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Virology for Beginners

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  • Virology for Beginners

    I found this site with the following lecture. As you see, it's a little old but most of the information is easy to understand because it's basic. There is one group of lectures on viruses and one on bacteria. Here's the summary from the first short lecture: The General Properties of Viruses
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    MEDICAL MICROBIOLOGY FALL 2000
    Dr. Tritz's Lectures
    Professor and Chairman of the Department of Microbiology/Imunology
    Kirksville College of Osteopathic Medicine

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    1. Viruses contain either DNA or RNA as their genetic material, but not both. This nucleic acid usually has unique chemical and/or physical features which makes it distinguishable from human nucleic acid.

    2. Viral nucleic acid is enclosed in a capsid made up of protein subunits called protomeres.

    3. Some species of viruses have a membrane, the envelope, surrounding the capsid; other species do not have an envelope, i.e., they are naked. Enveloped viruses have glyco-protein spikes arising from their envelope. These spikes have enzymatic, absorptive, hemagglutinating and/or antigenic activity.

    4. The morphology of a virus is determined by the arrangement of the protomeres. When protomeres aggregate into units of five or six (capsomeres) and then condense to form a geometric figure having 20 equal triangular faces and 12 apices, the virus is said to have icosahedral (cubic) morphology. When protomeres aggregate to form a capped tube, they are said to have helical morphology. Any other arrangement of the protomeres results in a complex morphology.

    5. All viruses undergo a replication cycle in their human host cell consisting of adsorption, penetration, uncoating, nucleic acid replication, maturation and release stages.

    6. During the viral replication cycle, an accumulation of mature viruses, incomplete viruses and viral parts occurs within the cell. This accumulation is the inclusion body. The size, shape, location and chemical properties of the inclusion body are used by the pathologist to diagnose viral infectious disease.

    7. A virally-infected cell generally presents three signals that it is infected. The first is the production of double-stranded RNA, which induces interferon; the second is the expression of viral protein on the surface of the plasma membrane, thus causing activation of cytotoxic T-cells, natural killer cells and sometimes induction of antibody synthesis. The third is the formation of an inclusion body either within the cytoplasm or the nucleus or very rarely within both the cytoplasm and nucleus.

    8. In general, all DNA-containing viruses replicate in the host cell nucleus. The exceptions to the rule are the poxviruses.

    9. In general, all RNA-containing viruses replicate in the host cell cytoplasm. The exceptions to the rule are the retroviruses and the orthomyxoviruses.
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    From one of the other lectures:
    Antibodies to the ribonucleoprotein (RNP) are used to differentiate the three major types of influenza virus (A, B or C).

    Each of these types may have antigenic variants;
    these are designated A1, A2 ... or B1, B2, ... or C1, C2, ...

    The hemagglutinin spikes are labelled H1, H2 ... for antigenic variants
    The neuraminidase spikes are labelled N1, N2 ... for antigenic variants.

    Present terminology of influenza virus type A strains designates the geographic area where the strain was first isolated, the year it was isolated and the antigenic composition of its hemagglutinin and neuraminidase. Thus, an H2 N1 strain of the influenza A1 virus first isolated in Missouri in 1984 would be designated: A1/Missouri/84 (H2N1)

    1. There are 19 families of viruses that are defined by chemical type of nucleic acid, capsid symmetry, presence or absence of an envelope, number of capsomeres, physical type of nucleic acid and number of genes.
    The salvage of human life ought to be placed above barter and exchange ~ Louis Harris, 1918

  • #2
    Re: Virology for Beginners

    Thanks Mixin!

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    • #3
      Re: Virology for Beginners

      Perfect!! Now I know what the heck you guys are talking about...thanks very much.

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      • #4
        Re: Virology for Beginners

        I liked the simple explanation here on how viruses attach and replicate.

        In humans, influenza infection occurs via the respiratory tract, or airway. In order to cause disease, the virus must enter the body's cells where it can replicate and spread, but it must first find a site to which it can attach, known as a receptor. The virus can only attach to and enter the cells if the receptor fits into the binding proteins, or haemagglutinins (the "H" in H5N1), on the surface of the virus.

        Previous research has shown that the haemagglutinin on H5N1 favours a particular form of receptor known as a "2,3 receptor". These are abundant on cells of birds, but in humans are found mostly on cells of the lower respiratory tract (the lungs). Professor Feizi and colleagues have shown that mucus in the upper airway in humans also contains 2,3 receptors, but here the mucus acts as a defence mechanism to which the virus binds, blocking its progress and enabling the body to "sweep out" the virus. Both factors suggest that huge doses of the virus are required in order to infect humans, a theory supported by evidence that those who have become infected have spent large amounts of time in close proximity to infected fowl.

        As with all viruses, H5N1 is continually mutating, and it is changes that allow the virus to attach to "2,6 receptors" in the human upper airway which may enable the virus to become more infectious to humans.

        The salvage of human life ought to be placed above barter and exchange ~ Louis Harris, 1918

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        • #5
          Re: Virology for Beginners



          Nature Magazine Dec. 2008
          There is a pressing need for antiviral agents that are effective against multiple classes of viruses. Broad specificity might be achieved by targeting phospholipids that are widely expressed on infected host cells or viral envelopes. We reasoned that events occurring during virus replication (for example, cell activation or preapoptotic changes) would trigger the exposure of normally intracellular anionic phospholipids on the outer surface of virus-infected cells. A chimeric antibody, bavituximab, was used to identify and target the exposed anionic phospholipids. Infection of cells with Pichinde virus (a model for Lassa fever virus, a potential bioterrorism agent) led to the exposure of anionic phospholipids. Bavituximab treatment cured overt disease in guinea pigs lethally infected with Pichinde virus. Direct clearance of infectious virus from the blood and antibody-dependent cellular cytotoxicity of virus-infected cells seemed to be the major antiviral mechanisms. Combination therapy with bavituximab and ribavirin was more effective than either drug alone. Bavituximab also bound to cells infected with multiple other viruses and rescued mice with lethal mouse cytomegalovirus infections. Targeting exposed anionic phospholipids with bavituximab seems to be safe and effective. Our study demonstrates that anionic phospholipids on infected host cells and virions may provide a new target for the generation of antiviral agents.
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          1. Department of Pharmacology, 6001 Forest Park Road, University of Texas Southwestern Medical Center, Dallas, Texas 75390-9041, USA.
          2. Peregrine Pharmaceuticals Inc., 14272 Franklin Avenue, Tustin, California 92780, USA.

          Correspondence to: Philip E Thorpe1 e-mail: Philip.Thorpe@UTSouthwestern.edu

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