Re: Sequences at Genbank!
I stand corrected. First cases were Yokohama area - flight from Canada - around May 9th.
I stand corrected. First cases were Yokohama area - flight from Canada - around May 9th.
******-substrains ------------------ name (markers) [#30.May,#12.June] marker1(segment),... ---------------------------------------------------------------- early Mex (0)[6,6] Northern (2)[8,9] A1741C(3),C1118T(5) swine (6)[6,6] A0588G(3),A1741C(3),C0022A(4),C1118T(5),A0283G(6),C0738A(8) Jersey (6)[6,8] G0799A(1),A1741C(3),G0687T(4),A0877G(4),G1173A(4),C1118T(5) Hamburg (3)[10,12] A1577G(1),A1741C(3),C1118T(5) Texas (7)[9,9] G1308A(1),T0450C(2),A0561C(3),G1173A(4),G1563A(4),G0522A(7),A0775G(8) early US (3)[4,5] A1218G(1),G1986T(3),A1044G(6) airplane (1)[6,7] G0546A(1) England (7)[7,9] G0546A(1),A2030G(1),A0300G(2),A1058G(2),A0008G(3),C0145A(4),C0132T(5) Korea (3)[1,2] G0298A(5),G1143A(5),G0316A(6) Japan (9)[9,9] T1711C(1),G1945A(1),G0636A(2),T2000C(2),G0936A(3),G0298A(5),G1143A(5),G0316A(6),G0658A(8) pre-Cancun (5)[11,14] C1408T(4),G0298A(5),G1143A(5),G0316A(6),A0742G(6) Cancun (11)[73,111] G2163A(1),T0658A(4),C1408T(4),G0298A(5),G1143A(5),G1248A(5),G0316A(6),A0742G(6),G0492A(7),G0600A(7),A0367G(8)
******-substrains ------------------ name (markers) [#30.May,#12.June] marker1(segment),... ---------------------------------------------------------------- early Mex (0)[6,6] Northern (2)[8,9] A1741C(3),C1118T(5) swine (6)[6,6] A0588G(3),A1741C(3),C0022A(4),C1118T(5),A0283G(6),C0738A(8) Jersey (6)[6,8] G0799A(1),A1741C(3),G0687T(4),A0877G(4),G1173A(4),C1118T(5) Hamburg (3)[10,12] A1577G(1),A1741C(3),C1118T(5) Texas (7)[9,9] G1308A(1),T0450C(2),A0561C(3),G1173A(4),G1563A(4),G0522A(7),A0775G(8) early US (3)[4,5] A1218G(1),G1986T(3),A1044G(6) airplane (1)[6,7] G0546A(1) England (7)[7,9] G0546A(1),A2030G(1),A0300G(2),A1058G(2),A0008G(3),C0145A(4),C0132T(5) Korea (3)[1,2] G0298A(5),G1143A(5),G0316A(6) Japan (9)[9,9] T1711C(1),G1945A(1),G0636A(2),T2000C(2),G0936A(3),G0298A(5),G1143A(5),G0316A(6),G0658A(8) pre-Cancun (5)[11,14] C1408T(4),G0298A(5),G1143A(5),G0316A(6),A0742G(6) Cancun (11)[73,111] G2163A(1),T0658A(4),C1408T(4),G0298A(5),G1143A(5),G1248A(5),G0316A(6),A0742G(6),G0492A(7),G0600A(7),A0367G(8)
Cancun: 1 >A/Luxembourg/43/2009/06/01 ..A ... .. .AT .A.AA AG AA G 3 >A/Moscow/02/2009/05/26 ..A ... .. .AT .A.AA AG AA G 4 >A/Moscow/01/2009/05/21 ..A ... .. .AT .A.AA AG AA G 5 >A/Moscow/IIV03/2009/06/03 ..A ... .. .AT .A.AA AG AA G pre-Cancun 6 >A/Paris/2591/2009/05/01 ... ... .. ..T .A.A. AG .. . northern 7 >A/Italy/05/2009/05/03 ... ... .C ... .A... AG .. . 8 >A/Paris/2629/2009/05/11 ... ... .C ... ..T.. .. .. . 9 >A/Hamburg/4/2009// ... ... .C ... ..T.. .. .. . airplane 10 >A/England/195/2009/04/28 AG. .GG G. A.. T.... .. .. . 11 >A/Paris/2592/2009/05/01 AG. TGG G. A.. T.... .. .. . 12 >A/Paris/2580/2009/04/30 AG. TGG G. A.. T.... .. .. . 14 >A/Paris/2590/2009/04/30 A.. T.. .. ... ..... .. .. . ---Index-----------------------------------GAG CAA AA CTC CGCGG GA GG A -codon-position---------------------------- 2 1 2 21 111 12 11 1 022 001 01 001 00111 00 00 0 501 030 07 164 12112 37 46 3 436 105 04 450 39144 14 90 6 603 908 81 588 28838 62 20 7
1,PB2,A44S,130 1,PB2,M64T,190 1,PB2,A199S,595 1,PB2,T271A,811 1,PB2,L475M,1423 1,PB2,D567N,1699 1,PB2,A588I,1762 1,PB2,E627K,1879 1,PB2,A661T,1981 1,PB2,V667I,1999 1,PB2,A674T,2020 1,PB2,D701N,2101 1,PB2,K702R,2104 2,PB1,P28L,82 2,PB1,D55N,163 2,PB1,I100A,298 2,PB1,N375S,1123 2,PB1,T552S,1654 2,PB1-F2,P28L,176 2,PB1-F2,P48Q,236 2,PB1-F2,D55N,257 2,PB1-F2,N66S,290 2,PB1-F2,I100A,392 2,PB1-F2,T552S,1748 3,PA,P28L,82 3,PA,D55N,163 3,PA,R57Q,169 3,PA,V100A,298 3,PA,T129I,385 3,PA,S225C,673 3,PA,L268I,802 3,PA,A337S,1009 3,PA,A404S,1210 3,PA,S409N,1225 3,PA,T552S,1654 4,HA,D160K,478 4,HA,K189Q,565 4,HA,E190D,568 4,HA,S221P,661 4,HA,V229A,685 4,HA,F251L,751 4,HA,Y258F,772 5,NP,G16D,46 5,NP,V33I,97 5,NP,I61L,181 5,NP,R100V,298 5,NP,L136M,406 5,NP,L283P,847 5,NP,R305K,913 5,NP,F313Y,937 5,NP,Q357K,1069 6,NA,E119A,355 6,NA,E119G,355 6,NA,E119N,355 6,NA,E119V,355 6,NA,R152K,454 6,NA,H274Y,820 6,NA,H275Y,823 6,NA,R293K,877 6,NA,N294S,880 6,NA,N295S,883 7,M2,A16G,734 7,M2,E16G,734 7,M2,S20N,746 7,M2,L26F,764 7,M2,V27A,767 7,M2,A30T,776 7,M2,S31N,779 7,M2,G34E,788 7,M2,C55F,851 7,M1,I15V,43 7,M1,K27R,79 7,M1,K101R,301 7,M1,V115I,343 7,M1,T121A,361 7,M1,T137A,409 7,M1,A166V,496 7,M1,I168T,502 7,M1,N207S,619 7,M1,N224S,670 8,NS2,F55L,641 8,NS1,I81M,241 8,NS1,T92E,274 8,NS1,P215T,643 8,NS1,E227R,679
Alanine,Ala,A,4,GCT,GCC,GCA,GCG Arginine,Arg,R,6,CGT,CGC,CGA,CGG,AGA,AGG Asparagine,Asn,N,2,AAT,AAC AsparticAcid,Asp,D,2,GAT,GAC Cysteine,Cys,C,2,TGT,TGC GlutamicAcid,Glu,E,2,GAA,GAG Glutamine,Gln,Q,2,CAA,CAG Glycine,Gly,G,4,GGT,GGC,GGA,GGG Histidine,His,H,2,CAT,CAC Isoleucine,Ile,I,3,ATT,ATC,ATA Leucine,Leu,L,6,TTA,TTG,CTT,CTC,CTA,CTG Lysine,Lys,K,2,AAA,AAG Methionine,Met,M,1,ATG Phenylalanine,Phe,F,2,TTT,TTC Proline,Pro,P,4,CCT,CCC,CCA,CCG Serine,Ser,S,6,TCT,TCC,TCA,TCG,AGT,AGC Threonine,Thr,T,4,ACT,ACC,ACA,ACG Tryptophan,Trp,W,1,TGG Tyrosine,Tyr,Y,2,TAT,TAC Valine,Val,V,4,GTT,GTC,GTA,GTG STOP,Sto,},3,TAG,TGA,TAA hydrophobic:GAVLIMFWP hydrophilic:STCYNQ,DE,KRH
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