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to demonstrate and compare the evolution of influenza during
one season I chose NZ 2005, because they upload the
most H3N2 genomes to genbank with dates.
Polymorphisms which occur only once in the table are not listed - as usual.
You can distinguish 5-7 groups, the first one is listed extra below in a 2nd table.
The 2nd group was a precursor which circulated in March , which is fall in NZ.
This group had some of the polymorphisms of the first group, but not all.
Canterbury/270 and Wellington/4 look like the ancestors of the 2005 H3N2 in NZ
and have survived almost unchanged
one season I chose NZ 2005, because they upload the
most H3N2 genomes to genbank with dates.
Polymorphisms which occur only once in the table are not listed - as usual.
You can distinguish 5-7 groups, the first one is listed extra below in a 2nd table.
The 2nd group was a precursor which circulated in March , which is fall in NZ.
This group had some of the polymorphisms of the first group, but not all.
Canterbury/270 and Wellington/4 look like the ancestors of the 2005 H3N2 in NZ
and have survived almost unchanged
Code:
000000000000000000000001111111111111111111111111222222222 00000000000000000000000000000000000111111111111111111111111111111111111122222222222 000000000000000000000000000000000000000000011111111111111111111111111111111111122222 0000000000000000000000000000000000111111111111111111111111111 000000000000000000000000000000000001111111111111111111111 00000000000000000000000000001111111111111 000000000000000000000000000000000000 00000000000000000000000
003334445556777888888990011222333455556668889999000111112 00011122233334444455666677778888999001111112223334444566667777777888889900011122222 000011111222233333444555666777778888889999901111111222333334444555556788889999900001 0000333334455666666666777777788999000111223333333445555566777 111222333334444455556666778899999990000111122223333444555 01122233344444555666666889990011112223333 000111123333444444455556666666666779 00000111122333344466788
570334564797569246789094938069699013561450352799067133577 46723744856691278928569924452449007680014893673450479357891134468247790628905811123 468834899122417778255123358127892357890014971111579179002331569133480415670018913662 3556267891937223344567001123428248046488091133568091235703012 189689011281589904890269385701346780299001613790577048123 82778958902368348025788031260701372561568 089179971489124556834792444556678490 23679245847345633416811
150597980662080501984064278066726550134139931758849209284 09238469500607650938830904735691062531793410385492631964326973598124502552731067862 291724668058340584336687418768655586676985540239822536581280618839548663425649207124 5148489969609347904654390685056319161457320417517397380474684 656568703528413721927814979090735956736357090046729256970 68527433218562037292809331323062256753218 524580176954518149141455356255895233 32890662137573212170039
-codon-position---------------------------------------------------------------------------------------------------------------------------------------- 2 2 1 2 11 21 1 1 1 2 1 11 1 2 1 22 2 22 1 1 21 1 1 1 1 1 2 2 21 1 1 1 1 121 1 1 2 2 212 212 2 1 1222211222 2 12222221 2 22 22221222222222222 221111111111111211111111111 111211111121121 1111121211 22122 22222 122 2221 22222221222122 22222 2111112111111111111 11111 111221111 2221 221 122222 2
---Index-----------------------------------------------------------------------------------------------------------------------------------------------GGTGGACTGAGATGCCTGAGGGGAGCACCGTAGTGAAGGTGTGCCTGCCACGAACGA TCCGGGGACTAGCAGCACAAGTGAACGATGGATTGACGACTAGGAGCCCGTAATCCTATGGAAGACCGGCCACAGGCGTTAAC CAGACATATTGAAAAAAAATCGAATGCAGAATTCCGAAAATAACAAGTCTGGATTATCGTCCCAATAAAAAAGCTTGAGTCCGA GCGAGGCGAGGCGATTAGAAACTATGGGCCGCATTTCTGCCGTACGGCCGGTCAATCTTGA GCGCGCTGCGGGCGTCTGCGAGGAAGACAACCACTGATGCGAATGTACAGGAAACAG CTGGGGGGTGACATCAGGCTAAGCTCCTACAGCTGGCGGCA TGAGGCCGGCTCAGCGAACAAAAAGAAGGAGTCAGG TGCTGCGACCGCGACCCACCAGG
1 >gi|87042645|gb|CY008643| /Human/1(PB2)/H3N2/New Zealand/2005/08/16/ Influenza A virus (A/Canterbury/258/2005(H3N2)) segment 1, complete sequenc .AA...................A...G.......A...A.................. C.A.A.A.TCG....T...G.C..........A..G..GAC..AG.....C.TG.TCG...G...T...T.G.G......... T..GTGCGGC...G..GGG...GGA....C.GG..A....C..TG...A...G.C.C..C.T.....GT.G........C.T.G ........G.A.AGG.TTG......A.A.A......A.AT..........A....C..... .T.TTT..A.A.A...C.TAG.A....T.GT.G....GA.TGG...G....G.T.G. .C.A.A......G.......G.....A.............. .....TTA....G....G.GGG.G..G..GA.T.A. C...................... 153 130 , 152 130 1:>gi|87042645|gb|CY008643| /Human/1(PB2)/H3N2/New Zealand/2005/08/16/ Influenza A virus (A/Canterbury/258/2005(H3N2)) segment 1, complete sequenc
2 >gi|85833284|gb|CY008347| /Human/1(PB2)/H3N2/New Zealand/2005/05/24/ Influenza A virus (A/Canterbury/20/2005(H3N2)) segment 1, complete sequenc .AA...T....G..........A...G.T.....A...A.................. C.A.A.A.TCG....T...G.C..........A..G..GTC..AG.....C.TG.TCG...GG.GT...T.G.G......... ...GTG.GGC...G.GGGG...GGA....C.GGT.A....C..TG...A...G.C.C..C.T.....GT.G......T.C.T.G ..A.....G.A.AGG.TTG....G.TAA.A........AT..........A....C..... .T.TTTC.G.A.A...CATAG.A....T.GT.G....GA.TGG...G....G.T.G. .C.A.A..............G.....A...GA......... .....TTA...TGA...G.GGG.G..G..GA.T.A. C.........A.........G.. 147 145 , 146 145 2:>gi|85833284|gb|CY008347| /Human/1(PB2)/H3N2/New Zealand/2005/05/24/ Influenza A virus (A/Canterbury/20/2005(H3N2)) segment 1, complete sequenc
3 >gi|89112239|gb|CY009035| /Human/1(PB2)/H3N2/New Zealand/2005/05/25/ Influenza A virus (A/Canterbury/26/2005(H3N2)) segment 1, complete sequenc .AA...T....G..........A...G.T.....A...A.................. C.A.A.A.TCG....T...G.C..........A..G..GTC..AG.....C.TG.TCG...GG.GT...T.G.G......... ...GTG.GGC...G.GGGG...GGA....C.GGT.A....C..TG...A...G.C.C..C.T.....GT.G......T.C.T.G ..A.....G.A.AGG.TTG....G.TAA.A........AT..........A....C..... .T.TTTC.G.A.A...C.TAG.A....T.GT.G....GA.TGG...G....G.T.G. .C.A.A..............G.....A...GA......... .....TTA...TGA.A.G.GGG.G..G..GA.T.A. C.........A.........G.. 145 145 , 145 145 3:>gi|89112239|gb|CY009035| /Human/1(PB2)/H3N2/New Zealand/2005/05/25/ Influenza A virus (A/Canterbury/26/2005(H3N2)) segment 1, complete sequenc
4 >gi|89113346|gb|CY009043| /Human/1(PB2)/H3N2/New Zealand/2005/06/07/ Influenza A virus (A/Canterbury/34/2005(H3N2)) segment 1, complete sequenc .AA...T....G..........A...G.T.....A...A.................. C.A.A.A.TCG....T...G.C..........A..G..GTC..AG.....C.TG.TCG...GG.GT...T.G.G......... ...GTG.GGC...G.GGGG...GGA....C.GGT.A....C..TG...A...G.C.C..C.T.....GT.G......T.C.T.G ..A.....G.A.AGG.TTG....G.TAA.A........AT..........A....C..... .T.TTTC.G.A.A...C.TAG.A....T.GT.G....GA.TGG...G....G.T.G. .C.A.A..............G.....A...GA......... .....TTA...TGA.A.G.GGG.G..G..GA.T.A. C.........A.........G.. 147 145 , 146 145 4:>gi|89113346|gb|CY009043| /Human/1(PB2)/H3N2/New Zealand/2005/06/07/ Influenza A virus (A/Canterbury/34/2005(H3N2)) segment 1, complete sequenc
5 >gi|85833227|gb|CY008387| /Human/1(PB2)/H3N2/New Zealand/2005/07/16/ Influenza A virus (A/Canterbury/220/2005(H3N2)) segment 1, complete sequenc .AA.......A.........A.A...G.......A.....A..T............. C.A.A.A.TCG....T...G.C....A.....A.AG..GTC..AG.....C.TG.TCG...G...T...T.G.G..T...... ...GTGCGGC...G.GGGG...GGA....CGGG..A....C..TG...A...G.C.C..C.T.....GT.GG.......C.T.G ........G.A.AGG.TTG......AAA.A.T......AT.....A.T.AA....C..... .T.TTT.AG.A.A...C.TAG.A...TTGGT.G....GA.TGG...G....G.T.G. .C.A.A.........G..T.G.....A.............. .....TTA.T..G....G.GGG.G..G..GA.T.A. C...................... 148 147 , 147 147 5:>gi|85833227|gb|CY008387| /Human/1(PB2)/H3N2/New Zealand/2005/07/16/ Influenza A virus (A/Canterbury/220/2005(H3N2)) segment 1, complete sequenc
6 >gi|85833170|gb|CY008419| /Human/1(PB2)/H3N2/New Zealand/2005/07/31/ Influenza A virus (A/Canterbury/237/2005(H3N2)) segment 1, complete sequenc .AA.......A.........A.A...G.......A.....A..T............. C.A.A.A.TCG....T...G.C....A.....A.AG..GTC..AG.....C.TG.TCG...G...T...T.G.G..T...... ...GTGCGGC...G.GGGG...GGA....CGGG..A....C..TG...A...G.C.C..C.T.....GT.GG.......C.T.G ........G.A.AGG.TTG......AAA.A.T......AT.....A.T.AA....C..... .T.TTT.AG.A.A...C.TAG.A...TTGGT.G....GA.TGG...G....G.T.G. .C.A.A.........G..T.G.....A.............. .....TTA.T..G....G.GGG.G..G..GA.T.A. C...................... 148 147 , 147 147 6:>gi|85833170|gb|CY008419| /Human/1(PB2)/H3N2/New Zealand/2005/07/31/ Influenza A virus (A/Canterbury/237/2005(H3N2)) segment 1, complete sequenc
7 >gi|87043132|gb|CY008571| /Human/1(PB2)/H3N2/New Zealand/2005/07/22/ Influenza A virus (A/Canterbury/205/2005(H3N2)) segment 1, complete sequenc .AA.......A.........A.A...G.......A.....A..T............. C.A.A.A.TCG....T...G.C....A.....A.AG..GTC..AG.....C.TG.TCG...G...T...T.G.G..T...... ...GTGCGGC...G.GGGG...GGA....CGGG..A....C..TG...A...G.C.C..C.T.....GT.GG.......C.T.G ........G.A.AGG.TTG......AAA.A.T......AT.....A.T.AA....C..... .T.TTT.AG.A.A...C.TAG.A...TTGGT.G....GA.TGG...G....G.T.G. .C.A.A.........G..T.G.....A.............. -....TTA.T..G....G.GGG.G..G..GA.T.A. C...................... 155 148 , 147 147 7:>gi|87043132|gb|CY008571| /Human/1(PB2)/H3N2/New Zealand/2005/07/22/ Influenza A virus (A/Canterbury/205/2005(H3N2)) segment 1, complete sequenc
8 >gi|84873324|gb|CY008090| /Human/1(PB2)/H3N2/New Zealand/2005/07/08/ Influenza A virus (A/Canterbury/166/2005(H3N2)) segment 1, complete sequenc .AA.......A.........A.A...G.......A.....A..T............. C.A.A.A.TCG....T...G.C....A.....A.AG..GTC..AG.....C.TG.TCG...G...T...T.G.G..T...... ...GTGCGGC...G.GGGG...GGA....CGGG..A....C..TG...A...G.C.C..C.T.....GT.GG.......C.T.G ........G.A.AGG.TTG......AAA.A.T......AT.....A.T.AA....C..... .T.TTT.AG.A.A...C.TAG.A...TTGGT.G....GA.TGG...G....G.T.G. .C.A.A.........G..T.G.....A.............. .....TTA.T..G....G.GGG.G..G..GA.T.A. C...................... 147 147 , 147 147 8:>gi|84873324|gb|CY008090| /Human/1(PB2)/H3N2/New Zealand/2005/07/08/ Influenza A virus (A/Canterbury/166/2005(H3N2)) segment 1, complete sequenc
9 >gi|84873366|gb|CY008098| /Human/1(PB2)/H3N2/New Zealand/2005/07/13/ Influenza A virus (A/Canterbury/206/2005(H3N2)) segment 1, complete sequenc .AA.......A.........A.A...G.......A.....A..T............. C.A.A.A.TCG....T...G.C....A.....A.AG..GTC..AG.....C.TG.TCG...G...T...T.G.G..T...... ...GTGCGGC...G.GGGG...GGA....CGGG..A....C..TG...A...G.C.C..C.T.....GT.GG.......C.T.G ........G.A.AGG.TTG......AAA.A.T......AT.....A.T.AA....C..... .T.TTT.AG.A.A...C.TAG.A...TTGGT.G....GA.TGG...G....G.T.G. .C.A.A.........G..T.G.....A.............. .....TTA.T..G....G.GGG.G..G..GA.T.A. C...................... 147 147 , 147 147 9:>gi|84873366|gb|CY008098| /Human/1(PB2)/H3N2/New Zealand/2005/07/13/ Influenza A virus (A/Canterbury/206/2005(H3N2)) segment 1, complete sequenc
10 >gi|85833208|gb|CY008395| /Human/1(PB2)/H3N2/New Zealand/2005/07/27/ Influenza A virus (A/Canterbury/234/2005(H3N2)) segment 1, complete sequenc .AA...........T.......A.T.G.......A..A..A.........T...... C.A.A.A.TCG....T...G.C....A.....A..G..GTC..AG.....C.TG.TCG...G...T...T.G.G......... ...GTGCGGC...G.GGGG.T.GGA....C.GG..A..G.C..TG...A...G.C.CT.C.T.....GT.G.T......C.T.G ........G.A.AGG.TTG......AAA.A........AT..........A....C..... .T.TTT..G.A.A...C.TAG.A....T.GTTG....GA.TGG...G....G.T.G. .C.A.AA............CG.....A..........A... .....TTA....G....G.GGG.G..G..GA.T.A. C...................... 146 142 , 142 142 10:>gi|85833208|gb|CY008395| /Human/1(PB2)/H3N2/New Zealand/2005/07/27/ Influenza A virus (A/Canterbury/234/2005(H3N2)) segment 1, complete sequenc
11 >gi|87042984|gb|CY008587| /Human/1(PB2)/H3N2/New Zealand/2005/07/24/ Influenza A virus (A/Canterbury/233/2005(H3N2)) segment 1, complete sequenc .AA...........T.......A.T.G.......A..A..A.........T...... C.A.A.A.TCG....T...G.C....A.....A..G..GTC..AG.....C.TG.TCG...G...T...T.G.G......... ...GTGCGGC...G.GGGG.T.GGA....C.GG..A..G.C..TG...A...G.C.CT.C.T.....GT.G.T......C.T.G ........G.A.AGG.TTG......AAA.A........AT..........A....C..... .T.TTT..G.A.A...C.TAG.A....T.GTTG....GA.TGG...G....G.T.G. .C.A.AA............CG.....A..........A... .....TTA....G....G.GGG.G..G..GA.T.A. C...................... 143 142 , 142 142 11:>gi|87042984|gb|CY008587| /Human/1(PB2)/H3N2/New Zealand/2005/07/24/ Influenza A virus (A/Canterbury/233/2005(H3N2)) segment 1, complete sequenc
12 >gi|85829305|gb|CY008427| /Human/1(PB2)/H3N2/New Zealand/2005/08/01/ Influenza A virus (A/Canterbury/238/2005(H3N2)) segment 1, complete sequenc .AA...........T.......A.T.G.......A..A..A.........T...... C.A.A.A.TCG....T...G.C....A.....A..G..GTC..AG.....C.TG.TCG...G...T...T.G.G......... ...GTGCGGC...G.GGGG.T.GGA....C.GG..A..G.C..TG...A...G.C.CT.C.T.....GT.G........C.T.G ........G.A.AGG.TTG......AAA.A........AT..........A....C..... .T.TTT..G.A.A...C.TAG.A....T.GTTG....GA.TGG...G....G.T.G. .C.A.AA............CG.....A..........A... .....TTA....G....G.GGG.G..G..GA.T.A. C...................... 142 141 , 141 141 12:>gi|85829305|gb|CY008427| /Human/1(PB2)/H3N2/New Zealand/2005/08/01/ Influenza A virus (A/Canterbury/238/2005(H3N2)) segment 1, complete sequenc
13 >gi|85818137|gb|CY008411| /Human/1(PB2)/H3N2/New Zealand/2005/07/31/ Influenza A virus (A/Canterbury/236/2005(H3N2)) segment 1, complete sequenc .AA...........T.......A.T.G.......A..A..A.........T...... C.A.A.A.TCG....T...G.C....A.....A..G..GTC..AG....AC.TG.TCG...G...T...T.G.G......... .G.GTGCGGC...G.GGGG.T.GGA....C.GG..A..G.C..TG...AC..G.C.CT.C.T.....GT.G........C.T.G ........G.A.AGG.TTG......AA..A........AT..........A....C..... .T.TTT..G.A.A...C.TAG.A....T.GTTG....GA.TGG...G....G.T.G. .C.A.AA............CG.....A..........A... .....TTA....G....G.GGG.G..G..GA.T.A. C...................... 145 143 , 145 143 13:>gi|85818137|gb|CY008411| /Human/1(PB2)/H3N2/New Zealand/2005/07/31/ Influenza A virus (A/Canterbury/236/2005(H3N2)) segment 1, complete sequenc
14 >gi|85833151|gb|CY008435| /Human/1(PB2)/H3N2/New Zealand/2005/08/01/ Influenza A virus (A/Canterbury/242/2005(H3N2)) segment 1, complete sequenc .AA...........T.......A.T.G.......A..A..A.........T...... C.A.A.A.TCG....T...G.C....A.....A..G..GTC..AG.....C.TG.TCG...G...T...T.G.G......... ...GTGCGGC...G.GGGG.T.GGA....C.GG..A..G.C..TG...AC..G.C.CT.C.T.....GT.G........C.T.G ........G.A.AGG.TTG......AAA.A........AT..........A....C..... .T.TTT..G.A.A...C.TAG.A....T.GTTG....GA.TGG...G....G.T.G. .C.A.AA............CG.....A..........A... .....TTA....G....G.GGG.G..G..GA.T.A. C...................... 144 142 , 143 142 14:>gi|85833151|gb|CY008435| /Human/1(PB2)/H3N2/New Zealand/2005/08/01/ Influenza A virus (A/Canterbury/242/2005(H3N2)) segment 1, complete sequenc
15 >gi|84873552|gb|CY008114| /Human/1(PB2)/H3N2/New Zealand/2005/08/01/ Influenza A virus (A/Canterbury/259/2005(H3N2)) segment 1, complete sequenc .AA...........T.......A.T.G.......A..A..A.........T...... C.A.A.A.TCG....T...G.C....A.....A..G..GTC..AG.....C.TG.TCG...G...T...T.G.G......... ...GTGCGGC...G.GGGG.T.GGA....C.GG..A..G.C..TG...AC..G.C.CT.C.T.....GT.G........C.T.G ........G.A.AGG.TTG......AAA.A........AT..........A....C..... .T.TTT..G.A.A...C.TAG.A....T.GTTG....GA.TGG...G....G.T.G. .C.A.AA............CG.....A..........A... .....TTA....G....G.GGG.G..G..GA.T.A. C...................... 143 142 , 143 142 15:>gi|84873552|gb|CY008114| /Human/1(PB2)/H3N2/New Zealand/2005/08/01/ Influenza A virus (A/Canterbury/259/2005(H3N2)) segment 1, complete sequenc
16 >gi|113170974|gb|CY014046| /Human/1(PB2)/H3N2/New Zealand/2005/07/01/ Influenza A virus (A/Otago/1/2005(H3N2)) segment 1, complete sequenc .AA...................A...G.......A.....A................ C.A.A.A.TCG....T...G.C....A.....A..G..GTC..AG.....C.TG.TCG...G...T...T.G.G......... ...GTGCGGC...G.GGGG..AGGA....C.GG..A....C..TG...A...G.C.C..C.T.....GT.G........C.T.G ........G.A.AGG.TTG......AAA.A.......CAT...............C..... .T.TTT..G.A.A...C.TAG.A....T.GT.G....GA.TGG...G....G.T.G- .C.A.A..............G.....A.............. -....TTA....G....G.GGG.G..G..GA.T.A. C...................... 154 133 , 144 131 16:>gi|113170974|gb|CY014046| /Human/1(PB2)/H3N2/New Zealand/2005/07/01/ Influenza A virus (A/Otago/1/2005(H3N2)) segment 1, complete sequenc
17 >gi|84873220|gb|CY008050| /Human/1(PB2)/H3N2/New Zealand/2005/05/04/ Influenza A virus (A/Canterbury/24/2005(H3N2)) segment 1, complete sequenc .AA...................A...G.......A.....A................ C.A.A.A.TCG....T...G.C....A.....A..G..GTC..AG.....C.TG.TCG...G...T.....G.G......... ...GTGCGGC...G.GGGG...GGA....C.GG..A....C..TG...A...G.C.C..C.T.....GT.G........C.T.G ........G.A.AGG.TTG......AAA.A........AT..........A....C..... .T.TTT..G.A.A...C.TAG.A....T.GT.G....GA.TGG...G....G.T.G. .C.A.A......G.......G.....A.............. .....TTA....G....G.GGG.G..G..GA.T.A. C...................... 137 130 , 137 130 17:>gi|84873220|gb|CY008050| /Human/1(PB2)/H3N2/New Zealand/2005/05/04/ Influenza A virus (A/Canterbury/24/2005(H3N2)) segment 1, complete sequenc
18 >gi|84873239|gb|CY008058| /Human/1(PB2)/H3N2/New Zealand/2005/05/27/ Influenza A virus (A/Canterbury/29/2005(H3N2)) segment 1, complete sequenc .AA..........A........A...G.......A...................... C.A.A.A.TCG....T...G.C..........A..G..GTC..AG..T..C.TG.TCG...G...T...T.G.G......... ...GTGCGGC...G.GGGG...GGAA...C.GG..A....C..TG...A...G.CGC.AC.T.....GT.G....C.....T.G ........G.A.AGG.TTG......AAA.A........AT....T.....A....C..... .TATTT..G.A.A...C.TAG.A....T.GT.G....GA.TGG...GA.A.G.T.G. .C.A.A..............G.....A.............. C....TTA....G....G.GGG.G..G..GA.T.A. C...................... 139 138 , 139 138 18:>gi|84873239|gb|CY008058| /Human/1(PB2)/H3N2/New Zealand/2005/05/27/ Influenza A virus (A/Canterbury/29/2005(H3N2)) segment 1, complete sequenc
19 >gi|84874123|gb|CY007970| /Human/1(PB2)/H3N2/New Zealand/2005/06/01/ Influenza A virus (A/Canterbury/33/2005(H3N2)) segment 1, complete sequenc .AA.A........A........A...G.......A...................... C.A.A.A.TCG....T...G.C..........A..G..GTC..AG..T..C.TG.TCG...G...T...T.G.G......... ...GTGCGGC...G.GGGG...GGAA...C.GG..A....C..TG...A...G.CGC.AC.T.....GT.G....C.....T.G ........G.A.AGG.TTG......AAA.A........AT....T.....A....C..... .TATTT..G.A.A...C.TAG.A....T.GT.G....GA.TGG...GA.A.G.T.G. .C.A.A..............G.....A.............. C....TTA....G....G.GGG.G..G..GA.T.A. C...................... 141 139 , 140 139 19:>gi|84874123|gb|CY007970| /Human/1(PB2)/H3N2/New Zealand/2005/06/01/ Influenza A virus (A/Canterbury/33/2005(H3N2)) segment 1, complete sequenc
20 >gi|84873296|gb|CY008082| /Human/1(PB2)/H3N2/New Zealand/2005/07/03/ Influenza A virus (A/Canterbury/129/2005(H3N2)) segment 1, complete sequenc .AA.....A.............A...G...C...A...................... C.A.A.A.TCG....T...G.C.....G....A..G..GTC..AG.....C.TG.TCG...G...T...T.G.G....G.... ...GTGCGGC...G.GGGG...GGA....C.GG.TA....C..TG...A...G.C.C..C.T.....GT.G.....A..C.T.G ........G.A.AGG.TTG......AAA.A........AT..........A....C..... .T.TTT..G.A.AA.AC.TAG.A....T.GT.G....GA.TGGC..G....G.T.G. .C.A.A..............G.....A.............. .....TTA....G....G.GGG.G..G..GA.T.A. C..................T... 142 138 , 142 138 20:>gi|84873296|gb|CY008082| /Human/1(PB2)/H3N2/New Zealand/2005/07/03/ Influenza A virus (A/Canterbury/129/2005(H3N2)) segment 1, complete sequenc
21 >gi|90571570|gb|CY009939| /Human/1(PB2)/H3N2/New Zealand/2005/06/29/ Influenza A virus (A/Canterbury/125/2005(H3N2)) segment 1, complete sequenc .AA.....A.............A...G...C...A...................... C.A.A.A.TCG....T...G.C.....G....A..G..GTC..AG.....C.TG.TCG...G...T...T.G.G....G.... ...GTGCGGC...G.GGGG...GGA....C.GG.TA....C..TG...A...G.C.C..C.T.....GT.G.....A..C.T.G ........G.A.AGG.TTG......AAA.A........AT..........A....C..... .T.TTT..G.A.AA.AC.TAG.A....T.GT.G....GA.TGGC..G....G.T.G. .C.A.A..............G.....A.............. .....TTA....G....G.GGG.G..G..GA.T.A. C..................T... 139 138 , 138 138 21:>gi|90571570|gb|CY009939| /Human/1(PB2)/H3N2/New Zealand/2005/06/29/ Influenza A virus (A/Canterbury/125/2005(H3N2)) segment 1, complete sequenc
22 >gi|84873277|gb|CY008074| /Human/1(PB2)/H3N2/New Zealand/2005/07/02/ Influenza A virus (A/Canterbury/127/2005(H3N2)) segment 1, complete sequenc ...................................G..................... C.A.A.A.TCG....T...G.C..........A..G..GTC..AG.....C.TG.TCG...G...T...T.G.G......... ...GTGCGGC...G.GGGG...GGA....C.GG..A....C..TG...A...G.C.C..C.T.....GT.G........C.T.G ........G.A.AGG.TTG......AAA.A........AT..........A....C..... .T.TTT..G.A.A...C.TAG.A....T.GT.G....GA.TG....G....G.T.G. .C.A.A..............G.....A.............. .....TT.............GG.......G...... C.T.................... 137 115 , 137 115 22:>gi|84873277|gb|CY008074| /Human/1(PB2)/H3N2/New Zealand/2005/07/02/ Influenza A virus (A/Canterbury/127/2005(H3N2)) segment 1, complete sequenc
23 >gi|84094925|gb|CY007810| /Human/1(PB2)/H3N2/New Zealand/2005/03/04/ Influenza A virus (A/Canterbury/02/2005(H3N2)) segment 1, complete sequenc A..............A...........T...G.............CAA......... C...A..GT..A.............A..............CGA.GA....C......G..AG....T................ ......C.G...G...G..........GA..G.........G.....C..A...C........G.CG.............T... ......T.G.ATAGG..........A............A.............T........ A.A.....A.............................A..G....G.....G.... TC.A.....A.T..T.....G.A.C.......T.A.....G .....TTA......T.....GG..A..........A C............G.T....... 78 78 , 78 78 23:>gi|84094925|gb|CY007810| /Human/1(PB2)/H3N2/New Zealand/2005/03/04/ Influenza A virus (A/Canterbury/02/2005(H3N2)) segment 1, complete sequenc
24 >gi|84094906|gb|CY007802| /Human/1(PB2)/H3N2/New Zealand/2005/03/04/ Influenza A virus (A/Canterbury/01/2005(H3N2)) segment 1, complete sequenc A..............A...........T...G.............CAA......... C...A..GT..A.............A..............CGA.GA....C......G..AG....T................ ......C.G...G...G..........GA..G.........G.....C..A...C........G.CG.............T... ......T.G.ATAGG..........A............A.............T........ A.A.....A................................G....G.....G.... TC.A.....A.T..T.....G.A.C.......T.A.....G .....TTA......T.....GG..A..........A C............G.T....... 78 77 , 78 77 24:>gi|84094906|gb|CY007802| /Human/1(PB2)/H3N2/New Zealand/2005/03/04/ Influenza A virus (A/Canterbury/01/2005(H3N2)) segment 1, complete sequenc
25 >gi|84094944|gb|CY007818| /Human/1(PB2)/H3N2/New Zealand/2005/03/06/ Influenza A virus (A/Canterbury/03/2005(H3N2)) segment 1, complete sequenc A..............A...........T...G.............CAA......... C...A..GT..A.............A..............CGA.GA....C......G..AG....T................ ......C.G...G...G..........GA..G.........G.....C..A...C........G.CG.............T... ......T.G.ATAGG..........A............A.............T........ A.A.....A................................G....G.....G.... TC.A.....A.T..T.....G.A.C.......T.A.....G .....TTA......T.....GG..A..........A C............G.T....... 77 77 , 77 77 25:>gi|84094944|gb|CY007818| /Human/1(PB2)/H3N2/New Zealand/2005/03/06/ Influenza A virus (A/Canterbury/03/2005(H3N2)) segment 1, complete sequenc
26 >gi|149780768|gb|CY022604| /Human/1(PB2)/H3N2/New Zealand/2005/01/30/ Influenza A virus (A/Auckland/621/2005(H3N2)) segment 1, complete sequenc ...............A...A.......T...................A..T...... C...A..GT................A..............C...GA....C......G...G..................... ......C.G.......G..............G.........G............C........G.C..............T... ........G.ATA.G..........A............A...................... ..A.....AA...............................G..........GG..- TC.A.....A....T.....G.A.C................ -....TTA............GG.......G...... C...................... 84 55 , 73 53 26:>gi|149780768|gb|CY022604| /Human/1(PB2)/H3N2/New Zealand/2005/01/30/ Influenza A virus (A/Auckland/621/2005(H3N2)) segment 1, complete sequenc
27 >gi|115289517|gb|CY015603| /Human/1(PB2)/H3N2/New Zealand/2005/04/13/ Influenza A virus (A/Waikato/3/2005(H3N2)) segment 1, complete sequenc ...............A...A.......T...................A..T..G... C...A..GT................A..............CG..GA....C......G...G..................... T.....C.G.......G..............G.........G............C........G.C........C.....T... ........G.ATAGA..........A............A...................... ..A.....A................................G..........G.... TC.A.....A....T.....G.A.C................ -....TTA............GG.............. C...................... 80 56 , 72 55 27:>gi|115289517|gb|CY015603| /Human/1(PB2)/H3N2/New Zealand/2005/04/13/ Influenza A virus (A/Waikato/3/2005(H3N2)) segment 1, complete sequenc
28 >gi|113171172|gb|CY014078| /Human/1(PB2)/H3N2/New Zealand/2005/08/10/ Influenza A virus (A/Waikato/7/2005(H3N2)) segment 1, complete sequenc ............................................T.T..G....... ....................................T..........................A........T....A..... ...................................................A................................ .....................G...................A..............T.... ..............A.......................................T.. ..A.............A.....A.................. -................................... C..C................... 30 19 , 19 18 28:>gi|113171172|gb|CY014078| /Human/1(PB2)/H3N2/New Zealand/2005/08/10/ Influenza A virus (A/Waikato/7/2005(H3N2)) segment 1, complete sequenc
29 >gi|113171076|gb|CY014070| /Human/1(PB2)/H3N2/New Zealand/2005/08/09/ Influenza A virus (A/Waikato/8/2005(H3N2)) segment 1, complete sequence ............................................T.T..G....... ....................................T..........................A........T....A..... ...................................................A................................ .....................G...................A..............T.... ..............A.......................................T.. ..A.............A.....A.................. -................................... C..C................... 26 19 , 18 18 29:>gi|113171076|gb|CY014070| /Human/1(PB2)/H3N2/New Zealand/2005/08/09/ Influenza A virus (A/Waikato/8/2005(H3N2)) segment 1, complete sequence
30 >gi|87042664|gb|CY008635| /Human/1(PB2)/H3N2/New Zealand/2005/08/31/ Influenza A virus (A/Canterbury/257/2005(H3N2)) segment 1, complete sequenc .................................................G....... ....................................T..........................A........T.......... ...................................................A................................ .........................................A..............T.... ..............A..........A............................T.. ................A.....A.................. .................................... C..C................... 19 14 , 18 14 30:>gi|87042664|gb|CY008635| /Human/1(PB2)/H3N2/New Zealand/2005/08/31/ Influenza A virus (A/Canterbury/257/2005(H3N2)) segment 1, complete sequenc
31 >gi|115289536|gb|CY015611| /Human/1(PB2)/H3N2/New Zealand/2005/07/12/ Influenza A virus (A/Wellington/4/2005(H3N2)) segment 1, complete sequenc .....................................................G... ................................................................................... .G.................................................................................. ............................................................- ...............................................T......... ......................................... -................................... ....................... 25 5 , 15 3 31:>gi|115289536|gb|CY015611| /Human/1(PB2)/H3N2/New Zealand/2005/07/12/ Influenza A virus (A/Wellington/4/2005(H3N2)) segment 1, complete sequenc
32 >gi|87043113|gb|CY008659| /Human/1(PB2)/H3N2/New Zealand/2005/08/31/ Influenza A virus (A/Canterbury/270/2005(H3N2)) segment 1, complete sequenc ......................................................... ................................................................................... T................................................................................... ............................................................. ......................................................... ......................................... -................................... ....................... 22 2 , 13 1 32:>gi|87043113|gb|CY008659| /Human/1(PB2)/H3N2/New Zealand/2005/08/31/ Influenza A virus (A/Canterbury/270/2005(H3N2)) segment 1, complete sequenc
33 >gi|87042683|gb|CY008627| /Human/1(PB2)/H3N2/New Zealand/2005/08/31/ Influenza A virus (A/Canterbury/256/2005(H3N2)) segment 1, complete sequenc ............................T................C........... ......A.....T..................................T................................... ....................................................G............................... ............................................................. ......................................................... ......................................... .................................... .........T............. 23 7 , 22 7 33:>gi|87042683|gb|CY008627| /Human/1(PB2)/H3N2/New Zealand/2005/08/31/ Influenza A virus (A/Canterbury/256/2005(H3N2)) segment 1, complete sequenc
34 >gi|115289555|gb|CY015619| /Human/1(PB2)/H3N2/New Zealand/2005/07/26/ Influenza A virus (A/Wellington/5/2005(H3N2)) segment 1, complete sequenc .....G.......................................C..T........ ............TG.................................T.A....T...........T................ .................................................................................... ............................................................. .........................A..................A............ .................................C....... -................................... .....................AA 23 15 , 15 14 34:>gi|115289555|gb|CY015619| /Human/1(PB2)/H3N2/New Zealand/2005/07/26/ Influenza A virus (A/Wellington/5/2005(H3N2)) segment 1, complete sequenc
35 >gi|146759987|gb|CY021972| /Human/1(PB2)/H3N2/New Zealand/2005/08/12/ Influenza A virus (A/Waikato/6/2005(H3N2)) segment 1, complete sequenc .....G..............................G...A....C..T........ ............TG.................................T.A....T...........T.............G.. ..........A......................................................................... ............................................................- .........................A..................A............ .................................C....... .................................... .....................AA 20 19 , 18 18 35:>gi|146759987|gb|CY021972| /Human/1(PB2)/H3N2/New Zealand/2005/08/12/ Influenza A virus (A/Waikato/6/2005(H3N2)) segment 1, complete sequenc
36 >gi|115521519|gb|CY016474| /Human/1(PB2)/H3N2/New Zealand/2005/08/09/ Influenza A virus (A/Waikato/18/2005(H3N2)) segment 1, complete sequence .....G..............................G...A....C..T........ ............TG.................................T.A....T...........T.............G.. ..........A......................................................................... ............................................................. .........................A..................A............ .................................C....... .................................... .....................AA 18 18 , 18 18 36:>gi|115521519|gb|CY016474| /Human/1(PB2)/H3N2/New Zealand/2005/08/09/ Influenza A virus (A/Waikato/18/2005(H3N2)) segment 1, complete sequence
37 >gi|113171303|gb|CY014086| /Human/1(PB2)/H3N2/New Zealand/2005/08/09/ Influenza A virus (A/Waikato/16/2005(H3N2)) segment 1, complete sequence .....G..............................G...A....C..T........ ............TG.................................T.A....T...........T.............G.. ..........A......................................................................... ............................................................. .........................A..................A............ .................................C....... -................................... .....................AA 24 19 , 18 18 37:>gi|113171303|gb|CY014086| /Human/1(PB2)/H3N2/New Zealand/2005/08/09/ Influenza A virus (A/Waikato/16/2005(H3N2)) segment 1, complete sequence
38 >gi|113171516|gb|CY014142| /Human/1(PB2)/H3N2/New Zealand/2005/09/13/ Influenza A virus (A/Waikato/12/2005(H3N2)) segment 1, complete sequenc .....G..........................A............C..T........ ............TG.................................T.A....T...........T................ .................................................................................... ............................................................. .........................A..................A............ .................................C....... -................................... ..............T......AA 29 17 , 21 16 38:>gi|113171516|gb|CY014142| /Human/1(PB2)/H3N2/New Zealand/2005/09/13/ Influenza A virus (A/Waikato/12/2005(H3N2)) segment 1, complete sequenc
39 >gi|115289612|gb|CY015643| /Human/1(PB2)/H3N2/New Zealand/2005/08/26/ Influenza A virus (A/Waikato/10/2005(H3N2)) segment 1, complete sequenc .....G.......................................C..T........ ............TG.................................T.A....T...........T................ .................................................................................... ............................................................. .........................A..................A............ .................................C....... -................................... ..............T......AA 25 16 , 16 15 39:>gi|115289612|gb|CY015643| /Human/1(PB2)/H3N2/New Zealand/2005/08/26/ Influenza A virus (A/Waikato/10/2005(H3N2)) segment 1, complete sequenc
40 >gi|149780682|gb|CY022580| /Human/1(PB2)/H3N2/New Zealand/2005/09/29/ Influenza A virus (A/Auckland/616/2005(H3N2)) segment 1, complete sequenc .....G.......................................C..T........ ............TG.................................T.A....T...........T................ .................................................................................... ............................................................. .........................A..................A............ .................................C....... -................................... ..............T......AA 25 16 , 17 15 40:>gi|149780682|gb|CY022580| /Human/1(PB2)/H3N2/New Zealand/2005/09/29/ Influenza A virus (A/Auckland/616/2005(H3N2)) segment 1, complete sequenc
41 >gi|115289574|gb|CY015627| /Human/1(PB2)/H3N2/New Zealand/2005/08/14/ Influenza A virus (A/Wellington/6/2005(H3N2)) segment 1, complete sequenc .....G.......................................C........... ............TG.................................T......T...........T................ .................................................................................... .....T....................................................... ............................................A...........A .................................C....... -................................... .....................AA 23 14 , 15 13 41:>gi|115289574|gb|CY015627| /Human/1(PB2)/H3N2/New Zealand/2005/08/14/ Influenza A virus (A/Wellington/6/2005(H3N2)) segment 1, complete sequenc
42 >gi|85816400|gb|CY008371| /Human/1(PB2)/H3N2/New Zealand/2005/07/11/ Influenza A virus (A/Canterbury/186/2005(H3N2)) segment 1, complete sequenc .....G.......................................C........... ............TG.................................T......T...........T................ .................................................................................... ...........................................................-- ............................................A............ ......................................... .................................... .....................AA 13 12 , 10 10 42:>gi|85816400|gb|CY008371| /Human/1(PB2)/H3N2/New Zealand/2005/07/11/ Influenza A virus (A/Canterbury/186/2005(H3N2)) segment 1, complete sequenc
43 >gi|89112258|gb|CY009051| /Human/1(PB2)/H3N2/New Zealand/2005/07/01/ Influenza A virus (A/Canterbury/124/2005(H3N2)) segment 1, complete sequenc .....G.......................................C........... ............TG.................................T......T...........T................ .................................................................................... ............................................................. ............................................A............ ......................................... .................................... .....................AA 10 10 , 10 10 43:>gi|89112258|gb|CY009051| /Human/1(PB2)/H3N2/New Zealand/2005/07/01/ Influenza A virus (A/Canterbury/124/2005(H3N2)) segment 1, complete sequenc
44 >gi|85816420|gb|CY008379| /Human/1(PB2)/H3N2/New Zealand/2005/07/18/ Influenza A virus (A/Canterbury/204/2005(H3N2)) segment 1, complete sequenc .....G.......................................C........... ............TG.................................T......T...........T................ .................................................................................... ............................................................. ............................................A............ ......................................... .................................... .....................AA 11 10 , 11 10 44:>gi|85816420|gb|CY008379| /Human/1(PB2)/H3N2/New Zealand/2005/07/18/ Influenza A virus (A/Canterbury/204/2005(H3N2)) segment 1, complete sequenc
45 >gi|112787504|gb|CY013247| /Human/1(PB2)/H3N2/New Zealand/2005/07/16/ Influenza A virus (A/Canterbury/232/2005(H3N2)) segment 1, complete sequenc .....G.......................................C........... ............TG.................................T......T...........T................ .................................................................................... ............................................................. ............................................A............ ......................................... .................................... .....................AA 12 10 , 12 10 45:>gi|112787504|gb|CY013247| /Human/1(PB2)/H3N2/New Zealand/2005/07/16/ Influenza A virus (A/Canterbury/232/2005(H3N2)) segment 1, complete sequenc
46 >gi|87043003|gb|CY008579| /Human/1(PB2)/H3N2/New Zealand/2005/07/27/ Influenza A virus (A/Canterbury/230/2005(H3N2)) segment 1, complete sequenc .....G.......................................C........... ............TG.................................T......T...........T................ .................................................................................... ............................................................. ............................................A............ ......................................... .................................... .....................AA 13 10 , 12 10 46:>gi|87043003|gb|CY008579| /Human/1(PB2)/H3N2/New Zealand/2005/07/27/ Influenza A virus (A/Canterbury/230/2005(H3N2)) segment 1, complete sequenc
47 >gi|113170936|gb|CY014030| /Human/1(PB2)/H3N2/New Zealand/2005/07/09/ Influenza A virus (A/Wellington/1/2005(H3N2)) segment 1, complete sequenc .....G.......................................C........... ............TG.................................T......T...........T................ .................................................................................... ............................................................. ............................................A............ ......................................... -................................... .....................AA 19 11 , 11 10 47:>gi|113170936|gb|CY014030| /Human/1(PB2)/H3N2/New Zealand/2005/07/09/ Influenza A virus (A/Wellington/1/2005(H3N2)) segment 1, complete sequenc
48 >gi|113171459|gb|CY014118| /Human/1(PB2)/H3N2/New Zealand/2005/08/15/ Influenza A virus (A/Waikato/9/2005(H3N2)) segment 1, complete sequenc .............................................C........... ............TG.................................T......T...........T................ .................................................................................... ............................................................. ............................................A............ ......................................... -.................T................. .....................AA 26 11 , 16 10 48:>gi|113171459|gb|CY014118| /Human/1(PB2)/H3N2/New Zealand/2005/08/15/ Influenza A virus (A/Waikato/9/2005(H3N2)) segment 1, complete sequenc
49 >gi|87042946|gb|CY008603| /Human/1(PB2)/H3N2/New Zealand/2005/08/17/ Influenza A virus (A/Canterbury/251/2005(H3N2)) segment 1, complete sequenc .......................G.....................C........... ............TG.................................T......T...........T................ .................................................................................... ............................................................. ............................................A............ ......................................... ..................T................. .....................AA 15 11 , 14 11 49:>gi|87042946|gb|CY008603| /Human/1(PB2)/H3N2/New Zealand/2005/08/17/ Influenza A virus (A/Canterbury/251/2005(H3N2)) segment 1, complete sequenc
50 >gi|113171402|gb|CY014094| /Human/1(PB2)/H3N2/New Zealand/2005/08/11/ Influenza A virus (A/Otago/2/2005(H3N2)) segment 1, complete sequenc ...........................................G.C........... ............TG.......................A.........T......T...........T................ ..............G..................................................................... ............................................................. .................A..........................A............ ......................................... -.................T................. .....................AA 25 15 , 17 14 50:>gi|113171402|gb|CY014094| /Human/1(PB2)/H3N2/New Zealand/2005/08/11/ Influenza A virus (A/Otago/2/2005(H3N2)) segment 1, complete sequenc
51 >gi|85833112|gb|CY008451| /Human/1(PB2)/H3N2/New Zealand/2005/09/09/ Influenza A virus (A/Canterbury/269/2005(H3N2)) segment 1, complete sequenc .............................................C........... ............T.A......................A.........................................C... ..............G...........A......................................................... .................................C........................... ......................................................... ......................................... A................................G.. ................A...... 21 11 , 20 11 51:>gi|85833112|gb|CY008451| /Human/1(PB2)/H3N2/New Zealand/2005/09/09/ Influenza A virus (A/Canterbury/269/2005(H3N2)) segment 1, complete sequenc
52 >gi|113171440|gb|CY014110| /Human/1(PB2)/H3N2/New Zealand/2005/08/23/ Influenza A virus (A/Wellington/9/2005(H3N2)) segment 1, complete sequenc .............................................C........... ............T.A...G........................................T...................C... ..............................................................A......G.............. .................................C........................... ......................................................... .......A.....C........................... -..A.............................GA. ....................... 22 15 , 14 14 52:>gi|113171440|gb|CY014110| /Human/1(PB2)/H3N2/New Zealand/2005/08/23/ Influenza A virus (A/Wellington/9/2005(H3N2)) segment 1, complete sequenc
53 >gi|113171478|gb|CY014126| /Human/1(PB2)/H3N2/New Zealand/2005/08/31/ Influenza A virus (A/Otago/4/2005(H3N2)) segment 1, complete sequenc .............................................C........... ............T.A...G........................................T...................C... ..............................................................A......G.............. .................................C........................... ......................................................... .......A.....C...............T........... -..A.............................GA. ....................... 25 16 , 16 15 53:>gi|113171478|gb|CY014126| /Human/1(PB2)/H3N2/New Zealand/2005/08/31/ Influenza A virus (A/Otago/4/2005(H3N2)) segment 1, complete sequenc
54 >gi|113171497|gb|CY014134| /Human/1(PB2)/H3N2/New Zealand/2005/08/31/ Influenza A virus (A/Otago/3/2005(H3N2)) segment 1, complete sequenc .............................................C........... ............T.A...G........................................T...................C... ..............................................................A......G.............. .................................C........................... ......................................................... .......A.....C...............T........... -..A.............................GA. ....................... 24 16 , 15 15 54:>gi|113171497|gb|CY014134| /Human/1(PB2)/H3N2/New Zealand/2005/08/31/ Influenza A virus (A/Otago/3/2005(H3N2)) segment 1, complete sequenc
55 >gi|113171025|gb|CY014062| /Human/1(PB2)/H3N2/New Zealand/2005/08/08/ Influenza A virus (A/Southland/5/2005(H3N2)) segment 1, complete sequenc .................A...........................C.....T..... ............T.A................................................................C... ...........G.......C...................G............................................ .................................C..........................G ...........A............................................. ....A...C........A....................... -..............................C.G.. ..A.................... 31 19 , 23 18 55:>gi|113171025|gb|CY014062| /Human/1(PB2)/H3N2/New Zealand/2005/08/08/ Influenza A virus (A/Southland/5/2005(H3N2)) segment 1, complete sequenc
56 >gi|115521538|gb|CY016482| /Human/1(PB2)/H3N2/New Zealand/2005/08/23/ Influenza A virus (A/Wellington/7/2005(H3N2)) segment 1, complete sequence .................A...........................C.....T..... ............T.A.......A...................................C....................C... ...........G.......C................G..G............................................ .................................C..........................G .........A.A............................................. ....A...C........A....................... -..............................C.G.. ..A.................... 33 23 , 24 22 56:>gi|115521538|gb|CY016482| /Human/1(PB2)/H3N2/New Zealand/2005/08/23/ Influenza A virus (A/Wellington/7/2005(H3N2)) segment 1, complete sequence
57 >gi|113171421|gb|CY014102| /Human/1(PB2)/H3N2/New Zealand/2005/08/23/ Influenza A virus (A/Wellington/8/2005(H3N2)) segment 1, complete sequenc .................A...........................C.....T..... ............T.A...........................................C....................C... ...........G.......C................G..G......................................A..... .................................C..........................G ...........A............................................. ....A...C........A....................... -..............................C.G.. ..A.................... 34 22 , 28 21 57:>gi|113171421|gb|CY014102| /Human/1(PB2)/H3N2/New Zealand/2005/08/23/ Influenza A virus (A/Wellington/8/2005(H3N2)) segment 1, complete sequenc
58 >gi|84873258|gb|CY008066| /Human/1(PB2)/H3N2/New Zealand/2005/06/21/ Influenza A virus (A/Canterbury/67/2005(H3N2)) segment 1, complete sequenc .............................................C......G.... ............T.A..............A.......................C.........................C... .................................................................................... .................................C........................... ......................................................... ......................................... .................................G.. .A..................... 10 10 , 10 10 58:>gi|84873258|gb|CY008066| /Human/1(PB2)/H3N2/New Zealand/2005/06/21/ Influenza A virus (A/Canterbury/67/2005(H3N2)) segment 1, complete sequenc
59 >gi|90571933|gb|CY010091| /Human/1(PB2)/H3N2/New Zealand/2005/08/16/ Influenza A virus (A/Canterbury/250/2005(H3N2)) segment 1, complete sequenc .............................................C......G.T.. ............T.A..............AA......................C..............A.....A....C... .....................................G........A..........................T.......... .................................C........................... ......................................................... ...................................A..... .................................G.. .A.......T............. 20 19 , 20 19 59:>gi|90571933|gb|CY010091| /Human/1(PB2)/H3N2/New Zealand/2005/08/16/ Influenza A virus (A/Canterbury/250/2005(H3N2)) segment 1, complete sequenc
60 >gi|87042702|gb|CY008619| /Human/1(PB2)/H3N2/New Zealand/2005/08/23/ Influenza A virus (A/Canterbury/255/2005(H3N2)) segment 1, complete sequenc .........G...................................C......G.T.. ............T.A..............AA......................C..............A.....A....C... .....................................G........A..........................T.......... .................................C........................... ......................................................... ...................................A..... .................................G.. .A..................... 21 19 , 20 19 60:>gi|87042702|gb|CY008619| /Human/1(PB2)/H3N2/New Zealand/2005/08/23/ Influenza A virus (A/Canterbury/255/2005(H3N2)) segment 1, complete sequenc
61 >gi|87042965|gb|CY008595| /Human/1(PB2)/H3N2/New Zealand/2005/08/03/ Influenza A virus (A/Canterbury/248/2005(H3N2)) segment 1, complete sequenc .............................................C......G.T.. ............T.A..............AA......................C..............A.....A....C... .....................................G........A..........................T.......... .................................C........................... ......................................................... ......................................... .................................G.. .A..................... 19 17 , 18 17 61:>gi|87042965|gb|CY008595| /Human/1(PB2)/H3N2/New Zealand/2005/08/03/ Influenza A virus (A/Canterbury/248/2005(H3N2)) segment 1, complete sequenc
62 >gi|84873514|gb|CY008106| /Human/1(PB2)/H3N2/New Zealand/2005/07/20/ Influenza A virus (A/Canterbury/212/2005(H3N2)) segment 1, complete sequenc .............................................C......G.T.. ............T.A..............AA......................C..............A..........C... ..............................................A..........................T.......... .................................C........................... ......................................................... ......................................... .................................G.. .A..................... 15 15 , 15 15 62:>gi|84873514|gb|CY008106| /Human/1(PB2)/H3N2/New Zealand/2005/07/20/ Influenza A virus (A/Canterbury/212/2005(H3N2)) segment 1, complete sequenc
63 >gi|87042626|gb|CY008651| /Human/1(PB2)/H3N2/New Zealand/2005/06/18/ Influenza A virus (A/Canterbury/266/2005(H3N2)) segment 1, complete sequenc .............................................C........... ............T.A................................................................C... ..........................A......................................................... .................................C.......................C... ........................................................A ......................................... .................................G.. ................A...... 11 10 , 10 10 63:>gi|87042626|gb|CY008651| /Human/1(PB2)/H3N2/New Zealand/2005/06/18/ Influenza A virus (A/Canterbury/266/2005(H3N2)) segment 1, complete sequenc
64 >gi|85833265|gb|CY008355| /Human/1(PB2)/H3N2/New Zealand/2005/06/18/ Influenza A virus (A/Canterbury/64/2005(H3N2)) segment 1, complete sequenc .............................................C........... ............T.A................................................................C... ..........................A......................................................... .................................C.......................C... ........................................................A ......................................... .................................G.. ................A...... 12 10 , 10 10 64:>gi|85833265|gb|CY008355| /Human/1(PB2)/H3N2/New Zealand/2005/06/18/ Influenza A virus (A/Canterbury/64/2005(H3N2)) segment 1, complete sequenc
65 >gi|85833189|gb|CY008403| /Human/1(PB2)/H3N2/New Zealand/2005/07/28/ Influenza A virus (A/Canterbury/235/2005(H3N2)) segment 1, complete sequenc .............................................C........... ............T.A................................................................C... ..........................A......................................................... .................................C........................... ........................................................A ......................................... .................................G.. ................A...... 17 9 , 16 9 65:>gi|85833189|gb|CY008403| /Human/1(PB2)/H3N2/New Zealand/2005/07/28/ Influenza A virus (A/Canterbury/235/2005(H3N2)) segment 1, complete sequenc
66 >gi|115289593|gb|CY015635| /Human/1(PB2)/H3N2/New Zealand/2005/08/11/ Influenza A virus (A/Waikato/15/2005(H3N2)) segment 1, complete sequenc .......................G................................. .......................G........................................................... .................................................................................... ..............................................A.............. ......................................................... ......................................... -...............T................... ....................... 23 5 , 14 4 66:>gi|115289593|gb|CY015635| /Human/1(PB2)/H3N2/New Zealand/2005/08/11/ Influenza A virus (A/Waikato/15/2005(H3N2)) segment 1, complete sequenc
67 >gi|87042721|gb|CY008611| /Human/1(PB2)/H3N2/New Zealand/2005/08/22/ Influenza A virus (A/Canterbury/253/2005(H3N2)) segment 1, complete sequenc ...................................G..................... .......................G........................................................... ..............................................................................A...A. ....................................T.....C...A.T............ ..................................................A...... ......................................... ....A...........T................... ....................... 13 11 , 12 11 67:>gi|87042721|gb|CY008611| /Human/1(PB2)/H3N2/New Zealand/2005/08/22/ Influenza A virus (A/Canterbury/253/2005(H3N2)) segment 1, complete sequenc
68 >gi|85833131|gb|CY008443| /Human/1(PB2)/H3N2/New Zealand/2005/09/02/ Influenza A virus (A/Canterbury/260/2005(H3N2)) segment 1, complete sequenc .........G.........................G..................... .......................G........................................................... ..............................................................................A...A. ....................................T.....C...A.T............ ..................................................A...... ......................................... ....A...........T................... ....................... 16 12 , 15 12 68:>gi|85833131|gb|CY008443| /Human/1(PB2)/H3N2/New Zealand/2005/09/02/ Influenza A virus (A/Canterbury/260/2005(H3N2)) segment 1, complete sequenc
69 >gi|84873030|gb|CY007962| /Human/1(PB2)/H3N2/New Zealand/2005/05/20/ Influenza A virus (A/Canterbury/16/2005(H3N2)) segment 1, complete sequenc ......................................................... ........T.....................A.............G.....C..........G..................... .....................A.........G......G...............C...........................A. ..............G..........A..T.T.............................. ........G............................................G... .........A.............A................. ....................GG.......G...... ....................... 42 21 , 42 21 69:>gi|84873030|gb|CY007962| /Human/1(PB2)/H3N2/New Zealand/2005/05/20/ Influenza A virus (A/Canterbury/16/2005(H3N2)) segment 1, complete sequenc
70 >gi|115289498|gb|CY015595| /Human/1(PB2)/H3N2/New Zealand/2005/01/26/ Influenza A virus (A/Waikato/2/2005(H3N2)) segment 1, complete sequenc ....A.......C................A..........................G C..AA...T.......G...A...G............A..C.A.G.T...C......G...G.............A.....G. .GA...C.G.......G..............G.....................CC............................. T......AG.A.AGGC......C..A........CC.CA.T............G....CA. ........G....A....T.....G.........CAT..T................. .C.A......G............T...C...A......... -....TTAA.A.........GG......AG...... C....A.G.........G..... 82 75 , 74 74 70:>gi|115289498|gb|CY015595| /Human/1(PB2)/H3N2/New Zealand/2005/01/26/ Influenza A virus (A/Waikato/2/2005(H3N2)) segment 1, complete sequenc
71 >gi|113170917|gb|CY014022| /Human/1(PB2)/H3N2/New Zealand/2005/01/25/ Influenza A virus (A/Waikato/1/2005(H3N2)) segment 1, complete sequenc ....A.......C................A..........................G C..AA...T.......G...A...G............A..C.A.G.T...C......G...G.............A.....G. .GA...C.G.......G..............G.....................CC............................. T......AG.A.AGGC......C..A........CC.CA.T............G....CA. ........G....A....T.....G.........CAT..T................. .C.A......G............T...C...A......... -....TTAA.A.........GG......AG...... C....A.G.........G..... 82 75 , 74 74 71:>gi|113170917|gb|CY014022| /Human/1(PB2)/H3N2/New Zealand/2005/01/25/ Influenza A virus (A/Waikato/1/2005(H3N2)) segment 1, complete sequenc
72 >gi|113170955|gb|CY014038| /Human/1(PB2)/H3N2/New Zealand/2005/07/11/ Influenza A virus (A/Wellington/2/2005(H3N2)) segment 1, complete sequenc ...A...C........C....T...A......AC.G...C.CA.............. CT..A...T........T....A.....C...........C...G...A.CG.....G...G.....A..T............ ......C.G.......G............C.A.............G........CG....T...G................... ...GA...GAA.AGG....TG....A......G.....A....G.A........G....-- ........G........................T...........A..........- .C.A................GT....T.C...T.....AA. -AG..TTA............GGG..G...G...... C...A.A....TA.......... 95 84 , 80 80 72:>gi|113170955|gb|CY014038| /Human/1(PB2)/H3N2/New Zealand/2005/07/11/ Influenza A virus (A/Wellington/2/2005(H3N2)) segment 1, complete sequenc
73 >gi|113170993|gb|CY014054| /Human/1(PB2)/H3N2/New Zealand/2005/07/13/ Influenza A virus (A/Wellington/3/2005(H3N2)) segment 1, complete sequenc ...A...C........C....T...A......AC.G...C.CA.............. CT..A...T........T....A.....C...........C...G...A.CG.....G...G.....A..T............ ......C.G.......G............C.A.............G........CG....T...G................... ...GA...GAA.AGG....TG....A......G.....A....G.A........G...... ........G........................T...........A..........- .C.A................GT....T.C...T.....AA. -AG..TTA............GGG..G...G...... C...A.A....TA.......... 90 82 , 81 80 73:>gi|113170993|gb|CY014054| /Human/1(PB2)/H3N2/New Zealand/2005/07/13/ Influenza A virus (A/Wellington/3/2005(H3N2)) segment 1, complete sequenc
74 >gi|85833246|gb|CY008363| /Human/1(PB2)/H3N2/New Zealand/2005/06/27/ Influenza A virus (A/Canterbury/104/2005(H3N2)) segment 1, complete sequenc .......C..........G......A......AC.G......A............A. C...AA..T...................C..G.C......C...G...A.C......G...G.....A..T...........T ......C.G.......G............C.A..........G..G........C.....T.............C......... .A..AA.AGAA.AGG....T....CA..T.A.......A....G.......C..G...... ........G............A.G...................C.A..T........ .C.A................GT...AT.C...T...T.AA. .AG..TTA............GGG..G.A.G...... C.....A.T..TA.....T..A. 89 88 , 88 88 74:>gi|85833246|gb|CY008363| /Human/1(PB2)/H3N2/New Zealand/2005/06/27/ Influenza A virus (A/Canterbury/104/2005(H3N2)) segment 1, complete sequenc
75 >gi|87043056|gb|CY008563| /Human/1(PB2)/H3N2/New Zealand/2005/06/27/ Influenza A virus (A/Canterbury/105/2005(H3N2)) segment 1, complete sequenc .......C..........G......A......AC.G......A............A. C...AA..T...................C..G.C......C...G...A.C......G...G.....A..T...........T ......C.G.......G............C.A..........G..G........C.....T.............C......... .A..AA.AGAA.AGG....T....CA..T.A.......A....G.......C..G...... ........G............A.G...................C.A..T........ .C.A................GT...AT.C...T...T.AA. .AG..TTA............GGG..G.A.G...... C.....A.T..TA.....T..A. 89 88 , 89 88 75:>gi|87043056|gb|CY008563| /Human/1(PB2)/H3N2/New Zealand/2005/06/27/ Influenza A virus (A/Canterbury/105/2005(H3N2)) segment 1, complete sequenc
---Index-----------------------------------------------------------------------------------------------------------------------------------------------GGTGGACTGAGATGCCTGAGGGGAGCACCGTAGTGAAGGTGTGCCTGCCACGAACGA TCCGGGGACTAGCAGCACAAGTGAACGATGGATTGACGACTAGGAGCCCGTAATCCTATGGAAGACCGGCCACAGGCGTTAAC CAGACATATTGAAAAAAAATCGAATGCAGAATTCCGAAAATAACAAGTCTGGATTATCGTCCCAATAAAAAAGCTTGAGTCCGA GCGAGGCGAGGCGATTAGAAACTATGGGCCGCATTTCTGCCGTACGGCCGGTCAATCTTGA GCGCGCTGCGGGCGTCTGCGAGGAAGACAACCACTGATGCGAATGTACAGGAAACAG CTGGGGGGTGACATCAGGCTAAGCTCCTACAGCTGGCGGCA TGAGGCCGGCTCAGCGAACAAAAAGAAGGAGTCAGG TGCTGCGACCGCGACCCACCAGG
-codon-position---------------------------------------------------------------------------------------------------------------------------------------- 2 2 1 2 11 21 1 1 1 2 1 11 1 2 1 22 2 22 1 1 21 1 1 1 1 1 2 2 21 1 1 1 1 121 1 1 2 2 212 212 2 1 1222211222 2 12222221 2 22 22221222222222222 221111111111111211111111111 111211111121121 1111121211 22122 22222 122 2221 22222221222122 22222 2111112111111111111 11111 111221111 2221 221 122222 2
000000000000000000000001111111111111111111111111222222222 00000000000000000000000000000000000111111111111111111111111111111111111122222222222 000000000000000000000000000000000000000000011111111111111111111111111111111111122222 0000000000000000000000000000000000111111111111111111111111111 000000000000000000000000000000000001111111111111111111111 00000000000000000000000000001111111111111 000000000000000000000000000000000000 00000000000000000000000
003334445556777888888990011222333455556668889999000111112 00011122233334444455666677778888999001111112223334444566667777777888889900011122222 000011111222233333444555666777778888889999901111111222333334444555556788889999900001 0000333334455666666666777777788999000111223333333445555566777 111222333334444455556666778899999990000111122223333444555 01122233344444555666666889990011112223333 000111123333444444455556666666666779 00000111122333344466788
570334564797569246789094938069699013561450352799067133577 46723744856691278928569924452449007680014893673450479357891134468247790628905811123 468834899122417778255123358127892357890014971111579179002331569133480415670018913662 3556267891937223344567001123428248046488091133568091235703012 189689011281589904890269385701346780299001613790577048123 82778958902368348025788031260701372561568 089179971489124556834792444556678490 23679245847345633416811
150597980662080501984064278066726550134139931758849209284 09238469500607650938830904735691062531793410385492631964326973598124502552731067862 291724668058340584336687418768655586676985540239822536581280618839548663425649207124 5148489969609347904654390685056319161457320417517397380474684 656568703528413721927814979090735956736357090046729256970 68527433218562037292809331323062256753218 524580176954518149141455356255895233 32890662137573212170039
Code:
000000011111112 00011122 00000001111111112 00001111 00000000111 00000111 00000 000
455677802356680 77937712 14678891333889990 07793334 13344899233 34566113 03344 267
549769996661557 45744851 85583507033560181 50123360 90189504107 56425011 04925 768
906280426734339 73245816 66165862828346490 49631713 67017993962 36392623 59411 700
-codon-position------------- 2 1 2 2 2 2 1 2 211 1222222 111121 1111 21 21222 21111 1
---Index--------------------CGGAGCGGCTGGACC AAGCAACT CCGACCATACGAGTGAC GAACCGCG GTGGCAACTCG GAACTAGG TCCGG GCA
2 >05/24/Canterbury/20 T..G....T..AG.. G...GG.. T...T..........T. AGT..... .C......... .....GA. ..TA. A.G 23 21 , 23 21 2:>05/24/Canterbury/20
3 >05/25/Canterbury/26 T..G....T..AG.. G...GG.. T...T..........T. AGT..... .C......... .....GA. ..TAA A.G 22 22 , 22 22 3:>05/25/Canterbury/26
4 >06/07/Canterbury/34 T..G....T..AG.. G...GG.. T...T..........T. AGT..... .C......... .....GA. ..TAA A.G 23 22 , 23 22 4:>06/07/Canterbury/34
1 >08/16/Canterbury/258 ...........AG.. G....... ................. ........ ........... .G...... ..... ... 32 4 , 32 4 1:>08/16/Canterbury/258
8 >07/08/Canterbury/166 ..A...A......T. ..A...T. ...G.......G..... ...T.ATA ..A..TG.... ..GT.... .T... ... 17 17 , 17 17 8:>07/08/Canterbury/166
9 >07/13/Canterbury/206 ..A...A......T. ..A...T. ...G.......G..... ...T.ATA ..A..TG.... ..GT.... .T... ... 17 17 , 17 17 9:>07/13/Canterbury/206
5 >07/16/Canterbury/220 ..A...A......T. ..A...T. ...G.......G..... ...T.ATA ..A..TG.... ..GT.... .T... ... 17 17 , 17 17 5:>07/16/Canterbury/220
7 >07/22/Canterbury/205 ..A...A......T. ..A...T. ...G.......G..... ...T.ATA ..A..TG.... ..GT.... -T... ... 18 18 , 17 17 7:>07/22/Canterbury/205
6 >07/31/Canterbury/237 ..A...A......T. ..A...T. ...G.......G..... ...T.ATA ..A..TG.... ..GT.... .T... ... 17 17 , 17 17 6:>07/31/Canterbury/237
11 >07/24/Canterbury/233 .....T.T..A...T ........ .T....G..T..T.... ........ .......T... A...C..A ..... ... 12 12 , 12 12 11:>07/24/Canterbury/233
10 >07/27/Canterbury/234 .....T.T..A...T ........ .T....G..T..T.... ........ .......T... A...C..A ..... ... 13 12 , 12 12 10:>07/27/Canterbury/234
13 >07/31/Canterbury/236 .....T.T..A...T ........ .T....GC.T....... ........ .......T... A...C..A ..... ... 17 12 , 17 12 13:>07/31/Canterbury/236
12 >08/01/Canterbury/238 .....T.T..A...T ........ .T....G..T....... ........ .......T... A...C..A ..... ... 11 11 , 11 11 12:>08/01/Canterbury/238
14 >08/01/Canterbury/242 .....T.T..A...T ........ .T....GC.T....... ........ .......T... A...C..A ..... ... 13 12 , 13 12 14:>08/01/Canterbury/242
15 >08/01/Canterbury/259 .....T.T..A...T ........ .T....GC.T....... ........ .......T... A...C..A ..... ... 13 12 , 13 12 15:>08/01/Canterbury/259
17 >05/04/Canterbury/24 ............... ........ ................. ........ ........... .G...... ..... ... 9 1 , 9 1 17:>05/04/Canterbury/24
16 >07/01/Otago/1 ............... ........ ................. ........ ........... ........ -.... ... 17 1 , 16 0 16:>07/01/Otago/1
18 >05/27/Canterbury/29 ....A.......G.. G..T.... ..A.....G.A..C..T ....T... A........AA ........ C.... ... 15 14 , 15 14 18:>05/27/Canterbury/29
19 >06/01/Canterbury/33 ....A.......G.. G..T.... ..A.....G.A..C..T ....T... A........AA ........ C.... ... 16 14 , 16 14 19:>06/01/Canterbury/33
21 >06/29/Canterbury/125 .A.......C..G.. GG.....G .....T........A.. ........ ...AA...C.. ........ ..... .T. 12 12 , 12 12 21:>06/29/Canterbury/125
22 >07/02/Canterbury/127 ............G.. G....... ................. ........ ........... ........ ..... ... 41 2 , 41 2 22:>07/02/Canterbury/127
20 >07/03/Canterbury/129 .A.......C..G.. GG.....G .....T........A.. ........ ...AA...C.. ........ ..... .T. 16 12 , 16 12 20:>07/03/Canterbury/129
---Index--------------------CGGAGCGGCTGGACC AAGCAACT CCGACCATACGAGTGAC GAACCGCG GTGGCAACTCG GAACTAGG TCCGG GCA
-codon-position------------- 2 1 2 2 2 2 1 2 211 1222222 111121 1111 21 21222 21111 1
000000011111112 00011122 00000001111111112 00001111 00000000111 00000111 00000 000
455677802356680 77937712 14678891333889990 07793334 13344899233 34566113 03344 267
549769996661557 45744851 85583507033560181 50123360 90189504107 56425011 04925 768
906280426734339 73245816 66165862828346490 49631713 67017993962 36392623 59411 700