LOCUS FJ264950 1698 bp cRNA linear VRL 09-JAN-2009
DEFINITION Influenza A virus (A/Denmark/122/2008(H1N1)) segment 4
hemagglutinin (HA) gene, complete cds.
ACCESSION FJ264950
VERSION FJ264950.1 GI:208342502
KEYWORDS .
SOURCE Influenza A virus (A/Denmark/122/2008(H1N1))
ORGANISM Influenza A virus (A/Denmark/122/2008(H1N1))
Viruses; ssRNA negative-strand viruses; Orthomyxoviridae;
Influenzavirus A.
REFERENCE 1 (bases 1 to 1698)
AUTHORS Bragstad,K., Astrup,B.S., Jensen,T.G. and Nielsen,L.P.
TITLE Fatal influenza due to oseltamivir resistant H1N1 influenza virus
infection - complete virus genome characterization
JOURNAL Unpublished
REFERENCE 2 (bases 1 to 1698)
AUTHORS Bragstad,K., Astrup,B.S., Jensen,T.G. and Nielsen,L.P.
TITLE Direct Submission
JOURNAL Submitted (10-SEP-2008) Department of Virology, Statens Serum
Institut, Artillerivej 5, Copenhagen 2300, Denmark
COMMENT GenBank Accession Numbers FJ264950, FJ264981, FJ264985, FJ264988,
FJ264992, FJ264997, FJ265014 and FJ265017 represent sequences from
the 8 segments of Influenza A virus (A/Denmark/122/2008(H1N1)).
FEATURES Location/Qualifiers
source 1..1698
/organism="Influenza A virus (A/Denmark/122/2008(H1N1))"
/mol_type="viral cRNA"
/strain="A/Denmark/122/2008"
/serotype="H1N1"
/host="Homo sapiens"
/db_xref="taxon:564809"
/segment="4"
/country="Denmark"
/collection_date="13-Feb-2008"
gene 1..1698
/gene="HA"
CDS 1..1698
/gene="HA"
/codon_start=1
/product="hemagglutinin"
/protein_id="ACI25630.1"
/db_xref="GI:208342503"
/translation="MKVKLVVLLCTFTATYADTICIGYHANNSTDTVDTVL EKNVTVT
HSVNLLENSHNGKLCLLKGIAPLQLGNCSVAGWILGNPECELLISKESWS YIVEKPNP
ENGTCYPGHFADYEELREQLSSVSSFERFEIFPKESSWPNHTVTGVSASC SHNGESSF
YRNLLWLTGKNGLYPNLSKSYANNKEKEVLVLWGVHHPPNIGDQKALYHT ENAYVSVV
SSHYSRKFTPEIAKRPKVRDQEGRINYYWTLLEPGDTIIFEANGNLIAPR YAFALSRG
FGSGIINSNAPMDKCDAKCQTPQGAINSSLPFQNVHPVTIGECPKYVRSA KLRMVTGL
RNIPSIQSRGLFGAIAGFIEGGWTGMVDGWYGYHHQNEQGSGYAADQKST QNAINGIT
NKVNSVIEKMNTQFTAVGKEFNKLERRMENLNKKVDDGFIDIWTYNAELL VLLENERT
LDFHDSNVKNLYEKVKSQLKNNAKEIGNGCFEFYHKCNDECMESVKNGTY DYPKYSEE
SKLNREKIDGVKLESMGVYQILAIYSTVASSLVLLVSLGAISFWMCSNGS LQCRICI"
ORIGIN
1 atgaaagtaa aactagtggt cctgttatgc acatttacag ctacatatgc agacacaata
61 tgtataggct accatgctaa caactcgacc gacactgttg acacagtact tgaaaagaat
121 gtgacagtga cacactctgt caacctgctt gagaacagtc acaatggaaa actatgtcta
181 ttaaaaggaa tagccccact acaattgggt aactgcagcg ttgccgggtg gatcttagga
241 aacccagaat gcgaattact gatttccaag gagtcatggt cctacattgt agaaaaacca
301 aatcctgaga atggaacatg ttacccaggg catttcgctg actatgagga actgagggag
361 caattgagtt cagtatcttc atttgagagg ttcgaaatat tccccaaaga aagctcatgg
421 cccaaccaca ccgtaaccgg agtgtcagca tcatgctccc ataatgggga aagcagtttt
481 tacagaaatt tgctatggct gacggggaag aatggtttgt acccaaacct gagcaagtcc
541 tatgcaaaca acaaagaaaa agaagtcctt gtactatggg gtgttcatca cccgccaaac
601 ataggtgacc aaaaggccct ctatcataca gaaaatgctt atgtttctgt agtgtcttca
661 cattatagca gaaaattcac cccagaaata gccaaaagac ccaaagtaag agatcaagaa
721 ggaagaatca actactactg gactctgctt gaacccgggg atacaataat atttgaggca
781 aatggaaatc taatagcgcc aagatatgct ttcgcactga gtagaggctt tggatcagga
841 atcatcaact caaatgcacc aatggataaa tgtgatgcga agtgccaaac acctcaggga
901 gctataaaca gcagtcttcc tttccagaac gtacacccag tcacaatagg agagtgtcca
961 aagtatgtca ggagtgcaaa attaaggatg gttacaggac taaggaacat cccatccatt
1021 caatccagag gtttgtttgg agccattgcc ggtttcattg aagggggatg gactggaatg
1081 gtagatggtt ggtatggtta tcatcatcag aatgagcaag gatctggcta tgctgcagat
1141 caaaaaagca cacaaaatgc cattaatggg attacaaaca aggtgaattc tgtaattgag
1201 aaaatgaaca ctcaattcac agcagtgggc aaagaattca acaaattgga aagaaggatg
1261 gaaaacttga ataaaaaagt tgatgatgga tttatagaca tttggacata taatgcagaa
1321 ctgttggttc tactggaaaa tgaaaggact ttggatttcc atgactccaa tgtgaagaat
1381 ctgtatgaga aagtaaaaag ccagttaaag aataatgcta aagaaatagg aaatgggtgt
1441 tttgaattct atcacaagtg taacgatgaa tgcatggaga gtgtaaagaa tggaacttat
1501 gactatccaa aatattccga agaatcaaag ttaaacaggg agaaaattga tggagtgaaa
1561 ttggaatcaa tgggagtcta tcagattctg gcgatctact caacagtcgc cagttctctg
1621 gttcttttgg tctccctggg ggcaatcagc ttctggatgt gttccaatgg gtctttgcag
1681 tgtagaatat gcatctaa
DEFINITION Influenza A virus (A/Denmark/122/2008(H1N1)) segment 4
hemagglutinin (HA) gene, complete cds.
ACCESSION FJ264950
VERSION FJ264950.1 GI:208342502
KEYWORDS .
SOURCE Influenza A virus (A/Denmark/122/2008(H1N1))
ORGANISM Influenza A virus (A/Denmark/122/2008(H1N1))
Viruses; ssRNA negative-strand viruses; Orthomyxoviridae;
Influenzavirus A.
REFERENCE 1 (bases 1 to 1698)
AUTHORS Bragstad,K., Astrup,B.S., Jensen,T.G. and Nielsen,L.P.
TITLE Fatal influenza due to oseltamivir resistant H1N1 influenza virus
infection - complete virus genome characterization
JOURNAL Unpublished
REFERENCE 2 (bases 1 to 1698)
AUTHORS Bragstad,K., Astrup,B.S., Jensen,T.G. and Nielsen,L.P.
TITLE Direct Submission
JOURNAL Submitted (10-SEP-2008) Department of Virology, Statens Serum
Institut, Artillerivej 5, Copenhagen 2300, Denmark
COMMENT GenBank Accession Numbers FJ264950, FJ264981, FJ264985, FJ264988,
FJ264992, FJ264997, FJ265014 and FJ265017 represent sequences from
the 8 segments of Influenza A virus (A/Denmark/122/2008(H1N1)).
FEATURES Location/Qualifiers
source 1..1698
/organism="Influenza A virus (A/Denmark/122/2008(H1N1))"
/mol_type="viral cRNA"
/strain="A/Denmark/122/2008"
/serotype="H1N1"
/host="Homo sapiens"
/db_xref="taxon:564809"
/segment="4"
/country="Denmark"
/collection_date="13-Feb-2008"
gene 1..1698
/gene="HA"
CDS 1..1698
/gene="HA"
/codon_start=1
/product="hemagglutinin"
/protein_id="ACI25630.1"
/db_xref="GI:208342503"
/translation="MKVKLVVLLCTFTATYADTICIGYHANNSTDTVDTVL EKNVTVT
HSVNLLENSHNGKLCLLKGIAPLQLGNCSVAGWILGNPECELLISKESWS YIVEKPNP
ENGTCYPGHFADYEELREQLSSVSSFERFEIFPKESSWPNHTVTGVSASC SHNGESSF
YRNLLWLTGKNGLYPNLSKSYANNKEKEVLVLWGVHHPPNIGDQKALYHT ENAYVSVV
SSHYSRKFTPEIAKRPKVRDQEGRINYYWTLLEPGDTIIFEANGNLIAPR YAFALSRG
FGSGIINSNAPMDKCDAKCQTPQGAINSSLPFQNVHPVTIGECPKYVRSA KLRMVTGL
RNIPSIQSRGLFGAIAGFIEGGWTGMVDGWYGYHHQNEQGSGYAADQKST QNAINGIT
NKVNSVIEKMNTQFTAVGKEFNKLERRMENLNKKVDDGFIDIWTYNAELL VLLENERT
LDFHDSNVKNLYEKVKSQLKNNAKEIGNGCFEFYHKCNDECMESVKNGTY DYPKYSEE
SKLNREKIDGVKLESMGVYQILAIYSTVASSLVLLVSLGAISFWMCSNGS LQCRICI"
ORIGIN
1 atgaaagtaa aactagtggt cctgttatgc acatttacag ctacatatgc agacacaata
61 tgtataggct accatgctaa caactcgacc gacactgttg acacagtact tgaaaagaat
121 gtgacagtga cacactctgt caacctgctt gagaacagtc acaatggaaa actatgtcta
181 ttaaaaggaa tagccccact acaattgggt aactgcagcg ttgccgggtg gatcttagga
241 aacccagaat gcgaattact gatttccaag gagtcatggt cctacattgt agaaaaacca
301 aatcctgaga atggaacatg ttacccaggg catttcgctg actatgagga actgagggag
361 caattgagtt cagtatcttc atttgagagg ttcgaaatat tccccaaaga aagctcatgg
421 cccaaccaca ccgtaaccgg agtgtcagca tcatgctccc ataatgggga aagcagtttt
481 tacagaaatt tgctatggct gacggggaag aatggtttgt acccaaacct gagcaagtcc
541 tatgcaaaca acaaagaaaa agaagtcctt gtactatggg gtgttcatca cccgccaaac
601 ataggtgacc aaaaggccct ctatcataca gaaaatgctt atgtttctgt agtgtcttca
661 cattatagca gaaaattcac cccagaaata gccaaaagac ccaaagtaag agatcaagaa
721 ggaagaatca actactactg gactctgctt gaacccgggg atacaataat atttgaggca
781 aatggaaatc taatagcgcc aagatatgct ttcgcactga gtagaggctt tggatcagga
841 atcatcaact caaatgcacc aatggataaa tgtgatgcga agtgccaaac acctcaggga
901 gctataaaca gcagtcttcc tttccagaac gtacacccag tcacaatagg agagtgtcca
961 aagtatgtca ggagtgcaaa attaaggatg gttacaggac taaggaacat cccatccatt
1021 caatccagag gtttgtttgg agccattgcc ggtttcattg aagggggatg gactggaatg
1081 gtagatggtt ggtatggtta tcatcatcag aatgagcaag gatctggcta tgctgcagat
1141 caaaaaagca cacaaaatgc cattaatggg attacaaaca aggtgaattc tgtaattgag
1201 aaaatgaaca ctcaattcac agcagtgggc aaagaattca acaaattgga aagaaggatg
1261 gaaaacttga ataaaaaagt tgatgatgga tttatagaca tttggacata taatgcagaa
1321 ctgttggttc tactggaaaa tgaaaggact ttggatttcc atgactccaa tgtgaagaat
1381 ctgtatgaga aagtaaaaag ccagttaaag aataatgcta aagaaatagg aaatgggtgt
1441 tttgaattct atcacaagtg taacgatgaa tgcatggaga gtgtaaagaa tggaacttat
1501 gactatccaa aatattccga agaatcaaag ttaaacaggg agaaaattga tggagtgaaa
1561 ttggaatcaa tgggagtcta tcagattctg gcgatctact caacagtcgc cagttctctg
1621 gttcttttgg tctccctggg ggcaatcagc ttctggatgt gttccaatgg gtctttgcag
1681 tgtagaatat gcatctaa
Comment