Hello,
For tree lovers, here is some interesting tree I produce with the BioEdit-Tree view interface.
To be valid, a tree must:
- be produce with a fully aligned set of sequences;
- sequences must be cut to the same lenght (if it is not, the tree will only classify the sequence by the lenght of the fragment);
- tree must be "rooted" with the oldest or the most different strain;
Also:
- some trees do not represent genetic distance;
- some do;
- remove all () because the device will "bug"
________________
Use the "DNAdist Neigbor phylo tree" with a DNA/RNA alignement to compare genetic distance;
Use the "ProtDist Neigbor phylo tree" with a protein alignement to compare the virus antigenicity;
Have fun
Will follow some examples
For tree lovers, here is some interesting tree I produce with the BioEdit-Tree view interface.
To be valid, a tree must:
- be produce with a fully aligned set of sequences;
- sequences must be cut to the same lenght (if it is not, the tree will only classify the sequence by the lenght of the fragment);
- tree must be "rooted" with the oldest or the most different strain;
Also:
- some trees do not represent genetic distance;
- some do;
- remove all () because the device will "bug"
________________
Use the "DNAdist Neigbor phylo tree" with a DNA/RNA alignement to compare genetic distance;
Use the "ProtDist Neigbor phylo tree" with a protein alignement to compare the virus antigenicity;
Have fun
Will follow some examples
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