Re: Where H1N1 began La Gloria considered Town Zero in outbreak of H1N1 strain
they just tested 2 strains:
A/Swine/Spain/53207/2004(SP04),
A/Swine/Kansas/77778/2007(KS07)
I'd try Tx/4199-2 and England/1993,
you's need another reassortment then to pick H1-HA
or start from the Wisconsin man, WI/10/1998
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they just tested 2 strains:
A/Swine/Spain/53207/2004(SP04),
A/Swine/Kansas/77778/2007(KS07)
I'd try Tx/4199-2 and England/1993,
you's need another reassortment then to pick H1-HA
or start from the Wisconsin man, WI/10/1998
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Code:
>A/******/index/2009/02/01 ------------segment 1------------------------ 293 67 2279 775 >CY095672,A/swine/Texas/4199-2/1998,1998//,USA,H3N2,Swine,1 -------------segment 2----------------------------- 338 77 2274 803 >CY095673,A/swine/Texas/4199-2/1998,1998//,USA,H3N2,Swine,2 -------------segment 3---------------------------- 344 74 2151 782 >CY095674,A/swine/Texas/4199-2/1998,1998//,USA,H3N2,Swine,3 ------------segment 4--------------------- 447 76 1700 76 >AF455680,A/Swine/Indiana/P12439/00 ,2000//,USA,H1N2,Swine,4 452 77 1700 519 >GQ229365,A/swine/Hong Kong/NS623/2002,2002/07/09,Hong Kong,H1N2,Swine,4 458 78 1700 47 >AF250124,A/Swine/Indiana/9K035/99 ,1999//,USA,H1N2,Swine,4 464 79 1700 799 >CY085622,A/swine/Hong Kong/NS30/2004,2004/01/06,Hong Kong,H1N2,Swine,4 --------------segment 5-------------------------- 293 44 1497 850 >CY095676,A/swine/Texas/4199-2/1998,1998//,USA,H3N2,Swine,5 -------------segment 6------------------- 588 83 1410 969 >CY116038,A/swine/England/195852/1992,1992/01/07,United Kingdom,H1N1,Swine,6 --------------segment 7--------------------------- 163 4 245 552 >FJ975097,A/swine/Italy/306907/2003,2003/12/,Italy,H1N1,Swine,7 228 22 964 127 >AY363573,A/swine/Hong Kong/5190/99,1999//,Hong Kong,H3N2,Swine,7 336 33 982 1092 >CY116138,A/swine/England/375017/1993,1993/10/24,United Kingdom,H3N2,Swine,7 -------------segment 8----------------------------- 346 29 838 864 >CY095679,A/swine/Texas/4199-2/1998,1998//,USA,H3N2,Swine,8 1 >A/******/index/2009/02/01 5: 28, 31, 33,---, 29,---,115, 34 A/Sw/Index/triple-reassortant/1998(H3N2) 4: 33, 30, 43, 52, 36,201,119, 45 A/Wisconsin/10/98,1998//,H1N1 6: 29, 33, 34,---, 29,---,119, 34 A/swine/Texas/4199-2/1998,1998//,USA,H3N2,Swine 2: 36, 39, 43, 91, 34,200,125, 46 A/swine/North Carolina/47834/2000,2000//,USA,H1N1,Swine 3: 45, 47, 45, 91, 44,200,124, 51 A/Iowa/CEID23/2005,2005//,H1N1 7: 43, 48, 52,---, 44,---,120, 44 A/swine/Ontario/33853/2005(H3N2) 523 54 1032 287 >AF342821,A/Wisconsin/10/1998,1998//,USA,H1N1,Human,4 611 104 1701 2949 >FJ986620,A/Ohio/01/2007,2007/08/17,USA,H1N1,Human,4 611 104 1701 2950 >FJ986621,A/Ohio/02/2007,2007/08/17,USA,H1N1,Human,4 613 103 1679 2948 >FJ986619,A/Wisconsin/87/2005,2005/12/08,USA,H1N1,Human,4 793 135 1701 28 >L24362,A/Maryland/12/1991,1991//,USA,H1N1,Human,4 793 135 1701 81 >U53162,A/Wisconsin/4754/1994,1994//,USA,H1N1,Human,4 793 135 1701 82 >U53163,A/Wisconsin/4755/1994,1994//,USA,H1N1,Human,4 793 135 1701 3066 >CY039909,A/Maryland/12/1991,1991//,USA,H1N1,Human,4 799 136 1701 1229 >CY024925,A/Ohio/3559/1988,1988//,USA,H1N1,Human,4 898 152 1692 2947 >FJ986618,A/Iowa/01/2006,2006/11/08,USA,H1N1,Human,4 911 155 1701 747 >DQ889689,A/Iowa/CEID23/2005,2005//,USA,H1N1,Human,4 934 159 1701 3616 >JF758482,A/South Dakota/03/2008,2008/12/04,USA,H1N1,Human,4 file mx.n5
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