Announcement

Collapse
No announcement yet.

Influenza: Random Thoughts and Comments

Collapse
X
 
  • Filter
  • Time
  • Show
Clear All
new posts

  • gsgs
    replied
    Re: Influenza: Random Thoughts and Comments

    while examining deaths from cold-spells
    I found the London fogs from 1880,1873,1863

    the Registrar-General's report for the week ending February 7th. The deaths in London were 3,376, or 1,657 more than they ought -to have been, the death-rate having risen from 24.6 per 1,000 to 48-1 per 1,000. The increase was in great measure in deaths from diseases of the respiratory organs, which rose to 1,557 in -one week, nearly four times the average, which is 439 per week ; and from whoopin
    Attached Files

    Leave a comment:


  • gsgs
    replied
    Re: Influenza: Random Thoughts and Comments

    Air Pollution and Health - Google Books
    Holgate

    google links are awful , use search engine
    Attached Files

    Leave a comment:


  • gsgs
    replied
    Re: Influenza: Random Thoughts and Comments

    update



    (sorry, I had to correct the earlier version from about 1 hour ago)



    see the (positive) effect of Christmas holiday in the 5-14 agegroup
    Attached Files

    Leave a comment:


  • mixin
    replied
    Re: Influenza: Random Thoughts and Comments

    Emily, thanks for your link. It has a lot of good info.

    I always wondered how the flu opened the door for bacteria; this from your quote explains it.

    The interactions between influenza virus and bacteria have most thoroughly been established with streptococcus pneumoniae. As the viral neuraminidase cleaves sialic acid to release new viral particles from host cells, damage to the epithelial layer of the airways occurs, exposing binding sites necessary for adherence of the pneumococcus.

    Leave a comment:


  • mixin
    replied
    Re: Influenza: Random Thoughts and Comments

    I'm putting your chart here. What happened in 2000 that made Strep increase?

    Click image for larger version

Name:	Strep and Staph Comparison.jpg
Views:	1
Size:	46.4 KB
ID:	661318

    This is from your CDC link. Notice that same age group that we've discussed (5-24) has the lowest mortality. Look at how it increases beginning with the 25-34 group. Do we have that same link for staph so we can compare ages?

    Click image for larger version

Name:	Strep Pneumonia CDC Code.jpg
Views:	1
Size:	107.3 KB
ID:	661319

    Leave a comment:


  • gsgs
    replied
    Re: Influenza: Random Thoughts and Comments

    comparing strep and staph pneumonia deaths gives nothing
    remarkable at first sight



    ICD 10 code for Pneumonia due to staphylococcus. Get free rules, notes, crosswalks, synonyms, history for ICD-10 code J15.2.

    ICD 10 code for Pneumonia due to other streptococci. Get free rules, notes, crosswalks, synonyms, history for ICD-10 code J15.4.

    ICD 10 code for Pneumonia due to Streptococcus pneumoniae. Get free rules, notes, crosswalks, synonyms, history for ICD-10 code J13.



    ICD7:1959-1967 bacteria not distinguished
    ICD8:1968-1978
    ICD9:1979-1998
    ICD10:1999-

    specifications changed in 1979 and 1999, so changes in those years are
    probably due to changes in reporting guidelines


    Code:
    reported US-pneumonia-deaths 1999-2010
    
        staph strep  ratio
    ---------------------
    Jan  1407  1475  1.0483 
    Feb  1549  1155   .7455 
    Mar  1505  1105   .7342 
    Apr  1200   831   .6925 
    May   989   682   .6895 
    Jun   897   495   .5518 
    Jul   887   337   .3799 
    Aug   796   255   .3203 
    Sep   770   359   .4657 
    Oct   872   476   .5458 
    Nov   921   691   .7508 
    Dec  1176  1041   .8852
    Code:
    by 20 age5groups
    
     J13 J152 J154
    ----------------
      71   75  157 
      12   14   24 
       *   39   17 
      16   30   17 
      25   54   17 
      41   56   30 
      77   74   66 
     158  128   99 
     272  196  159 
     325  277  223 
     375  417  227 
     452  518  227 
     360  636  243 
     349  843  199 
     395 1348  235 
     540 1878  311 
     612 2315  359 
     657 2171  382 
     413 1173  246 
     175  454  102
    streptococci and staphylococci also cause deaths from other diseases,
    tabulated elsewhere. Septicaemia,meningitis,pharyngitis,tonsillitis
    bronchitis,scalded skin,arthritis,


    ICD9 had a large group 481 with 52635 deaths from "pneumococcal pneumonia"

    ICD-9-CM 481 converts approximately to:
    ?2014 ICD-10-CM J13 Pneumonia due to Streptococcus pneumoniae
    or:
    ?2014 ICD-10-CM J18.1 Lobar pneumonia, unspecified organism

    Code:
    ICD9 , 1979-1998
          480   Viral pneumonia
      134 480.0 Pneumonia due to adenovirus
      499 480.1 Pneumonia due to respiratory syncytial virus
       22 480.2 Pneumonia due to parainfluenza virus
       67 480.8 Pneumonia due to other virus not elsewhere classified
    11758 480.9 Viral pneumonia, unspecified
    52635 481   Pneumococcal pneumonia
          482   Other bacterial pneumonia
     5746 482.0 Pneumonia due to Klebsiella pneumoniae
     9191 482.1 Pneumonia due to Pseudomonas
     1690 482.2 Pneumonia due to Haemophilus influenzae [H. influenzae]
     5571 482.3 Pneumonia due to Streptococcus
          482.30 Streptococcus, unspecified
          482.31 Group A
          482.32 Group B
          482.39 Other Streptococcus
    13978 482.4 Pneumonia due to Staphylococcus
     4490 482.8 Pneumonia due to other specified bacteria
          482.81 Anaerobes
          482.82 Escherichia coli [E. coli]
          482.83 Other gram-negative bacteria
          482.89 Other specified bacteria
    20295 482.9 Bacterial pneumonia unspecified
     2391 483   Pneumonia due to other specified organism
          483.0 Mycoplasma pneumoniae
          483.8 Other specified organism
          484   Pneumonia in infectious diseases classified elsewhere
          484.0 Pneumonia in measles
          484.1 Pneumonia in cytomegalic inclusion disease
          484.2 Pneumonia in ornithosis
          484.3 Pneumonia in whooping cough
          484.4 Pneumonia in tularaemia
          484.5 Pneumonia in anthrax
          484.6 Pneumonia in aspergillosis
          484.7 Pneumonia in other systemic mycoses
          484.8 Pneumonia in other infectious diseases classified elsewhere
    148575 485   Bronchopneumonia, organism unspecified
    1116365 486   Pneumonia, organism unspecified
          487   Influenza
    12931 487.0 With pneumonia
    14424 487.1 With other respiratory manifestations
      636 487.8 With other manifestations
    Code:
    ICD10, 1999-
          J12   Viral pneumonia, not elsewhere classified
      132 J12.0 Adenoviral pneumonia
      263 J12.1 Respiratory syncytial virus pneumonia
       29 J12.2 Parainfluenza virus pneumonia
       24 J12.8 Other viral pneumonia
     2894 J12.9 Viral pneumonia, unspecified
     5328 J13   Pneumonia due to Streptococcus pneumoniae
      490 J14   Pneumonia due to Haemophilus influenzae
          J15   Bacterial pneumonia, not elsewhere classified
     1459 J15.0 Pneumonia due to Klebsiella pneumoniae
     3602 J15.1 Pneumonia due to Pseudomonas
    12696 J15.2 Pneumonia due to staphylococcus
       45 J15.3 Pneumonia due to streptococcus, group B
     3340 J15.4 Pneumonia due to other streptococci
      305 J15.5 Pneumonia due to Escherichia coli
      368 J15.6 Pneumonia due to other aerobic Gram-negative bacteria
      322 J15.7 Pneumonia due to Mycoplasma pneumoniae
      443 J15.8 Other bacterial pneumonia
    19605 J15.9 Bacterial pneumonia, unspecified
          J16   Pneumonia due to other infectious organisms, not elsewhere classified
       24 J16.0 Chlamydial pneumonia
       39 J16.8 Pneumonia due to other specified infectious organisms
          J17   Pneumonia in diseases classified elsewhere
          J17.0 Pneumonia in bacterial diseases classified elsewhere
          J17.1 Pneumonia in viral diseases classified elsewhere
          J17.2 Pneumonia in mycoses
          J17.3 Pneumonia in parasitic diseases
          J17.8 Pneumonia in other diseases classified elsewhere
          J18   Pneumonia, organism unspecified
    17197 J18.0 Bronchopneumonia, unspecified
    19242 J18.1 Lobar pneumonia, unspecified
      688 J18.2 Hypostatic pneumonia, unspecified
      428 J18.8 Other pneumonia, organism unspecified
    609982 J18.9 Pneumonia, unspecified
    Attached Files

    Leave a comment:


  • Emily
    replied
    Re: Influenza: Random Thoughts and Comments

    I've seen several reports of people being ill with pneumonia prior to getting the flu & the article below indicates there is a synergy between bacteria and the flu virus.

    Secondary Bacterial Pneumonia
    Bacterial pneumonia complicating viral influenza was reported
    during the pandemic of 1918 and multiple subsequent
    epidemic and inter-epidemic periods.22,23 Typical viral
    influenza infection is followed by near resolution of
    symptoms, subsequently complicated 4 to 14 days later by
    a recurrence of fever, dyspnea, productive cough, and pulmonary
    consolidation.28 The most common pathogens are
    Streptococcus pneumoniae, Staphylococcus aureus, Haemophilus
    influenzae, and occasionally other gram-negative
    bacilli.
    29
    S. aureus pneumonia following influenza was first described
    during the 1918 pandemic.
    Striking features included
    a fulminant course, unusual cyanosis (?cherry-red
    indigo-blue?), lack of consolidation on pulmonary examination,
    dirty salmon-pink purulent sputum, leucopenia, multiple
    micro-abscesses on autopsy, and a near-universal fatality.
    30 Subsequent reports confirmed an increased incidence
    of S. aureus pneumonia during the epidemic of 1968 to
    1969
    .29 Staphylococcal toxic shock syndrome arising from
    the respiratory tract during influenza infection also has been
    described.31 During the 2003 to 2004 and 2006 to 2007
    influenza seasons, cases of severe community-acquired
    pneumonia due to methicillin-resistant S. aureus (MRSA)
    were reported with 33% mortality.32,33
    The mechanisms by which bacteria act synergistically
    with influenza virus include increased binding and invasion
    of bacteria, increased viral replication, and modification of
    the host inflammatory response. The interactions between
    influenza virus and bacteria have most thoroughly been
    established with streptococcus pneumoniae. As the viral
    neuraminidase cleaves sialic acid to release new viral particles
    from host cells, damage to the epithelial layer of the
    airways occurs, exposing binding sites necessary for adherence
    of the pneumococcus.34
    Pulmonary Complications with Unusual
    Pathogens

    Multiple reports describe secondary pneumonia caused by
    less common microorganisms. These include Aspergillus
    sp., Chlamydia pneumoniae, B-hemolytic streptococci, and
    Legionella pneumophila.35-38 Six cases of invasive aspergillosis
    have been reported, all in immunocompetent persons,
    with 5 deaths.

    Noninfectious mimics of infection that may be incited by
    influenza include..
    The American Journal of Medicine (2008) 121, 258-264

    Leave a comment:


  • mixin
    replied
    Re: Influenza: Random Thoughts and Comments

    Gs and I have been having a rather long, rambling conversation about the pneumonia vaccine; I was wondering if that is giving the protection against death for those under the age of 24 and 65+. I've done quite a bit of searching and cannot find the number of years the childhood vax is good for. Since it's recommended that adults with underlying health conditions get vaxed, I'm assuming the protection is limited to X number of years.

    We wondered if H1N1 opens the door for Pneumococcal infection (refers to an infection caused by Streptococcus pneumoniae), which is mostly covered by the pneumonia vax; and H3 somehow opens the door to those which aren't covered.

    Gs also questions why we don't have pneumonia vax for those bacterial strains which are becoming antibiotic resistant. I've read that as one strain of bacteria is covered by the vax, others take its place.

    I was curious about the causes of pneumonia deaths so gs went through the records and gave me this for 2010. I re-formatted it a bit; if anyone wants to see the codes, etc, I can post them. I also question what "unspecified" means; did they not test to see or did they just omit that info from the death certificate? The number of unspecified cases is quite large.

    Code:
    numbers of deaths, causes:
      227: Influenza due to identified avian influenza virus
       30: Influenza with pneumonia, influenza virus identified
       27: Influenza with other respiratory manifestations, influenza virus identified
        3: Influenza with other manifestations, influenza virus identified
      112: Influenza with pneumonia, virus not identified
       92: Influenza with other respiratory manifestations, virus not identified
       10: Influenza with other manifestations, virus not identified
       14: Adenoviral pneumonia
       
       18: J121 (I'm not sure what this little group is)
        3: J122
        3: J128
      133: J129
    
    43864: Pneumonia, [B]unspecified[/B]
     1775: Lobar pneumonia, unspecified
      955: Bronchopneumonia, unspecified
    
      625: Pneumonia due to staphylococcus
      
      277: Pneumonia due to Streptococcus pneumoniae
        2: Pneumonia due to streptococcus, group B 
      189: Pneumonia due to other streptococci
     
       31: Pneumonia due to Haemophilus influenzae 
       88: Pneumonia due to Klebsiella pneumoniae
      231: Pneumonia due to Pseudomonas
    
       25: Pneumonia due to Escherichia coli
       24: Pneumonia due to other aerobic Gram-negative bacteria
       24: Pneumonia due to Mycoplasma pneumoniae
       39: Other bacterial pneumonia
     1264: Bacterial pneumonia, unspecified
    
       64: Hypostatic pneumonia, unspecified
       12: Other pneumonia, organism unspecified
    In the United States, the most common viral causes of pneumonia are influenza and respiratory syncytial virus (RSV), and the most common bacterial cause is Streptococcus pneumoniae (pneumococcus). In children younger than 1 year of age, RSV is the most common cause of pneumonia.


    Prevnar 13? is a vaccine approved for children 6 weeks through 17 years of age for the prevention of invasive disease caused by 13 Streptococcus pneumoniae strains (1, 3, 4, 5, 6A, 6B, 7F, 9V, 14, 18C, 19A, 19F, and 23F), and for children 6 weeks through 5 years for the prevention of otitis media caused by 7 of the 13 strains (4, 6B, 9V, 14, 18C, 19F, and 23F)
    Learn about IPD and how PREVNAR 13® (Pneumococcal 13-valent Conjugate Vaccine [Diphtheria CRM197 Protein]) may help protect your baby. See risks and benefits.

    Leave a comment:


  • Emily
    replied
    Re: Influenza: Random Thoughts and Comments

    I'm sorry to hear that you're impacted by bad air quality, mixin. You aren't alone. I was really sick for about 3 weeks over the holidays & it all started with an exposure to something that smelled really toxic while out driving. It smelled like someone was burning creosote treated wood. While recovering from that, we got some sort of upper respiratory illness and someone in the local neighborhood was generating HUGE amounts of smoke at night during this time, likely from banking the stove at night, or burning unseasoned wood. (Couldn't figure out who it even was.) So I kept going downhill. I was really disappointed that the natural remedies I started since 2009 and measures I've taken to reduce smoke exposure didn't prevent this illness. The smoke was so intense this year that it overwhelmed my HEPA's and heavy-duty charcoal/potassium permanganate filter, (all freshly replace this year, too).
    Even if someone doesn't have a classical allergy to smoke, they can be killed or sickened by reactions to it. I think overexposure causes immune dysregulation, and I've seen research that supports that. What is happening is more of an autoimmune reaction, and it is hard to treat.

    I'm not sure of what the mechanism is with the problems that children are having here in the Puget Sound region, but it is really sad:
    http://www.npr.org/templates/story/s...ryId=143842355
    Where There's Smoke, There's Sickness: Wood Smoke now a major Northwest air polluter

    by Robert McClure, InvestigateWest and Katie Campbell, EarthFix/KCTS 9
    December 16, 201112:26 PM
    ...
    David Ricker is a lung doctor who treats children at the Mary Bridge Children's Hospital in Tacoma, where the most common diagnosis of kids admitted is bronchialitis, constriction of the small lung airways that leaves children wheezing and in need of oxygen in the hospital for several days. Ricker says that his caseload goes up in the fall and winter, and he's sure wood smoke contributes.

    On a recent day Ricker treated a two-year-old boy who had been brought into the emergency room coughing and wheezing so hard that the skin at the bottom of his throat and on his ribcage was sucked in on each breath. A tube attached to a breathing machine had to be put down his windpipe. The same boy had been to Mary Bridge in the same condition multiple times.
    We can save the lives of children sickened by smoke exposure here, but the suffering is hidden from public view. In a refugee camp, however, nothing can be hidden. Someone from Syria posted a very disturbing photo of a little child killed by wood smoke in recently:

    https://twitter.com/RevolutionSyria/...208192/photo/1
    Suffered cold, hunger & bombing; then suffocated by the smoke of wood-burning stove

    Leave a comment:


  • mixin
    replied
    Re: Influenza: Random Thoughts and Comments

    Emily,
    I did not see that staph vax news; that's great!

    This is from your Berkeley report, in case we ever want it for comparisons

    For example, because of wood availabilities, Finland, Sweden, and Canada burn more biomass fuel per capita than other countries and South Korea and Singapore burn less [2].
    On a personal level, I'm very allergic to smoke; too much will send me to the doctor. Unfortunately, I have a neighbor who burns everything he possibly can plus he has a wood stove. The wind blows it all in my direction. I'm not associated with air purifier companies in any way; but the one I have works well.

    Leave a comment:


  • mixin
    replied
    Re: Influenza: Random Thoughts and Comments

    The reason I asked about pneumonia vax studies was because flu seems to either strike the young/old or middle-aged groups. Currently, it seems that the very young and elderly are doing better than the other age groups. I wondered why.

    I also was not sure how long a pneumonia vax is good for. The John Hopkins paper looks at the re-vax controversy.

    I did some research on the pneumonia vax and found this good report (24 pages) by the Lung Association:
    Missed Opportunities
    Disparities in Lung Health Series
    Influenza and Pneumonia Vaccination in Older Adults



    2009 stats show vax rates for the following groups:
    white: 60%, black 38%, Hispanic: 32%, Asian: 38%, Native American: 50%

    While the exact number of people who get pneumonia every year is unknown, health records show that in 2006 over 1.2 million people were discharged from the hospital after being treated for pneumonia. Pneumonia can be viral, bacterial or fungal in origin. Pneumococcal pneumonia, which is the type that is most common among older adults, kills more people in the United States each year than any other vaccine-preventable bacterial disease, with an estimated 40,000 deaths annually.
    This Johns Hopkins paper estimates a single Pneumovax shot is likely to have 75% or more efficacy (serologically) in healthy adults > 65 years of age.

    Pneumococcal Vaccine: Vaccinate! Revaccinate??

    Leave a comment:


  • gsgs
    replied
    Re: Influenza: Random Thoughts and Comments

    when you talk about flu-deaths, then the big thing is
    still cardiovascular and the elderly and H3N2 (in USA).
    And diabetes and Alzheimer and Parkinson and Senility
    and Septicaemia and COPD ...
    All caused by flu.

    And I don't think that preventing pneumonia helps a lot here.
    You can argue that the younger deaths are more important
    and they more often die from pneumonia but it's much rarer.

    People die from pneumonia also in summer, just maybe ~20%-30%
    more in winter, but reducing pneumonia deaths is important
    independent of flu.

    Seasonal flu, that is. When we consider possible,bad new flus,
    (or old flus like 1918) then ... who knows (give your probability
    estimates )

    Leave a comment:


  • Emily
    replied
    Re: Influenza: Random Thoughts and Comments

    Did you see the news about this staph vaccine in the works?

    University of Iowa researchers say new staph infection vaccine could bring the flu death rate down to near zero

    It's possible that's an overly optimistic projection, but a lot of the reports of deaths following flu seem to be from a complication related to what is described as a bacteria commonly carried by the victim.

    There's some discussion here about a study indicating that wood smoke at common exposure levels can enhance staph infections.

    Adverse effects of wood smoke PM2.5 exposure on macrophage functions (Even while classic markers of inflammation (cellular infiltration, total protein, neutrophils) were not affected)

    Leave a comment:


  • gsgs
    replied
    Re: Influenza: Random Thoughts and Comments

    This meta-analysis provides evidence supporting the recommendation for PPV to prevent IPD in adults. The evidence from RCTs is less clear with respect to adults with chronic illness. This might be because of lack of effect or lack of power in the studies. The meta-analysis does not provide evidence …


    n=64852
    pneumococcal polysaccharide vaccines efficacy for

    invasive pneumococcal disease OR=0.26
    all-cause pneumonia in low-income countries OR 0.54
    all-cause pneumonia in high-income countries OR 0.71
    all-cause mortality OR 0.90

    poorer in adults with illness

    ------------------------------------------------
    my interpretation:
    it reduces your chances to die from pneumonia by ~30%
    within some reasonable time span, my guess : ~5 years
    since that's the time when a repitition is recommended.

    Now, this includes studies from 1966-2012 and they increased
    the number of strains in the vaccine and it is well efficient against
    the included strains (74%), so I assume the current efficiency
    with the pneumovax 23 to prevent death is higher than 30% ,
    maybe 50% (wild guess)
    what's its chance to prevent you from death in a severe H5N1 or H7N9
    pandemic ?
    would antibiotics be available, have you prepped antibiotics, would the strain
    be resistent (were you in hospital in the last years)
    can I test whether I have MRSA or ORSA or such ?

    Leave a comment:


  • gsgs
    replied
    Re: Influenza: Random Thoughts and Comments

    estimates from 32 European countries for monthly deaths
    in the first half of 2013 are now available at eurostats.
    (Italy was included, only June 2013 was missing, which I estimated from
    previous years. France was excluded although they had 2013, but
    4 months from 2012 were missing)


    Wrt. ILI 2011/12 was very mild and 2012/13 was severe.
    But the death-numbers seem to paint a different picture.
    I don't know why.




    rechts oben English
    database by themes
    population and social conditions
    population
    demography
    national data
    mortality
    deaths by month

    dec 2013 : I,E,D Dec.2012
    charts for all 62 cuntries at FT


    eu62s.gif
    eu62t.gif
    mmw13u.gif

    Leave a comment:

Working...
X