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J Virol . An RGD motif on SARS-CoV-2 Spike induces TGF-β signaling and downregulates interferon

tetano

Editor, Senior Moderator
J Virol


. 2025 Sep 4:e0043525.
doi: 10.1128/jvi.00435-25. Online ahead of print. An RGD motif on SARS-CoV-2 Spike induces TGF-β signaling and downregulates interferon

Nicholas P Gracie[SUP] 1 [/SUP], Anupriya Aggarwal[SUP] 2 [/SUP], Rachel Luo[SUP] 1 [/SUP], Mitchell Spicer[SUP] 3 [/SUP], Sobia Idrees[SUP] 3 4 [/SUP], Caroline L Ashley[SUP] 5 [/SUP], Sibel Alca[SUP] 5 [/SUP], Timothy Ison[SUP] 2 [/SUP], Megan C Steain[SUP] 5 6 [/SUP], Karishma Patel[SUP] 1 [/SUP], Rezwan Siddiquee[SUP] 1 [/SUP], Jason K K Low[SUP] 1 [/SUP], Joel P Mackay[SUP] 1 [/SUP], Christopher E Denes[SUP] 1 7 [/SUP], G Gregory Neely[SUP] 1 7 [/SUP], Alen Faiz[SUP] 3 [/SUP], Stuart G Turville[SUP] 2 [/SUP], Timothy P Newsome[SUP] 1 6 [/SUP]



Affiliations
Abstract

The severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2) spike (S) protein mediates canonical cell entry via ACE2 and has also been implicated as an activator of a diverse range of signaling pathways. Here, we present evidence that the RGD (Arg-Gly-Asp) motif within the receptor-binding domain (RBD) of the S1 fragment of the S protein induces TGF-β cytokine expression. RGD peptides are well characterized as ligands for a subset of integrin complexes primarily containing α5 and αV subunits. In this study, we investigate the molecular basis of TGF-β pathway activation by S protein, delivered to cells as recombinant protein, in pseudotyped virus or in virally infected cells. Activation of TGF-β signaling by the S protein requires ACE2 and leads to SMAD3-dependent expression of the pro-fibrotic marker PAI-1. Utilizing pseudotyped viruses, expression of the S protein with a mutated RGD motif abolished TGF-β signaling, as did the RGD antagonist ATN-161, implicating integrin complexes in mediating this response. We show that the S protein RGD motif suppresses IFN-β expression via TGF-β, leading to a disruption in cellular antiviral defenses, consistent with TGF-β's role in immunosuppression. These findings further support the multifunctionality of S protein and provide mechanistic insights into its activity as a virulence factor during infection.
Importance: Severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2) presents an ongoing public health challenge as a cause of acute illness and post-acute sequelae of COVID-19 (PASC, or long COVID). Our study identifies the RGD integrin-binding motif in the spike (S) protein as central to the cellular response to SARS-CoV-2, leading to the expression of the pleiotropic cytokine TGF-β and disabling of antiviral immunity. This work further supports the S protein-to-integrin complex signaling axis as a potential therapeutic target. The RGD motif might also be a valid target for treating PASC given the increasing body of evidence implicating the presence of persistent S protein in the etiology of this disease.

Keywords: COVID-19; IFN-β; PAI-1; RGD (Arg-Gly-Asp); SARS-CoV-2; TGF-β; coronavirus; integrins.

 
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