Idaho bird farm quarantined after low-pathogenic bird virus found

[Shiloh]

Source: http://www.montanasnewsstation.com/G...&nav=menu227_8

Idaho bird farm quarantined after bird virus found

Associated Press - September 4, 2008 11:34 AM ET

BOISE, Idaho (AP) - A southwestern Idaho bird farm has been quarantined after a bird there was found to have a low-pathogenic bird flu, but Idaho Department of Agriculture officials say it is not the same bird flu virus that has spread through birds in Asia, Europe and Africa.

According to a statement from the Agriculture Department, the type of virus found in the Idaho game bird is commonly found in wild birds and normally causes only minor illness in the animals. The statement said the virus poses little or no risk to human health and it's not believed that any people have gotten sick in connection with the ill bird.

The Agriculture Department quarantined the farm and will test the flock, investigate the source of the illness and notify neighboring gamebird and poultry farms.

[HenryN]

Re: Idaho bird farm quarantined after low-pathogenic bird virus found

Immediate notification report

Report reference: , Ref OIE: 7319, Report Date: 03/09/2008 , Country: United States of America

Report Summary

Disease

Low pathogenic avian influenza (poultry) Animal type Terrestrial

Causal Agent

Low pathogenic avian influenza virus Serotype(s) H5N8

Clinical Signs

No Reason Reoccurrence of a listed disease

Date of first confirmation of the event

02/09/2008 Date of Start of Event 25/08/2008

Date of report

03/09/2008 Date Submitted To OIE 04/09/2008

Diagnosis

Laboratory (advanced) Date Of Last Occurrence 07/2008

Number Of Reported Outbreaks

Submitted= 1, Draft= 0 Name of Sender of the report Dr. Stan Bruntz

Address

2150 Centre Ave, Bldg B
Fort Collins, Colorado 80526-8117 Fort Collins 80526-8117

Position

National Surveillance Unit epidemiologist

Telephone

970 494 7246

Fax

970 494 7174

Email

Stanley.D.Bruntz@aphis.usda.gov

Entered by

Mme Margarita Alonso

Outbreak (this report - submitted)

IDAHO Payette County Unit Type Location Latitude Longitude Start End

IDAHO Payette County Farm Payette County 43,7517 -116,665 25/08/2008

Species Measuring units Susceptible Cases Deaths Destroyed Slaughtered

Birds Animals 30000 ... ... 0 0

Affected Population

Approximately 30,000 game birds (pheasants, chukars, partridges, mallard ducks) which are bred and used for release activities (hunting).
? There is no report of major mortality losses in the game birds.
? At this time, the positive results only trace back to the pheasant pen (approximately 1,000 pheasants).
? The game birds were last reported to be PCR negative on AI testing performed in July 2008.

Outbreak summary: Total outbreaks = 1 (Submitted)

Species Susceptible Cases Deaths Destroyed Slaughtered

Birds 30000 0 0

Epidemiology

Epidemiological comments

? The game bird owner recently submitted three dead birds to the Pennsylvania Animal Diagnostic Laboratory and Pennsylvania State University (PSU) for diagnostic work-up.
? The PSU laboratory identified Pasturella and Mycoplasma from culture but also ran the PCR test for avian influenza (AI), which is a routine testing procedure. The PCR test gave positive results for AI. Samples were also forwarded to the National Veterinary Services Laboratories (NVSL) for
confirmation.
Printed on: Thu Sep 4 18:40:58 Paris, Madrid (heure d'?t?) 2008 Page 1/3
? 29 August 2008: the NVSL confirmed an H5 positive, N1 negative PCR finding.
? The premises was quarantined by the Idaho Department of Agriculture on 29 August 2008.
? Enhanced surveillance and epidemiological investigation of the game bird premises began on 29 August 2008 by the Idaho Department of Agriculture officials, in conjunction with USDA APHIS Veterinary Services personnel.
? 2 September 2008: the NVSL confirmed and reported an H5N8 positive virus from samples taken from pheasants on the game bird premises.
? 3 September 2008: sequencing results from NVSL were compatible with low pathogenic avian influenza. The sequence is approximately 98.5% similar to A/mallard/BC/373/2005 H5N2 and 98.3% similar to A/tundra swan/AK/44049-168/2006 H5N2.
Note by the OIE Animal Health Information Department: H5 and H7 avian influenza in its low pathogenic form in poultry is a notifiable disease as per Chapter 2.7.12. on avian influenza of the Terrestrial Animal Health Code.

Source of the outbreak(s) or origin of infection

? Contact with wild species

Control Measures

Applied

? Quarantine To be applied ? Disinfection of infected premises/establishment(s)

Animals treated

No Vaccination Prohibited Yes

Country / Zone

Country or zone

a zone or compartment

Diagnostic test results

Laboratory Type Name of Laboratory Species Test Type Date Results Provided Result

National laboratory NVSL Birds virus sequencing 03/09/2008 Positive
National laboratory NVSL Birds virus isolation 02/09/2008 Positive
National laboratory NVSL Birds neuraminidase inhibition assay 02/09/2008 Positive
National laboratory NVSL Birds haemagglutination inhibition test (HIT) 02/09/2008 Positive
National laboratory National Veterinary Services Laboratories (NVSL) Birds real-time reverse transcriptase/polymerase chain reaction (RRT-PCR) 02/09/2008 Positive
Local laboratory Pennsylvania Animal Diagnostic Lab Birds polymerase chain reaction (PCR) 27/08/2008 Positive

Future Reporting

What further reports will be submitted in relation to this event?

There are 1outbreaks that are still recorded as unresolved. It is not possible to declare this event resolved until these individual outbreaks are resolved.

The event is continuing. Weekly follow-up reports will be submitted.

http://www.oie.int/wahid-prod/reports/en_imm_0000007319_20080904_184058.pdf

[HenryN]

Re: Idaho bird farm quarantined after low-pathogenic bird virus found

Updated map

http://maps.google.com/maps/ms?ie=UTF8&t=h&hl=en&msa=0&msid=106484775090296685271.00044f63f4b32d9c8db28&ll=43.751428,-116.665642&spn=0.970154,1.507874&z=9

[AlaskaDenise]

Re: Idaho bird farm quarantined after low-pathogenic bird virus found

Given that the predominant AI in 2006 migratory bird testing here (Alaska) was H3N8, are we seeing a reassort of H5Nx with the H3N8 of cross-continent migratory birds?

What NA most closely matches the N8 here?

.

[HenryN]

Re: Idaho bird farm quarantined after low-pathogenic bird virus found

Given that the predominant AI in 2006 migratory bird testing here (Alaska) was H3N8, are we seeing a reassort of H5Nx with the H3N8 of cross-continent migratory birds?

What NA most closely matches the N8 here?

.

There is a lot of ressortment in wild birds as seen by the various N's (N1, N2, N3, N5, N7) in isolates which are most closely related to the H5 in these birds

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</TD></TR><TR><TD style="PADDING-LEFT: 2.8em" vAlign=top align=left colSpan=3>Influenza A virus (A/mallard/BC/373/2005(H5N2)) hemagglutinin gene, complete cds
gi|145974668|gb|DQ826532.3|[145974668]


</TD></TR></TBODY></TABLE><!--docsumok 113704456 113704456 1 1710-->


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</TD></TR><TR><TD style="PADDING-LEFT: 2.8em" vAlign=top align=left colSpan=3>
gi|113704456|gb|DQ826532.2|[113704456]
The record has been replaced by DQ826532.3

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</TD></TR><TR><TD style="PADDING-LEFT: 2.8em" vAlign=top align=left colSpan=3>Influenza A virus (A/American green-winged teal/California/HKWF609/2007(H5N2)) segment 4 sequence
gi|194310659|gb|CY033444.1|[194310659]


</TD></TR></TBODY></TABLE></DT></DL>


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gi|157169385|gb|EF607884.1|[157169385]


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gi|195958047|gb|EU980494.1|[195958047]


</TD></TR></TBODY></TABLE></DT></DL>


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</TD><TD vAlign=top align=right>
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</TD></TR><TR><TD style="PADDING-LEFT: 2.8em" vAlign=top align=left colSpan=3>Influenza A virus (A/mallard/MD/866/2002(H5N2)) hemagglutinin gene, complete cds
gi|157169357|gb|EF607869.1|[157169357]


</TD></TR></TBODY></TABLE></DT></DL>


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</TD><TD vAlign=top align=right>
<SCRIPT language=JavaScript1.2><!-- var Menu124378381 = [ ["UseLocalConfig", "jsmenu3Config", "", ""], ["Full text in PMC" , "window.top.location='/sites/entrez?Db=pmc&DbFrom=nuccore&Cmd=Link&LinkName=nuc core_pmc&LinkReadableName=Full%20text%20in%20PMC&I dsFromResult=124378381&ordinalpos=7&itool=EntrezSy stem2.PEntrez.Nuccore.Sequence_ResultsPanel.Sequen ce_RVDocSum' ", "", ""], ["Protein" , "window.top.location='/sites/entrez?Db=protein&DbFrom=nuccore&Cmd=Link&LinkName =nuccore_protein&LinkReadableName=Protein&IdsFromR esult=124378381&ordinalpos=7&itool=EntrezSystem2.P Entrez.Nuccore.Sequence_ResultsPanel.Sequence_RVDo cSum' ", "", ""], ["PubMed" , "window.top.location='/sites/entrez?Db=pubmed&DbFrom=nuccore&Cmd=Link&LinkName= nuccore_pubmed&LinkReadableName=PubMed&IdsFromResu lt=124378381&ordinalpos=7&itool=EntrezSystem2.PEnt rez.Nuccore.Sequence_ResultsPanel.Sequence_RVDocSu m' ", "", ""], ["Taxonomy" , "window.top.location='/sites/entrez?Db=taxonomy&DbFrom=nuccore&Cmd=Link&LinkNam e=nuccore_taxonomy&LinkReadableName=Taxonomy&IdsFr omResult=124378381&ordinalpos=7&itool=EntrezSystem 2.PEntrez.Nuccore.Sequence_ResultsPanel.Sequence_R VDocSum' ", "", ""], ["Related Sequences" , "window.top.location='/sites/entrez?Db=nuccore&DbFrom=nuccore&Cmd=Link&LinkName =nuccore_nuccore&LinkReadableName=Related%20Sequen ces&IdsFromResult=124378381&ordinalpos=7&itool=Ent rezSystem2.PEntrez.Nuccore.Sequence_ResultsPanel.S equence_RVDocSum' ", "", ""] ] --></SCRIPT>Links

</TD></TR><TR><TD style="PADDING-LEFT: 2.8em" vAlign=top align=left colSpan=3>Influenza A virus (A/mallard/MB/458/2005(H5)) hemagglutinin (HA) gene, complete cds
gi|124378381|gb|EF205596.1|[124378381]


</TD></TR></TBODY></TABLE></DT></DL>


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</TD><TD vAlign=top align=right>
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</TD></TR><TR><TD style="PADDING-LEFT: 2.8em" vAlign=top align=left colSpan=3>Influenza A virus (A/mallard/MD/865/2002(H5N2)) hemagglutinin gene, complete cds
gi|157169337|gb|EF607859.1|[157169337]


</TD></TR></TBODY></TABLE></DT></DL>


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</TD><TD vAlign=top align=right>
<SCRIPT language=JavaScript1.2><!-- var Menu32165571 = [ ["UseLocalConfig", "jsmenu3Config", "", ""], ["Protein" , "window.top.location='/sites/entrez?Db=protein&DbFrom=nuccore&Cmd=Link&LinkName =nuccore_protein&LinkReadableName=Protein&IdsFromR esult=32165571&ordinalpos=9&itool=EntrezSystem2.PE ntrez.Nuccore.Sequence_ResultsPanel.Sequence_RVDoc Sum' ", "", ""], ["Taxonomy" , "window.top.location='/sites/entrez?Db=taxonomy&DbFrom=nuccore&Cmd=Link&LinkNam e=nuccore_taxonomy&LinkReadableName=Taxonomy&IdsFr omResult=32165571&ordinalpos=9&itool=EntrezSystem2 .PEntrez.Nuccore.Sequence_ResultsPanel.Sequence_RV DocSum' ", "", ""], ["Related Sequences" , "window.top.location='/sites/entrez?Db=nuccore&DbFrom=nuccore&Cmd=Link&LinkName =nuccore_nuccore&LinkReadableName=Related%20Sequen ces&IdsFromResult=32165571&ordinalpos=9&itool=Entr ezSystem2.PEntrez.Nuccore.Sequence_ResultsPanel.Se quence_RVDocSum' ", "", ""] ] --></SCRIPT>Links

</TD></TR><TR><TD style="PADDING-LEFT: 2.8em" vAlign=top align=left colSpan=3>Influenza A virus (A/unknown/NY/9899-6/01(H5N2)) hemagglutinin (HA) gene, complete cds
gi|32165571|gb|AY296075.1|[32165571]


</TD></TR></TBODY></TABLE></DT></DL>


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Reports<SCRIPT language=JavaScript1.2><!--var PopUpMenu2_LocalConfig_Reports159149087 = [ ["TitleText","Reports"]];var Reports159149087 = [ ["UseLocalConfig","Reports159149087","",""], ["ASN.1","window.top.location='/entrez/viewer.fcgi?list_uids=159149087&db=nuccore&dopt=as n'","",""], ["XML","window.top.location='/entrez/viewer.fcgi?list_uids=159149087&db=nuccore&dopt=xm l'","",""], ["Summary","window.top.location='/entrez/viewer.fcgi?list_uids=159149087&db=nuccore&dopt=do csum'","",""], ["Brief","window.top.location='/entrez/viewer.fcgi?list_uids=159149087&db=nuccore&dopt=br ief'","",""], ["FASTA","window.top.location='/entrez/viewer.fcgi?list_uids=159149087&db=nuccore&dopt=fa sta'","",""], ["TinySeq XML","window.top.location='/entrez/viewer.fcgi?list_uids=159149087&db=nuccore&dopt=fa sta_xml'","",""], ["GenBank","window.top.location='/entrez/viewer.fcgi?list_uids=159149087&db=nuccore&dopt=gb '","",""], ["INSDSeq XML","window.top.location='/entrez/viewer.fcgi?list_uids=159149087&db=nuccore&dopt=gb c_xml'","",""], ["GenBank(Full)","window.top.location='/entrez/viewer.fcgi?list_uids=159149087&db=nuccore&dopt=gb withparts'","",""], ["GI List","window.top.location='/entrez/viewer.fcgi?list_uids=159149087&db=nuccore&dopt=gi '","",""], ["Graphic","window.top.location='?cmd=Show&doptcmdl =graph&db=nuccore&term=AY296077'","",""], ["Revision History","window.top.location='/entrez/sutils/girevhist.cgi?val=AY296077'","",""]]--></SCRIPT>

</TD><TD vAlign=top align=right>
<SCRIPT language=JavaScript1.2><!-- var Menu159149087 = [ ["UseLocalConfig", "jsmenu3Config", "", ""], ["Protein" , "window.top.location='/sites/entrez?Db=protein&DbFrom=nuccore&Cmd=Link&LinkName =nuccore_protein&LinkReadableName=Protein&IdsFromR esult=159149087&ordinalpos=10&itool=EntrezSystem2. PEntrez.Nuccore.Sequence_ResultsPanel.Sequence_RVD ocSum' ", "", ""], ["Taxonomy" , "window.top.location='/sites/entrez?Db=taxonomy&DbFrom=nuccore&Cmd=Link&LinkNam e=nuccore_taxonomy&LinkReadableName=Taxonomy&IdsFr omResult=159149087&ordinalpos=10&itool=EntrezSyste m2.PEntrez.Nuccore.Sequence_ResultsPanel.Sequence_ RVDocSum' ", "", ""], ["Related Sequences" , "window.top.location='/sites/entrez?Db=nuccore&DbFrom=nuccore&Cmd=Link&LinkName =nuccore_nuccore&LinkReadableName=Related%20Sequen ces&IdsFromResult=159149087&ordinalpos=10&itool=En trezSystem2.PEntrez.Nuccore.Sequence_ResultsPanel. Sequence_RVDocSum' ", "", ""] ] --></SCRIPT>Links

</TD></TR><TR><TD style="PADDING-LEFT: 2.8em" vAlign=top align=left colSpan=3>Influenza A virus (A/Duck/NJ/117228-7/2001(H5N2)) segment 4 hemagglutinin (HA) gene, complete cds
gi|159149087|gb|AY296077.2|[159149087]


</TD></TR></TBODY></TABLE></DT></DL>


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Reports<SCRIPT language=JavaScript1.2><!--var PopUpMenu2_LocalConfig_Reports146746663 = [ ["TitleText","Reports"]];var Reports146746663 = [ ["UseLocalConfig","Reports146746663","",""], ["ASN.1","window.top.location='/entrez/viewer.fcgi?list_uids=146746663&db=nuccore&dopt=as n'","",""], ["XML","window.top.location='/entrez/viewer.fcgi?list_uids=146746663&db=nuccore&dopt=xm l'","",""], ["Summary","window.top.location='/entrez/viewer.fcgi?list_uids=146746663&db=nuccore&dopt=do csum'","",""], ["Brief","window.top.location='/entrez/viewer.fcgi?list_uids=146746663&db=nuccore&dopt=br ief'","",""], ["FASTA","window.top.location='/entrez/viewer.fcgi?list_uids=146746663&db=nuccore&dopt=fa sta'","",""], ["TinySeq XML","window.top.location='/entrez/viewer.fcgi?list_uids=146746663&db=nuccore&dopt=fa sta_xml'","",""], ["GenBank","window.top.location='/entrez/viewer.fcgi?list_uids=146746663&db=nuccore&dopt=gb '","",""], ["INSDSeq XML","window.top.location='/entrez/viewer.fcgi?list_uids=146746663&db=nuccore&dopt=gb c_xml'","",""], ["GenBank(Full)","window.top.location='/entrez/viewer.fcgi?list_uids=146746663&db=nuccore&dopt=gb withparts'","",""], ["GI List","window.top.location='/entrez/viewer.fcgi?list_uids=146746663&db=nuccore&dopt=gi '","",""], ["Graphic","window.top.location='?cmd=Show&doptcmdl =graph&db=nuccore&term=EF491876'","",""], ["Revision History","window.top.location='/entrez/sutils/girevhist.cgi?val=EF491876'","",""]]--></SCRIPT>

</TD><TD vAlign=top align=right>
<SCRIPT language=JavaScript1.2><!-- var Menu146746663 = [ ["UseLocalConfig", "jsmenu3Config", "", ""], ["Protein" , "window.top.location='/sites/entrez?Db=protein&DbFrom=nuccore&Cmd=Link&LinkName =nuccore_protein&LinkReadableName=Protein&IdsFromR esult=146746663&ordinalpos=11&itool=EntrezSystem2. PEntrez.Nuccore.Sequence_ResultsPanel.Sequence_RVD ocSum' ", "", ""], ["Taxonomy" , "window.top.location='/sites/entrez?Db=taxonomy&DbFrom=nuccore&Cmd=Link&LinkNam e=nuccore_taxonomy&LinkReadableName=Taxonomy&IdsFr omResult=146746663&ordinalpos=11&itool=EntrezSyste m2.PEntrez.Nuccore.Sequence_ResultsPanel.Sequence_ RVDocSum' ", "", ""], ["Related Sequences" , "window.top.location='/sites/entrez?Db=nuccore&DbFrom=nuccore&Cmd=Link&LinkName =nuccore_nuccore&LinkReadableName=Related%20Sequen ces&IdsFromResult=146746663&ordinalpos=11&itool=En trezSystem2.PEntrez.Nuccore.Sequence_ResultsPanel. Sequence_RVDocSum' ", "", ""] ] --></SCRIPT>Links

</TD></TR><TR><TD style="PADDING-LEFT: 2.8em" vAlign=top align=left colSpan=3>Influenza A virus (A/mallard/ON/499/2005(H5N1)) clone C4 segment 4, complete sequence
gi|146746663|gb|EF491876.1|[146746663]


</TD></TR></TBODY></TABLE></DT></DL>


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</TD><TD vAlign=top align=right>
<SCRIPT language=JavaScript1.2><!-- var Menu146746659 = [ ["UseLocalConfig", "jsmenu3Config", "", ""], ["Full text in PMC" , "window.top.location='/sites/entrez?Db=pmc&DbFrom=nuccore&Cmd=Link&LinkName=nuc core_pmc&LinkReadableName=Full%20text%20in%20PMC&I dsFromResult=146746659&ordinalpos=12&itool=EntrezS ystem2.PEntrez.Nuccore.Sequence_ResultsPanel.Seque nce_RVDocSum' ", "", ""], ["Protein" , "window.top.location='/sites/entrez?Db=protein&DbFrom=nuccore&Cmd=Link&LinkName =nuccore_protein&LinkReadableName=Protein&IdsFromR esult=146746659&ordinalpos=12&itool=EntrezSystem2. PEntrez.Nuccore.Sequence_ResultsPanel.Sequence_RVD ocSum' ", "", ""], ["PubMed" , "window.top.location='/sites/entrez?Db=pubmed&DbFrom=nuccore&Cmd=Link&LinkName= nuccore_pubmed&LinkReadableName=PubMed&IdsFromResu lt=146746659&ordinalpos=12&itool=EntrezSystem2.PEn trez.Nuccore.Sequence_ResultsPanel.Sequence_RVDocS um' ", "", ""], ["Taxonomy" , "window.top.location='/sites/entrez?Db=taxonomy&DbFrom=nuccore&Cmd=Link&LinkNam e=nuccore_taxonomy&LinkReadableName=Taxonomy&IdsFr omResult=146746659&ordinalpos=12&itool=EntrezSyste m2.PEntrez.Nuccore.Sequence_ResultsPanel.Sequence_ RVDocSum' ", "", ""], ["Related Sequences" , "window.top.location='/sites/entrez?Db=nuccore&DbFrom=nuccore&Cmd=Link&LinkName =nuccore_nuccore&LinkReadableName=Related%20Sequen ces&IdsFromResult=146746659&ordinalpos=12&itool=En trezSystem2.PEntrez.Nuccore.Sequence_ResultsPanel. Sequence_RVDocSum' ", "", ""] ] --></SCRIPT>Links

</TD></TR><TR><TD style="PADDING-LEFT: 2.8em" vAlign=top align=left colSpan=3>Influenza A virus (A/mallard/ON/499/2005(H5N1)) clone 2 segment 4, complete sequence
gi|146746659|gb|EF405825.1|[146746659]


</TD></TR></TBODY></TABLE></DT></DL>


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</TD><TD vAlign=top align=right>
<SCRIPT language=JavaScript1.2><!-- var Menu32165587 = [ ["UseLocalConfig", "jsmenu3Config", "", ""], ["Protein" , "window.top.location='/sites/entrez?Db=protein&DbFrom=nuccore&Cmd=Link&LinkName =nuccore_protein&LinkReadableName=Protein&IdsFromR esult=32165587&ordinalpos=13&itool=EntrezSystem2.P Entrez.Nuccore.Sequence_ResultsPanel.Sequence_RVDo cSum' ", "", ""], ["Taxonomy" , "window.top.location='/sites/entrez?Db=taxonomy&DbFrom=nuccore&Cmd=Link&LinkNam e=nuccore_taxonomy&LinkReadableName=Taxonomy&IdsFr omResult=32165587&ordinalpos=13&itool=EntrezSystem 2.PEntrez.Nuccore.Sequence_ResultsPanel.Sequence_R VDocSum' ", "", ""], ["Related Sequences" , "window.top.location='/sites/entrez?Db=nuccore&DbFrom=nuccore&Cmd=Link&LinkName =nuccore_nuccore&LinkReadableName=Related%20Sequen ces&IdsFromResult=32165587&ordinalpos=13&itool=Ent rezSystem2.PEntrez.Nuccore.Sequence_ResultsPanel.S equence_RVDocSum' ", "", ""] ] --></SCRIPT>Links

</TD></TR><TR><TD style="PADDING-LEFT: 2.8em" vAlign=top align=left colSpan=3>Influenza A virus (A/turkey/CA/D0208651-C/02(H5N2)) hemagglutinin (HA) gene, partial cds
gi|32165587|gb|AY296083.1|[32165587]


</TD></TR></TBODY></TABLE></DT></DL>


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Reports<SCRIPT language=JavaScript1.2><!--var PopUpMenu2_LocalConfig_Reports159149085 = [ ["TitleText","Reports"]];var Reports159149085 = [ ["UseLocalConfig","Reports159149085","",""], ["ASN.1","window.top.location='/entrez/viewer.fcgi?list_uids=159149085&db=nuccore&dopt=as n'","",""], ["XML","window.top.location='/entrez/viewer.fcgi?list_uids=159149085&db=nuccore&dopt=xm l'","",""], ["Summary","window.top.location='/entrez/viewer.fcgi?list_uids=159149085&db=nuccore&dopt=do csum'","",""], ["Brief","window.top.location='/entrez/viewer.fcgi?list_uids=159149085&db=nuccore&dopt=br ief'","",""], ["FASTA","window.top.location='/entrez/viewer.fcgi?list_uids=159149085&db=nuccore&dopt=fa sta'","",""], ["TinySeq XML","window.top.location='/entrez/viewer.fcgi?list_uids=159149085&db=nuccore&dopt=fa sta_xml'","",""], ["GenBank","window.top.location='/entrez/viewer.fcgi?list_uids=159149085&db=nuccore&dopt=gb '","",""], ["INSDSeq XML","window.top.location='/entrez/viewer.fcgi?list_uids=159149085&db=nuccore&dopt=gb c_xml'","",""], ["GenBank(Full)","window.top.location='/entrez/viewer.fcgi?list_uids=159149085&db=nuccore&dopt=gb withparts'","",""], ["GI List","window.top.location='/entrez/viewer.fcgi?list_uids=159149085&db=nuccore&dopt=gi '","",""], ["Graphic","window.top.location='?cmd=Show&doptcmdl =graph&db=nuccore&term=AY296078'","",""], ["Revision History","window.top.location='/entrez/sutils/girevhist.cgi?val=AY296078'","",""]]--></SCRIPT>

</TD><TD vAlign=top align=right>
<SCRIPT language=JavaScript1.2><!-- var Menu159149085 = [ ["UseLocalConfig", "jsmenu3Config", "", ""], ["Protein" , "window.top.location='/sites/entrez?Db=protein&DbFrom=nuccore&Cmd=Link&LinkName =nuccore_protein&LinkReadableName=Protein&IdsFromR esult=159149085&ordinalpos=14&itool=EntrezSystem2. PEntrez.Nuccore.Sequence_ResultsPanel.Sequence_RVD ocSum' ", "", ""], ["Taxonomy" , "window.top.location='/sites/entrez?Db=taxonomy&DbFrom=nuccore&Cmd=Link&LinkNam e=nuccore_taxonomy&LinkReadableName=Taxonomy&IdsFr omResult=159149085&ordinalpos=14&itool=EntrezSyste m2.PEntrez.Nuccore.Sequence_ResultsPanel.Sequence_ RVDocSum' ", "", ""], ["Related Sequences" , "window.top.location='/sites/entrez?Db=nuccore&DbFrom=nuccore&Cmd=Link&LinkName =nuccore_nuccore&LinkReadableName=Related%20Sequen ces&IdsFromResult=159149085&ordinalpos=14&itool=En trezSystem2.PEntrez.Nuccore.Sequence_ResultsPanel. Sequence_RVDocSum' ", "", ""] ] --></SCRIPT>Links

</TD></TR><TR><TD style="PADDING-LEFT: 2.8em" vAlign=top align=left colSpan=3>Influenza A virus (A/unknown/NY/118547-11/2001(H5N2)) segment 4 hemagglutinin (HA) gene, complete cds
gi|159149085|gb|AY296078.2|[159149085]


</TD></TR></TBODY></TABLE></DT></DL>


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Reports<SCRIPT language=JavaScript1.2><!--var PopUpMenu2_LocalConfig_Reports157169369 = [ ["TitleText","Reports"]];var Reports157169369 = [ ["UseLocalConfig","Reports157169369","",""], ["ASN.1","window.top.location='/entrez/viewer.fcgi?list_uids=157169369&db=nuccore&dopt=as n'","",""], ["XML","window.top.location='/entrez/viewer.fcgi?list_uids=157169369&db=nuccore&dopt=xm l'","",""], ["Summary","window.top.location='/entrez/viewer.fcgi?list_uids=157169369&db=nuccore&dopt=do csum'","",""], ["Brief","window.top.location='/entrez/viewer.fcgi?list_uids=157169369&db=nuccore&dopt=br ief'","",""], ["FASTA","window.top.location='/entrez/viewer.fcgi?list_uids=157169369&db=nuccore&dopt=fa sta'","",""], ["TinySeq XML","window.top.location='/entrez/viewer.fcgi?list_uids=157169369&db=nuccore&dopt=fa sta_xml'","",""], ["GenBank","window.top.location='/entrez/viewer.fcgi?list_uids=157169369&db=nuccore&dopt=gb '","",""], ["INSDSeq XML","window.top.location='/entrez/viewer.fcgi?list_uids=157169369&db=nuccore&dopt=gb c_xml'","",""], ["GenBank(Full)","window.top.location='/entrez/viewer.fcgi?list_uids=157169369&db=nuccore&dopt=gb withparts'","",""], ["GI List","window.top.location='/entrez/viewer.fcgi?list_uids=157169369&db=nuccore&dopt=gi '","",""], ["Graphic","window.top.location='?cmd=Show&doptcmdl =graph&db=nuccore&term=EF607875'","",""], ["Revision History","window.top.location='/entrez/sutils/girevhist.cgi?val=EF607875'","",""]]--></SCRIPT>

</TD><TD vAlign=top align=right>
<SCRIPT language=JavaScript1.2><!-- var Menu157169369 = [ ["UseLocalConfig", "jsmenu3Config", "", ""], ["Full text in PMC" , "window.top.location='/sites/entrez?Db=pmc&DbFrom=nuccore&Cmd=Link&LinkName=nuc core_pmc&LinkReadableName=Full%20text%20in%20PMC&I dsFromResult=157169369&ordinalpos=15&itool=EntrezS ystem2.PEntrez.Nuccore.Sequence_ResultsPanel.Seque nce_RVDocSum' ", "", ""], ["Protein" , "window.top.location='/sites/entrez?Db=protein&DbFrom=nuccore&Cmd=Link&LinkName =nuccore_protein&LinkReadableName=Protein&IdsFromR esult=157169369&ordinalpos=15&itool=EntrezSystem2. PEntrez.Nuccore.Sequence_ResultsPanel.Sequence_RVD ocSum' ", "", ""], ["PubMed" , "window.top.location='/sites/entrez?Db=pubmed&DbFrom=nuccore&Cmd=Link&LinkName= nuccore_pubmed&LinkReadableName=PubMed&IdsFromResu lt=157169369&ordinalpos=15&itool=EntrezSystem2.PEn trez.Nuccore.Sequence_ResultsPanel.Sequence_RVDocS um' ", "", ""], ["Taxonomy" , "window.top.location='/sites/entrez?Db=taxonomy&DbFrom=nuccore&Cmd=Link&LinkNam e=nuccore_taxonomy&LinkReadableName=Taxonomy&IdsFr omResult=157169369&ordinalpos=15&itool=EntrezSyste m2.PEntrez.Nuccore.Sequence_ResultsPanel.Sequence_ RVDocSum' ", "", ""], ["Related Sequences" , "window.top.location='/sites/entrez?Db=nuccore&DbFrom=nuccore&Cmd=Link&LinkName =nuccore_nuccore&LinkReadableName=Related%20Sequen ces&IdsFromResult=157169369&ordinalpos=15&itool=En trezSystem2.PEntrez.Nuccore.Sequence_ResultsPanel. Sequence_RVDocSum' ", "", ""], ["PopSet" , "window.top.location='/sites/entrez?Db=popset&DbFrom=nuccore&Cmd=Link&LinkName= nuccore_popset&LinkReadableName=PopSet&IdsFromResu lt=157169369&ordinalpos=15&itool=EntrezSystem2.PEn trez.Nuccore.Sequence_ResultsPanel.Sequence_RVDocS um' ", "", ""] ] --></SCRIPT>Links

</TD></TR><TR><TD style="PADDING-LEFT: 2.8em" vAlign=top align=left colSpan=3>Influenza A virus (A/mallard/MN/410/2000(H5N2)) hemagglutinin gene, complete cds
gi|157169369|gb|EF607875.1|[157169369]


</TD></TR></TBODY></TABLE></DT></DL>


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Reports<SCRIPT language=JavaScript1.2><!--var PopUpMenu2_LocalConfig_Reports32165589 = [ ["TitleText","Reports"]];var Reports32165589 = [ ["UseLocalConfig","Reports32165589","",""], ["ASN.1","window.top.location='/entrez/viewer.fcgi?list_uids=32165589&db=nuccore&dopt=asn '","",""], ["XML","window.top.location='/entrez/viewer.fcgi?list_uids=32165589&db=nuccore&dopt=xml '","",""], ["Summary","window.top.location='/entrez/viewer.fcgi?list_uids=32165589&db=nuccore&dopt=doc sum'","",""], ["Brief","window.top.location='/entrez/viewer.fcgi?list_uids=32165589&db=nuccore&dopt=bri ef'","",""], ["FASTA","window.top.location='/entrez/viewer.fcgi?list_uids=32165589&db=nuccore&dopt=fas ta'","",""], ["TinySeq XML","window.top.location='/entrez/viewer.fcgi?list_uids=32165589&db=nuccore&dopt=fas ta_xml'","",""], ["GenBank","window.top.location='/entrez/viewer.fcgi?list_uids=32165589&db=nuccore&dopt=gb' ","",""], ["INSDSeq XML","window.top.location='/entrez/viewer.fcgi?list_uids=32165589&db=nuccore&dopt=gbc _xml'","",""], ["GenBank(Full)","window.top.location='/entrez/viewer.fcgi?list_uids=32165589&db=nuccore&dopt=gbw ithparts'","",""], ["GI List","window.top.location='/entrez/viewer.fcgi?list_uids=32165589&db=nuccore&dopt=gi' ","",""], ["Graphic","window.top.location='?cmd=Show&doptcmdl =graph&db=nuccore&term=AY296084'","",""], ["Revision History","window.top.location='/entrez/sutils/girevhist.cgi?val=AY296084'","",""]]--></SCRIPT>

</TD><TD vAlign=top align=right>
<SCRIPT language=JavaScript1.2><!-- var Menu32165589 = [ ["UseLocalConfig", "jsmenu3Config", "", ""], ["Protein" , "window.top.location='/sites/entrez?Db=protein&DbFrom=nuccore&Cmd=Link&LinkName =nuccore_protein&LinkReadableName=Protein&IdsFromR esult=32165589&ordinalpos=16&itool=EntrezSystem2.P Entrez.Nuccore.Sequence_ResultsPanel.Sequence_RVDo cSum' ", "", ""], ["Taxonomy" , "window.top.location='/sites/entrez?Db=taxonomy&DbFrom=nuccore&Cmd=Link&LinkNam e=nuccore_taxonomy&LinkReadableName=Taxonomy&IdsFr omResult=32165589&ordinalpos=16&itool=EntrezSystem 2.PEntrez.Nuccore.Sequence_ResultsPanel.Sequence_R VDocSum' ", "", ""], ["Related Sequences" , "window.top.location='/sites/entrez?Db=nuccore&DbFrom=nuccore&Cmd=Link&LinkName =nuccore_nuccore&LinkReadableName=Related%20Sequen ces&IdsFromResult=32165589&ordinalpos=16&itool=Ent rezSystem2.PEntrez.Nuccore.Sequence_ResultsPanel.S equence_RVDocSum' ", "", ""] ] --></SCRIPT>Links

</TD></TR><TR><TD style="PADDING-LEFT: 2.8em" vAlign=top align=left colSpan=3>Influenza A virus (A/ruddy turnstone/NJ/2242/00(H5N3)) hemagglutinin (HA) gene, partial cds
gi|32165589|gb|AY296084.1|[32165589]


</TD></TR></TBODY></TABLE></DT></DL>


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Reports<SCRIPT language=JavaScript1.2><!--var PopUpMenu2_LocalConfig_Reports82653141 = [ ["TitleText","Reports"]];var Reports82653141 = [ ["UseLocalConfig","Reports82653141","",""], ["ASN.1","window.top.location='/entrez/viewer.fcgi?list_uids=82653141&db=nuccore&dopt=asn '","",""], ["XML","window.top.location='/entrez/viewer.fcgi?list_uids=82653141&db=nuccore&dopt=xml '","",""], ["Summary","window.top.location='/entrez/viewer.fcgi?list_uids=82653141&db=nuccore&dopt=doc sum'","",""], ["Brief","window.top.location='/entrez/viewer.fcgi?list_uids=82653141&db=nuccore&dopt=bri ef'","",""], ["FASTA","window.top.location='/entrez/viewer.fcgi?list_uids=82653141&db=nuccore&dopt=fas ta'","",""], ["TinySeq XML","window.top.location='/entrez/viewer.fcgi?list_uids=82653141&db=nuccore&dopt=fas ta_xml'","",""], ["GenBank","window.top.location='/entrez/viewer.fcgi?list_uids=82653141&db=nuccore&dopt=gb' ","",""], ["INSDSeq XML","window.top.location='/entrez/viewer.fcgi?list_uids=82653141&db=nuccore&dopt=gbc _xml'","",""], ["GenBank(Full)","window.top.location='/entrez/viewer.fcgi?list_uids=82653141&db=nuccore&dopt=gbw ithparts'","",""], ["GI List","window.top.location='/entrez/viewer.fcgi?list_uids=82653141&db=nuccore&dopt=gi' ","",""], ["Graphic","window.top.location='?cmd=Show&doptcmdl =graph&db=nuccore&term=CY005969'","",""], ["Revision History","window.top.location='/entrez/sutils/girevhist.cgi?val=CY005969'","",""]]--></SCRIPT>

</TD><TD vAlign=top align=right>
<SCRIPT language=JavaScript1.2><!-- var Menu82653141 = [ ["UseLocalConfig", "jsmenu3Config", "", ""], ["Protein" , "window.top.location='/sites/entrez?Db=protein&DbFrom=nuccore&Cmd=Link&LinkName =nuccore_protein&LinkReadableName=Protein&IdsFromR esult=82653141&ordinalpos=17&itool=EntrezSystem2.P Entrez.Nuccore.Sequence_ResultsPanel.Sequence_RVDo cSum' ", "", ""], ["PubMed" , "window.top.location='/sites/entrez?Db=pubmed&DbFrom=nuccore&Cmd=Link&LinkName= nuccore_pubmed&LinkReadableName=PubMed&IdsFromResu lt=82653141&ordinalpos=17&itool=EntrezSystem2.PEnt rez.Nuccore.Sequence_ResultsPanel.Sequence_RVDocSu m' ", "", ""], ["Taxonomy" , "window.top.location='/sites/entrez?Db=taxonomy&DbFrom=nuccore&Cmd=Link&LinkNam e=nuccore_taxonomy&LinkReadableName=Taxonomy&IdsFr omResult=82653141&ordinalpos=17&itool=EntrezSystem 2.PEntrez.Nuccore.Sequence_ResultsPanel.Sequence_R VDocSum' ", "", ""], ["Related Sequences" , "window.top.location='/sites/entrez?Db=nuccore&DbFrom=nuccore&Cmd=Link&LinkName =nuccore_nuccore&LinkReadableName=Related%20Sequen ces&IdsFromResult=82653141&ordinalpos=17&itool=Ent rezSystem2.PEntrez.Nuccore.Sequence_ResultsPanel.S equence_RVDocSum' ", "", ""] ] --></SCRIPT>Links

</TD></TR><TR><TD style="PADDING-LEFT: 2.8em" vAlign=top align=left colSpan=3>Influenza A virus (A/shorebird/DE/75/2004(H5N7)) segment 4, complete sequence
gi|82653141|gb|CY005969.1|[82653141]


</TD></TR></TBODY></TABLE></DT></DL>


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</TD><TD vAlign=top align=right>
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</TD></TR><TR><TD style="PADDING-LEFT: 2.8em" vAlign=top align=left colSpan=3>Influenza A virus (A/shorebird/DE/101/2004(H5N7)) segment 4, complete sequence
gi|82623838|gb|CY005927.1|[82623838]


</TD></TR></TBODY></TABLE></DT></DL>


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</TD><TD vAlign=top align=right>
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</TD></TR><TR><TD style="PADDING-LEFT: 2.8em" vAlign=top align=left colSpan=3>Influenza A virus (A/mallard/MN/105/2000(H5N5)) hemagglutinin gene, complete cds
gi|157169393|gb|EF607888.1|[157169393]


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</TD><TD vAlign=top align=right>
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</TD></TR><TR><TD style="PADDING-LEFT: 2.8em" vAlign=top align=left colSpan=3>Influenza A virus (A/duck/ME/151895-7A/02(H5N2)) hemagglutinin (HA) gene, partial cds
gi|32165579|gb|AY296079.1|[32165579]

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[Sally Furniss]

Re: Idaho bird farm quarantined after low-pathogenic bird virus found

<code>A southwestern Idaho bird farm has been quarantined after two birds there were found to have a bird flu virus, but Idaho Department of Agriculture officials say it is not the same virus that has spread through birds in Asia, Europe and Africa.

About 300 birds were shipped from the farm to a bird dog sporting event at Prado Regional Park in Chino, Calif., just before the virus was detected, and all of those birds were quarantined and euthanized, said Larry Hawkins, a spokesman with the U.S. Department of Agriculture in Sacramento, Calif.

The trucks used to transport the birds were disinfected and the suits and other materials used to collect them were incinerated,

Hawkins said. It does not appear as if the virus spread to any animals beyond the two at the farm in the Treasure Valley region of Idaho, said Bill Barton, the state veterinarian with the Idaho Department of Agriculture.

The virus is not uncommon among wild birds, Barton said, and poses little or no risk to human health.

In domesticated birds, it can cause coughing and respiratory illness, according to the Centers for Disease Control, but rarely causes more serious illness and often goes undetected.

The Idaho farm has thousands of pheasants, chukars, ducks and quail, Barton said, but all of the birds are used for sporting events, not human consumption.

Finding the virus does cause concern, Barton said, because there is a small risk it could mutate to a more virulent strain.

Identifying and classifying the types of bird flu viruses is complicated and requires sophisticated molecular testing. "It would be nice if it were simpler," said Walter Boyce, a University of California, Davis professor of veterinary medicine and the co-director of the school's Center for Rapid Influenza Surveillance and Research.

Boyce is an expert in bird flu but is not involved in the investigation or testing of the Idaho game birds.

There are essentially two types of bird flu viruses, Boyce said: H-types and N-types. Viruses classified as an N-type are generally not of concern.

But the H-type viruses are more closely monitored, because at least two versions of that type—H5 and H7—are known to be able to mutate into new viruses.

The deadly, highly pathogenic bird flu virus found in Asia and parts of Europe is H5N1, Boyce said, and is considered a high-pathogen virus, meaning it is more contagious and more easily spread.

The virus found at the Idaho farm was classified as H5N8, said Barton, and is a low-pathogen virus, considered much less dangerous.

It's fairly rare for a low-pathogen virus to mutate into the more dangerous high-pathogen type, said Boyce, but it can happen, especially in situations where large numbers of birds are kept together in close quarters.

It's not yet known when the Idaho birds became infected, Barton said.

The birds were kept in an outside pen area that was covered with plastic mesh, he said, and they could have been exposed to the virus through droppings from a wild bird flying or roosting overhead.

Other than the California shipment, it was not immediately clear where other birds in the flock had been shipped in recent weeks, Barton said.

The farm's owner, whom Barton declined to identify, was cooperating completely with the investigation. "They've been so helpful, and they've done everything right," Barton said. "They're excellent producers and proactive, and these things can still happen sometimes."

Barton said he didn't know yet how long the farm will be quarantined, or if the rest of the flock will be euthanized.

That will depend on the investigation, which could take some time.

Department officials are examining all bird farms in a roughly two-mile radius of the affected farm, he said, and the farm where the birds were found is being disinfected.

The virus was found in the two infected birds incidentally as testing was being done to check for a common bacteria, Barton said.

http://hisz.rsoe.hu

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