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wishlist for Censorflu sequences

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  • wishlist for Censorflu sequences

    to track the origin of this pandemic we need
    all the segments and the dates,location+travel+contact history,
    the symptom-onset dates from

    >A/Mexico/4115/2009/04/07
    >A/Mexico/InDRE4487/2009/04/14

    particularly interesting to track the origin are also:
    >A/NY/3178/2009/04/28
    >A/Israel/644/2009/04
    >A/Mexico/InDRE4114/2009
    >A/Narita/1/2009/05/08
    >A/Arizona/01/2009/04/22
    >A/Beijing/01/2009/05/16
    >A/Tennessee/05/2009/04/28
    >A/Korea/01/2009/05/02
    >A/Italy/05/2009/05/03
    I'm interested in expert panflu damage estimates
    my current links: http://bit.ly/hFI7H ILI-charts: http://bit.ly/CcRgT

  • #2
    Re: wishlist for Censorflu sequences

    The information you are requesting will most likely only be available after the pandemic is over, and even then not to common people like you or me.
    http://novel-infectious-diseases.blogspot.com/

    Comment


    • #3
      Re: wishlist for Censorflu sequences

      just search the web

      these are often the first cases in a region so there
      is coverage in the newspapers

      I assume the labs have the frozen samples, they just need some feedback
      which viruses are interesting
      I'm interested in expert panflu damage estimates
      my current links: http://bit.ly/hFI7H ILI-charts: http://bit.ly/CcRgT

      Comment


      • #4
        Re: wishlist for Censorflu sequences

        Originally posted by gsgs View Post
        just search the web

        these are often the first cases in a region so there
        is coverage in the newspapers

        I assume the labs have the frozen samples, they just need some feedback
        which viruses are interesting
        The labs are not taking direction from anonymous internet posters who call swine flu Censorflu.

        The various sequences are generated by individual labs, who sequence what they think is important based on their interest and resources.

        Comment


        • #5
          Re: wishlist for Censorflu sequences

          Originally posted by Laidback Al View Post
          The information you are requesting will most likely only be available after the pandemic is over, and even then not to common people like you or me.
          The request id for human swine sequences. These are being released in real time and already have a significant amount of redundancy. The database holes are largely in swine or earlier isolates (neither of which are on the list on this thread).

          Comment


          • #6
            Re: wishlist for Censorflu sequences

            Well Niman, I guess many of us are anonymous posters and we all should be ignored then?

            If you would read gs's post, he's only asking for the unpublished sequences for those people he listed.

            And he's asking help in trying to match up the actual people with the sequences. A lot of the patient information can be found here with some searching.
            The salvage of human life ought to be placed above barter and exchange ~ Louis Harris, 1918

            Comment


            • #7
              Re: wishlist for Censorflu sequences

              Originally posted by niman View Post

              Quote:
              Originally Posted by Laidback Al
              The information you are requesting will most likely only be available after the pandemic is over, and even then not to common people like you or me.
              The request id for human swine sequences. These are being released in real time and already have a significant amount of redundancy. The database holes are largely in swine or earlier isolates (neither of which are on the list on this thread).
              Unfortunately accompanying case history and epidemiological data is sorely lacking for the published sequences.
              http://novel-infectious-diseases.blogspot.com/

              Comment


              • #8
                Re: wishlist for Censorflu sequences

                set our newshounds on it.
                I've done some research to track down the cases, also mixin,
                but it's tedious. Also a Spanish speaer would be useful.

                So much interest when the cases first appeared, so little now
                that we have the sequences and can really track the flu


                improve our knowledge how flu spreads now.
                Good opportunity
                important task
                I'm interested in expert panflu damage estimates
                my current links: http://bit.ly/hFI7H ILI-charts: http://bit.ly/CcRgT

                Comment


                • #9
                  Re: wishlist for Censorflu sequences

                  Originally posted by gsgs View Post
                  set our newshounds on it. . .
                  The news reports in Mexico were confusing and uneven. While we can look back in time based on sequences that were positive, there is no expectation that local news media would have reported on every sick individual in their community. Especially if the sickness manifested itself as seasonal influenza infection. It was the unusual deaths in Oaxaca (and infections of HCWs) that were initial indications of a novel strain here at FT. But, as you know, Mexico has reported samples much earlier than late April. Why would you expect that there would be local media reports on individuals who were simply sick with "la gripe".
                  http://novel-infectious-diseases.blogspot.com/

                  Comment


                  • #10
                    Re: wishlist for Censorflu sequences

                    as I said, most of the published sequences are from first cases in a region and well reported.
                    Identify those people, contact them, ask them - without violating their anonymity, if they wish so.
                    These records presumably exist, the doctors questioned those people,
                    but it's being kept secret.
                    Don't they realize that it's important for flu-research ?

                    Make a webpage where sequenced people report about their case, their contacts.
                    Invite them individually to participate or ask them on telefone.

                    Just ~400 people with sequences, only 10-20 that are particularly interesting.
                    I'm interested in expert panflu damage estimates
                    my current links: http://bit.ly/hFI7H ILI-charts: http://bit.ly/CcRgT

                    Comment


                    • #11
                      Re: wishlist for Censorflu sequences

                      more segments were uploaded already from:

                      >A/Arizona/01/2009/04/22
                      >A/Tennessee/05/2009/04/28

                      there were some hints about 4115 and 4487 in the paper about the hospitalized
                      people in Mexico City.

                      4115 could be the 50f and 4487 her daughter, 18f

                      original names for keyword search:

                      A/Mexico/4115/2009(H1N1)
                      A/Mexico/InDRE4487/2009(H1N1)
                      A/New York/3178/2009(H1N1)
                      A/Israel/644/2009(H1N1)
                      A/Mexico/InDRE4114/2009(H1N1)
                      A/Narita/1/2009/(H1N1)
                      A/Arizona/01/2009(H1N1)
                      A/Beijing/01/2009(H1N1)
                      A/Tennessee/05/2009(H1N1)
                      A/Korea/01/2009(H1N1)
                      A/Italy/05/2009(H1N1)

                      also
                      A/New Mexico/04/2009(H1N1)
                      m18,26.April close to the original from LaGloria ?
                      I'm interested in expert panflu damage estimates
                      my current links: http://bit.ly/hFI7H ILI-charts: http://bit.ly/CcRgT

                      Comment

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