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new sequences from India, 2006 at genbank

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  • new sequences from India, 2006 at genbank

    new H5N1 sequences from India, February 2006. (2.5 years ago !)
    A/chicken/Jalgaon/12419/2006(H5N1)
    A/chicken/Jalgaon/13732/2006(H5N1)
    A/chicken/Jalgaon/13735/2006(H5N1)

    full genomes, but some parts are missing and the first part of PB2 and last
    part of PA look strange. (or recombination ?, I haven't examined this yet)

    But even if we exclude the strange parts, the viruses have much more mutations than
    other Qinghai viruses from that time.
    e.g. A/Cat/Germany/606/11-03-2006(H5N1) has 5,3,4,4,2,1,3,2 promille difference to
    the supposed original Qinghai virus from Feb.2005 while A/Ck/Jalgaon/12419/18-02-2006(H5N1)
    has 10,9,14,9,6,4,6,8 promille in the 8 segments.

    Closest relatives are the other sequences from India, NIV33491, also Feb.2006
    but still 9,6,7,6,4,2,8,6 promille difference.

    -----edit1--------
    Qinghai-mutations-list updated at

    graphics: http://magictour.free.fr/panflu/qin3wq.GIF

    --------edit2----------
    no suitable donor-sequences found for the "strange parts" in PB2 and PA,
    so I assume it's somehow sequencing errors, which makes the whole sequences
    a bit suspectable with all their other (unexpectedly many) mutations
    I'm interested in expert panflu damage estimates
    my current links: http://bit.ly/hFI7H ILI-charts: http://bit.ly/CcRgT
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