7,3,6,-,4,-,2,3 amino acids away from the bird-index
NL/2003(H7N7) was closer with 2,1,4,-,3,-,2,3
CDN/2004(H7N3) was 3,4,9,-,3,1,2
1918 flu had 8,7,10,-,9,-,7,5
and Qinghai H5N1 was 9,8,10,-7,-14,18
closest neighbors in the 8 segments:
Code:
135 31 2280 7410 >A/mallard/California/198/2012,2012/01/07,H11N9 140 32 2280 6323 >A/northern pintail/California/3466/2010,2010/12/08,H1N3 140 32 2280 7413 >A/mallard/California/3569/2010,2010/12/18,H1N3 57 13 2274 7345 >A/American green-winged teal/Mississippi/11OS98/2011,2011/01/08,mixed 92 21 2274 7383 >A/American green-winged teal/Wisconsin/10OS3127/2010,2010/10/20,H5N2 92 21 2274 7528 >A/bufflehead/California/3118/2011,2011/12/07,H4N8 92 21 2274 7530 >A/green-winged teal/California/123/2012,2012/01/07,H1N1 105 24 2274 6459 >A/mallard/California/2396/2010,2010/10/30,H5N2 114 26 2274 7484 >A/mallard/California/2535P/2011,2011/08/12,H5N1 120 26 2151 8662 >A/green-winged teal/California/123/2012,2012/01/07,H1N1 134 29 2151 6871 >A/mallard/Alberta/115/2007,2007/08/22,mixed 167 36 2151 6391 >A/American green-winged teal/Mississippi/300/2010,2010/01/16,H11N9 94 16 1688 1110 >A/American black duck/Wisconsin/10OS3949/2010,2010/11/18,H7N8 100 17 1688 1098 >A/mallard/Missouri/10MO0551/2010,2010/12/29,H7N7 100 17 1688 1102 >A/northern shoveler/Arkansas/11OS333/2011,2011/01/12,H7 106 18 1688 1116 >A/northern shoveler/Missouri/10OS4750/2010,2010/12/12,H7N3 106 18 1688 1117 >A/northern shoverl/Mississippi/11OS145/2011,2011/01/08,H7N9 112 19 1688 1118 >A/American green-winged teal/Mississippi/11OS247/2011,2011/01/15,H7 80 12 1497 8356 >A/American green-winged teal/Mississippi/11OS259/2011,2011/01/15,mixed 86 13 1497 8323 >A/mallard/Iowa/10OS2721/2010,2010/10/16,H2N2 86 13 1497 8324 >A/American wigeon/Iowa/10OS2748/2010,2010/10/17,H2N2 86 13 1497 8331 >A/mallard/Illinois/10OS4179/2010,2010/11/29,H11N2 93 14 1497 8219 >A/mallard/California/2525V/2011,2011/08/12,mixed 93 14 1497 8347 >A/American green-winged teal/Mississippi/11OS90/2011,2011/01/08,H11N9 93 14 1497 8384 >A/mallard/California/2525P/2011,2011/08/12,H4N6 276 39 1410 600 >A/American green-winged teal/Illinois/10OS3343/2010,2010/10/30,H2N3 297 42 1410 437 >A/mallard/Wisconsin/2560/2009,2009/10/05,H2N3 304 43 1410 431 >A/blue-winged teal/Wisconsin/2572/2009,2009/10/06,H2N3 112 11 982 8119 >A/mallard/Ohio/11OS2239/2011,2011/08/19,H5N2 122 12 982 8073 >A/mallard/Ohio/11OS2237/2011,2011/08/19,mixed 83 7 838 6536 >A/mallard/Illinois/10OS3786/2010,2010/11/27,H10N7 107 9 838 5851 >A/northern shoveler/California/3183/2010,2010/11/27,H11N2 107 9 838 6588 >A/northern shoveler/Missouri/10OS4718/2010,2010/12/12,H10N7
Leave a comment: