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Protein Sci . Structural basis for the interaction of SARS-CoV-2 virulence factor nsp1 with DNA Polymerase a - Primase

tetano

Editor, Senior Moderator
Protein Sci


. 2021 Oct 31.
doi: 10.1002/pro.4220. Online ahead of print.
Structural basis for the interaction of SARS-CoV-2 virulence factor nsp1 with DNA Polymerase a - Primase


Mairi L Kilkenny[SUP] 1 [/SUP], Charlotte E Veale[SUP] 1 [/SUP], Amir Guppy[SUP] 1 [/SUP], Steven W Hardwick[SUP] 1 [/SUP], Dimitri Y Chirgadze[SUP] 1 [/SUP], Neil J Rzechorzek[SUP] 1 [/SUP], Joseph D Maman[SUP] 1 [/SUP], Luca Pellegrini[SUP] 1 [/SUP]



Affiliations

Abstract

The molecular mechanisms that drive the infection by the severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2) - the causative agent of coronavirus disease 2019 (COVID-19) - are under intense current scrutiny, to understand how the virus operates and to uncover ways in which the disease can be prevented or alleviated. Recent proteomic screens of the interactions between viral and host proteins have identified the human proteins targeted by SARS-CoV-2. The DNA polymerase a (Pol a) - primase complex or primosome - responsible for initiating DNA synthesis during genomic duplication - was identified as a target of nsp1 (non structural protein 1), a major virulence factor in the SARS-CoV-2 infection. Here, we validate the published reports of the interaction of nsp1 with the primosome by demonstrating direct binding with purified recombinant components and providing a biochemical characterisation of their interaction. Furthermore, we provide a structural basis for the interaction by elucidating the cryoEM structure of nsp1 bound to the primosome. Our findings provide biochemical evidence for the reported targeting of Pol a by the virulence factor nsp1 and suggest that SARS-CoV-2 interferes with Pol a's putative role in the immune response during the viral infection. This article is protected by copyright. All rights reserved.

Keywords: DNA polymerase a - primase; SARS-CoV-2; cryoEM; nsp1; protein-protein interaction.
 
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