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Oseltamivir-Resistant Pandemic (H1N1) 2009 Virus from 2009-2013 (epi curve)

Biological

Closed. Please see Biological100
Still currently updating a few weeks but this will give a look at the epi curve of notified Oseltamivir-Resistant Pandemic (H1N1) 2009 Virus from 2009-2013!

Limitation- my own research!
 

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Re: Oseltamivir-Resistant Pandemic (H1N1) 2009 Virus from 2009-2013 (epi curve)

Quite a graph! Still looking....
 
Re: Oseltamivir-Resistant Pandemic (H1N1) 2009 Virus from 2009-2013 (epi curve)

Oseltamivir-resistant Pandemic (H1N1) 2009 Virus from 2009-2013 (epi curve) version 1.3

I posted a new table and ppt slides with all information concerning the updated new 77cases/country!

Please disregard all previous posts!
 

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Re: Oseltamivir-Resistant Pandemic (H1N1) 2009 Virus from 2009-2013 (epi curve)

Updated version 1.5 n=688
Updated 6 cases: 3 Dec 2013

1. Peru (1) Week 28 2012
2. Canada (1) Week 22 2013
3. Argentina (1) Week 17 2013
4. PHE (1) Weeks 2012-2013 by week 20 a total of 4 cases
5. USA (2) Week 47 2013

References:
Japan : Updated NIID website!
NIID – 2009-10 n=79/8145; 2010-11- n=69/3,844 (2-Nov-11) ; 2011-12- n=0 /11 ; 2012-13- n=2 /111; Interim 2013-14 0/9 tested (=150)
Antiviral resistance surveillance in Japan (as of November 18, 2013)
http://www.nih.go.jp/niid/en/influenza-e/2132-flu/flu-dr-e/4112-flu-dr-e20131118.html
Also see - NIID Antiviral-resistant B viruses with a novel mutation detected by antiviral resistance surveillance in Japan- Masaki Imai WHOCC
http://www.wpro.who.int/emerging_diseases/meetings/docs/AntiviralResistantBVirusesinJapan.pdf

Variance:
Changed Australia (A/Perth/33/2012) from 3 cases to 1 case in week 38 and updated Netherlands 2 A/Bilthoven/4311200706/2012 + A/Bilthoven/4361200003/2012) in week 38 2012
Meijer A, Jonges M, van Beek P, Swaan CM, Osterhaus AD, Daniels RS, Hurt AC, Koopmans MP. Oseltamivir-resistant influenza A(H1N1)pdm09 virus in Dutch travellers returning from Spain, August 2012. Euro Surveill. 2012;17(36):pii=20266.
http://www.eurosurveillance.org/images/dynamic/EE/V17N36/art20266.pdf

4 New retrospective updates:

Updated Peru ,1 case, week 28 2012 (IPE01397_Puna_Junio-2012 Peru July 2012)
Detection of an influenza a (H1N1) pdm09 strain resistant to Oseltamivir in Peru Rev Peru Med Exp Salud Publica vol.30 n.1 Lima Jan./Mar. 2013
http://www.scielosp.org/scielo.php?...1726-46342013000100039&lng=en&nrm=iso&tlng=en
H/T FluTrackers
http://www.flutrackers.com/forum/showthread.php?t=204716

Updated Canada, 1 case ,week 22- May 19 to June 1, 2013 (Weeks 21 & 22)
http://www.phac-aspc.gc.ca/fluwatch/12-13/w22_13/index-eng.php
FluWatch report: August 11 to August 24, 2013 (Weeks 33 & 34) - Public Health Agency of Canada
http://www.phac-aspc.gc.ca/fluwatch/12-13/w34_13/index-eng.php

Updated Argentina 1 case Week Unknown (1 case updated in May 2013)
Updated Recommendations Acute Respiratory Infections Argentina. Year 2013. (6-May-2013)A selection of virus A (H1N1) pdm, A (H3N2) and B were performed sensitivity studies to antivirals. All samples were susceptible to neuraminidase inhibitors than strain A (H1N1) pdm to which una was diagnosed a rare mutation that conferred resistance, confirmed by phenotypic and genotypic studies.
http://www.msal.gov.ar/images/stori...endaciones-infecciones-respiratorias-2013.pdf

Updated England, 1 in week 20 in 2013 (for a total of 4)
Public Health England: Surveillance of influenza and other respiratory viruses, including novel respiratory viruses, in the UK: Winter 2012-13
Surveillance of influenza and other respiratory viruses, including novel respiratory viruses, in the United Kingdom: Winter 2012/13 (PDF, 647 KB)
http://www.hpa.org.uk/Publications/InfectiousDiseases/Influenza/1306influseasonalannualreport/


1 Current update:
Updated USA 2 cases Week 47 6/217 (2.8%) http://www.cdc.gov/flu/weekly/pdf/External_F1347.pdf
 

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Re: Oseltamivir-Resistant Pandemic (H1N1) 2009 Virus from 2009-2013 (epi curve)

WHO European Region 2012 (week 40) -2013 (week 20)

Summary, week 20/2013
Monitoring of susceptibility to antiviral drugs (Total of 13 viruses)

Cumulatively since week 40/2012, 13 countries (Denmark, Germany, Greece, Ireland, the Netherlands, Norway, Portugal, Romania, the Russian Federation, Spain, Sweden, Switzerland and the United Kingdom) have screened 1540 viruses for susceptibility to the neuraminidase inhibitors oseltamivir and zanamivir.
Of the 743 A(H1N1)pdm09 viruses tested, 730 showed susceptibility to both drugs while 13 viruses (2%) carried the neuraminidase H275Y amino acid substitution, causing resistance to oseltamivir.

Of these 13 viruses,

1 from the Russian Federation was detected in a hospitalized patient not exposed to oseltamivir through treatment;

1 from Germany was detected in a hospitalized patient with unknown exposure to the neuraminidase inhibitors;

2 viruses from the United Kingdom were detected in outpatients not exposed to oseltamivir through treatment;

6 viruses were detected in hospitalized patients exposed to oseltamivir through treatment (1 from Denmark, 4 from Germany and 1 from Sweden)
and 3 viruses were detected in hospitalized immunocompromised patients exposed to oseltamivir through treatment (2 from the Netherlands and 1 from Switzerland).

The 378 influenza A(H3N2) viruses tested showed susceptibility to both drugs. Of the 419 influenza B viruses tested, 418 showed susceptibility to both drugs; 1 virus showing reduced inhibition by oseltamivir, and normal inhibition by zanamivir, was detected in the United Kingdom in an outpatient without exposure to antiviral treatment. There is no indication of the spread of resistant viruses.

The 110 influenza A(H1N1)pdm09 and 55 influenza A(H3N2) viruses screened for susceptibility to adamantanes were found to be resistant.
• EuroFlu - Bulletin Review
http://www.euroflu.org/cgi-files/bulletin_v2.cgi

Retrospective summary of oseltamivir resistant A(H1N1)pdm09 virus with the H275Y in Europe: during weeks 20-15 2012-2013 by EURO Flu bulletin notification week and exposure, (n=13)

•Week 4: Netherlands 1, oseltamivir therapy (hospitalised immunocompromised patient was identified carrying an oseltamivir resistant A(H1N1)pdm09 virus with the H275Y amino acid substitution. This resistant variant emerged during oseltamivir therapy and was detected shortly after oseltamivir was stopped and before zanamivir therapy was started. The patient was also treated with antibiotics for pneumonia due to Haemophilus influenza, thereof improved rapidly and was discharged 20 days after onset of respiratory symptoms.')

•Week 8: Netherlands (1) and Switzerland (1) both were hospitalised immunocompromised patients exposed to oseltamivir through treatment

•Week 9: United Kingdom (2) - 2 viruses from the United Kingdom were detected in outpatient patients not exposed to oseltamivir through treatment.

•Week 10: 1 virus from the Russian Federation was detected in a hospitalised patient; 2 viruses from Germany were detected in hospitalised immunocompromised patients exposed to oseltamivir through treatment.

•Week 11: 1 virus from Denmark was detected in hospitalised immunocompromised patients exposed to oseltamivir through treatment

•Week 14: 1 virus from Sweden was detected in hospitalised immunocompromised patients exposed to oseltamivir through treatment

•Week 15: 3 viruses from Germany - 2 viruses from Germany were detected in hospitalized patients exposed to oseltamivir through treatment and ; 1 from Germany was detected in a hospitalised patient with unknown exposure to the neuraminidase inhibitors

Note: This report only reports 2 cases/viruses in United Kingdom however in the recent update there was 4 viruses note by HPA/PHE (writers ver. 1.4)

Public Health England: Surveillance of influenza and other respiratory viruses, including novel respiratory viruses, in the UK: Winter 2012-13
Clip:
Antiviral resistance
Since week 40 2012, four unlinked sporadic influenza A(H1N1)pdm09 viruses have been found to be resistant to oseltamivir at RVU and regional laboratories in England; two following treatment with oseltamivir, and two from patients without any treatment history. Additionally, one influenza B virus with an I221T amino acid substitution was detected in a community specimen, without antiviral exposure. This virus exhibits reduced susceptibility to oseltamivir but retains sensitivity to zanamivir. Globally, WHO have reported only very low numbers of oseltamivir and zanamivir resistant viruses detected during the season.

Surveillance of influenza and other respiratory viruses, including novel respiratory viruses, in the United Kingdom: Winter 2012/13 (PDF, 647 KB)

I won't be updating graph until January 2014 but this gives an updated view of oseltamivir- resistant in Europe by exposure during the 2012-13 Influenza season.

Remember there is a time lag of Euro Flu reports compared to MOH reports!

Once I finalised weeks per MOH notification I'll update timeline!

Remains a work in progress....
 
Re: Oseltamivir-Resistant Pandemic (H1N1) 2009 Virus from 2009-2013 (epi curve)

Influenza surveillance in New Zealand 2012 (First published: 9 April 2013)
Clip:
Oseltamivir resistance monitoring New Zealand
The NIC at ESR employed a phenotypic method (fluorometric neuraminidase inhibition assay) for the surveillance of anti-viral drug resistance in influenza viruses. In addition, the NIC employed a molecular method (PCR and sequencing) to monitor the H275Y mutation (histidine-to-tyrosine mutation at the codon of 275 in N1 numbering) which confers resistance to oseltamivir.
In 2012, the fluorometric neuraminidase inhibition assay was used to test a total of 592 influenza viruses. All viruses (except two A(H1N1)pdm09 viruses) were sensitive to oseltamivir with mean IC50 values for A(H1N1)pdm09 at 0.33 nM, A(H3N2) at 0.4 nM and B at 13.3 nM (Table 10).

The first oseltamivir resistant influenza A(H1N1)pdm09 was detected from a 26 year old male who was hospitalised with acute upper respiratory infection within seven days of returning New Zealand from India. The results of the fluorometric neuraminidase inhibition assay indicated that the virus had highly reduced sensitivity to oseltamivir with IC50 value of 271 nM, 821 fold higher than the mean of IC50 value (0.32 nM). The sequencing analysis of the neuraminidase gene confirmed that the virus had the H275Y mutation (histidine-to-tyrosine at codon 275 in N1 nomenclature), conferring resistance to oseltamivir. In addition, this virus is genetically closer to the Indian A(H1N1)pdm09 viruses than the New Zealand A(H1N1)pdm09 viruses.

The second oseltamivir resistant influenza A(H1N1)pdm09 virus was detected from seven-month-old Samoan girl who was hospitalised with suspected pneumonia and had not travelled overseas prior to hospitalisation. The results of the fluorometric neuraminidase inhibition assay indicated that the virus had highly reduced sensitivity to oseltamivir with IC50 value of 316 nM, 958 fold higher than the mean of IC50 value (0.33 nM).

Both patients did not take any oseltamivir medication before and during hospitalisation.

This report is available at
Public Health Surveillance
https://surv.esr.cri.nz/surveillance/NZPHSR.php

https://surv.esr.cri.nz/PDF_surveil...fluenza in New Zealand 2012 FINAL Updated.pdf
 
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