H5N1 Tyva - Fujian Clade 2.3.2

[HenryN]

<TABLE cellPadding=0 width="100%"><TBODY><TR><TD style="WHITE-SPACE: nowrap" vAlign=top width="20%">GQ338087</TD><TD vAlign=top align=left>
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</TD></TR><TR><TD style="PADDING-LEFT: 2.8em" vAlign=top colSpan=3 align=left>Influenza A virus (A/great crested grebe/Tyva/120/2009(H5N1)) segment 4 hemagglutinin (HA) gene, complete cds
gi|251825476|gb|GQ338087.1|[251825476]


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</TD></TR><TR><TD style="PADDING-LEFT: 2.8em" vAlign=top colSpan=3 align=left>Influenza A virus (A/great crested grebe/Tyva/120/2009(H5N1)) segment 6 neuraminidase (NA) gene, complete cds
gi|251825474|gb|GQ338086.1|[251825474]


</TD></TR></TBODY></TABLE></DT></DL>


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</TD></TR><TR><TD style="PADDING-LEFT: 2.8em" vAlign=top colSpan=3 align=left>Influenza A virus (A/black-headed gull/Tyva/115/2009(H5N1)) segment 6 truncated neuraminidase (NA) gene, complete cds
gi|251825472|gb|GQ338085.1|[251825472]


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</TD><TD vAlign=top align=right>


</TD></TR><TR><TD style="PADDING-LEFT: 2.8em" vAlign=top colSpan=3 align=left>Influenza A virus (A/black-headed gull/Tyva/115/2009(H5N1)) segment 4 hemagglutinin (HA) gene, complete cds
gi|251825470|gb|GQ338084.1|[251825470]

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[HenryN]

Re: H5N1 Tyva - Fujian Clade 2.3.2

Fujian clade 2.3.2 in wild birds at Tyva (adjacent to Uvs Lake),

[HenryN]

Re: H5N1 Tyva - Fujian Clade 2.3.2

NA is clade 2.3.4. This is the same H5N1 that was in Japan, Korea, and Primorie. Now it is at Uvs Lake (poised to fly into Europe, Middle East, and Africa in the fall).

[HenryN]

Re: H5N1 Tyva - Fujian Clade 2.3.2

LOCUS GQ338087 1778 bp cRNA linear VRL 13-JUL-2009
DEFINITION Influenza A virus (A/great crested grebe/Tyva/120/2009(H5N1))
segment 4 hemagglutinin (HA) gene, complete cds.
ACCESSION GQ338087
VERSION GQ338087.1 GI:251825476
KEYWORDS .
SOURCE Influenza A virus (A/great crested grebe/Tyva/120/2009(H5N1))
ORGANISM Influenza A virus (A/great crested grebe/Tyva/120/2009(H5N1))
Viruses; ssRNA negative-strand viruses; Orthomyxoviridae;
Influenzavirus A.
REFERENCE 1 (bases 1 to 1778)
AUTHORS Shestopalov,A.M., Silko,N.Y., Sharshov,K.A., Kulak,M.V.,
Susloparov,I.M. and Drozdov,I.G.
TITLE H5N1 Avian Influenza Outbreak in Tyva in 2009 in Russia
JOURNAL Unpublished
REFERENCE 2 (bases 1 to 1778)
AUTHORS Shestopalov,A.M., Silko,N.Y., Sharshov,K.A., Kulak,M.V.,
Susloparov,I.M. and Drozdov,I.G.
TITLE Direct Submission
JOURNAL Submitted (30-JUN-2009) Division to Investigate Emerging Zoonotic
Diseases and Influenza, SRC VB Vector, Novosibirsk Region, Koltsovo
630559, Russia
FEATURES Location/Qualifiers
source 1..1778
/organism="Influenza A virus (A/great crested
grebe/Tyva/120/2009(H5N1))"
/mol_type="viral cRNA"
/strain="A/great crested grebe/Tyva/120/2009"
/serotype="H5N1"
/isolation_source="cloacal swab"
/host="Podiceps cristatus"
/db_xref="taxon:656369"
/segment="4"
/country="Russia"
/collection_date="09-Jun-2009"
gene 17..1720
/gene="HA"
CDS 17..1720
/gene="HA"
/codon_start=1
/product="hemagglutinin"
/protein_id="ACT20896.1"
/db_xref="GI:251825477"
/translation="MEKIVLLFATISLVKSDHICIGYHANNSTEQVDTIME KNVTVTH
AQDILEKTHNGKLCDLNGVKPLILKDCSVAGWLLGNPLCDEFINVPEWSY IVEKANPA
NDLCYPGNFNDYEELKHLLSRINHFEKIQIIPKDSWSDHEASLWVSAACP YQGNSSFF
RNVVWLIKKDNAYPTIKKGYNNTNQEDLLVLWGIHHPNDEAEQTRLYQNP TTYISIGT
STLNQRLVPKIATRSKINGQSGRIDFFWTILKPNDAIHFESNGNFLAPEY AYKIVKKG
DSTIMKSEVEYGNCNTRCQTPIGAINSSMPFHNIHPLTIGECPKYVKSNK LVLATGLR
NSPQRERRRKRGLFGAIAGFIEGGWQGMVDGWYGYHHSNEQGSGYAADKE STQKAIDG
VTNKVNSIIDKMNTQFEAVGREFNNLERRIENLNKKMEDGFLDVWTYNAE LLVLMENE
RTLDFHDSNVKNLYDKVRLQLKDNAKELGNGCFEFYHKCNNECMESVRNG TYDYPQYS
EEARLKREEISGVKLESIGIYQILSIYSTVASSLVLAIMMAGLSLWMCSN GSLQCRIC
I"
ORIGIN
1 ggttcactct gtcaaaatgg agaaaatagt gcttcttttt gcaacaatca gccttgttaa
61 aagcgatcat atttgcattg gttatcatgc aaataactcg acagagcagg ttgacacaat
121 aatggaaaag aacgttactg ttacacatgc ccaagacata ctggaaaaga cacacaacgg
181 gaagctctgc gatctaaatg gagtgaagcc tctgatttta aaagattgta gtgtagcggg
241 atggctcctc ggaaacccat tgtgtgacga attcatcaat gtgccagaat ggtcttacat
301 agtagagaag gccaatccag ccaatgacct ctgttaccca gggaatttca acgattatga
361 agaattgaaa cacctattga gcaggataaa ccattttgag aaaatacaga tcatccccaa
421 agattcttgg tcagatcatg aagcctcatt gtgggtgagc gcagcatgtc cataccaggg
481 aaattcctcc ttcttcagaa atgtggtatg gcttatcaaa aaggacaatg catacccaac
541 aataaagaaa ggctacaata ataccaacca agaagatctc ttggtactgt gggggattca
601 ccatcctaat gatgaggcag agcagacaag gctctatcaa aacccaacca cctatatttc
661 cattgggaca tcaacactaa accagagatt ggtaccaaaa atagccacta gatccaaaat
721 aaacgggcaa agtggcagga tagatttctt ctggacaatt ttaaaaccga atgatgcaat
781 ccacttcgag agtaatggaa atttccttgc tcccgaatat gcatacaaaa ttgtcaagaa
841 aggagactcc acaattatga aaagtgaagt ggaatatggt aactgcaaca ccaggtgtca
901 gactccgata ggggcgataa actctagtat gccattccac aacatacacc ctctcaccat
961 cggagaatgt cccaaatatg tgaaatcaaa caaattagtc cttgcgactg ggctcagaaa
1021 tagtcctcaa agagagagaa gaagaaaaag aggactgttt ggagctatag caggttttat
1081 agagggagga tggcagggaa tggtagatgg ttggtatggg taccaccaca gcaatgagca
1141 ggggagtggg tacgctgcag acaaagaatc tactcaaaag gcaatagacg gagtcaccaa
1201 taaggtcaac tcgatcattg acaaaatgaa cactcagttt gaggccgtag gaagggaatt
1261 taataactta gagaggagaa tagagaattt aaacaagaag atggaagacg gattcctaga
1321 tgtctggact tataatgctg aacttctggt tctcatggaa aatgagagaa ctctagactt
1381 ccatgactca aatgtcaaga acctttacga taaggtcaga ctacagctta aggataatgc
1441 aaaagagttg ggtaatggtt gtttcgagtt ctatcacaaa tgtaataatg aatgtatgga
1501 aagtgtaaga aacggaactt atgactaccc gcagtattca gaagaagcaa gattaaaaag
1561 agaggaaata agtggagtaa aattggaatc aataggaatc taccaaatac tgtcaattta
1621 ttcaacagtg gcgagttccc tagtgctggc aatcatgatg gctggtctat ctttatggat
1681 gtgttccaac gggtcgttac agtgcagaat ttgcatttaa gtttgtgagt tcagattgta
1741 gttaaaaaca cccttgtttc tactggtcat agctgttt

[gsgs]

Re: H5N1 Tyva - Fujian Clade 2.3.2

2 full genomes from Tyva at genbank

bean goose and grebe , both June 22