DbFrom=nuccore&Cmd=Link&LinkName =nuccore_protein&LinkReadableName=Protein&IdsFromR esult=216960226&ordinalpos=4&itool=EntrezSystem2.P Entrez.Nuccore.Sequence_ResultsPanel.Sequence_RVDo cSum' ", "", ""], ["Taxonomy" , "window.top.location='/sites/entrez?Db=taxonomy&DbFrom=nuccore&Cmd=Link&LinkNam e=nuccore_taxonomy&LinkReadableName=Taxonomy&IdsFr omResult=216960226&ordinalpos=4&itool=EntrezSystem 2.PEntrez.Nuccore.Sequence_ResultsPanel.Sequence_R VDocSum' ", "", ""], ["Related Sequences" , "window.top.location='/sites/entrez?Db=nuccore&DbFrom=nuccore&Cmd=Link&LinkName =nuccore_nuccore&LinkReadableName=Related%20Sequen ces&IdsFromResult=216960226&ordinalpos=4&itool=Ent rezSystem2.PEntrez.Nuccore.Sequence_ResultsPanel.S equence_RVDocSum' ", "", ""] ] --></SCRIPT>Links</TD></TR><TR><TD style="PADDING-LEFT: 2.8em" vAlign=top align=left colSpan=3>Influenza A virus (A/Texas/09/2008(H1N1)) segment 4 hemagglutinin (HA) gene, complete cds
                          gi|216960226|gb|FJ532088.1|[216960226]
                          </TD></TR></TBODY></TABLE></DT></DL>
                          <!--docsumok 216960219 216960219 1 0 1698--><DL><DT><TABLE cellPadding=0 width="100%"><TBODY><TR><TD style="WHITE-SPACE: nowrap" vAlign=top width="20%"><INPUT id=UidCheckBox type=checkbox value=216960219 name=EntrezSystem2.PEntrez.Nuccore.Sequence_Result sPanel.Sequence_RVDocSum.uid sid="5">5: FJ532087</TD><TD vAlign=top align=left>
                          Reports<SCRIPT language=JavaScript1.2><!--var PopUpMenu2_LocalConfig_Reports216960219 = [ ["TitleText","Reports"]];var Reports216960219 = [ ["UseLocalConfig","Reports216960219","",""], ["ASN.1","window.top.location='/entrez/viewer.fcgi?list_uids=216960219&db=nuccore&dopt=as n'","",""], ["XML","window.top.location='/entrez/viewer.fcgi?list_uids=216960219&db=nuccore&dopt=xm l'","",""], ["Summary","window.top.location='/entrez/viewer.fcgi?list_uids=216960219&db=nuccore&dopt=do csum'","",""], ["Brief","window.top.location='/entrez/viewer.fcgi?list_uids=216960219&db=nuccore&dopt=br ief'","",""], ["FASTA","window.top.location='/entrez/viewer.fcgi?list_uids=216960219&db=nuccore&dopt=fa sta'","",""], ["TinySeq XML","window.top.location='/entrez/viewer.fcgi?list_uids=216960219&db=nuccore&dopt=fa sta_xml'","",""], ["GenBank","window.top.location='/entrez/viewer.fcgi?list_uids=216960219&db=nuccore&dopt=gb '","",""], ["INSDSeq XML","window.top.location='/entrez/viewer.fcgi?list_uids=216960219&db=nuccore&dopt=gb c_xml'","",""], ["GenBank(Full)","window.top.location='/entrez/viewer.fcgi?list_uids=216960219&db=nuccore&dopt=gb withparts'","",""], ["GI List","window.top.location='/entrez/viewer.fcgi?list_uids=216960219&db=nuccore&dopt=gi '","",""], ["Graphic","window.top.location='?cmd=Show&doptcmdl =graph&db=nuccore&term=FJ532087'","",""], ["Revision History","window.top.location='/entrez/sutils/girevhist.cgi?val=FJ532087'","",""]]--></SCRIPT> </TD><TD vAlign=top align=right>
                          <SCRIPT language=JavaScript1.2><!-- var Menu216960219 = [ ["UseLocalConfig", "jsmenu3Config", "", ""], ["Protein" , "window.top.location='/sites/entrez?Db=protein&DbFrom=nuccore&Cmd=Link&LinkName =nuccore_protein&LinkReadableName=Protein&IdsFromR esult=216960219&ordinalpos=5&itool=EntrezSystem2.P Entrez.Nuccore.Sequence_ResultsPanel.Sequence_RVDo cSum' ", "", ""], ["Taxonomy" , "window.top.location='/sites/entrez?Db=taxonomy&DbFrom=nuccore&Cmd=Link&LinkNam e=nuccore_taxonomy&LinkReadableName=Taxonomy&IdsFr omResult=216960219&ordinalpos=5&itool=EntrezSystem 2.PEntrez.Nuccore.Sequence_ResultsPanel.Sequence_R VDocSum' ", "", ""], ["Related Sequences" , "window.top.location='/sites/entrez?Db=nuccore&DbFrom=nuccore&Cmd=Link&LinkName =nuccore_nuccore&LinkReadableName=Related%20Sequen ces&IdsFromResult=216960219&ordinalpos=5&itool=Ent rezSystem2.PEntrez.Nuccore.Sequence_ResultsPanel.S equence_RVDocSum' ", "", ""] ] --></SCRIPT>Links</TD></TR><TR><TD style="PADDING-LEFT: 2.8em" vAlign=top align=left colSpan=3>Influenza A virus (A/North Carolina/06/2008(H1N1)) segment 4 hemagglutinin (HA) gene, complete cds
                          gi|216960219|gb|FJ532087.1|[216960219]
                          </TD></TR></TBODY></TABLE></DT></DL>
                          <!--docsumok 216960199 216960199 1 0 1698--><DL><DT><TABLE cellPadding=0 width="100%"><TBODY><TR><TD style="WHITE-SPACE: nowrap" vAlign=top width="20%"><INPUT id=UidCheckBox type=checkbox value=216960199 name=EntrezSystem2.PEntrez.Nuccore.Sequence_Result sPanel.Sequence_RVDocSum.uid sid="6">6: FJ532084</TD><TD vAlign=top align=left>
                          Reports<SCRIPT language=JavaScript1.2><!--var PopUpMenu2_LocalConfig_Reports216960199 = [ ["TitleText","Reports"]];var Reports216960199 = [ ["UseLocalConfig","Reports216960199","",""], ["ASN.1","window.top.location='/entrez/viewer.fcgi?list_uids=216960199&db=nuccore&dopt=as n'","",""], ["XML","window.top.location='/entrez/viewer.fcgi?list_uids=216960199&db=nuccore&dopt=xm l'","",""], ["Summary","window.top.location='/entrez/viewer.fcgi?list_uids=216960199&db=nuccore&dopt=do csum'","",""], ["Brief","window.top.location='/entrez/viewer.fcgi?list_uids=216960199&db=nuccore&dopt=br ief'","",""], ["FASTA","window.top.location='/entrez/viewer.fcgi?list_uids=216960199&db=nuccore&dopt=fa sta'","",""], ["TinySeq XML","window.top.location='/entrez/viewer.fcgi?list_uids=216960199&db=nuccore&dopt=fa sta_xml'","",""], ["GenBank","window.top.location='/entrez/viewer.fcgi?list_uids=216960199&db=nuccore&dopt=gb '","",""], ["INSDSeq XML","window.top.location='/entrez/viewer.fcgi?list_uids=216960199&db=nuccore&dopt=gb c_xml'","",""], ["GenBank(Full)","window.top.location='/entrez/viewer.fcgi?list_uids=216960199&db=nuccore&dopt=gb withparts'","",""], ["GI List","window.top.location='/entrez/viewer.fcgi?list_uids=216960199&db=nuccore&dopt=gi '","",""], ["Graphic","window.top.location='?cmd=Show&doptcmdl =graph&db=nuccore&term=FJ532084'","",""], ["Revision History","window.top.location='/entrez/sutils/girevhist.cgi?val=FJ532084'","",""]]--></SCRIPT> </TD><TD vAlign=top align=right>
                          <SCRIPT language=JavaScript1.2><!-- var Menu216960199 = [ ["UseLocalConfig", "jsmenu3Config", "", ""], ["Protein" , "window.top.location='/sites/entrez?Db=protein&DbFrom=nuccore&Cmd=Link&LinkName =nuccore_protein&LinkReadableName=Protein&IdsFromR esult=216960199&ordinalpos=6&itool=EntrezSystem2.P Entrez.Nuccore.Sequence_ResultsPanel.Sequence_RVDo cSum' ", "", ""], ["Taxonomy" , "window.top.location='/sites/entrez?Db=taxonomy&DbFrom=nuccore&Cmd=Link&LinkNam e=nuccore_taxonomy&LinkReadableName=Taxonomy&IdsFr omResult=216960199&ordinalpos=6&itool=EntrezSystem 2.PEntrez.Nuccore.Sequence_ResultsPanel.Sequence_R VDocSum' ", "", ""], ["Related Sequences" , "window.top.location='/sites/entrez?Db=nuccore&DbFrom=nuccore&Cmd=Link&LinkName =nuccore_nuccore&LinkReadableName=Related%20Sequen ces&IdsFromResult=216960199&ordinalpos=6&itool=Ent rezSystem2.PEntrez.Nuccore.Sequence_ResultsPanel.S equence_RVDocSum' ", "", ""] ] --></SCRIPT>Links</TD></TR><TR><TD style="PADDING-LEFT: 2.8em" vAlign=top align=left colSpan=3>Influenza A virus (A/Texas/10/2008(H1N1)) segment 4 hemagglutinin (HA) gene, complete cds
                          gi|216960199|gb|FJ532084.1|[216960199]
                          </TD></TR></TBODY></TABLE></DT></DL>
                          <!--docsumok 216960192 216960192 1 0 1698--><DL><DT><TABLE cellPadding=0 width="100%"><TBODY><TR><TD style="WHITE-SPACE: nowrap" vAlign=top width="20%"><INPUT id=UidCheckBox type=checkbox value=216960192 name=EntrezSystem2.PEntrez.Nuccore.Sequence_Result sPanel.Sequence_RVDocSum.uid sid="7">7: FJ532083</TD><TD vAlign=top align=left>
                          Reports<SCRIPT language=JavaScript1.2><!--var PopUpMenu2_LocalConfig_Reports216960192 = [ ["TitleText","Reports"]];var Reports216960192 = [ ["UseLocalConfig","Reports216960192","",""], ["ASN.1","window.top.location='/entrez/viewer.fcgi?list_uids=216960192&db=nuccore&dopt=as n'","",""], ["XML","window.top.location='/entrez/viewer.fcgi?list_uids=216960192&db=nuccore&dopt=xm l'","",""], ["Summary","window.top.location='/entrez/viewer.fcgi?list_uids=216960192&db=nuccore&dopt=do csum'","",""], ["Brief","window.top.location='/entrez/viewer.fcgi?list_uids=216960192&db=nuccore&dopt=br ief'","",""], ["FASTA","window.top.location='/entrez/viewer.fcgi?list_uids=216960192&db=nuccore&dopt=fa sta'","",""], ["TinySeq XML","window.top.location='/entrez/viewer.fcgi?list_uids=216960192&db=nuccore&dopt=fa sta_xml'","",""], ["GenBank","window.top.location='/entrez/viewer.fcgi?list_uids=216960192&db=nuccore&dopt=gb '","",""], ["INSDSeq XML","window.top.location='/entrez/viewer.fcgi?list_uids=216960192&db=nuccore&dopt=gb c_xml'","",""], ["GenBank(Full)","window.top.location='/entrez/viewer.fcgi?list_uids=216960192&db=nuccore&dopt=gb withparts'","",""], ["GI List","window.top.location='/entrez/viewer.fcgi?list_uids=216960192&db=nuccore&dopt=gi '","",""], ["Graphic","window.top.location='?cmd=Show&doptcmdl =graph&db=nuccore&term=FJ532083'","",""], ["Revision History","window.top.location='/entrez/sutils/girevhist.cgi?val=FJ532083'","",""]]--></SCRIPT> </TD><TD vAlign=top align=right>
                          <SCRIPT language=JavaScript1.2><!-- var Menu216960192 = [ ["UseLocalConfig", "jsmenu3Config", "", ""], ["Protein" , "window.top.location='/sites/entrez?Db=protein&DbFrom=nuccore&Cmd=Link&LinkName =nuccore_protein&LinkReadableName=Protein&IdsFromR esult=216960192&ordinalpos=7&itool=EntrezSystem2.P Entrez.Nuccore.Sequence_ResultsPanel.Sequence_RVDo cSum' ", "", ""], ["Taxonomy" , "window.top.location='/sites/entrez?Db=taxonomy&DbFrom=nuccore&Cmd=Link&LinkNam e=nuccore_taxonomy&LinkReadableName=Taxonomy&IdsFr omResult=216960192&ordinalpos=7&itool=EntrezSystem 2.PEntrez.Nuccore.Sequence_ResultsPanel.Sequence_R VDocSum' ", "", ""], ["Related Sequences" , "window.top.location='/sites/entrez?Db=nuccore&DbFrom=nuccore&Cmd=Link&LinkName =nuccore_nuccore&LinkReadableName=Related%20Sequen ces&IdsFromResult=216960192&ordinalpos=7&itool=Ent rezSystem2.PEntrez.Nuccore.Sequence_ResultsPanel.S equence_RVDocSum' ", "", ""] ] --></SCRIPT>Links</TD></TR><TR><TD style="PADDING-LEFT: 2.8em" vAlign=top align=left colSpan=3>Influenza A virus (A/Washington/06/2008(H1N1)) segment 4 hemagglutinin (HA) gene, complete cds
                          gi|216960192|gb|FJ532083.1|[216960192]
                          </TD></TR></TBODY></TABLE></DT></DL>
                          <!--docsumok 216960145 216960145 1 0 1698--><DL><DT><TABLE cellPadding=0 width="100%"><TBODY><TR><TD style="WHITE-SPACE: nowrap" vAlign=top width="20%"><INPUT id=UidCheckBox type=checkbox value=216960145 name=EntrezSystem2.PEntrez.Nuccore.Sequence_Result sPanel.Sequence_RVDocSum.uid sid="8">8: FJ532076</TD><TD vAlign=top align=left>
                          Reports<SCRIPT language=JavaScript1.2><!--var PopUpMenu2_LocalConfig_Reports216960145 = [ ["TitleText","Reports"]];var Reports216960145 = [ ["UseLocalConfig","Reports216960145","",""], ["ASN.1","window.top.location='/entrez/viewer.fcgi?list_uids=216960145&db=nuccore&dopt=as n'","",""], ["XML","window.top.location='/entrez/viewer.fcgi?list_uids=216960145&db=nuccore&dopt=xm l'","",""], ["Summary","window.top.location='/entrez/viewer.fcgi?list_uids=216960145&db=nuccore&dopt=do csum'","",""], ["Brief","window.top.location='/entrez/viewer.fcgi?list_uids=216960145&db=nuccore&dopt=br ief'","",""], ["FASTA","window.top.location='/entrez/viewer.fcgi?list_uids=216960145&db=nuccore&dopt=fa sta'","",""], ["TinySeq XML","window.top.location='/entrez/viewer.fcgi?list_uids=216960145&db=nuccore&dopt=fa sta_xml'","",""], ["GenBank","window.top.location='/entrez/viewer.fcgi?list_uids=216960145&db=nuccore&dopt=gb '","",""], ["INSDSeq XML","window.top.location='/entrez/viewer.fcgi?list_uids=216960145&db=nuccore&dopt=gb c_xml'","",""], ["GenBank(Full)","window.top.location='/entrez/viewer.fcgi?list_uids=216960145&db=nuccore&dopt=gb withparts'","",""], ["GI List","window.top.location='/entrez/viewer.fcgi?list_uids=216960145&db=nuccore&dopt=gi '","",""], ["Graphic","window.top.location='?cmd=Show&doptcmdl =graph&db=nuccore&term=FJ532076'","",""], ["Revision History","window.top.location='/entrez/sutils/girevhist.cgi?val=FJ532076'","",""]]--></SCRIPT> </TD><TD vAlign=top align=right>
                          <SCRIPT language=JavaScript1.2><!-- var Menu216960145 = [ ["UseLocalConfig", "jsmenu3Config", "", ""], ["Protein" , "window.top.location='/sites/entrez?Db=protein&DbFrom=nuccore&Cmd=Link&LinkName =nuccore_protein&LinkReadableName=Protein&IdsFromR esult=216960145&ordinalpos=8&itool=EntrezSystem2.P Entrez.Nuccore.Sequence_ResultsPanel.Sequence_RVDo cSum' ", "", ""], ["Taxonomy" , "window.top.location='/sites/entrez?Db=taxonomy&DbFrom=nuccore&Cmd=Link&LinkNam e=nuccore_taxonomy&LinkReadableName=Taxonomy&IdsFr omResult=216960145&ordinalpos=8&itool=EntrezSystem 2.PEntrez.Nuccore.Sequence_ResultsPanel.Sequence_R VDocSum' ", "", ""], ["Related Sequences" , "window.top.location='/sites/entrez?Db=nuccore&DbFrom=nuccore&Cmd=Link&LinkName =nuccore_nuccore&LinkReadableName=Related%20Sequen ces&IdsFromResult=216960145&ordinalpos=8&itool=Ent rezSystem2.PEntrez.Nuccore.Sequence_ResultsPanel.S equence_RVDocSum' ", "", ""] ] --></SCRIPT>Links</TD></TR><TR><TD style="PADDING-LEFT: 2.8em" vAlign=top align=left colSpan=3>Influenza A virus (A/California/07/2008(H1N1)) segment 4 hemagglutinin (HA) gene, complete cds
                          gi|216960145|gb|FJ532076.1|[216960145]
                          </TD></TR></TBODY></TABLE></DT></DL>
                          <!--docsumok 216960125 216960125 1 0 1698--><DL><DT><TABLE cellPadding=0 width="100%"><TBODY><TR><TD style="WHITE-SPACE: nowrap" vAlign=top width="20%"><INPUT id=UidCheckBox type=checkbox value=216960125 name=EntrezSystem2.PEntrez.Nuccore.Sequence_Result sPanel.Sequence_RVDocSum.uid sid="9">9: FJ532073</TD><TD vAlign=top align=left>
                          Reports<SCRIPT language=JavaScript1.2><!--var PopUpMenu2_LocalConfig_Reports216960125 = [ ["TitleText","Reports"]];var Reports216960125 = [ ["UseLocalConfig","Reports216960125","",""], ["ASN.1","window.top.location='/entrez/viewer.fcgi?list_uids=216960125&db=nuccore&dopt=as n'","",""], ["XML","window.top.location='/entrez/viewer.fcgi?list_uids=216960125&db=nuccore&dopt=xm l'","",""], ["Summary","window.top.location='/entrez/viewer.fcgi?list_uids=216960125&db=nuccore&dopt=do csum'","",""], ["Brief","window.top.location='/entrez/viewer.fcgi?list_uids=216960125&db=nuccore&dopt=br ief'","",""], ["FASTA","window.top.location='/entrez/viewer.fcgi?list_uids=216960125&db=nuccore&dopt=fa sta'","",""], ["TinySeq XML","window.top.location='/entrez/viewer.fcgi?list_uids=216960125&db=nuccore&dopt=fa sta_xml'","",""], ["GenBank","window.top.location='/entrez/viewer.fcgi?list_uids=216960125&db=nuccore&dopt=gb '","",""], ["INSDSeq XML","window.top.location='/entrez/viewer.fcgi?list_uids=216960125&db=nuccore&dopt=gb c_xml'","",""], ["GenBank(Full)","window.top.location='/entrez/viewer.fcgi?list_uids=216960125&db=nuccore&dopt=gb withparts'","",""], ["GI List","window.top.location='/entrez/viewer.fcgi?list_uids=216960125&db=nuccore&dopt=gi '","",""], ["Graphic","window.top.location='?cmd=Show&doptcmdl =graph&db=nuccore&term=FJ532073'","",""], ["Revision History","window.top.location='/entrez/sutils/girevhist.cgi?val=FJ532073'","",""]]--></SCRIPT> </TD><TD vAlign=top align=right>
                          <SCRIPT language=JavaScript1.2><!-- var Menu216960125 = [ ["UseLocalConfig", "jsmenu3Config", "", ""], ["Protein" , "window.top.location='/sites/entrez?Db=protein&DbFrom=nuccore&Cmd=Link&LinkName =nuccore_protein&LinkReadableName=Protein&IdsFromR esult=216960125&ordinalpos=9&itool=EntrezSystem2.P Entrez.Nuccore.Sequence_ResultsPanel.Sequence_RVDo cSum' ", "", ""], ["Taxonomy" , "window.top.location='/sites/entrez?Db=taxonomy&DbFrom=nuccore&Cmd=Link&LinkNam e=nuccore_taxonomy&LinkReadableName=Taxonomy&IdsFr omResult=216960125&ordinalpos=9&itool=EntrezSystem 2.PEntrez.Nuccore.Sequence_ResultsPanel.Sequence_R VDocSum' ", "", ""], ["Related Sequences" , "window.top.location='/sites/entrez?Db=nuccore&DbFrom=nuccore&Cmd=Link&LinkName =nuccore_nuccore&LinkReadableName=Related%20Sequen ces&IdsFromResult=216960125&ordinalpos=9&itool=Ent rezSystem2.PEntrez.Nuccore.Sequence_ResultsPanel.S equence_RVDocSum' ", "", ""] ] --></SCRIPT>Links</TD></TR><TR><TD style="PADDING-LEFT: 2.8em" vAlign=top align=left colSpan=3>Influenza A virus (A/Washington/05/2008(H1N1)) segment 4 hemagglutinin (HA) gene, complete cds
                          gi|216960125|gb|FJ532073.1|[216960125]
                          </TD></TR></TBODY></TABLE></DT></DL>
                          <!--docsumok 216960118 216960118 1 0 1698--><DL><DT><TABLE cellPadding=0 width="100%"><TBODY><TR><TD style="WHITE-SPACE: nowrap" vAlign=top width="20%"><INPUT id=UidCheckBox type=checkbox value=216960118 name=EntrezSystem2.PEntrez.Nuccore.Sequence_Result sPanel.Sequence_RVDocSum.uid sid="10">10: FJ532072</TD><TD vAlign=top align=left>
                          Reports<SCRIPT language=JavaScript1.2><!--var PopUpMenu2_LocalConfig_Reports216960118 = [ ["TitleText","Reports"]];var Reports216960118 = [ ["UseLocalConfig","Reports216960118","",""], ["ASN.1","window.top.location='/entrez/viewer.fcgi?list_uids=216960118&db=nuccore&dopt=as n'","",""], ["XML","window.top.location='/entrez/viewer.fcgi?list_uids=216960118&db=nuccore&dopt=xm l'","",""], ["Summary","window.top.location='/entrez/viewer.fcgi?list_uids=216960118&db=nuccore&dopt=do csum'","",""], ["Brief","window.top.location='/entrez/viewer.fcgi?list_uids=216960118&db=nuccore&dopt=br ief'","",""], ["FASTA","window.top.location='/entrez/viewer.fcgi?list_uids=216960118&db=nuccore&dopt=fa sta'","",""], ["TinySeq XML","window.top.location='/entrez/viewer.fcgi?list_uids=216960118&db=nuccore&dopt=fa sta_xml'","",""], ["GenBank","window.top.location='/entrez/viewer.fcgi?list_uids=216960118&db=nuccore&dopt=gb '","",""], ["INSDSeq XML","window.top.location='/entrez/viewer.fcgi?list_uids=216960118&db=nuccore&dopt=gb c_xml'","",""], ["GenBank(Full)","window.top.location='/entrez/viewer.fcgi?list_uids=216960118&db=nuccore&dopt=gb withparts'","",""], ["GI List","window.top.location='/entrez/viewer.fcgi?list_uids=216960118&db=nuccore&dopt=gi '","",""], ["Graphic","window.top.location='?cmd=Show&doptcmdl =graph&db=nuccore&term=FJ532072'","",""], ["Revision History","window.top.location='/entrez/sutils/girevhist.cgi?val=FJ532072'","",""]]--></SCRIPT> </TD><TD vAlign=top align=right>
                          <SCRIPT language=JavaScript1.2><!-- var Menu216960118 = [ ["UseLocalConfig", "jsmenu3Config", "", ""], ["Protein" , "window.top.location='/sites/entrez?Db=protein&DbFrom=nuccore&Cmd=Link&LinkName =nuccore_protein&LinkReadableName=Protein&IdsFromR esult=216960118&ordinalpos=10&itool=EntrezSystem2. PEntrez.Nuccore.Sequence_ResultsPanel.Sequence_RVD ocSum' ", "", ""], ["Taxonomy" , "window.top.location='/sites/entrez?Db=taxonomy&DbFrom=nuccore&Cmd=Link&LinkNam e=nuccore_taxonomy&LinkReadableName=Taxonomy&IdsFr omResult=216960118&ordinalpos=10&itool=EntrezSyste m2.PEntrez.Nuccore.Sequence_ResultsPanel.Sequence_ RVDocSum' ", "", ""], ["Related Sequences" , "window.top.location='/sites/entrez?Db=nuccore&DbFrom=nuccore&Cmd=Link&LinkName =nuccore_nuccore&LinkReadableName=Related%20Sequen ces&IdsFromResult=216960118&ordinalpos=10&itool=En trezSystem2.PEntrez.Nuccore.Sequence_ResultsPanel. Sequence_RVDocSum' ", "", ""] ] --></SCRIPT>Links</TD></TR><TR><TD style="PADDING-LEFT: 2.8em" vAlign=top align=left colSpan=3>Influenza A virus (A/Idaho/09/2008(H1N1)) segment 4 hemagglutinin (HA) gene, complete cds
                          gi|216960118|gb|FJ532072.1|[216960118]
                          </TD></TR></TBODY></TABLE></DT></DL>
                          <!--docsumok 216960111 216960111 1 0 1698--><DL><DT><TABLE cellPadding=0 width="100%"><TBODY><TR><TD style="WHITE-SPACE: nowrap" vAlign=top width="20%"><INPUT id=UidCheckBox type=checkbox value=216960111 name=EntrezSystem2.PEntrez.Nuccore.Sequence_Result sPanel.Sequence_RVDocSum.uid sid="11">11: FJ532071</TD><TD vAlign=top align=left>
                          Reports<SCRIPT language=JavaScript1.2><!--var PopUpMenu2_LocalConfig_Reports216960111 = [ ["TitleText","Reports"]];var Reports216960111 = [ ["UseLocalConfig","Reports216960111","",""], ["ASN.1","window.top.location='/entrez/viewer.fcgi?list_uids=216960111&db=nuccore&dopt=as n'","",""], ["XML","window.top.location='/entrez/viewer.fcgi?list_uids=216960111&db=nuccore&dopt=xm l'","",""], ["Summary","window.top.location='/entrez/viewer.fcgi?list_uids=216960111&db=nuccore&dopt=do csum'","",""], ["Brief","window.top.location='/entrez/viewer.fcgi?list_uids=216960111&db=nuccore&dopt=br ief'","",""], ["FASTA","window.top.location='/entrez/viewer.fcgi?list_uids=216960111&db=nuccore&dopt=fa sta'","",""], ["TinySeq XML","window.top.location='/entrez/viewer.fcgi?list_uids=216960111&db=nuccore&dopt=fa sta_xml'","",""], ["GenBank","window.top.location='/entrez/viewer.fcgi?list_uids=216960111&db=nuccore&dopt=gb '","",""], ["INSDSeq XML","window.top.location='/entrez/viewer.fcgi?list_uids=216960111&db=nuccore&dopt=gb c_xml'","",""], ["GenBank(Full)","window.top.location='/entrez/viewer.fcgi?list_uids=216960111&db=nuccore&dopt=gb withparts'","",""], ["GI List","window.top.location='/entrez/viewer.fcgi?list_uids=216960111&db=nuccore&dopt=gi '","",""], ["Graphic","window.top.location='?cmd=Show&doptcmdl =graph&db=nuccore&term=FJ532071'","",""], ["Revision History","window.top.location='/entrez/sutils/girevhist.cgi?val=FJ532071'","",""]]--></SCRIPT> </TD><TD vAlign=top align=right>
                          <SCRIPT language=JavaScript1.2><!-- var Menu216960111 = [ ["UseLocalConfig", "jsmenu3Config", "", ""], ["Protein" , "window.top.location='/sites/entrez?Db=protein&DbFrom=nuccore&Cmd=Link&LinkName =nuccore_protein&LinkReadableName=Protein&IdsFromR esult=216960111&ordinalpos=11&itool=EntrezSystem2. PEntrez.Nuccore.Sequence_ResultsPanel.Sequence_RVD ocSum' ", "", ""], ["Taxonomy" , "window.top.location='/sites/entrez?Db=taxonomy&DbFrom=nuccore&Cmd=Link&LinkNam e=nuccore_taxonomy&LinkReadableName=Taxonomy&IdsFr omResult=216960111&ordinalpos=11&itool=EntrezSyste m2.PEntrez.Nuccore.Sequence_ResultsPanel.Sequence_ RVDocSum' ", "", ""], ["Related Sequences" , "window.top.location='/sites/entrez?Db=nuccore&DbFrom=nuccore&Cmd=Link&LinkName =nuccore_nuccore&LinkReadableName=Related%20Sequen ces&IdsFromResult=216960111&ordinalpos=11&itool=En trezSystem2.PEntrez.Nuccore.Sequence_ResultsPanel. Sequence_RVDocSum' ", "", ""] ] --></SCRIPT>Links</TD></TR><TR><TD style="PADDING-LEFT: 2.8em" vAlign=top align=left colSpan=3>Influenza A virus (A/Texas/08/2008(H1N1)) segment 4 hemagglutinin (HA) gene, complete cds
                          gi|216960111|gb|FJ532071.1|[216960111] </TD></TR></TBODY></TABLE></DT></DL>

                          Comment

                          • #14
                            Re: H1N1 cdc 2008

                            HA sequences below are from this season

                            <DL><DT><TABLE cellPadding=0 width="100%"><TBODY><TR><TD style="WHITE-SPACE: nowrap" vAlign=top width="20%"><INPUT id=UidCheckBox type=checkbox value=218218012 name=EntrezSystem2.PEntrez.Nuccore.Sequence_Result sPanel.Sequence_RVDocSum.uid sid="128">128: FJ549062</TD><TD vAlign=top align=left>
                            Reports<SCRIPT language=JavaScript1.2><!--var PopUpMenu2_LocalConfig_Reports218218012 = [ ["TitleText","Reports"]];var Reports218218012 = [ ["UseLocalConfig","Reports218218012","",""], ["ASN.1","window.top.location='/entrez/viewer.fcgi?list_uids=218218012&db=nuccore&dopt=as n'","",""], ["XML","window.top.location='/entrez/viewer.fcgi?list_uids=218218012&db=nuccore&dopt=xm l'","",""], ["Summary","window.top.location='/entrez/viewer.fcgi?list_uids=218218012&db=nuccore&dopt=do csum'","",""], ["Brief","window.top.location='/entrez/viewer.fcgi?list_uids=218218012&db=nuccore&dopt=br ief'","",""], ["FASTA","window.top.location='/entrez/viewer.fcgi?list_uids=218218012&db=nuccore&dopt=fa sta'","",""], ["TinySeq XML","window.top.location='/entrez/viewer.fcgi?list_uids=218218012&db=nuccore&dopt=fa sta_xml'","",""], ["GenBank","window.top.location='/entrez/viewer.fcgi?list_uids=218218012&db=nuccore&dopt=gb '","",""], ["INSDSeq XML","window.top.location='/entrez/viewer.fcgi?list_uids=218218012&db=nuccore&dopt=gb c_xml'","",""], ["GenBank(Full)","window.top.location='/entrez/viewer.fcgi?list_uids=218218012&db=nuccore&dopt=gb withparts'","",""], ["GI List","window.top.location='/entrez/viewer.fcgi?list_uids=218218012&db=nuccore&dopt=gi '","",""], ["Graphic","window.top.location='?cmd=Show&doptcmdl =graph&db=nuccore&term=FJ549062'","",""], ["Revision History","window.top.location='/entrez/sutils/girevhist.cgi?val=FJ549062'","",""]]--></SCRIPT> </TD><TD vAlign=top align=right>
                            </TD></TR><TR><TD style="PADDING-LEFT: 2.8em" vAlign=top align=left colSpan=3>
                            gi|218218012|gb|FJ549062.1|[218218012]
                            </TD></TR></TBODY></TABLE></DT></DL>
                            <!--docsumok 218217990 218217990 1 1698--><DL><DT><TABLE cellPadding=0 width="100%"><TBODY><TR><TD style="WHITE-SPACE: nowrap" vAlign=top width="20%"><INPUT id=UidCheckBox type=checkbox value=218217990 name=EntrezSystem2.PEntrez.Nuccore.Sequence_Result sPanel.Sequence_RVDocSum.uid sid="129">129: FJ549051</TD><TD vAlign=top align=left>
                            Reports<SCRIPT language=JavaScript1.2><!--var PopUpMenu2_LocalConfig_Reports218217990 = [ ["TitleText","Reports"]];var Reports218217990 = [ ["UseLocalConfig","Reports218217990","",""], ["ASN.1","window.top.location='/entrez/viewer.fcgi?list_uids=218217990&db=nuccore&dopt=as n'","",""], ["XML","window.top.location='/entrez/viewer.fcgi?list_uids=218217990&db=nuccore&dopt=xm l'","",""], ["Summary","window.top.location='/entrez/viewer.fcgi?list_uids=218217990&db=nuccore&dopt=do csum'","",""], ["Brief","window.top.location='/entrez/viewer.fcgi?list_uids=218217990&db=nuccore&dopt=br ief'","",""], ["FASTA","window.top.location='/entrez/viewer.fcgi?list_uids=218217990&db=nuccore&dopt=fa sta'","",""], ["TinySeq XML","window.top.location='/entrez/viewer.fcgi?list_uids=218217990&db=nuccore&dopt=fa sta_xml'","",""], ["GenBank","window.top.location='/entrez/viewer.fcgi?list_uids=218217990&db=nuccore&dopt=gb '","",""], ["INSDSeq XML","window.top.location='/entrez/viewer.fcgi?list_uids=218217990&db=nuccore&dopt=gb c_xml'","",""], ["GenBank(Full)","window.top.location='/entrez/viewer.fcgi?list_uids=218217990&db=nuccore&dopt=gb withparts'","",""], ["GI List","window.top.location='/entrez/viewer.fcgi?list_uids=218217990&db=nuccore&dopt=gi '","",""], ["Graphic","window.top.location='?cmd=Show&doptcmdl =graph&db=nuccore&term=FJ549051'","",""], ["Revision History","window.top.location='/entrez/sutils/girevhist.cgi?val=FJ549051'","",""]]--></SCRIPT> </TD><TD vAlign=top align=right>
                            </TD></TR><TR><TD style="PADDING-LEFT: 2.8em" vAlign=top align=left colSpan=3>
                            gi|218217990|gb|FJ549051.1|[218217990]
                            </TD></TR></TBODY></TABLE></DT></DL>
                            <!--docsumok 218217978 218217978 1 1698--><DL><DT><TABLE cellPadding=0 width="100%"><TBODY><TR><TD style="WHITE-SPACE: nowrap" vAlign=top width="20%"><INPUT id=UidCheckBox type=checkbox value=218217978 name=EntrezSystem2.PEntrez.Nuccore.Sequence_Result sPanel.Sequence_RVDocSum.uid sid="130">130: FJ549045</TD><TD vAlign=top align=left>
                            Reports<SCRIPT language=JavaScript1.2><!--var PopUpMenu2_LocalConfig_Reports218217978 = [ ["TitleText","Reports"]];var Reports218217978 = [ ["UseLocalConfig","Reports218217978","",""], ["ASN.1","window.top.location='/entrez/viewer.fcgi?list_uids=218217978&db=nuccore&dopt=as n'","",""], ["XML","window.top.location='/entrez/viewer.fcgi?list_uids=218217978&db=nuccore&dopt=xm l'","",""], ["Summary","window.top.location='/entrez/viewer.fcgi?list_uids=218217978&db=nuccore&dopt=do csum'","",""], ["Brief","window.top.location='/entrez/viewer.fcgi?list_uids=218217978&db=nuccore&dopt=br ief'","",""], ["FASTA","window.top.location='/entrez/viewer.fcgi?list_uids=218217978&db=nuccore&dopt=fa sta'","",""], ["TinySeq XML","window.top.location='/entrez/viewer.fcgi?list_uids=218217978&db=nuccore&dopt=fa sta_xml'","",""], ["GenBank","window.top.location='/entrez/viewer.fcgi?list_uids=218217978&db=nuccore&dopt=gb '","",""], ["INSDSeq XML","window.top.location='/entrez/viewer.fcgi?list_uids=218217978&db=nuccore&dopt=gb c_xml'","",""], ["GenBank(Full)","window.top.location='/entrez/viewer.fcgi?list_uids=218217978&db=nuccore&dopt=gb withparts'","",""], ["GI List","window.top.location='/entrez/viewer.fcgi?list_uids=218217978&db=nuccore&dopt=gi '","",""], ["Graphic","window.top.location='?cmd=Show&doptcmdl =graph&db=nuccore&term=FJ549045'","",""], ["Revision History","window.top.location='/entrez/sutils/girevhist.cgi?val=FJ549045'","",""]]--></SCRIPT> </TD><TD vAlign=top align=right>
                            </TD></TR><TR><TD style="PADDING-LEFT: 2.8em" vAlign=top align=left colSpan=3>
                            gi|218217978|gb|FJ549045.1|[218217978]
                            </TD></TR></TBODY></TABLE></DT></DL>
                            <!--docsumok 218217970 218217970 1 1698--><DL><DT><TABLE cellPadding=0 width="100%"><TBODY><TR><TD style="WHITE-SPACE: nowrap" vAlign=top width="20%"><INPUT id=UidCheckBox type=checkbox value=218217970 name=EntrezSystem2.PEntrez.Nuccore.Sequence_Result sPanel.Sequence_RVDocSum.uid sid="131">131: FJ549041</TD><TD vAlign=top align=left>
                            Reports<SCRIPT language=JavaScript1.2><!--var PopUpMenu2_LocalConfig_Reports218217970 = [ ["TitleText","Reports"]];var Reports218217970 = [ ["UseLocalConfig","Reports218217970","",""], ["ASN.1","window.top.location='/entrez/viewer.fcgi?list_uids=218217970&db=nuccore&dopt=as n'","",""], ["XML","window.top.location='/entrez/viewer.fcgi?list_uids=218217970&db=nuccore&dopt=xm l'","",""], ["Summary","window.top.location='/entrez/viewer.fcgi?list_uids=218217970&db=nuccore&dopt=do csum'","",""], ["Brief","window.top.location='/entrez/viewer.fcgi?list_uids=218217970&db=nuccore&dopt=br ief'","",""], ["FASTA","window.top.location='/entrez/viewer.fcgi?list_uids=218217970&db=nuccore&dopt=fa sta'","",""], ["TinySeq XML","window.top.location='/entrez/viewer.fcgi?list_uids=218217970&db=nuccore&dopt=fa sta_xml'","",""], ["GenBank","window.top.location='/entrez/viewer.fcgi?list_uids=218217970&db=nuccore&dopt=gb '","",""], ["INSDSeq XML","window.top.location='/entrez/viewer.fcgi?list_uids=218217970&db=nuccore&dopt=gb c_xml'","",""], ["GenBank(Full)","window.top.location='/entrez/viewer.fcgi?list_uids=218217970&db=nuccore&dopt=gb withparts'","",""], ["GI List","window.top.location='/entrez/viewer.fcgi?list_uids=218217970&db=nuccore&dopt=gi '","",""], ["Graphic","window.top.location='?cmd=Show&doptcmdl =graph&db=nuccore&term=FJ549041'","",""], ["Revision History","window.top.location='/entrez/sutils/girevhist.cgi?val=FJ549041'","",""]]--></SCRIPT> </TD><TD vAlign=top align=right>
                            </TD></TR><TR><TD style="PADDING-LEFT: 2.8em" vAlign=top align=left colSpan=3>
                            gi|218217970|gb|FJ549041.1|[218217970]
                            </TD></TR></TBODY></TABLE></DT></DL>
                            <!--docsumok 218217968 218217968 1 1698--><DL><DT><TABLE cellPadding=0 width="100%"><TBODY><TR><TD style="WHITE-SPACE: nowrap" vAlign=top width="20%"><INPUT id=UidCheckBox type=checkbox value=218217968 name=EntrezSystem2.PEntrez.Nuccore.Sequence_Result sPanel.Sequence_RVDocSum.uid sid="132">132: FJ549040</TD><TD vAlign=top align=left>
                            Reports<SCRIPT language=JavaScript1.2><!--var PopUpMenu2_LocalConfig_Reports218217968 = [ ["TitleText","Reports"]];var Reports218217968 = [ ["UseLocalConfig","Reports218217968","",""], ["ASN.1","window.top.location='/entrez/viewer.fcgi?list_uids=218217968&db=nuccore&dopt=as n'","",""], ["XML","window.top.location='/entrez/viewer.fcgi?list_uids=218217968&db=nuccore&dopt=xm l'","",""], ["Summary","window.top.location='/entrez/viewer.fcgi?list_uids=218217968&db=nuccore&dopt=do csum'","",""], ["Brief","window.top.location='/entrez/viewer.fcgi?list_uids=218217968&db=nuccore&dopt=br ief'","",""], ["FASTA","window.top.location='/entrez/viewer.fcgi?list_uids=218217968&db=nuccore&dopt=fa sta'","",""], ["TinySeq XML","window.top.location='/entrez/viewer.fcgi?list_uids=218217968&db=nuccore&dopt=fa sta_xml'","",""], ["GenBank","window.top.location='/entrez/viewer.fcgi?list_uids=218217968&db=nuccore&dopt=gb '","",""], ["INSDSeq XML","window.top.location='/entrez/viewer.fcgi?list_uids=218217968&db=nuccore&dopt=gb c_xml'","",""], ["GenBank(Full)","window.top.location='/entrez/viewer.fcgi?list_uids=218217968&db=nuccore&dopt=gb withparts'","",""], ["GI List","window.top.location='/entrez/viewer.fcgi?list_uids=218217968&db=nuccore&dopt=gi '","",""], ["Graphic","window.top.location='?cmd=Show&doptcmdl =graph&db=nuccore&term=FJ549040'","",""], ["Revision History","window.top.location='/entrez/sutils/girevhist.cgi?val=FJ549040'","",""]]--></SCRIPT> </TD><TD vAlign=top align=right>
                            </TD></TR><TR><TD style="PADDING-LEFT: 2.8em" vAlign=top align=left colSpan=3>
                            gi|218217968|gb|FJ549040.1|[218217968]
                            </TD></TR></TBODY></TABLE></DT></DL>

                            Comment

                            • #15
                              Re: H1n1 cdc 2008

                              NA sequences also released

                              <TABLE cellPadding=0 width="100%"><TBODY><TR><TD style="WHITE-SPACE: nowrap" vAlign=top width="20%"><INPUT id=UidCheckBox type=checkbox value=218218023 name=EntrezSystem2.PEntrez.Nuccore.Sequence_Result sPanel.Sequence_RVDocSum.uid sid="32">232: FJ549067</TD><TD vAlign=top align=left>
                              Reports<SCRIPT language=JavaScript1.2><!--var PopUpMenu2_LocalConfig_Reports218218023 = [ ["TitleText","Reports"]];var Reports218218023 = [ ["UseLocalConfig","Reports218218023","",""], ["ASN.1","window.top.location='/entrez/viewer.fcgi?list_uids=218218023&db=nuccore&dopt=as n'","",""], ["XML","window.top.location='/entrez/viewer.fcgi?list_uids=218218023&db=nuccore&dopt=xm l'","",""], ["Summary","window.top.location='/entrez/viewer.fcgi?list_uids=218218023&db=nuccore&dopt=do csum'","",""], ["Brief","window.top.location='/entrez/viewer.fcgi?list_uids=218218023&db=nuccore&dopt=br ief'","",""], ["FASTA","window.top.location='/entrez/viewer.fcgi?list_uids=218218023&db=nuccore&dopt=fa sta'","",""], ["TinySeq XML","window.top.location='/entrez/viewer.fcgi?list_uids=218218023&db=nuccore&dopt=fa sta_xml'","",""], ["GenBank","window.top.location='/entrez/viewer.fcgi?list_uids=218218023&db=nuccore&dopt=gb '","",""], ["INSDSeq XML","window.top.location='/entrez/viewer.fcgi?list_uids=218218023&db=nuccore&dopt=gb c_xml'","",""], ["GenBank(Full)","window.top.location='/entrez/viewer.fcgi?list_uids=218218023&db=nuccore&dopt=gb withparts'","",""], ["GI List","window.top.location='/entrez/viewer.fcgi?list_uids=218218023&db=nuccore&dopt=gi '","",""], ["Graphic","window.top.location='?cmd=Show&doptcmdl =graph&db=nuccore&term=FJ549067'","",""], ["Revision History","window.top.location='/entrez/sutils/girevhist.cgi?val=FJ549067'","",""]]--></SCRIPT> </TD><TD vAlign=top align=right>
                              </TD></TR><TR><TD style="PADDING-LEFT: 2.8em" vAlign=top align=left colSpan=3>
                              gi|218218023|gb|FJ549067.1|[218218023]
                              </TD></TR></TBODY></TABLE><!--docsumok 218217988 218217988 1 1413-->
                              <DL><DT><TABLE cellPadding=0 width="100%"><TBODY><TR><TD style="WHITE-SPACE: nowrap" vAlign=top width="20%"><INPUT id=UidCheckBox type=checkbox value=218217988 name=EntrezSystem2.PEntrez.Nuccore.Sequence_Result sPanel.Sequence_RVDocSum.uid sid="33">233: FJ549050</TD><TD vAlign=top align=left>
                              Reports<SCRIPT language=JavaScript1.2><!--var PopUpMenu2_LocalConfig_Reports218217988 = [ ["TitleText","Reports"]];var Reports218217988 = [ ["UseLocalConfig","Reports218217988","",""], ["ASN.1","window.top.location='/entrez/viewer.fcgi?list_uids=218217988&db=nuccore&dopt=as n'","",""], ["XML","window.top.location='/entrez/viewer.fcgi?list_uids=218217988&db=nuccore&dopt=xm l'","",""], ["Summary","window.top.location='/entrez/viewer.fcgi?list_uids=218217988&db=nuccore&dopt=do csum'","",""], ["Brief","window.top.location='/entrez/viewer.fcgi?list_uids=218217988&db=nuccore&dopt=br ief'","",""], ["FASTA","window.top.location='/entrez/viewer.fcgi?list_uids=218217988&db=nuccore&dopt=fa sta'","",""], ["TinySeq XML","window.top.location='/entrez/viewer.fcgi?list_uids=218217988&db=nuccore&dopt=fa sta_xml'","",""], ["GenBank","window.top.location='/entrez/viewer.fcgi?list_uids=218217988&db=nuccore&dopt=gb '","",""], ["INSDSeq XML","window.top.location='/entrez/viewer.fcgi?list_uids=218217988&db=nuccore&dopt=gb c_xml'","",""], ["GenBank(Full)","window.top.location='/entrez/viewer.fcgi?list_uids=218217988&db=nuccore&dopt=gb withparts'","",""], ["GI List","window.top.location='/entrez/viewer.fcgi?list_uids=218217988&db=nuccore&dopt=gi '","",""], ["Graphic","window.top.location='?cmd=Show&doptcmdl =graph&db=nuccore&term=FJ549050'","",""], ["Revision History","window.top.location='/entrez/sutils/girevhist.cgi?val=FJ549050'","",""]]--></SCRIPT> </TD><TD vAlign=top align=right>
                              </TD></TR><TR><TD style="PADDING-LEFT: 2.8em" vAlign=top align=left colSpan=3>
                              gi|218217988|gb|FJ549050.1|[218217988]
                              </TD></TR></TBODY></TABLE></DT></DL>
                              <!--docsumok 218217984 218217984 1 1413--><DL><DT><TABLE cellPadding=0 width="100%"><TBODY><TR><TD style="WHITE-SPACE: nowrap" vAlign=top width="20%"><INPUT id=UidCheckBox type=checkbox value=218217984 name=EntrezSystem2.PEntrez.Nuccore.Sequence_Result sPanel.Sequence_RVDocSum.uid sid="34">234: FJ549048</TD><TD vAlign=top align=left>
                              Reports<SCRIPT language=JavaScript1.2><!--var PopUpMenu2_LocalConfig_Reports218217984 = [ ["TitleText","Reports"]];var Reports218217984 = [ ["UseLocalConfig","Reports218217984","",""], ["ASN.1","window.top.location='/entrez/viewer.fcgi?list_uids=218217984&db=nuccore&dopt=as n'","",""], ["XML","window.top.location='/entrez/viewer.fcgi?list_uids=218217984&db=nuccore&dopt=xm l'","",""], ["Summary","window.top.location='/entrez/viewer.fcgi?list_uids=218217984&db=nuccore&dopt=do csum'","",""], ["Brief","window.top.location='/entrez/viewer.fcgi?list_uids=218217984&db=nuccore&dopt=br ief'","",""], ["FASTA","window.top.location='/entrez/viewer.fcgi?list_uids=218217984&db=nuccore&dopt=fa sta'","",""], ["TinySeq XML","window.top.location='/entrez/viewer.fcgi?list_uids=218217984&db=nuccore&dopt=fa sta_xml'","",""], ["GenBank","window.top.location='/entrez/viewer.fcgi?list_uids=218217984&db=nuccore&dopt=gb '","",""], ["INSDSeq XML","window.top.location='/entrez/viewer.fcgi?list_uids=218217984&db=nuccore&dopt=gb c_xml'","",""], ["GenBank(Full)","window.top.location='/entrez/viewer.fcgi?list_uids=218217984&db=nuccore&dopt=gb withparts'","",""], ["GI List","window.top.location='/entrez/viewer.fcgi?list_uids=218217984&db=nuccore&dopt=gi '","",""], ["Graphic","window.top.location='?cmd=Show&doptcmdl =graph&db=nuccore&term=FJ549048'","",""], ["Revision History","window.top.location='/entrez/sutils/girevhist.cgi?val=FJ549048'","",""]]--></SCRIPT> </TD><TD vAlign=top align=right>
                              </TD></TR><TR><TD style="PADDING-LEFT: 2.8em" vAlign=top align=left colSpan=3>
                              gi|218217984|gb|FJ549048.1|[218217984]
                              </TD></TR></TBODY></TABLE></DT></DL>
                              <!--docsumok 218217958 218217958 1 1413--><DL><DT><TABLE cellPadding=0 width="100%"><TBODY><TR><TD style="WHITE-SPACE: nowrap" vAlign=top width="20%"><INPUT id=UidCheckBox type=checkbox value=218217958 name=EntrezSystem2.PEntrez.Nuccore.Sequence_Result sPanel.Sequence_RVDocSum.uid sid="35">235: FJ549035</TD><TD vAlign=top align=left>
                              Reports<SCRIPT language=JavaScript1.2><!--var PopUpMenu2_LocalConfig_Reports218217958 = [ ["TitleText","Reports"]];var Reports218217958 = [ ["UseLocalConfig","Reports218217958","",""], ["ASN.1","window.top.location='/entrez/viewer.fcgi?list_uids=218217958&db=nuccore&dopt=as n'","",""], ["XML","window.top.location='/entrez/viewer.fcgi?list_uids=218217958&db=nuccore&dopt=xm l'","",""], ["Summary","window.top.location='/entrez/viewer.fcgi?list_uids=218217958&db=nuccore&dopt=do csum'","",""], ["Brief","window.top.location='/entrez/viewer.fcgi?list_uids=218217958&db=nuccore&dopt=br ief'","",""], ["FASTA","window.top.location='/entrez/viewer.fcgi?list_uids=218217958&db=nuccore&dopt=fa sta'","",""], ["TinySeq XML","window.top.location='/entrez/viewer.fcgi?list_uids=218217958&db=nuccore&dopt=fa sta_xml'","",""], ["GenBank","window.top.location='/entrez/viewer.fcgi?list_uids=218217958&db=nuccore&dopt=gb '","",""], ["INSDSeq XML","window.top.location='/entrez/viewer.fcgi?list_uids=218217958&db=nuccore&dopt=gb c_xml'","",""], ["GenBank(Full)","window.top.location='/entrez/viewer.fcgi?list_uids=218217958&db=nuccore&dopt=gb withparts'","",""], ["GI List","window.top.location='/entrez/viewer.fcgi?list_uids=218217958&db=nuccore&dopt=gi '","",""], ["Graphic","window.top.location='?cmd=Show&doptcmdl =graph&db=nuccore&term=FJ549035'","",""], ["Revision History","window.top.location='/entrez/sutils/girevhist.cgi?val=FJ549035'","",""]]--></SCRIPT> </TD><TD vAlign=top align=right>
                              </TD></TR><TR><TD style="PADDING-LEFT: 2.8em" vAlign=top align=left colSpan=3>
                              gi|218217958|gb|FJ549035.1|[218217958] </TD></TR></TBODY></TABLE></DT></DL>

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