recombination in PB2

[gsgs]

here are the best candidates for recombination from
a search of 878 PB2-sequences from H1,H5,H7,H9 - viruses.
Note, that the two recombinants are always from the same H- class

score              virus 1                         virus2
--------------------------------------------------------------------------
00000000000000  Tree sparrow/Henan/2/04(H5N1) Tree sparrow/Henan/4/04() 
00000000000000  Ck/Viet Nam/38/2004(H5N1)     SCk/HK/YU100/2002(H5N1) 
00000000000000  Dk/Guangxi/668/2004(H5N1)     goose/Guangxi/914/2004() 
00000000000000  swine/Alberta/56626/03(H1N1)  swine/Ontario/53518/03() 
00000000000014  Turkey/California/189/66(H9N2)turkey/Wisconsin/66(H9N2) 
00000000000080  WildDk/Guangdong/314/04(H5N1) Ck/Henan/13/2004 (H5N1) 
00000000616322  Ck/Henan/43/02(H9N2)          Ck/Jilin/53/01(H9N2) 
00000002931656  swine/Ontario/55383/04(H1N2)  Swine/Tennessee/24/77 () 
00000005653026  Dk/Shantou/1042/00(H9N2)      Dk/Shantou/1043/00(H9N2) 
00000016234763  Dk/Shantou/1881/00(H9N2)      Dk/HK/Y439/97(H9N2) 
00000024360053  goose/HK/23/1978(H5N3)        Tree sparrow/Henan/1/04() 
00000448690774  swine/Korea/S452/2004(H9N2)   Ck/Korea/S4/03(H9N2) 
 
 
 
 
[FONT=Arial]p=0.0000000000000000000 n1= 79 n2=512 length=2280 differences= 114 split=1250 0079 A/Tree sparrow/Henan/2/2004(H5N1)          0512 A/Tree sparrow/Henan/4/2004(H5N1)
p=0.0000000000000000000 n1=114 n2=143 length=2274 differences=  75 split=1650 0114 A/Ck/Viet Nam/38/2004(H5N1)                0143 A/SCk/HK/YU100/2002(H5N1)
p=0.0000000000000000000 n1=367 n2=489 length=2268 differences=  84 split=1450 0367 A/duck/Guangxi/668/2004(H5N1)              0489 A/goose/Guangxi/914/2004(H5N1)
p=0.0000000000000000000 n1=753 n2=814 length=2282 differences= 299 split= 550 0753 A/swine/Alberta/56626/03(H1N1)             0814 A/swine/Ontario/53518/03(H1N1)
p=0.0000000000000000014 n1=867 n2=868 length=2257 differences=  84 split=1400 0867 A/Turkey/California/189/66(H9N2)           0868 A/turkey/Wisconsin/66(H9N2)
p=0.0000000000000000080 n1=186 n2=310 length=2341 differences=  78 split=1150 0186 A/WildDuck/Guangdong/314/2004 (H5N1)       0310 A/Chicken/Henan/13/2004 (H5N1)
p=0.0000000000000616322 n1=428 n2=459 length=2341 differences=  59 split=1900 0428 A/chicken/Henan/43/02(H9N2)                0459 A/chicken/Jilin/53/01(H9N2)
p=0.0000000000002931656 n1=754 n2=756 length=2280 differences=  47 split=1900 0754 A/swine/Ontario/55383/04(H1N2)             0756 A/Swine/Tennessee/24/77 (H1N1)
p=0.0000000000005653026 n1= 46 n2= 48 length=1302 differences=  44 split= 550 0046 A/Duck/Shantou/1042/00(H9N2)               0048 A/Duck/Shantou/1043/00(H9N2)
p=0.0000000000016234763 n1=384 n2=511 length=1231 differences= 105 split= 200 0384 A/Duck/Shantou/1881/00(H9N2)               0511 A/Duck/Hong Kong/Y439/97(H9N2)
p=0.0000000000024360053 n1=579 n2=581 length=2280 differences= 108 split= 600 0579 A/goose/Hong Kong/23/1978(H5N3)            0581 A/Tree sparrow/Henan/1/2004(H5N1)
p=0.0000000000448690774 n1= 92 n2=557 length=1196 differences=  37 split= 950 0092 A/swine/Korea/S452/2004(H9N2)              0557 A/chicken/Korea/S4/03(H9N2)

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