GenBank-First released 2013 H5N2 (Chicken) from Nanjing, Jiangsu

[Biological]

GenBank-First released 2013 H5N2 (Chicken) from Nanjing, Jiangsu
A/chicken/Jiangsu/1001/2013
Type/subtype A/H5N2
Sample collection date 2013-04-12
Host Animal - Gallus gallus - Chicken
Isolation source feces
Location China - Nanjing
First submission 2013-06-12
Last update 2013-06-12

http://www.ncbi.nlm.nih.gov/nuccore/KF150634
http://www.ncbi.nlm.nih.gov/nuccore/KF150636

Sporadic cases occurred since

GenBank Earlier released H5N2 in China
A/duck/Jiangsu/m234/2012
A/goose/Eastern China/1112/2011
A/duck/Eastern China/1111/2011
A/chicken/Hebei/1102/2010
A/chicken/Tibet/LZ01/2010
A/duck/Hebei/0908/2009
A/duck/Hebei/0710/2009
A/dog/Shandong/JT01/2009
A/common teal/Shanghai/1F/2007
A/mallard/Xuyi/10/2005
A/spotbill duck/Xuyi/18/2005
A/goose/Gui Yang/3799/2005
A/duck/Jiang Xi/1850/2005
A/duck/Jiang Xi/1286/2005
A/migratory duck/Hong Kong/MP206/2004
A/duck/Eastern China/64/2004
A/duck/Eastern China/264/2002
A/duck/Eastern China/01/2001
A/duck/Eastern China/06/2000

Not an exclusive list!

 

[gsgs]

Re: GenBank-First released 2013 H5N2 (Chicken) from Nanjing, Jiangsu

6 segments from H9N2, HA and MP from H5N1
common ancestor ~2009

>A/chicken/Jiangsu/1001/2013,2013/04/12,China,H5N2
{12,19,22,-,13,-,18,33} {:differences from the bird-index in the 8 segments}


differences in 1/100 percent
total nucleotide differences
nucleotides available
number in file
sequence-name

----------segment 1------------- 
 198   45 2262 6726 >A/chicken/Qianzhou/12/2010,2010/12/18,H9N2
 219   50 2280 6141 >A/chicken/Shandong/02/2010,2010/02/,H9N2
 223   51 2280 6144 >A/chicken/Shandong/BD/2010,2010/05/,H9N2
 223   51 2280 6823 >A/chicken/Jiangsu/Q3/2010,2010/02/,H9N2
 241   55 2280 6145 >A/chicken/Shandong/H/2009,2009/05/,H9N2
----------segment 2------------- 
 185   41 2213 6755 >A/chicken/Jiawang/2/2011,2011/02/15,H9N2
 216   48 2213 6758 >A/chicken/Tongshan/1/2011,2011/01/31,H9N2
 221   49 2213 6759 >A/chicken/Yongcheng/1/2011,2011/01/31,H9N2
 228   52 2274 6849 >A/chicken/Jiangsu/Q3/2010,2010/02/,H9N2
 244   54 2213 6750 >A/chicken/Wuxi/7/2010,2010/07/10,H9N2
----------segment 3------------- 
 181   39 2151 5920 >A/chicken/Shandong/02/2010,2010/02/,H9N2
 213   46 2151 6592 >A/chicken/Zhejiang/Q1D4/2010,2010/02/,H9N2
 223   47 2102 6500 >A/chicken/Yongcheng/1/2011,2011/01/31,H9N2
 237   51 2151 6591 >A/chicken/Jiangsu/Q3/2010,2010/02/,H9N2
 241   52 2151 5923 >A/chicken/Shandong/BD/2010,2010/05/,H9N2
----------segment 4------------- 
 316   54 1704 2198 >A/chicken/Vietnam/NCVD-093/2008,2008//,H5N1
 352   60 1704 2195 >A/chicken/Vietnam/NCVD-swab15/2008,2008//,H5N1
 357   61 1704 2196 >A/chicken/Vietnam/NCVD-swab17/2008,2008//,H5N1
 357   61 1704 2197 >A/chicken/Vietnam/NCVD-swab18/2008,2008//,H5N1
 369   35  947 3005 >A/chicken/Jiangsu/Q305/2008,2008/10/,H5
----------segment 5------------- 
 148   22 1478 6580 >A/chicken/Jiawang/2/2011,2011/02/15,H9N2
 148   22 1478 6584 >A/chicken/Yongcheng/1/2011,2011/01/31,H9N2
 189   28 1478 6570 >A/chicken/Xiangshui/1/2011,2011/01/31,H9N2
 207   31 1497 5988 >A/chicken/Shandong/KD/2009,2009/01/,H9N2
 207   31 1497 8446 >A/brambling/Beijing/16/2012,2012/11/07,H9N2
----------segment 6------------- 
 237   28 1177 4702 >A/chicken/Shanghai/Y2/2008,2008//,H9N2
 256   36 1401 6315 >A/chicken/Jiande/01/2009,2009/11/20,H9N2
 256   36 1401 7622 >A/chicken/Shandong/BD/2010,2010/05/,H9N2
 264   37 1401 7619 >A/chicken/Shandong/02/2010,2010/02/,H9N2
 264   37 1401 8292 >A/chicken/Xiangshui/1/2011,2011/01/31,H9N2
----------segment 7------------- 
 213   21  982 8494 >A/chicken/Huadong/4/2008,2008/12/,H5N1
 234   23  982 2211 >A/chicken/Hebei/102/2005,2005//,H5N1
 234   23  982 2762 >A/mallard/Huadong/hn/2005,2005//,H5N1
 234   23  982 5791 >A/chicken/Jiangsu/18/2008,2008//,H5N1
 254   25  982 1357 >A/chicken/Hebei/326/2005,2005//,H5N1
----------segment 8------------- 
 107    9  838 5691 >A/chicken/Jiangsu/Q3/2010,2010/02/,H9N2
 121    8  660 3413 >A/chicken/Shanghai/Y2/2008,2008//,H9N2
 131   11  838 5179 >A/chicken/Shandong/03/2010,2010/05/,H9N2
 131   11  838 5600 >A/chicken/Tongshan/1/2011,2011/01/31,H9N2
 143   12  838 5181 >A/chicken/Shandong/BD/2010,2010/05/,H9N2