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Mutations increase as infections increase but also less fit mutations go extinct over time. I forget if there is some equation that describes this. -
mutation picture , USA,2018/19 : the main strain of 1460 genomes (out of 2552 H3N2) : http://magictour.free.fr/2019-us2.GIF
(28 mutations per year , 13000 nucleotides , 24% nonsyn.
compare with SARS2 : http://magictour.free.fr/s2uk6-r2.GIF
(20 mutations per year 30000 nucleotides , 55% nonsyn , 32% in ORF1a , 80% in spike)
the main viruses in the infection-chain since 1972 : http://magictour.free.fr/i_h3n2e.GIF
Leave a comment:
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Re: H3n2
WHO vaccine clades, 2014
NZ-overview with phylotrees etc.
https://surv.esr.cri.nz/PDF_surveill...FluVac2015.pdf
(32g12f1.c2,10-37) = Egypt/Iowa+Q49R,S61N,T64I,N161S,A214S,V239I,N294K,N328S
vaccine=Tx50 : (32..)+T144N,G202V,S214P,S235F
[Switz...] = 3C.3a : (32..)+T144A,A154S,R158G,F175S,N241D,K342R
substract 16 to get WHO-locations
Code:000000000000000000000000000000000000000000000000000000 000000000000000111111111111111222222222222223333333555 011123446666777013445566777788000123344557990224467002 468944791469348808044801345679258485916287468782337351 ------------------------------------------------------ IAKLNHNQSTEDQIEKYNSTARNNLNFKNQGKIAASVNIIIRNEKQNKQVRDDV >2007/02/06,14278,AUS,A/Brisbane/10/07 .T.......................K...K.N..T...............I... >Index/USA-2007 .........................K...K.N..T...............I... >Index/Brisbane-like/2007 .........................K...K.NV.T...............I... >Index/32g12f1.c2,55-62 ..E.D..R...N....H.................T...V....A.......... >Index/H3N3-2011-reassortedEI/2011(H3N2) ...........N....H.....................V....A.......... >Index/2009/Egypt-Iowa+NA,2009// ...................................................... >Index/2009/Egypt/Iowa ...................................................... >Index/H3N2-2011-normalEI/2011(H3N2) .........A..H..R..............................S..M.... >A/Czech Republic/121/2012,2012/03/06,Czech Republic .......RNIK.......N.........D....S..I.....K...S....... >Index/32g12f1.c2,38-41 .......RNI........N....S.........S..I.....K.R.S....... >Index/32g12f1.c2,10-37 .......RNI.............S.........S..I.....K...S....... >KM064114,A/Texas/17/2014,2014/05/05,USA,H3N2,Human,4 .....Y.RNI.........A.G.S.........S..I.....K...S..K.... >KM852940,A/Utah/09/2014,2014/05/07,USA,H3N2,Human,4 .......RNI.........A.G.S.........S..I...M.K...S.EK.... >KM852915,A/Kansas/06/2014,2014/05/05,USA,H3N2,Human,4 ......DRNI.......D.A.G.SS.......TS..I.....K...S..M.... >KM852967,A/Minnesota/14/2014,2014/07/10,USA,H3N2,Human,4 .......RNI.........ASG.S..-......S..ID.V..K...SR...... >KM853009,A/New Mexico/16/2014,2014/05/15,USA,H3N2,Human,4 .......RNI..-......ASG.S..S......S..ID.V..K...SR.....I >KM852961,A/Alaska/29/2014,2014/07/18,USA,H3N2,Human,4 T......RNI.........DSG.S..S......S..ID....K...SR...... >KM852972,A/Nevada/11/2014,2014/05/28,USA,H3N2,Human,4 .......RNI...V.....ASG.S..S......S..ID....K...SR...... >KM852975,A/Alaska/27/2014,2014/05/13,USA,H3N2,Human,4 .......RNI.........ASG.S..S......S..ID....K...SR...... >KM852977,A/Alaska/26/2014,2014/05/22,USA,H3N2,Human,4 .......RNI.........ASG.S..S......S..ID....K...SR...... >KM852971,A/Wisconsin/11/2014,2014/05/22,USA,H3N2,Human,4 ...I...RNI......H..ASG.S..S......S..ID....K...S....... >KM852976,A/Iowa/09/2014,2014/05/23,USA,H3N2,Human,4 ...I...RNI...........GSS.-Y-.....S..ID....K..HS.....N. >KM852877,A/Alaska/34/2014,2014/07/05,USA,H3N2,Human,4 ...I...RNI............SS..YT.....S..ID....K..HS.....N. >KM853006,A/Iowa/08/2014,2014/05/08,USA,H3N2,Human,4 ...I...RNI......H.....SS..YT.....S..ID....K..HS.....N. >KM852959,A/Washington/12/2014,2014/05/02,USA,H3N2,Human,4 ...I...RNI............SS..YT.....S..ID....K..HS.....N. >KM852880,A/Texas/36/2014,2014/06/13,USA,H3N2,Human,4 ...I...RNI............SS..YT.....S..ID....K..HS.....N. >KM852939,A/Iowa/07/2014,2014/05/05,USA,H3N2,Human,4 ...I...RNI............SS..YT.....S..ID..M.K..HS.....N. >KM853004,A/Wisconsin/14/2014,2014/06/29,USA,H3N2,Human,4 ...I...RNI............SS..YT.....S..ID....K..HS.....N. >KM853010,A/Washington/13/2014,2014/05/07,USA,H3N2,Human,4 ...I...RNI............SS..YT.....S..ID....K..HS.....N. >KM853007,A/Utah/08/2014,2014/05/01,USA,H3N2,Human,4 ...I...RNI.N..........SS...T.....S..ID....K..HS.....N. >KM852892,A/Utah/10/2014,2014/05/27,USA,H3N2,Human,4 ...I...RNI.N..........SS.........S..ID....K..HS.....N. >Index/32g12f1.c2,42-53 ......................DS..........S.I....Q.........N.. >Index/Perth-like/2009 ..............K.......K...........T................... >A/Texas/50/2012,2012//,USA,H3N2,Human .......RNI.........N..........V..P.FI.....K...S....... 000000000000000000000000000000000000000000000000000000 000000000000000111111111111111222222222222223333333555 011123446666777013445566777788000123344557990224467002 468944791469348808044801345679258485916287468782337351 ------------------------------------------------------ IAKLNHNQSTEDQIEKYNSTARNNLNFKNQGKIAASVNIIIRNEKQNKQVRDDVLeave a comment:
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Re: H3n2
new H3N2 genomes from 2012/3=2012f at genbank
i.e. from Boston, Santa Clara
391 genomes now
some of the Helsinki sequences were removed, see here:
http://www.flutrackers.com/forum/sho...d.php?t=218064
here the codes for those who google for it
(google last cached this thread on 2014/03/31 )
-----------------------------------Code:AB796432 AB796433 CY130183 CY130191 CY130192 CY130193 CY130194 CY130195 CY130196 CY130197 CY130198 CY130199 CY130200 CY131965 CY131966 CY131967 CY134459 CY134460 CY134461 CY134462 CY134463 CY134464 CY134635 CY134636 CY134637 CY134638 CY134639 CY134640 CY134641 CY134642 CY134643 CY134644 CY134645 CY134646 CY134647 CY134648 CY134649 CY134650 CY134651 CY134652 CY134653 CY134654 CY134655 CY134656 CY134657 CY134658 CY134659 CY134660 CY134661 CY134662 CY134663 CY134664 CY134665 CY134666 CY134667 CY134668 CY134669 CY134670 CY134671 CY134672 CY134673 CY134674 CY134675 CY134676 CY134677 CY134678 CY134679 CY134680 CY134681 CY134682 CY134683 CY134684 CY134685 CY134686 CY134687 CY134688 CY134689 CY134690 CY134691 CY134692 CY134693 CY134694 CY134695 CY134696 CY134697 CY134698 CY134699 CY134700 CY134701 CY134702 CY134703 CY134704 CY134705 CY134706 CY134707 CY134708 CY134709 CY134710 CY134711 CY134712 CY134713 CY134714 CY134715 CY134716 CY134717 CY134718 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xw01.gif : 2200 H3N2 genomes from the 2007ff-strain
genbank as of Aug.2014Leave a comment:
-
Re: H3n2
cause for concern ? I don't know. You'd have to compare it with the epidemiology in India
in May-July. Checking reassortments could be more important, here we only have segments 4,6,7
so far I checked 4,6 but I separated the genomes because that was easier.
I'm just tracking these to see from where to where it goes.
The American sequences are from winter 2012/2013 , the India sequences are from mid 2013
we'll have to wait for 2013/4 sequences to see whether the India mutations come to
Europe or even USA. USA had H3 last season, they may get mainly H1 this coming season
and some B later in March.
USA is doing this worldwide airplane collecting, "AF" (airforce) - sequences , HA only.
So maybe we'll know soon about the India mutations.
percent B since 1957 was:
50s:00,75,03,
60s:31,95,00,05,30,60,50,05,15,10
70s:05,01,04,76,00,02,70,01,03,98
80s:00,74,11,45,03,76,01,17,43,00
90s:86,01,71,01,26,15,22,01,23,01
00s:47,14,44,01,25,19,21,29,38,00
10s:26,18,22
-----------------------------------------------------------
India had : T144A,R158G,(L173S),V363K
amino-acid mutations in H3N2-HA since 1968:
Code:0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000 0000000000000000000000000011111111111111111111111111111111122222222222222222222222222222222222333333333334444444555555 0011111122244466667777999900112233344445555556667777777888800000011111122223344444566677789999001224679990066669000245 7914568924617914690389148948072337802791346890121234569078924568923458934898912356802467891246185387371340216895369267 ---------------------------------------------------------------------------------------------------------------------- LYFALGDLNNTLDQSTKNNRIDHVETVKFDASTITGTTNGNAKGPGSGTKSGSTVLNDNSNQETSVQASVTRRTIWVGLSRIVVNNMRTPDTIENKKKNLITDINVENKRREDVDEVR >1968//,182,CHN,A/Beijing/1/68 ...................................................................................................................... >1972//,1643,RUS,A/Udorn/307/72 ...V...F....N..........G..........S..........D..Y...........D..........K..........I.......G....................G.....K >1979//,4199,THA,A/Bangkok/01/79 ...VFAN.....N...RDS.KN.G.K........N.N.S.Y...SDNSYE.E.K...G..DK..K.R....K........G.IL..I...G.S......IV..........G.....K >1983//,5660,HKG,A/HK/14/83 ...VFAK.....N...RDS.KN.G.K........N.N.S.Y...SVNSYE.E.K...GKIDK..N.R....K..V.......IL.TI...G.S....R.IV....L....KG.....K >1989//,7852,CHN,A/Beijing/353/89 ..LVFAK.....N...RDS.KN.GKE..Y.....NDNASEY...SVKSHE.EYKA..GK.DR..N.R....K..V.......IL.TI...G.S...RR.IV....L....KG.....K >1997/11/29,10924,USA,A/NY/503/97 ..SVFAK.....N...RDS.EN.GKE..Y....NNSNA.TY..RSIKSHQLKYKA...K.DSD..A.....K..V...V...IL.TI.S.GKN.D.RR.IV.N..L..R.KG.....K >2003/04/23,12897,USA,A/NY/214/03 ..LVFAK....IN...GDSQENQGKK..Y....NNSN..TS..RSNKS.HLKYKA..EKGDSDI.A...I.K..VR.DV...IL.TI.S.GKN...RR.IV.N..LG.RKKG....AK >A/Wisconsin/67/2005/08/ ..LVFAK....IN...GDSQENQGKK..Y....NDSN..TSS.RSNNS.QLKFKA..EKVDNDIFA...I.K..VRINIP..IL.TI.S.GKN...RR.IVIN..LG.RKKG....AK >2007/02/06,14278,AUS,A/Brisbane/10/07 ..LVFTK....IN...EDSQENQGKK..Y....NNSN..TS.IRSNNS.HLKFKA..EKGDNDIFA...I.K..VR.NIP..IL.TI.S.GKN...RR.IVI...LG..KKG....AK >Index/Brisbane-like/2007 ..LVFAK....IN...EDSQENQGKK..Y....NNSN..TS.IRSNNS.HLKFKA..EKGDNDVFA...I.K..VR.NIP..IL.TI.S.GKN...RR.IVI...LG..KKG....AK >Index/Perth-like/2009 ..LVFAK....IN...EDSQKNQGKK..Y....NNSN..TS.IRSKNS.HLNFKA..EQGDKDIFA...I.K..VR.NIP..IL.TI.S.GKN...RR.IVR...LG..KKG....AK >Index/2009/Egypt/Iowa ..LVFAK....IN...EDSQENQGKK..Y....NNSN..TS.IRSNNS.HLNFKA..EQGDKDIFA...I.K.AVR.NIP..IL.TI.S.GKN...RR.IVR...LG..KKG....AK >Index/USA-2007 ..LVFAK....IN...EDSQENQGKK..Y....NNSN..TS.IRSNNS.HLKFKA..EKGDNDIFA...I.K..VR.NIP..IL.TI.S.GKN...RR.IVI...LG..KKG....AK >A/swine/Ontario/33853/2005(H3N2) FCLIFAK.S.M.....R.SQKN.DKE.TYY...TQSNADSY.RESVNSHNLDYKA...KGDRD.N......K..V...V.I.IL.TIQS.GNN...RR.IV.N.T.K.R.KG...Q.K >A/Sw/Index/triple-reassortant/1998(H3N2) ..LVFAK.....N...RDS.KN.GKEI.Y.S..TNDNAD.YS.ESVKSH.LEYKA...K.DS......I..KS.V...I...ILSTI.N..NY...R.KIV..V.L....KG.....K >A/Index/1968(H3N2) ...................................................................................................................... >A/Index_Fujian/2002(H3N2) ..LVFAK....IN...GDSQENQGKK..Y....NNSN..TS..RSNKS.QLKYKA..EKGDSDI.A...I.K..VR.DV...IL.TI.S.GKN...RR.IV.N..LG.RKKG....AK >A/Index_Fujian/USA/2003(H3N2) ..LVFAK....IN...GDSQENQGKK..Y....NNSN..TS..RSNKS.HLKYKA..EKGDSDI.A...I.K..VR.DV...IL.TI.S.GKN...RR.IV.N..LG.RKK.....AK >A/Index_Fujian_reass./2003/06(H3N2) ..LVFAK....IN...GDSQENQGKK..Y....NNSD..TS..RSNKS.HLKYKA..EKGDSDI.A...I.K..VR.DV...IL.TI.S.GKN...RR.IV.N..LG.RKKG....AK >A/Index/32v/2011(H3N2) FCLIFAK.S.M.....R.SQKN.DKE.TYY.TNTQSNADSY.R.SVNSYNLNYKEQ..KGDKD.N.....IK..V...V.I.IL.TIQSH.EN....R.IV.N.T.KSR..G.INQ.K >Index/H3N3-2011-reassortedEI/2011(H3N2) ..LVFAK....IN...E.SQENQGKK..H....NNSN..TS.IRSNNS.HLNFKA..EQGDKDIFA...I.K.AVR.NIP.VIL.TI.S.GKNA..RR.IVR...LG..KKG....AK >Index/H3N2-2011-normalEI/2011(H3N2) ..LVFAK....IN..AEDSHENQGKK.RY....NNSN..TS.IRSNNS.HLNFKA..EQGDKDIFA...I.K.AVR.NIP..IL.TI.S.GKN...RRSIMR...LG..KKG....AK >Index/2009/Egypt-Iowa+NA,2009// ..LVFAK....IN...EDSQENQGKK..Y....NNSN..TS.IRSNNS.HLNFKA..EQGDKDIFA...I.K.AVR.NIP..IL.TI.S.GKN...RR.IVR...LG..KKG....AK >A/Czech Republic/121/2012,2012/03/06,Czech Republic ..LVFAK....INRNI.DSQENQGKK..Y....NNNN..TS.IRSNNS.HLNFKA.DEQGDKDIFA.S.I.K.AVRINIP..IL.TI.S.GKK...RRSIVR...LG..KKG....AK >Index/32g12f1.c2,10-37 ..LVFAK....INRNIEDSQENQGKK..Y....NNSN..TS.IRSN.S.HLNFKA..EQGDKDIFA.S.I.K.AVRINIP..IL.TI.S.GKK...RRSIVR...LG..KKG....AK >Index/32g12f1.c2,38-41 ..LVFAK....INRNIEDSQENQGKK..Y....NNNN..TS.IRSN.S.HLNFKA..EQGDKDIFA.S.I.K.AVRINIP..IL.TI.S.GKK..RRRSIVR...LG..KKG....AK >Index/32g12f1.c2,42-53 ..LVFAK....IN...EDSQENQGKK..Y....NNSN..TS.IRSD.S.HLNFKA..EQGDKDIFA...I.K.SVRINIP..IL.TIQS.GKN...RR.IVR...LG..KKGN...AK >Index/32g12f1.c2,55-62 ..LVFAE..D.INR..E.SQENQGKK..H....NNSN..TS.IRSNNS.HLNFKA..EQGDKDIFA...I.K..VR.NIP.VIL.TI.S.GKNA..RR.IVR...LG..KKG....AK 0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000 0000000000000000000000000011111111111111111111111111111111122222222222222222222222222222222222333333333334444444555555 0011111122244466667777999900112233344445555556667777777888800000011111122223344444566677789999001224679990066669000245 7914568924617914690389148948072337802791346890121234569078924568923458934898912356802467891246185387371340216895369267 ---------------------------------------------------------------------------------------------------------------------- LYFALGDLNNTLDQSTKNNRIDHVETVKFDASTITGTTNGNAKGPGSGTKSGSTVLNDNSNQETSVQASVTRRTIWVGLSRIVVNNMRTPDTIENKKKNLITDINVENKRREDVDEVR
antigenic sites:
Cb 78-83 = 92-97 = SWSYIV
Sa 128-129 = 142-143
156-160 = 157-159 or 171-173 = KKGNS > 511-513 aaa 514-516 gga 517-519 aat
162-167= 176-181
Sb 187-198=
Ca1 169-173= 206-208= 238-240=
Ca2 140-145= 224-226=
India had : T144A,R158G,(L173S),V363K
so R158G and L173S mutated back to what we had before ~1990
T144A is new
(I'm not sure about the numbering - since this is H3, others should have the same numbers ?!)
human H3N2-HA that we have so far since May,2013 :
(plus the semi-secret = "publicly-available" sequences at GISAID)Code:00000000000000 00011111222335 46645667139260 91448123494835 -------------- QSTTRNSLAVNNVD >Index/2009/Egypt/Iowa .............. >AGY41834,A/India/LKO3818/2013,2013/06/25,India,H3N2,Human,4 ---AGS..SIKS-- >AGY41835,A/India/LKO3824/2013,2013/06/26,India,H3N2,Human,4 ---AGS.SSIKS-- >AGY41836,A/India/LKO3825/2013,2013/06/26,India,H3N2,Human,4 ---AGS.SSIKS-- >AGY41837,A/India/LKO3839/2013,2013/06/29,India,H3N2,Human,4 ---AGS.SSIKS-- >AGY41838,A/India/LKO3863/2013,2013/07/06,India,H3N2,Human,4 ----GS..SIKS-- >AGY41839,A/India/LKO3876/2013,2013/07/09,India,H3N2,Human,4 ---AGSGSSIKS-- >AGY41840,A/India/LKO3887/2013,2013/07/10,India,H3N2,Human,4 ----GS..SIKSK- >AGY41841,A/India/LKO3889/2013,2013/07/11,India,H3N2,Human,4 ---AGS.SSIKS-- >AGY41842,A/India/LKO3893/2013,2013/07/12,India,H3N2,Human,4 ---AGS..SIKS-- >AGY41843,A/India/LKO3906/2013,2013/07/15,India,H3N2,Human,4 ----GS.SSIKSK- >AGY41844,A/India/LKO3913/2013,2013/07/16,India,H3N2,Human,4 ---AGS..SIKSK- >AGY41845,A/India/LKO3914/2013,2013/07/16,India,H3N2,Human,4 ---AGS..SIKSK- >AGU01874,A/Taiwan/80710/2013,2013/05/10,Taiwan,H3N2,Human,4 RNI..S..SIKS.N >AGU01876,A/Taiwan/80720/2013,2013/05/13,Taiwan,H3N2,Human,4 RNI..S..SIKS.N >AGU01875,A/Taiwan/80723/2013,2013/05/14,Taiwan,H3N2,Human,4 RNI..S.SSIKS.N 00000000000000 00011111222335 46645667139260 91448123494835 -------------- QSTTRNSLAVNNVDLeave a comment:
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Re: H3n2
Are the Indian mutations cause for concern?
Do the US sequences share the mutations that the Indian sequences have?Leave a comment:
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Re: H3n2
2013/11/07
H3N2 from USA, season 2012/3 , from all states, mainly segments 4,6,7
Code:17,Alabama/ 58,Alaska/ 9,Arizona/ 18,Arkansas 42,Californ 21,Colorado 6,Connecti 30,Delaware 9,District 30,Florida/ 15,Georgia/ 36,Hawaii/ 21,Idaho/ 6,Illinois 12,Indiana/ 18,Iowa/ 18,Kansas/ 18,Kentucky 18,Louisian 12,Maine/ 27,Maryland 27,Massachu 28,Michigan 15,Minnesot 12,Mississi 15,Missouri 15,Montana/ 18,Nebraska 24,Nevada/ 18,New Hamp 15,New Jers 27,New Mexi 42,New York 21,North Ca 15,North Da 15,Ohio/ 21,Oklahoma 15,Oregon/ 18,Pennsylv 12,Rhode Is 12,South Ca 21,South Da 9,Tennesse 39,Texas/ 12,Utah/ 15,Vermont/ 18,Virginia 32,Washingt 18,West Vir 21,Wisconsi 12,Wyoming/
Code:0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000011111111111111111111111111111111111111111111111111111111111111111111111111111 0000000000000000000001111111111111112222222222222233333333334444444444444444455555555555556666666666666677777777777777788888888888999999999999900000000000111111111111122222222223333333333334444444444455555555555666666666 0122233334445557778990334445667888990011223477888901124556990111233456677789900111234466990001223448889900011122336668812333477889013456777889900111345888011123566799901345567892234456667891123445789900112455677112356778 9812836793582570284368594676251027155609287069125130685784035389005760823822814689870314163596399032790345904516262584569037303271359446258383459147276037103551867314508654795160384732351923687398451479384547958344732013 -codon-position--------------------------------------------- 11 1 1 11 1 1 2 212 12 2 111 11 212 1 1 1212 2 2 2 122 111 2 2 12 11 1 12 122 2 2 21 1 1 1 2 2 1 1 1 1 1 2 12 2 ---Index----------------------------------------------------TTGAAATCGTCTACTACGGTGACACAATTTGGGTCTGATGCTCCTTGCCTCGCTTGGGACGAAGCAACCGAAGAATAGTCTAAAGCTAGAGGGGTTAGTGATCGCTCCAGACCAAGAAATCGGGCTCTACTCAGCCTTGACATACATATCGGAGCGTAGATCATGTAGGACCAGTATCGCGCTTCACGTGGGCTCCGACAGCGAAGCGGAGTATCCCAAG 1 >Index/2009/Egypt/Iowa ............................................................................................................................................................................................................................ 0 0 , 0 0 1:>Index/2009/Egypt/Iowa 2 >KF790169,A/Oklahoma/04/2012(H3N2) ..........T..........G..............A..T.........C...C....C.A........T........................A...G...T......AG..G.A............C...............A.....T....A..............T...........C....................G.A.............. 30 24 , 30 24 2:>KF790169,A/Oklahoma/04/2012(H3N2) 3 >KF790050,A/Florida/68/2012(H3N2) .....................G..............A............C...CC..................................T........G...T..........G..............C...............A.....T........G......................C...T................G.A.............. 18 17 , 18 17 3:>KF790050,A/Florida/68/2012(H3N2) 4 >KF789819,A/Virginia/16/2012(H3N2) .....................G..............A....C.......C...CC.................................AT........G...T..C..G....G..............C.C.............A.....T...T....G......................C...T...............TG.A.....C........ 25 25 , 25 25 4:>KF789819,A/Virginia/16/2012(H3N2) 5 >KF789670,A/Virginia/15/2012(H3N2) .....................G..............A....C.......C...CC.................................A.........G...T..C..G....G..............C.C.............A.....T...T....G......................C...T...............TG.A.....C........ 24 24 , 24 24 5:>KF789670,A/Virginia/15/2012(H3N2) 6 >KF789706,A/Tennessee/18/2012(H3N2) .....................G..............A....C.......C...CC.................................A.........G...T..C..G....G..............C.C.............A.....T...T....G......................C...T...............TG.A.....C........ 25 24 , 25 24 6:>KF789706,A/Tennessee/18/2012(H3N2) 7 >KF789804,A/Virginia/16/2012(H3N2) .....................G..............A....C.......C...CC.................................A.........G...T..C..G....G..............C.C.............A.....T...T....G......................C...T...............TG.A.....C........ 24 24 , 24 24 7:>KF789804,A/Virginia/16/2012(H3N2) 8 >KF789782,A/Michigan/33/2012(H3N2) .....................G..............A....C.......C...CC.................................A.........G...T..C..G....G..............C.C.............A.....T...T....G......................C...T...............TG.A.....C........ 24 24 , 24 24 8:>KF789782,A/Michigan/33/2012(H3N2) 9 >KF790488,A/South Carolina/22/2012(H3N2) .....................G..............A............C...CC.................................A.........G...T..C..G....G..............C.C.............A.....T...T....G......................C...T...............TG.A.....C........ 23 23 , 23 23 9:>KF790488,A/South Carolina/22/2012(H3N2) 10 >KF790479,A/South Carolina/24/2012(H3N2) .....................G..............A............C...CC.................................A.........G...T..C.TG....G..............C.C.............A.....T...T....G......................C...T...............TG.A.....C........ 24 24 , 24 24 10:>KF790479,A/South Carolina/24/2012(H3N2) 11 >KF789707,A/Kentucky/18/2012(H3N2) .....................G..............A............C...CC.................................A.........G...T..C..G....G..............C.C.............A.....T...T....G......................C...T...............TG.A.....C........ 23 23 , 23 23 11:>KF789707,A/Kentucky/18/2012(H3N2) 12 >KF790495,A/Tennessee/10/2012(H3N2) .....................G..............A............C...CC.................................A.........G...T..C..G....G..............C.C.............A.....T...T....G......................C...T...............TG.A.....C.C...... 25 24 , 25 24 12:>KF790495,A/Tennessee/10/2012(H3N2) 13 >KF789604,A/Kentucky/17/2012(H3N2) .....................G..............A............C...CC.................................A.........G...T..C..G....G..............C.C.............A.....T...T....G......................C...T...............TG.A.....C........ 23 23 , 23 23 13:>KF789604,A/Kentucky/17/2012(H3N2) 14 >KF790048,A/South Carolina/24/2012(H3N2) .....................G..............A............C...CC.................................A..T......G...T.YC..G....G..............C.C.............A.....T...T....G......................C...T...............TG.A.....C........ 25 25 , 25 25 14:>KF790048,A/South Carolina/24/2012(H3N2) 15 >KF789899,A/Kentucky/24/2012(H3N2) .....................G..............A............C...CC.................................A.........G...T.YC..G....G..............C.C.............A.....T...T....G......................C...T...............TG.A.....C........ 25 24 , 25 24 15:>KF789899,A/Kentucky/24/2012(H3N2) 16 >KF790491,A/Louisiana/11/2012(H3N2) ..............C......G..............A............C...C.....T...................T..............C...G...T..........G.........A....C.........A.....A.....T....A...G......................C....................G.A........T..... 26 22 , 26 22 16:>KF790491,A/Louisiana/11/2012(H3N2) 17 >KF790063,A/Delaware/23/2012(H3N2) C.......A...G..G.....G.G............A............C...C.........................T......................T..........G...C.....A....C........C......A..............G......................C..................T.G.A.............. 23 22 , 23 22 17:>KF790063,A/Delaware/23/2012(H3N2) 18 >KF790081,A/Delaware/23/2012(H3N2) C.......A...G..G.....G.G............A............C...C.........................T......................T..........G.........A....C........C......A..............G......................C..................T.G.A.............. 21 21 , 21 21 18:>KF790081,A/Delaware/23/2012(H3N2) 19 >KF789534,A/California/55/2012(H3N2) C.......A.T.G..G.A...GA.......A.....A............C...C........................................C.......T..........G..............C........C......A..............G....A.................C..................T.G.A.............. 24 24 , 24 24 19:>KF789534,A/California/55/2012(H3N2) 20 >KF789944,A/Florida/01/2013(H3N2) C.......A.T.G..G.....G........A.....A............C...C................................................T...M......G..G...........C........C......A..............G......................C..................T.G.A.............. 25 22 , 25 22 20:>KF789944,A/Florida/01/2013(H3N2) 21 >KF790287,A/South Carolina/16/2012(H3N2) C.......A.T.G..G.....G........A.....A............C...C................................................T..........G..............C........C......A..............G......................C..................T.G.A.............. 20 20 , 20 20 21:>KF790287,A/South Carolina/16/2012(H3N2) 22 >KF790212,A/Alaska/02/2013(H3N2) C.......A.T.G..G.....G........A.....A............C...C................................................T..........G..............C........C......A........A.....G......................C..................T.G.A.............. 21 21 , 21 21 22:>KF790212,A/Alaska/02/2013(H3N2) 23 >KF790407,A/Alaska/02/2013(H3N2) C.......A.T.G..G.....G........A.....A............C...C................................................T..........G..............C........C......A........A.....G......................C..................T.G.A.............. 21 21 , 21 21 23:>KF790407,A/Alaska/02/2013(H3N2) 24 >KF789805,A/Georgia/22/2012(H3N2) C.......A.T.G..G.....G........A.....A............C...C................................................T.......R..G..............C........C......A..............G......................C..................T.G.A.............. 21 21 , 21 21 24:>KF789805,A/Georgia/22/2012(H3N2) 25 >KF789665,A/Georgia/16/2012(H3N2) C....T..A...G..G.....G..............A........C...C...C.................GA........G....................T.......G..G..........T...C........C......A..............G.T....................C..................T.G.A.A............ 27 27 , 27 27 25:>KF789665,A/Georgia/16/2012(H3N2) 26 >KF789690,A/Georgia/15/2012(H3N2) C....T..A...G..G.....G..............A........C...C...C.................GA........G....................T.......G..G..........T...C........C......A..............G.T....................C..................T.G.A.A............ 27 27 , 27 27 26:>KF789690,A/Georgia/15/2012(H3N2) 27 >KF789983,A/Florida/39/2012(H3N2) C.......A...G..G.....G..............A............C..AC.A..............................................T.......G..GGA............C........C......A..............G......................C..................T.G.A.............. 26 23 , 26 23 27:>KF789983,A/Florida/39/2012(H3N2) 28 >KF789748,A/Louisiana/16/2012(H3N2) C.......A...G..G.....G..............A............C..AC.A..............................................T....Y.....G.A............C........C......A..............G......................C..................T.G.A.............. 23 22 , 23 22 28:>KF789748,A/Louisiana/16/2012(H3N2) 29 >KF790278,A/New York/40/2012(H3N2) C.......A...G..G.....G..............A............C..AC.A..............................................T..........G.A............C........C......A..............G......................C..................T.G.A.............. 21 21 , 21 21 29:>KF790278,A/New York/40/2012(H3N2) 30 >Index/32g12f1.c2,55-62 C.......A...G..G.....G...G..........A............C..AC.............................................A..T..........G.A.......A....C........C......A....T.........G......................C..................T.G.A.............. 24 24 , 24 24 30:>Index/32g12f1.c2,55-62 31 >KF790178,A/Vermont/16/2012(H3N2) C.......A...G..G.....G..............A............C...C................................................T..........G.A............C........C......A..............G......................C................G.T.G.A.............. 21 20 , 21 20 31:>KF790178,A/Vermont/16/2012(H3N2) 32 >KF789680,A/Virginia/14/2012(H3N2) C.......A...G..G.....G..............A............C...C................................................T..........G.A............C.....T..C......A..G...........G............G.........C..................T.G.A.............. 22 22 , 22 22 32:>KF789680,A/Virginia/14/2012(H3N2) 33 >KF789674,A/Maryland/43/2012(H3N2) C.......A...G..G.....G..............A............C...C................................................T..........G.A............C.....T..C......A..G...........G............G.........C..................T.G.A.............. 23 22 , 23 22 33:>KF789674,A/Maryland/43/2012(H3N2) 34 >KF789912,A/Alabama/35/2012(H3N2) C.......A...G..G.....G..............A............C...C................................................T..........G.A............C.....T..C......A..G...........G............G.........C..................T.G.A.............. 22 22 , 22 22 34:>KF789912,A/Alabama/35/2012(H3N2) 35 >KF790242,A/Nevada/26/2012(H3N2) C.......A...G..G.....G..............A............C...C.................................G..............T....M.....G..............C........C......A..............G......................C..................T.G.A....A......... 23 21 , 23 21 35:>KF790242,A/Nevada/26/2012(H3N2) 36 >KF790209,A/Mississippi/12/2012(H3N2) C.....C.A...G.CG.....G..............A............C...C..............G.................................T..........G..............C........C.....GA..............G......................C..................T.G.A.............. 22 22 , 22 22 36:>KF790209,A/Mississippi/12/2012(H3N2) 37 >KF790093,A/Wisconsin/37/2012(H3N2) C.....C.A...G.CG.....G..............A............C...C................................................T..........G..............C........C.....GA..............G......................C..................T.G.A.............. 22 21 , 22 21 37:>KF790093,A/Wisconsin/37/2012(H3N2) 38 >KF790402,A/Nebraska/04/2013(H3N2) C.....C.A...G.CG.....G..............A............C...C................................................T..........G..............C........C......A......A.......G......................C..................T.G.A.............. 22 21 , 22 21 38:>KF790402,A/Nebraska/04/2013(H3N2) 39 >KF790265,A/Mississippi/13/2012(H3N2) C.......A...G..G.....G..............A............C...C................................................T..........G..............C........C......A...Y..........G......................C..................T.G.A.............. 20 19 , 20 19 39:>KF790265,A/Mississippi/13/2012(H3N2) 40 >KF789596,A/Colorado/20/2012(H3N2) C.......A...G........G..............A............C...C................................................T..........G.........A....C........C......A..............G......................C..................T.G.A.............. 18 18 , 18 18 40:>KF789596,A/Colorado/20/2012(H3N2) 41 >Index/H3N3-2011-reassortedEI/2011(H3N2) .....................G..............A............C...C................................................T..........G..............C...............A..............G......................C....................G.A.............. 12 12 , 12 12 41:>Index/H3N3-2011-reassortedEI/2011(H3N2) 42 >Index/H3N2-2011-normalEI/2011(H3N2) C......................................T...................................................................................................G.............A.................................................................. 7 4 , 7 4 42:>Index/H3N2-2011-normalEI/2011(H3N2) 43 >KC892570,A/Pennsylvania/09/2012(H3N2) .......T........T........G......AAT.................................T........A...................T...........A.................G...........G..........................C....A............T................T.................. 16 16 , 16 16 43:>KC892570,A/Pennsylvania/09/2012(H3N2) 44 >KF789697,A/Pennsylvania/09/2012(H3N2) .......T........T........G......AAT.................................T........A.................C.T.....A.....A.................G...........G..........................C....A............T................T.................. 18 18 , 18 18 44:>KF789697,A/Pennsylvania/09/2012(H3N2) 45 >KF789838,A/Wisconsin/06/2013(H3N2) ................T........G......A.T.............T................G..T..G..G..A...................T...........AR................G...........G..........................C....A....A...........................G............... 20 19 , 20 19 45:>KF789838,A/Wisconsin/06/2013(H3N2) 46 >KF789767,A/New Mexico/11/2013(H3N2) C...............T........G......A.T.............T................G..T..G..G.GA...................T...........AR.....G..........G...........G..........................CA...A....A.........................A.G.............G. 26 25 , 26 25 46:>KF789767,A/New Mexico/11/2013(H3N2) 47 >KF789567,A/Idaho/03/2013(H3N2) C...............T........G......A.T.............T................G..T..G..G..A...................T...........A......G..........G...........G..........................CA...A....A.........................A.G.............G. 23 23 , 23 23 47:>KF789567,A/Idaho/03/2013(H3N2) 48 >KF790514,A/Arizona/11/2012(H3N2) C...............T........G......A.T.............T................G..TT.G..G..A...................T...........A......G..........G...........G..........................CA...A....A.........................A.G.............G. 25 24 , 25 24 48:>KF790514,A/Arizona/11/2012(H3N2) 49 >KF790408,A/Texas/11/2013(H3N2) ................T........G......A.T.............T................G..TT.G..G..A...................T...........A.................G...T.......G..........................C....A....A...........................G.............G. 21 21 , 21 21 49:>KF790408,A/Texas/11/2013(H3N2) 50 >KF790027,A/Massachusetts/07/2013(H3N2) ................T........G......A.T.......T.....T................G..TT.G..G..A...................T...........A.................G...........G.............A............C.A..A....A...........................G.............G. 25 23 , 25 23 50:>KF790027,A/Massachusetts/07/2013(H3N2) 51 >KF789585,A/Florida/46/2012(H3N2) ...........C....T...A....G......A.T.......T.....T................G..T..G..G..A...................T...........A.................G...........G..........................C....A....A...........................G.............G. 22 22 , 22 22 51:>KF789585,A/Florida/46/2012(H3N2) 52 >KF789889,A/Wisconsin/51/2012(H3N2) ................T...A....G......A.T.......T.....T................G..T..G..G..A...................T...........A.................G...........G..........................C....A....A...........................G.............G. 21 21 , 21 21 52:>KF789889,A/Wisconsin/51/2012(H3N2) 53 >KF789895,A/New Hampshire/21/2012(H3N2) ................T...A....G......A.T.......T.....T................G..T..G..G..A...................T...........A.................G...........G..........................C....A....A...........................G.............G. 22 21 , 22 21 53:>KF789895,A/New Hampshire/21/2012(H3N2) 54 >KF790411,A/Massachusetts/05/2013(H3N2) ................T........G......A.T.......T.....T................G..T..G..G..A...................T...........A.................G...........G.............A............C....A....A...........................G.............G. 21 21 , 21 21 54:>KF790411,A/Massachusetts/05/2013(H3N2) 55 >KF790310,A/Massachusetts/04/2013(H3N2) ................T........G......A.T.......T.....T................G..T..G..G..A...................T...........A.................G...........G.............A............C....A....A...........................G.............G. 23 21 , 23 21 55:>KF790310,A/Massachusetts/04/2013(H3N2) 56 >KF790482,A/Florida/09/2013(H3N2) ................T........G......A.T.......T.....T................G..T..G..G..A...................T...........A.................G...........G.............A............C....G....A...........................G.............G. 22 21 , 22 21 56:>KF790482,A/Florida/09/2013(H3N2) 57 >KF789954,A/Rhode Island/02/2013(H3N2) ................T........G......A.T.............T...............TG..T..G..G..A...................T.......C...A.................G...........G.............A............C....G....A...........................G.............G. 23 22 , 23 22 57:>KF789954,A/Rhode Island/02/2013(H3N2) 58 >KF789731,A/New Mexico/06/2013(H3N2) ................T........G......A.T.............T...............TG..T..G..G..A...................T...........A.................G...........G.............A............C....G....A...........................G.............G. 21 21 , 21 21 58:>KF789731,A/New Mexico/06/2013(H3N2) 59 >KF790148,A/Arkansas/03/2013(H3N2) ................T........GG.....A.T.............T................G..T..G..G..A...................T...........A.................G...........G.............A............C....G....A...........................G.....T.......G. 22 22 , 22 22 59:>KF790148,A/Arkansas/03/2013(H3N2) 60 >KF790144,A/Arkansas/13/2013(H3N2) ................T........GG.....A.T.............T................G..T..G..G..A...................T...........A.................G...........G.............A............C....G....A...........................G.....T.......G. 23 22 , 23 22 60:>KF790144,A/Arkansas/13/2013(H3N2) 61 >KF790136,A/Arkansas/07/2013(H3N2) ................T........GG.....A.T.............T................G..T..G..G..A...................T...........A.................G...........G.............A............C....G....A...........................G.....T.......G. 22 22 , 22 22 61:>KF790136,A/Arkansas/07/2013(H3N2) 62 >KF789970,A/Arkansas/06/2013(H3N2) ................T........GG.....A.T.............T................G..T..G..G..A...................T.........Y.A.................G...........G.............A............C....G....A...........................G.....T.......G. 24 23 , 24 23 62:>KF789970,A/Arkansas/06/2013(H3N2) 63 >KF789975,A/Arkansas/04/2013(H3N2) ................T........GG.....A.T.............T................G..T..G..G..A...................T...........A.................G...........G.............A............C....G....A...........................G.....T.......G. 22 22 , 22 22 63:>KF789975,A/Arkansas/04/2013(H3N2) 64 >KF789560,A/Florida/06/2013(H3N2) ................T........G......A.T.............T................G..T..G..G..A...................T...........A.................G...........G.............A............C....A....A...........................G.............G. 20 20 , 20 20 64:>KF789560,A/Florida/06/2013(H3N2) 65 >KF790362,A/New York/06/2013(H3N2) ................T........G......A.T.............T......A.........G..T..G..G..A...................T...........A.................G...........G.............A............C....A....A...........................G.............G. 21 21 , 21 21 65:>KF790362,A/New York/06/2013(H3N2) 66 >KF790302,A/New Jersey/02/2013(H3N2) ................T........G......A.T.............T................G..T..G..G..A...................T...........A.................G...........G.............A............C....A....A...........................G.............G. 20 20 , 20 20 66:>KF790302,A/New Jersey/02/2013(H3N2) 67 >KF790404,A/Iowa/02/2013(H3N2) ................T........G......A.T.............T................G..T..G..G..A...................C...........AR................G...........G.............A............C....A....A..........A................G.............G. 23 22 , 23 22 67:>KF790404,A/Iowa/02/2013(H3N2) 68 >KF789635,A/Texas/09/2013(H3N2) ................T........G......A.T.............T................G..T..G..G..A...................T...........AG................G...........G.............A............C....A....A...........................G.............G. 21 21 , 21 21 68:>KF789635,A/Texas/09/2013(H3N2) 69 >KF789842,A/North Carolina/06/2013(H3N2) ................T........G......A.T.............T................G..T..G..G..A...................T...........AG................G...........G.............A............C....A....A...........................G.............G. 21 21 , 21 21 69:>KF789842,A/North Carolina/06/2013(H3N2) 70 >KF790147,A/Texas/14/2013(H3N2) ................T........G......A.T.............T................G..T..G..G..A..C................T...........AG................G...........G.............A............C....A....A..........................GG.............G. 24 23 , 24 23 70:>KF790147,A/Texas/14/2013(H3N2) 71 >KF789965,A/Massachusetts/12/2013(H3N2) ................T........G......A.T.............T................G..T..G..G..A..C................T...........A.................G...........G.............A............C....A....A..................T........G.............G. 24 22 , 24 22 71:>KF789965,A/Massachusetts/12/2013(H3N2) 72 >KF790297,A/Massachusetts/13/2013(H3N2) .........C......T........G......A.T.............T................G..T..G..GC.A..C................T...........A.................G.........C.G.............A............C....A....A...........................G.............G. 25 24 , 25 24 72:>KF790297,A/Massachusetts/13/2013(H3N2) 73 >KF789849,A/Utah/07/2013(H3N2) ................T........G......A.T.............T................G..T..G..GC.A..C................T...........A.................G...........G.........T...A............C....A....A...........................G.............G. 23 23 , 23 23 73:>KF789849,A/Utah/07/2013(H3N2) 74 >KF790427,A/Missouri/05/2013(H3N2) ................T........G......A.T.............T................G..T..G..G..A...................T...........A.................G...........G.........A...A............C....A....AT..........................G.............G. 22 22 , 22 22 74:>KF790427,A/Missouri/05/2013(H3N2) 75 >KF790384,A/New Mexico/24/2012(H3N2) ................T........G......A.T.............T................G..T..G..G..A...................T...........AG................G...........G..........................C....A....AT..........................G.............G. 21 21 , 21 21 75:>KF790384,A/New Mexico/24/2012(H3N2) 76 >KF790137,A/Oklahoma/03/2013(H3N2) ................T........G......A.T.............T.........T......G..T..G..G..A...G...............T...........AG................G...........G..........................C....A..C.A...........................G.............G. 24 23 , 24 23 76:>KF790137,A/Oklahoma/03/2013(H3N2) 77 >KF790129,A/Virginia/06/2013(H3N2) C.......T.......T........G......A.T.............T.........T......G..T..G..G..A...................T...........A..T..............G...........G..........................C....A..C.A..................T........G.............G. 25 25 , 25 25 77:>KF790129,A/Virginia/06/2013(H3N2) 78 >KF790119,A/Louisiana/04/2013(H3N2) ................T.A......G......A.T.............T.........T......G..T..G..G..A...................T...........A.................G...........G..........................C....A..C.A...........................G.............G. 26 22 , 26 22 78:>KF790119,A/Louisiana/04/2013(H3N2) 79 >KF790201,A/North Carolina/01/2013(H3N2) .........................G......A.T.............T.........T.....TG..T..G..G..A...................T...........A.................G...........G..........................C....A..C.A...........................G.............G. 22 21 , 22 21 79:>KF790201,A/North Carolina/01/2013(H3N2) 80 >KF789829,A/Connecticut/13/2012(H3N2) ................T........G......A.T.............T...............T...T..G..G..A...................T...........A.................G..........AG........C.................C....A....A......C....................G.............G. 22 22 , 22 22 80:>KF789829,A/Connecticut/13/2012(H3N2) 81 >KF790118,A/Alaska/03/2013(H3N2) ................T........G.C....A.T.............T................GG.T..G..G..A...................T...........A....G............G...........G........C.................C....A....A...........................G.............G. 24 23 , 24 23 81:>KF790118,A/Alaska/03/2013(H3N2) 82 >KF789562,A/Massachusetts/06/2013(H3N2) ................T........G.C....A.T.............T................GG.T..G..G..A...................T...........A.................G...........G........C.................C....A....A...........................G.............G. 22 22 , 22 22 82:>KF789562,A/Massachusetts/06/2013(H3N2) 83 >KF789891,A/Kansas/16/2012(H3N2) ................T........G......A.T.............T................G..T..G..G..A...................T...........A.................G...........G........C.................C....A....A...........................G.............G. 20 20 , 20 20 83:>KF789891,A/Kansas/16/2012(H3N2) 84 >KF790053,A/Wyoming/01/2013(H3N2) ................T........G......A.T.............T................G..T..G..G..A...................T...........A.................G...........G........C.................C....A....A...........................G..........S..G. 22 21 , 22 21 84:>KF790053,A/Wyoming/01/2013(H3N2) 85 >KF790225,A/Texas/82/2012(H3N2) ................T........G......A.T.............T................G..T..G..G..A...................T...........A.................G...........G..........................C....A....A...........................G.............G. 19 19 , 19 19 85:>KF790225,A/Texas/82/2012(H3N2) 86 >KF790414,A/Nebraska/03/2013(H3N2) ................T........G......A.T.............T................G..T..G..G..A...................T...........A.................G...........G..........................C....A....A...........................G.............G. 21 19 , 21 19 86:>KF790414,A/Nebraska/03/2013(H3N2) 87 >KF790311,A/Nebraska/15/2012(H3N2) ................T........G......A.T.............T................G..T..G..G..A...................T...........A.................G...........G..........................C....A....A...........................G.............G. 19 19 , 19 19 87:>KF790311,A/Nebraska/15/2012(H3N2) 88 >KF789810,A/Iowa/22/2012(H3N2) ................T........G......A.T.............T................G..T..G..G..A...................T...........A.................G.T.........G..........................C....A....A...........................G.............G. 20 20 , 20 20 88:>KF789810,A/Iowa/22/2012(H3N2) 89 >KF789966,A/Rhode Island/06/2013(H3N2) ................T........G......A.T.............T................G..T..G..G..A.........G....A....T...........A.................A.T.........G..........................C....A....A...........................G............... 23 21 , 23 21 89:>KF789966,A/Rhode Island/06/2013(H3N2) 90 >KF790180,A/New York/37/2012(H3N2) ................T........G......A.T.............T................G..T..G..G..A.........G.........T...........A.................A.T.........G..........................C....A....A...........................G.............G. 21 21 , 21 21 90:>KF790180,A/New York/37/2012(H3N2) 91 >KF789958,A/West Virginia/01/2013(H3N2) ................T........G......A.T.............TY...............G..T..G..G..A.........GR........T...........A.................A.T.........G..........................C....A....A...........................G.............G. 23 23 , 23 23 91:>KF789958,A/West Virginia/01/2013(H3N2) 92 >KF790258,A/New York/39/2012(H3N2) ................T........G......A.T.............T................G..T..G..G..A.........G.........T...........A.................A.T.........G..........................C....A....A...........................G.............G. 21 21 , 21 21 92:>KF790258,A/New York/39/2012(H3N2) 93 >KF789872,A/Hawaii/02/2013(H3N2) ................T........G......A.T.............T................G..T..G..G..A.........G.........T.........T.AG................A.T.........G..........................C....A....A...........................G.............G. 23 23 , 23 23 93:>KF789872,A/Hawaii/02/2013(H3N2) 94 >KF790224,A/Rhode Island/08/2012(H3N2) ................T........G......A.T.............T................G..T..G..G..A.........G.........T...........A.................A.T.........G..........................C....A....A...........................G.............G. 21 21 , 21 21 94:>KF790224,A/Rhode Island/08/2012(H3N2) 95 >KF790277,A/New York/39/2012(H3N2) ................T........G......A.T.............T................G..T..G..G..A.........G...K.....T......M....A.................A.T.........G..........................C....A....A...........................G.............G. 24 23 , 24 23 95:>KF790277,A/New York/39/2012(H3N2) 96 >KF789774,A/Massachusetts/11/2013(H3N2) ................T........G......A.T...........A.T................G..T..G..G..A...................T...........A.................G...........G.......G..................C....A....A...........................G.............G. 22 21 , 22 21 96:>KF789774,A/Massachusetts/11/2013(H3N2) 97 >KF790232,A/Iowa/14/2012(H3N2) ................T........G......A.T.............T................G..T..G..G..A...................T...Y.......A.................G...........G..........................C....A....A...........................G.............G. 20 20 , 20 20 97:>KF790232,A/Iowa/14/2012(H3N2) 98 >KF789841,A/New Jersey/03/2013(H3N2) ................T........G......A.T.............T................G..T..G..G..A..............A....T...........A.................G...........G..........................C....A....A...........................G.............G. 20 20 , 20 20 98:>KF789841,A/New Jersey/03/2013(H3N2) 99 >KF790416,A/Iowa/01/2013(H3N2) ................T........G......A.T.............T........A.......G..T..G..G..A...................T...........A.................G...........G..........................C....A....A...........................G.............G. 21 20 , 21 20 99:>KF790416,A/Iowa/01/2013(H3N2) 100 >KF790248,A/Iowa/15/2012(H3N2) ................T........G......A.T.............T................G..T..G..G..A...................T...........A.................G...........G..........................C....A....A...........................G.............G. 19 19 , 19 19 100:>KF790248,A/Iowa/15/2012(H3N2) 101 >KF790459,A/North Dakota/01/2013(H3N2) ..........T.....T........G......A.T.............T................G..T..G..G..A...................T...........A.................G...........G..........................C....A....A...........................G.............G. 21 20 , 21 20 101:>KF790459,A/North Dakota/01/2013(H3N2) 102 >KF790483,A/West Virginia/11/2013(H3N2) .........A......T........G......A.T.............T................G..T..G..G..A...................T...........A.................G...........G..........................C....A....A........G..C...............G.............G. 22 22 , 22 22 102:>KF790483,A/West Virginia/11/2013(H3N2) 103 >KF789974,A/West Virginia/05/2013(H3N2) .........A......T........G......A.T.............T................G..T..G..G..A...................T...........A.................G...........G..........................C....A....A........G..C...............G.............G. 22 22 , 22 22 103:>KF789974,A/West Virginia/05/2013(H3N2) 104 >KF789858,A/West Virginia/10/2013(H3N2) .........A......T........G......A.T.............T................G..T..G..G..A...................T...........A.................G...........G..........................C....A....A........G..C...............G.............G. 22 22 , 22 22 104:>KF789858,A/West Virginia/10/2013(H3N2) 105 >KF789978,A/West Virginia/06/2013(H3N2) .........A......T........G......A.T.............T................G..T..G..G..A...................T...........A.................G...........G..........................C....A....A........G..C...............G.............G. 22 22 , 22 22 105:>KF789978,A/West Virginia/06/2013(H3N2) 106 >KF790419,A/New York/60/2012(H3N2) ................T........G......A.T.............T................G..T..G..G..A...................T...........A.................G...........G..........................C....A....A...........................G.............G. 19 19 , 19 19 106:>KF790419,A/New York/60/2012(H3N2) 107 >KF789736,A/Montana/03/2013(H3N2) ................T........G......A.T.............T................G..T..G..G..A...................T...........A...............C.G...........G..........................C....A....A...........................G.............G. 22 20 , 22 20 107:>KF789736,A/Montana/03/2013(H3N2) 108 >KF789770,A/North Carolina/28/2012(H3N2) ................T........G......A.T.............T................G..TK.G..G..A...................T...........A...............C.G...........G..........................C....A....A...........................G.............G. 22 21 , 22 21 108:>KF789770,A/North Carolina/28/2012(H3N2) 109 >KF790339,A/Delaware/06/2013(H3N2) ................T...............A.T.............T................G..TK.G..G..A....G..............T...........A.................G...........G..........................C..G.A....A.A.........................G.............G. 24 22 , 24 22 109:>KF790339,A/Delaware/06/2013(H3N2) 110 >KF789637,A/Idaho/24/2012(H3N2) ................T...............A.T.............T................G..T..G..G..A....G..............T...........A.................G...........G..........................C..G.A....A.A.........................G.............G. 21 21 , 21 21 110:>KF789637,A/Idaho/24/2012(H3N2) 111 >KF789828,A/Idaho/38/2012(H3N2) ................T...............A.T.............T................G..T..G..G..A....G..............T...........AR................G...........G..........................C..G.A....A.A.........................G.............G. 23 22 , 23 22 111:>KF789828,A/Idaho/38/2012(H3N2) 112 >KF789541,A/Colorado/02/2013(H3N2) ................T...............A.T.............T................G..T..G..G..A....G..............T...........A.................G...........G..........................C..G.A....A.A.........................G.............G. 21 21 , 21 21 112:>KF789541,A/Colorado/02/2013(H3N2) 113 >KF790127,A/Colorado/27/2012(H3N2) ................T...............A.T.............T................G..T..G..G..A.T..G..............T...........A.................G...........G.........M................C..G.A....A.A.........................G.............G. 23 23 , 23 23 113:>KF790127,A/Colorado/27/2012(H3N2) 114 >KF789544,A/Washington/06/2013(H3N2) ................T...............A.T.............T................G..T..G..G..A....G..............T...........A.................G...........G..........................C..G.A....A.A.........................G.............G. 21 21 , 21 21 114:>KF789544,A/Washington/06/2013(H3N2) 115 >KF790418,A/New Hampshire/03/2013(H3N2) ................TA..............A.T.............T................G..T..G..G..A....G..............T...........A.................G...........G..........................C..G.A....A.A.........................G.............G. 23 22 , 23 22 115:>KF790418,A/New Hampshire/03/2013(H3N2) 116 >KF789627,A/California/16/2013(H3N2) ................T...............A.T.............T................G..T..G..G..A....G..............T...........A.................G...........G..........................C..G.A....A.A.........................G.............G. 21 21 , 21 21 116:>KF789627,A/California/16/2013(H3N2) 117 >KF789847,A/Washington/07/2013(H3N2) ................T...............A.T.............T................G..T..G..G..A....G..............T...........A.................G...........G..........................C..G.A....A.A.........................G.............G. 23 21 , 23 21 117:>KF789847,A/Washington/07/2013(H3N2) 118 >KF789753,A/Washington/60/2012(H3N2) ................T...............A.T.............T................G..T..G..G..A....G..............T...........A.................G...........G..........................C..G.A....A.A.........................G.............G. 21 21 , 21 21 118:>KF789753,A/Washington/60/2012(H3N2) 119 >KF789799,A/Idaho/37/2012(H3N2) ................T...............A.T.............T................G..T..G..G..A....G..............T...........A.................G...........G..........................C..G.A....A.A.........................G.............G. 24 21 , 24 21 119:>KF789799,A/Idaho/37/2012(H3N2) 120 >KF789947,A/Alaska/01/2013(H3N2) ................T...............A.T.............T................G..T..G..G..A....G..............T...........A.................G...........G..........................C..G.A....A.A.........................G.............G. 21 21 , 21 21 120:>KF789947,A/Alaska/01/2013(H3N2) 121 >KF790527,A/Minnesota/17/2012(H3N2) ................T...............A.T.............T..........T.....G..T..G..G..A....G..............T...........A.................G...........G..........................C..G.A....A.A.........................G.............G. 22 22 , 22 22 121:>KF790527,A/Minnesota/17/2012(H3N2) 122 >KF790348,A/Utah/03/2013(H3N2) ................T...............A.T.............T................G..T..G..G..A....G..............T...........A.................G...........G..........................C..G.A....A.A.........................G.............G. 21 21 , 21 21 122:>KF790348,A/Utah/03/2013(H3N2) 123 >KF790503,A/Nevada/03/2013(H3N2) ................T...............A.T.............T................G..T..G..G..A....G..............T...........A.................G...........G..........................C..G.A....A.A.............T...........G.............G. 23 22 , 23 22 123:>KF790503,A/Nevada/03/2013(H3N2) 124 >KF790329,A/Nevada/36/2012(H3N2) ................T...............A.T.............T................G..T..G..G..A....G..............T...........A.................G...........G..........................C..G.A....A.A.............T...........G.............G. 22 22 , 22 22 124:>KF790329,A/Nevada/36/2012(H3N2) 125 >KF789915,A/Delaware/24/2012(H3N2) ................T...............A.T.............T................G..T..G..G..A....G..............T...........A.................G...........G..........................C..G.A....A.A.........................G.............G. 21 21 , 21 21 125:>KF789915,A/Delaware/24/2012(H3N2) 126 >KF790065,A/Minnesota/01/2013(H3N2) C...............T...............A.T.............T................G..T..G..G..A....G..............T...........A.................G...........G..........................C..G.A....A.A.........................G.....A.......G. 23 23 , 23 23 126:>KF790065,A/Minnesota/01/2013(H3N2) 127 >KF789957,A/Montana/01/2013(H3N2) ................T...............A.T.............T................G..T..G..G..A....G..............T...........A.................G...........G..........................C..G.A....A.A.........................G.............G. 21 21 , 21 21 127:>KF789957,A/Montana/01/2013(H3N2) 128 >KF790214,A/Idaho/23/2012(H3N2) ................T...............A.T.............T................G..T..G..G..A....G..............T...........A.................G...........G..........................C..G.A....A.A.........................G.............G. 21 21 , 21 21 128:>KF790214,A/Idaho/23/2012(H3N2) 129 >KF790330,A/Maryland/01/2013(H3N2) ................T...............A.T.............T................G..T..G..G..A....G..............T...........A.................G...........G..........................C..G.A....A.A.........................G.............G. 23 21 , 23 21 129:>KF790330,A/Maryland/01/2013(H3N2) 130 >KF790001,A/Washington/50/2012(H3N2) ................T...............A.T.............T................G..T..G..G..A....G..............T...........A.................G...........G..........................C..G.A....A.A.........................G.............G. 21 21 , 21 21 130:>KF790001,A/Washington/50/2012(H3N2) 131 >KF790077,A/Oregon/15/2012(H3N2) ................T...............A.T.............T................G..T..G..G..A....G..............T...........A.................G...........G......C...................C..G.A....A.A.........................G.............G. 22 22 , 22 22 131:>KF790077,A/Oregon/15/2012(H3N2) 132 >KF789818,A/Washington/61/2012(H3N2) ................T...............A.T.............T................G..T..G..G..A....G..............T...........A.................G...........G..........................C..G.A....A.A.........................G.............G. 21 21 , 21 21 132:>KF789818,A/Washington/61/2012(H3N2) 133 >KF790438,A/Utah/27/2012(H3N2) ................T...............A.T.............T................G..T..G..G..A....G..............T...........A.................G...........G..................A.......C..G.A....A.A.........................G.............G. 22 22 , 22 22 133:>KF790438,A/Utah/27/2012(H3N2) 134 >KF789590,A/Nevada/27/2012(H3N2) ................T...............A.T.............T................G..T..G..G..A....G..............T...........A.................G...........G..........................C..G.A....A.A.........................G.............G. 21 21 , 21 21 134:>KF789590,A/Nevada/27/2012(H3N2) 135 >KF790331,A/Washington/04/2013(H3N2) ................T...............A.T.............T................G..T..G..G..A....G..............T...........A.................G...........G..........................C..G.A....A.A.........................G.............G. 22 21 , 22 21 135:>KF790331,A/Washington/04/2013(H3N2) 136 >KF789539,A/Michigan/01/2013(H3N2) ................T...............A.T.............T................G..T..G..G..A....G..............T...........A.................G...........G..........................C..G.A....A.A.........................G.............G. 21 21 , 21 21 136:>KF789539,A/Michigan/01/2013(H3N2) 137 >KF790516,A/Washington/53/2012(H3N2) ................T...............A.T.............T................G..T..G..G..A....G..............T...........A.................G...........G..........................C..G.A....A.A.........................G.............G. 22 21 , 22 21 137:>KF790516,A/Washington/53/2012(H3N2) 138 >KF790307,A/Missouri/02/2013(H3N2) ................T...............A.T.............T................G..T..G..G..A....G..............T...........A.................G...........G..........................C..G.A....A.A.........................G.............G. 21 21 , 21 21 138:>KF790307,A/Missouri/02/2013(H3N2) 139 >KF790076,A/Nebraska/02/2013(H3N2) ................T...............A.T.............T................G..T..G..G..A....G.............GT...........A.................G...........G.................T........C..G.A....A.A.........................G.............G. 24 23 , 24 23 139:>KF790076,A/Nebraska/02/2013(H3N2) 140 >KF789623,A/Kentucky/03/2013(H3N2) ................T........G......A.T.............T...........A....G..T..G..G..A..................GT...........A.................G......T....G..........................C....A....A...........................G.............G. 23 22 , 23 22 140:>KF789623,A/Kentucky/03/2013(H3N2) 141 >KF789597,A/Alabama/24/2012(H3N2) ................T........G......A.T.............T...........A....G..T..G..G..A..................GT...........A.................G......T....G..........................C....A....A...........................G.............G. 22 22 , 22 22 141:>KF789597,A/Alabama/24/2012(H3N2) 142 >KF790114,A/Alabama/17/2012(H3N2) ................T........G......A.T.............T...........A....G..T..G..G..A..................GT...........A.................G......T....G..........................C....A....A...........................G.............G. 22 22 , 22 22 142:>KF790114,A/Alabama/17/2012(H3N2) 143 >KF789600,A/Montana/13/2012(H3N2) ................T........G......A.T.............T...........A....G..T..G..G..A..................GT...........A.................G......T....G..........................C....A....A...........................G.............G. 23 22 , 23 22 143:>KF789600,A/Montana/13/2012(H3N2) 144 >KF790351,A/Kentucky/01/2013(H3N2) ................T........G......A.T.............T...........A....G..T..G..G..A..................GT...........A.................G......T....G..........................C....A....A...........................G.............G. 22 22 , 22 22 144:>KF790351,A/Kentucky/01/2013(H3N2) 145 >KF790257,A/Alabama/18/2012(H3N2) ................T........G......A.T.............T...........A....G..T..G..G..A..................GT...........A.................G......T....G..........................C....A....A...........................G.............G. 23 22 , 23 22 145:>KF790257,A/Alabama/18/2012(H3N2) 146 >KF789662,A/Alabama/17/2012(H3N2) ................T........G......A.T.............T...........A....G..T..G..G..A..................GT...........A.................G......T....G..........................C....A....A...........................G.............G. 22 22 , 22 22 146:>KF789662,A/Alabama/17/2012(H3N2) 147 >KF789949,A/New York/04/2013(H3N2) ......C.........T........G......A.T.............T...........A....G..T..G..G..A...................T...........A.................G...........G.............A............C....A....A...........................G.........T...G. 23 23 , 23 23 147:>KF789949,A/New York/04/2013(H3N2) 148 >KF789879,A/Virginia/03/2013(H3N2) ................T........G......A.T.............T................G..T..G..G..A...................T...........A.................G...........G.............A............C....A....A...........................G.............G. 20 20 , 20 20 148:>KF789879,A/Virginia/03/2013(H3N2) 149 >KF790010,A/Wisconsin/08/2013(H3N2) ................T........G......A.T.............T....C...........G..T..G..G..A...................T...........A.................G...........G.............A............C....A....A...........................G.............G. 22 21 , 22 21 149:>KF790010,A/Wisconsin/08/2013(H3N2) 150 >KF790389,A/Minnesota/04/2013(H3N2) ................T........G......A.T.............T................G..T..G..G..A...................T...........A.................G...........G.............A............C....A....A...........................G.............G. 22 20 , 22 20 150:>KF790389,A/Minnesota/04/2013(H3N2) 151 >KF789968,A/Florida/21/2013(H3N2) ................T........G......A.T.............T................G..T..G..G..A......A............T...........A.................G...........G.............A............C....A....A...........................G.............G. 22 21 , 22 21 151:>KF789968,A/Florida/21/2013(H3N2) 152 >KF790032,A/Florida/08/2013(H3N2) ................T........G......A.T.............T................G..T..G..G..A...................T...........A.................G...........G.............A............C....A....A...........................G.............G. 20 20 , 20 20 152:>KF790032,A/Florida/08/2013(H3N2) 153 >KF790037,A/North Dakota/02/2013(H3N2) ................T........G......A.T.............T................G..T..G..G..A...................T...........A.................G...........G.............A............C....A....A.A..............C..........G.............G. 22 22 , 22 22 153:>KF790037,A/North Dakota/02/2013(H3N2) 154 >KF789840,A/California/18/2013(H3N2) ................T........G......A.T.............T................G..T..G..G..A...................T...........A.................G...........G.............A............C....A....A................C..........G.............G. 21 21 , 21 21 154:>KF789840,A/California/18/2013(H3N2) 155 >KF789874,A/Massachusetts/15/2012(H3N2) ................T........G......A.T.............T................G..T..G..G..A...................T...........A.................G...........G.............A............C....A....A...........................G.............G. 21 20 , 21 20 155:>KF789874,A/Massachusetts/15/2012(H3N2) 156 >KF789888,A/New Jersey/05/2013(H3N2) ............G...T........G......A.T.............T................G..T..G..G..A...................T...........A.................G...........G.............A............C....A....A...........................G.............G. 21 21 , 21 21 156:>KF789888,A/New Jersey/05/2013(H3N2) 157 >KF790256,A/Pennsylvania/20/2012(H3N2) ................T........G......A.T.............T................G..T..G..G..A...................T...........A.................G...........G.............A............C....A....A...........................G.............G. 20 20 , 20 20 157:>KF790256,A/Pennsylvania/20/2012(H3N2) 158 >KF790403,A/Delaware/08/2013(H3N2) ................T........G......A.T.............T................G..T..G..G..A...................T...........A.................G...........G.............A............C....A....A...........................G.............G. 21 20 , 21 20 158:>KF790403,A/Delaware/08/2013(H3N2) 159 >KF789822,A/New York/47/2012(H3N2) ................T........G......A.T.............T................G..T..G..G..A...................T...........A.................G...........G.............A............C....A....A...........................G.............G. 20 20 , 20 20 159:>KF789822,A/New York/47/2012(H3N2) 160 >KF789630,A/Wyoming/03/2013(H3N2) ................T.A......G......A.T.............T................G..T..G..G..A...................T...........A.................G...........G.............A............C....A....A...........................G.............G. 21 21 , 21 21 160:>KF789630,A/Wyoming/03/2013(H3N2) 161 >KF790039,A/New York/05/2013(H3N2) ................T........G......A.T.............T................G..T..G..G..A...................T...........A.................G...........G.............A............C....A....A.........T...............A.G.............G. 22 22 , 22 22 161:>KF790039,A/New York/05/2013(H3N2) 162 >KF789660,A/Maryland/06/2013(H3N2) ................T........G......A.T.............T................G..T..G..G..A...................T.........T.A.................G...........G..........................C....A....A.........T.................G.............G. 24 21 , 24 21 162:>KF789660,A/Maryland/06/2013(H3N2) 163 >KF789591,A/New Jersey/04/2012(H3N2) ................T........G......A.T.............T.T.................T..G..G..A...................T...........A.................G...........G..........................C....A....A...........................GA.......C....G. 21 21 , 21 21 163:>KF789591,A/New Jersey/04/2012(H3N2) 164 >KF789671,A/New Jersey/08/2012(H3N2) ................T........G......A.T.............T...................T..G..G..A...................T...........A.................G...........G.............A............C....A....A...........................G.............G. 20 19 , 20 19 164:>KF789671,A/New Jersey/08/2012(H3N2) 165 >KC892601,A/Alaska/04/2012(H3N2) ................T..G.....G......A.T.............T..................TT.....G.GA...................T...........A.................G...........G..........................C....A...G..................T.........G.............G. 21 21 , 21 21 165:>KC892601,A/Alaska/04/2012(H3N2) 166 >KF790088,A/Alaska/04/2012(H3N2) ................T..G.....G......A.T.............T..................TT.....G.GA.............T.....T...........A........G........G...........G..........................C....A...G..................T.........G.............G. 24 23 , 24 23 166:>KF790088,A/Alaska/04/2012(H3N2) 167 >KF790275,A/Arizona/09/2012(H3N2) ................T........G..C...A.T........T....T...................T.....G..A.............TT....T...........A.....A..S........G...A.......G......C...................C....A................................G.............G. 24 24 , 24 24 167:>KF790275,A/Arizona/09/2012(H3N2) 168 >KF790270,A/Arizona/09/2012(H3N2) ................T........G..C...A.T........T....T...................T.....G..A..............T....T...........A.....A...........G...A.......G......C...................C....A................................G.............G. 22 22 , 22 22 168:>KF790270,A/Arizona/09/2012(H3N2) 169 >KF790286,A/Indiana/161/2012(H3N2) ................T........G..C...A.T........T....T...................T.....G..A..............T....T...........AG....A...........G...A.......G......C...................C....A................................G.............G. 24 23 , 24 23 169:>KF790286,A/Indiana/161/2012(H3N2) 170 >KF789871,A/Michigan/02/2013(H3N2) ................T........G......A.T........T....T...................TT....GC.A........C..........T...........AG....A...........G...A.......G......C...................C....A................................GA............G. 26 25 , 26 25 170:>KF789871,A/Michigan/02/2013(H3N2) 171 >KF790011,A/Oklahoma/08/2013(H3N2) ................T........G......A.T........T....T...................T.....G..A........C..........T...........A.....A...........G...A.......G......C...................C....A................................G.............G. 23 21 , 23 21 171:>KF790011,A/Oklahoma/08/2013(H3N2) 172 >KF790345,A/Indiana/01/2013(H3N2) ................T........G......A.T........T....T...................T.....G..A........C..........T...........A.....A...........G...A.......G......C...................C....A................................G.............G. 22 21 , 22 21 172:>KF790345,A/Indiana/01/2013(H3N2) 173 >KF789998,A/Montana/10/2012(H3N2) ................T........G......A.T........T....T...................T.....G..A...................T...........A.....A...........G...A.......G......C...........A.......C....A.............G..................G.............G. 22 22 , 22 22 173:>KF789998,A/Montana/10/2012(H3N2) 174 >KF789613,A/North Carolina/04/2013(H3N2) ................T....G...G......A.T........T....T...................T.....G..A...................T...........A.....A...........G...A.......G......C...................C....A................................G.............G. 22 21 , 22 21 174:>KF789613,A/North Carolina/04/2013(H3N2) 175 >KF790378,A/Alaska/05/2013(H3N2) ................T........G......A.T........T....T...................T.....G..A...................T...G.......A.....A...........G...A.......G......C...................C....A................................G.............G. 21 21 , 21 21 175:>KF790378,A/Alaska/05/2013(H3N2) 176 >KF790109,A/Delaware/10/2012(H3N2) ................T........G......A.T........T....T...................T.....G..A.......T...........T...........A.....A...........G...A.......G......C...................C....A................................G.............G. 21 21 , 21 21 176:>KF790109,A/Delaware/10/2012(H3N2) 177 >KF790429,A/Delaware/11/2012(H3N2) ................T........G......A.T........T....T...................T.....G..A.......T...........T...........A.....A...........G...A.......G......C...................C....A................................G.............G. 21 21 , 21 21 177:>KF790429,A/Delaware/11/2012(H3N2) 178 >KF789701,A/Delaware/01/2013(H3N2) ................T........G......A.T........T....T...................T.....G..A.......T...........T...........A.....A...........G...A.......G......C...................C....A................................G.............G. 21 21 , 21 21 178:>KF789701,A/Delaware/01/2013(H3N2) 179 >KF790440,A/Delaware/15/2012(H3N2) ................T........G......A.T........T....T...................T.....G..A.......T...........T...........A.....A...........G...A.......G......C...................C....A................................G.............G. 21 21 , 21 21 179:>KF790440,A/Delaware/15/2012(H3N2) 180 >KF789569,A/Alaska/06/2013(H3N2) ................T........G......A.T........T....T....C..............T.....G..A...................T...........A.....A...........G...A.......G......C...................C....A................................G.............G. 21 21 , 21 21 180:>KF789569,A/Alaska/06/2013(H3N2) 181 >KF790167,A/Washington/52/2012(H3N2) ................T........G......A.T........T....T....C..............T.....G..A...................T...........A.....A...........G...A.......G..........................C....A................................G.............G. 20 20 , 20 20 181:>KF790167,A/Washington/52/2012(H3N2) 182 >KF789780,A/Kansas/14/2012(H3N2) ................T........G......A.T........T....T...................T.....G..A...................T...........A.....A...........G...A.......G.G........................C....A................................G.............G. 20 20 , 20 20 182:>KF789780,A/Kansas/14/2012(H3N2) 183 >KF790464,A/Oklahoma/05/2013(H3N2) ................T........G......A.T........T....T...................T.....G..A...................T...........A.....A...........G...A.......G.G........................C....A................................G.............G. 20 20 , 20 20 183:>KF790464,A/Oklahoma/05/2013(H3N2) 184 >KF790360,A/Oklahoma/05/2013(H3N2) ................T........G......A.T........T....T...................T.....G..A.............T.....T......Y....A.....A...........G...A.......G.G........................C....A................................G.............G. 22 22 , 22 22 184:>KF790360,A/Oklahoma/05/2013(H3N2) 185 >KF790197,A/Florida/40/2012(H3N2) ................T........G......A.T........T....T..A................T.....G..A.A...........T.....T...........A.....A...........G...A.......G..........................C....A................................G.............G. 23 22 , 23 22 185:>KF790197,A/Florida/40/2012(H3N2) 186 >KF789661,A/Hawaii/24/2012(H3N2) ................T........G......A.T........T....T..A................T.....G..A...................T.........Y.A.....A...........G...A.......G..........................C....A................................G.............G. 22 21 , 22 21 186:>KF789661,A/Hawaii/24/2012(H3N2) 187 >KF790064,A/Vermont/28/2012(H3N2) ...G............T........G......A.T........T....T..A................T.....G..A.................C.T...........A.....A...........G...A.......G..........................C....A................................G.............G. 23 22 , 23 22 187:>KF790064,A/Vermont/28/2012(H3N2) 188 >KF790084,A/Vermont/28/2012(H3N2) ...G............T........G......A.T........T....T..A................T.....G..A...................T...........AR....A...........G...A.......G..........................C....A................................G.............G. 22 22 , 22 22 188:>KF790084,A/Vermont/28/2012(H3N2) 189 >KF789714,A/Texas/91/2012(H3N2) ................T........G......A.T........T....T.T.................T.....G..A...................T...........AG....A...........G...A.......G..........................C....A................................G.............G. 21 21 , 21 21 189:>KF789714,A/Texas/91/2012(H3N2) 190 >KF789614,A/Maryland/03/2013(H3N2) ................T........G......A.T........T....T...................T.....G..A...................T...........A.....A...........G...A.......G..........................C....A.................A..............G.............G. 21 20 , 21 20 190:>KF789614,A/Maryland/03/2013(H3N2) 191 >KF790356,A/Utah/02/2013(H3N2) ................T........G......A.T........T....T...................T.....G..A...................T...........A.....A...........G...A.......G..........................C....A................................G.............G. 20 19 , 20 19 191:>KF790356,A/Utah/02/2013(H3N2) 192 >KF790153,A/California/04/2013(H3N2) ................T........G......A.T........T....T...................T.....G..A...................T...........A.....A...........G...A.......G..........................C....A................................G.............G. 20 19 , 20 19 192:>KF790153,A/California/04/2013(H3N2) 193 >KF790457,A/New Mexico/05/2013(H3N2) ................T........G......A.T........T....T...................T.....G..A...................T...........A.....A...........G...A.......G..........................C....A................................G.............G. 19 19 , 19 19 193:>KF790457,A/New Mexico/05/2013(H3N2) 194 >KF789684,A/Rhode Island/09/2012(H3N2) ................T........G......A.T........T....T........A..........T.....G..A...................T.........M.A.....A...........G...A.......G..........................C....A................................G.............G. 21 21 , 21 21 194:>KF789684,A/Rhode Island/09/2012(H3N2) 195 >KF789547,A/Pennsylvania/03/2013(H3N2) ................T........G......A.T........T....T........A..........T.....G..A...................T...........A.....A.....A.....G...A.......G..........................C....A................................G.............G. 22 21 , 22 21 195:>KF789547,A/Pennsylvania/03/2013(H3N2) 196 >Index/32g12f1.c2,10-37 ................T........G......A.T........T....T...................T.....G..A...................T...........A.....A...........G...A.......G..........................C....A................................G.............G. 19 19 , 19 19 196:>Index/32g12f1.c2,10-37 197 >KF789752,A/Oregon/12/2012(H3N2) ................T........G......A.T........T....T...................T.....G..A...................T...........A.....A...........G...A.......G..........................C....A................................G.............G. 22 19 , 22 19 197:>KF789752,A/Oregon/12/2012(H3N2) 198 >KF790532,A/Maryland/05/2013(H3N2) .............A..T........G......A.T........T....T...................T..G..G..A...................T...........A.....A....A......G...A.......G..........................C....A................................G.............G. 22 22 , 22 22 198:>KF790532,A/Maryland/05/2013(H3N2) 199 >KF790316,A/District Of Columbia/02/2012(H3N2) .............A..T........G......A.T...C....T....T...................T..G..G..A...................T........A..A.....A....A......G...A.......G..........................C....A................................G.............G. 24 24 , 24 24 199:>KF790316,A/District Of Columbia/02/2012(H3N2) 200 >KF790361,A/Florida/12/2013(H3N2) .............A..T........G......A.T........T....T...................T.....G..A...................T...........A.....A....A......G...A.......G........C.................C....A................................G.............G. 22 22 , 22 22 200:>KF790361,A/Florida/12/2013(H3N2) 201 >KF789618,A/Nebraska/06/2013(H3N2) .............A..T........G......A.T........T....T...................T.....G..A...................T...........A.....A....A......G...A.......G..........................C....A................................G.............G. 22 21 , 22 21 201:>KF789618,A/Nebraska/06/2013(H3N2) 202 >KF790106,A/Kentucky/16/2012(H3N2) ......C......A..T........G......A.T........T....T...................T.....G..A...................T...........A.....A....A......G...A.......G..........................C....A................................G.............G. 22 22 , 22 22 202:>KF790106,A/Kentucky/16/2012(H3N2) 203 >KF790059,A/Texas/111/2012(H3N2) ................T........G......A.T........T....T...................T.....G..A...................T...........A.....A...........G...A.......G..........................C....A................................G.............G. 19 19 , 19 19 203:>KF790059,A/Texas/111/2012(H3N2) 204 >KF790060,A/Texas/81/2012(H3N2) ................T........G......A.T........T....T...................T.....G..A...................T...........A.....A...........G...A.......G.............A............C....A................................G.............G. 20 20 , 20 20 204:>KF790060,A/Texas/81/2012(H3N2) 205 >KF790448,A/California/42/2012(H3N2) ................T........G......A.T........T....T...................T.....G..A...................T...........A.....A...........G...A.......G.............A............C....A................................G.............G. 21 20 , 21 20 205:>KF790448,A/California/42/2012(H3N2) 206 >KF789535,A/California/15/2013(H3N2) ................T........G......A.T........T...AT...................T.G...G..A...................T...........A.....A...........G...A.......G..........................C....A................................G..A..........G. 22 22 , 22 22 206:>KF789535,A/California/15/2013(H3N2) 207 >KF789725,A/Montana/14/2012(H3N2) ................T........G......A.T........T...AT...................T.G...G..A...................T...........A.....A...........G...A.......G..........................C....A................................G..A..........G. 22 22 , 22 22 207:>KF789725,A/Montana/14/2012(H3N2) 208 >KF789982,A/New York/35/2012(H3N2) ................T........G......A.T........T....T...................T.....G..A...................T...........A.....A...........G...A.......G..........................C....A................................G.............G. 22 19 , 22 19 208:>KF789982,A/New York/35/2012(H3N2) 209 >KF790049,A/Texas/01/2013(H3N2) ................T........G......A.T.............T...................TT....G..A...................T...........A.....A...........G...A.......G..........................C....A................................G............... 18 18 , 18 18 209:>KF790049,A/Texas/01/2013(H3N2) 210 >KF790524,A/Maryland/33/2012(H3N2) ................T........G......A.T.............T...................T.....G..A...................T...........A.................G......T....G..................A.....A.C....A................................G.............G. 22 19 , 22 19 210:>KF790524,A/Maryland/33/2012(H3N2) 211 >KF790325,A/Delaware/07/2013(H3N2) ................T........G......T.T.............T...................T...A.G..A...................T...........AR................G...........G..........................C....A................................G.............G. 18 18 , 18 18 211:>KF790325,A/Delaware/07/2013(H3N2) 212 >KF789664,A/Maryland/29/2012(H3N2) ................T........G......A.T.............T...................T.....G..A...................T...........A.................G...........G..........................C....A...........................G....G.............G. 18 17 , 18 17 212:>KF789664,A/Maryland/29/2012(H3N2) 213 >Index/32g12f1.c2,38-41 ................T........G......A.T....A........T..............A....T.....G..A..............A....T...........A.................G...........G..........................C....A...............................GG.............G. 23 20 , 23 20 213:>Index/32g12f1.c2,38-41 214 >KF790138,A/North Carolina/02/2013(H3N2) ................T........G......A.T..G..........T...................T.....G..A...................T...........A.................G....C......G..........................C....A...............................GG.............G. 20 19 , 20 19 214:>KF790138,A/North Carolina/02/2013(H3N2) 215 >KF789615,A/Oklahoma/06/2013(H3N2) ................T........G......A.T...........A.T...................T.....G..A...................T...........A.................G....C......G..........................C....A...............................GG............GG. 20 20 , 20 20 215:>KF789615,A/Oklahoma/06/2013(H3N2) 216 >KF790019,A/New Mexico/08/2013(H3N2) ................T........G......A.T.............T...................T.....G..A...................T...........A.................G....C......G..........................C....A...............................GG............GG. 21 19 , 21 19 216:>KF790019,A/New Mexico/08/2013(H3N2) 217 >KF790398,A/District Of Columbia/01/2013(H3N2) ................T........G......A.T.............T...................T.....G..A...................T...........A.................G...........G.........................CC....A...............................GG.............G. 20 18 , 20 18 217:>KF790398,A/District Of Columbia/01/2013(H3N2) 218 >KF789571,A/Alabama/07/2013(H3N2) ................T........G...C..A.T.........C...T...................T.....G..A...................T.....A.....A.................G...........G.....G.G.T................C....A.A............................AGG...........A.G. 26 26 , 26 26 218:>KF789571,A/Alabama/07/2013(H3N2) 219 >KF789550,A/Nevada/04/2013(H3N2) ................T........G...C..A.T.........C...T...................T.....G..A...................T.....A.....A.........C.......G...........G.....G...T................C....A.A............................AGG...........A.G. 30 26 , 30 26 219:>KF789550,A/Nevada/04/2013(H3N2) 220 >KF789579,A/Indiana/164/2012(H3N2) ................T........G...C..A.T.............T...................T.....G..A...................T.....A.....A.........G.......G...........G.....G...T................C....A.A......................A.....AGG...........A.G. 26 26 , 26 26 220:>KF789579,A/Indiana/164/2012(H3N2) 221 >KF790244,A/Indiana/162/2012(H3N2) ................T........G...C..A.T.............T...................T.....G..A...................T.....A.....A.........G.......G...........G.....G...T................C....A.A......................A.....AGG...........A.G. 28 26 , 28 26 221:>KF790244,A/Indiana/162/2012(H3N2) 222 >KF790205,A/Colorado/18/2012(H3N2) ..........T.....T........G...C..A.T.............T...................T.....G..A.............T.....T.....A.....A.................G...........G.........T................C....A...............A..............AGG...........A.G. 26 25 , 26 25 222:>KF790205,A/Colorado/18/2012(H3N2) 223 >KF790104,A/Colorado/18/2012(H3N2) ..........T.....T........G...C..A.T.............T...................T.....G..A...................T.....A.....A.................G...........G.........T................C....A...............A..............AGG...........A.G. 24 24 , 24 24 223:>KF790104,A/Colorado/18/2012(H3N2) 224 >KF789582,A/North Carolina/24/2012(H3N2) ................T........G...C..A.T.............T...................T.....G..A...................T.....A.....A.................G...........G..........................C....A..............................AGG.............G. 22 20 , 22 20 224:>KF789582,A/North Carolina/24/2012(H3N2) 225 >KF790452,A/South Dakota/01/2013(H3N2) ..A.............T........G......A.T.......T.....T...................T.....G..A..........A........T.....A.....A.................G...........G..........................C....A.........T....................AGG...T......A..GA 26 26 , 26 26 225:>KF790452,A/South Dakota/01/2013(H3N2) 226 >KF789923,A/North Dakota/08/2012(H3N2) ..A.............T........G......A.T.......T.....T...................T.....G..A..........A........T.....A.....A.................G...........G..........................C....A.........T....................AGG...T..........A 25 24 , 25 24 226:>KF789923,A/North Dakota/08/2012(H3N2) 227 >KF790135,A/New York/03/2013(H3N2) ................T........G......A.T.......T.....T...................T.....G..A..........A........T.....A.....A.................G...........G..........................C....A.........T....................AGG...T........... 22 22 , 22 22 227:>KF790135,A/New York/03/2013(H3N2) 228 >KF789769,A/Ohio/102/2012(H3N2) ................T........G......A.T.......T.....T...................T.....G..A..........A........T.....A.....A.................G...........G..........................C....A.........T....................AGG...T.........G. 24 23 , 24 23 228:>KF789769,A/Ohio/102/2012(H3N2) 229 >KF789546,A/California/13/2013(H3N2) ................T........G......A.T.......T.....T...................T.....G..A..........A........T.....A.....A.................G...........G..........................C....A.........T....................AG....T.........G. 22 22 , 22 22 229:>KF789546,A/California/13/2013(H3N2) 230 >KF789689,A/Nebraska/11/2012(H3N2) ................T........G......A.T.......T.....T...................T.....G..A..........A........T.....A.....A.................G...........G..........................C....A.........T....................AGG...T.........G. 23 23 , 23 23 230:>KF789689,A/Nebraska/11/2012(H3N2) 231 >KF789722,A/Ohio/97/2012(H3N2) ................T........G......A.T.......T.....T...................T.....G..A..........A........T.....A.....A.....A...........G...........G..........................C....A.........T....................AGG...T.........G. 25 24 , 25 24 231:>KF789722,A/Ohio/97/2012(H3N2) 232 >KF789709,A/Missouri/04/2013(H3N2) ................T........G......A.T.......T.....T...................T.....G..A..........A........T.....A.....A.....A...........G...........G..........................C....A.........T....................AGG...T.........G. 24 24 , 24 24 232:>KF789709,A/Missouri/04/2013(H3N2) 233 >KF789605,A/West Virginia/20/2012(H3N2) ................T........G......A.T.......T.....T...................T.....G..A..........A........T.....A.....A.....A...........G...........G..........................C....A.........T.C..................AGG...T.........G. 25 25 , 25 25 233:>KF789605,A/West Virginia/20/2012(H3N2) 234 >KF790125,A/Missouri/04/2013(H3N2) ................T........G......A.T.......T.....T...................TT....G..A..........A......C.T.....A.....A.....A...........G...........G..........................C....A.........T....................AGG...T.........G. 26 26 , 26 26 234:>KF790125,A/Missouri/04/2013(H3N2) 235 >KF789728,A/North Carolina/05/2013(H3N2) ................T........G......A.T.......T.....T...................TT....G..A..........A........T.....A.....AG................G...........G...............A..........C....A.........T....................AGG...T.........G. 29 26 , 29 26 235:>KF789728,A/North Carolina/05/2013(H3N2) 236 >KF790323,A/New Mexico/23/2012(H3N2) ................T........G......A.T.......T.....T...................T.....G..A..........A........T.....A.....AG................G...........G..........................C....A.........T....................AGG...T.........G. 26 24 , 26 24 236:>KF790323,A/New Mexico/23/2012(H3N2) 237 >KF790190,A/Michigan/25/2012(H3N2) ................T........G......A.T.......T.....T...................T.....G..A..........A........T.....A.....AG................G...........G..........................C....A.........T....................AGG...T.........G. 24 24 , 24 24 237:>KF790190,A/Michigan/25/2012(H3N2) 238 >KF789732,A/Vermont/19/2012(H3N2) ................T........G......A.T.......T.....T...................T.....G..A..........A........T.....A.....A.................G...........G..........................C....A.........T....................AGG...T.........G. 23 23 , 23 23 238:>KF789732,A/Vermont/19/2012(H3N2) 239 >KF789646,A/Idaho/02/2013(H3N2) ................T........G......A.T.......T.....T..............A....T.....G..A..........A........T.....A.....A.................G...........G..........................C....A.........T....................AGG...T.........G. 25 24 , 25 24 239:>KF789646,A/Idaho/02/2013(H3N2) 240 >KF790054,A/California/46/2012(H3N2) ................T........G......A.T.......T.....T...................T.....G..A..........A........T.....A.....A.................G...........G..........................C....A.........T....................AGG...T.........G. 23 23 , 23 23 240:>KF790054,A/California/46/2012(H3N2) 241 >KF790454,A/Nevada/02/2013(H3N2) ................T........G......A.T.......T.....T...................T.....G..A..........A........T.....A.....A.................G...........G..........................C....A.........T....................AGG...T.........G. 25 23 , 25 23 241:>KF790454,A/Nevada/02/2013(H3N2) 242 >KF789953,A/Ohio/01/2013(H3N2) ................T........G......A.T.......T.....T...................T.....G..A..........A........T.....A.....A.................G...........G..........................C....A.........T....................AGG...T.........G. 23 23 , 23 23 242:>KF789953,A/Ohio/01/2013(H3N2) 243 >KF790509,A/California/11/2013(H3N2) ................T........G......A.T.......T.....T...................T.....G..A..........A........T...C.A.....A.................G...........G..........................C....A.........T....................AGG...T.........G. 26 24 , 26 24 243:>KF790509,A/California/11/2013(H3N2) 244 >KF790213,A/Iowa/13/2012(H3N2) ................T........G......A.T.......T.....T...................T.....G..A..........A........T.....A.....A.................G...........G..........................C....A.........T....................AGG...T.........G. 23 23 , 23 23 244:>KF790213,A/Iowa/13/2012(H3N2) 245 >KF790512,A/Idaho/01/2013(H3N2) ................T........G......A.T.......T.....T...................T.....G..A..........A........T.....A.....A.................G...........G..........................C....A.........T....................AGG.T.T.........G. 25 24 , 25 24 245:>KF790512,A/Idaho/01/2013(H3N2) 246 >KF789826,A/Washington/62/2012(H3N2) ................T........G......A.T.......T.....T...................T.....G..A..........A........T.....A.....A.................G...........G..........................C....A.........T....................AGG...T.........G. 23 23 , 23 23 246:>KF789826,A/Washington/62/2012(H3N2) 247 >KF790446,A/Wyoming/20/2012(H3N2) ................T........G......A.T.......T.....T...................T.....G..A..........A........T.....A.....A.................G.....A.....G..........................C....A.........T....................AGG...T.........G. 24 24 , 24 24 247:>KF790446,A/Wyoming/20/2012(H3N2) 248 >KF789775,A/South Dakota/12/2012(H3N2) ................T........G......A.T.......T.....T...................T.....G..A..........A........T.....A.....A.................G.....A.....G..........................C....A.........T....................AGG...T.........G. 24 24 , 24 24 248:>KF789775,A/South Dakota/12/2012(H3N2) 249 >KF789688,A/South Dakota/10/2012(H3N2) ................T........G......A.T.......T.....T...................T.....G..A..........A........T.....A.....A.................G.....A.....G..........................C....A.........T....................AGG...T.........G. 24 24 , 24 24 249:>KF789688,A/South Dakota/10/2012(H3N2) 250 >KF789791,A/South Dakota/14/2012(H3N2) ................T........G......A.T.......T.....T...................T.....G..A..........A........T.....A.....A.................G.....A.....G..........................C....A.........T....................AGG...T.........G. 24 24 , 24 24 250:>KF789791,A/South Dakota/14/2012(H3N2) 251 >KF789794,A/South Dakota/12/2012(H3N2) ................T........G......A.T.......T.....T...................T.....G..A..........A..T.....T.....A.....A........G........G.....A.....G..........................C....A.........T....................AGG...T.........G. 26 26 , 26 26 251:>KF789794,A/South Dakota/12/2012(H3N2) 252 >KF790051,A/South Dakota/15/2012(H3N2) ................T........G......A.T.......T.....T...................T........A..........A..T.....T.....AA....A.................G.....A.....G..........................C....A.........T....................AGG...T.........G. 25 25 , 25 25 252:>KF790051,A/South Dakota/15/2012(H3N2) 253 >KF790373,A/Ohio/01/2013(H3N2) ................T........G......A.T.......T.....T...................T.....G..A.A........A..T.....T.....A.....A.......M.........G...........G..........................C....A.........T....................AGG...T.........G. 26 26 , 26 26 253:>KF790373,A/Ohio/01/2013(H3N2) 254 >KF790009,A/South Dakota/16/2012(H3N2) ................T........G......A.T.......T.....T...................T.....G..A.M........A..T.R...T.....A.....A........R........G...........G..........................C....A.........T....................AGG...T.........G. 27 27 , 27 27 254:>KF790009,A/South Dakota/16/2012(H3N2) 255 >KF790141,A/Georgia/03/2013(H3N2) ................T........G......A.T.............T...................T.....G..A.............T.....T.....A.A...A........M........G...........G..C.......................C....A.................A........A...AGG.............G. 25 25 , 25 25 255:>KF790141,A/Georgia/03/2013(H3N2) 256 >KF789884,A/Georgia/03/2013(H3N2) ................T........G......A.T.............T...................T.....G..A...................T.....A.A...A.................G...........G..C.......................C....A.................A........A...AGG.............G. 23 23 , 23 23 256:>KF789884,A/Georgia/03/2013(H3N2) 257 >KF790115,A/Kansas/04/2013(H3N2) ................T........G......A.T.............T...................T.....G..A..............A....T.....A.....AR................G...........G..C........A.A............C....A........................T.A...AGG.............G. 28 26 , 28 26 257:>KF790115,A/Kansas/04/2013(H3N2) 258 >KF790023,A/New Mexico/09/2013(H3N2) ................T........G......A.T.............T...................T.....G..A..............A....T.....A.....AG................G...........G..........................C....A..........................A...AGG.............G. 22 22 , 22 22 258:>KF790023,A/New Mexico/09/2013(H3N2) 259 >KF790333,A/District Of Columbia/01/2012(H3N2) ................T........G......A.T.............T...................T........A............A......T.....A.....A.................G...........G..........A.........C.....C....A.........................GA...AGG..A..........G. 25 24 , 25 24 259:>KF790333,A/District Of Columbia/01/2012(H3N2) 260 >KF789759,A/Nevada/28/2012(H3N2) ................T........G......A.T.....T.......T...................T.....G..AC...........A......T.....A.....A...............C.G...........G..........A.......A.C....CC....A.........................GA...AGG..A..........G. 31 30 , 31 30 260:>KF789759,A/Nevada/28/2012(H3N2) 261 >KF790455,A/California/10/2013(H3N2) ................T........G......A.T.....T.......T...................T.....G..A............A......T.....A.....A......G..........G...........G........C.A.........C.....C....A.........................GA...AGG..A..........G. 30 28 , 30 28 261:>KF790455,A/California/10/2013(H3N2) 262 >KF790066,A/Colorado/01/2013(H3N2) ................T........G......A.T.....T.......T...................T.....G..A............A......T.....A.....A.....A...........G...........G..........A.........C.....C....A.........................GA...AGG..A..........G. 27 27 , 27 27 262:>KF790066,A/Colorado/01/2013(H3N2) 263 >KF789716,A/Colorado/21/2012(H3N2) ................T........G......A.T.....T.......T...................T.....G.GA............A......T.....A.....AR....A...........G...........G..........A.........C.....C....A...............A..........A...AGG.............G. 28 28 , 28 28 263:>KF789716,A/Colorado/21/2012(H3N2) 264 >KF789812,A/Illinois/15/2012(H3N2) ................T........G......A.T.....T.......T...................T.....G..A............A......T.....A.....AG................G...........G..........A.........C.....C....A..........................A...AGG.............G. 25 25 , 25 25 264:>KF789812,A/Illinois/15/2012(H3N2) 265 >KF790230,A/North Dakota/05/2012(H3N2) ................T........G......A.T.....T.......T...................T.....G..A............A......T.....A.....AG................G...........G..........A.........C.....C....A..........................A...AGG............... 24 24 , 24 24 265:>KF790230,A/North Dakota/05/2012(H3N2) 266 >KF789640,A/Vermont/02/2013(H3N2) ................T........G......A.T.....T.......T...................T.....G..A............A......T.....A.....A.................G...........G..........A.........C.....C....A..........................A...AGG.............G. 24 24 , 24 24 266:>KF789640,A/Vermont/02/2013(H3N2) 267 >KF790368,A/Ohio/92/2012(H3N2) ................T........G......A.T.....T.......T.......A...........T.....G..A............A......T.....A.....A..........A......G...........G..........A.........C.....C....A..........................A...AGG.............G. 26 26 , 26 26 267:>KF790368,A/Ohio/92/2012(H3N2) 268 >KF789656,A/Oregon/01/2013(H3N2) ................T........G......A.T.....T.......T...................T.....G..A............A......T.....A.....A.................G...........G..........A.........C.....C....A..........................A...AGG.............G. 24 24 , 24 24 268:>KF789656,A/Oregon/01/2013(H3N2) 269 >KF790028,A/Michigan/03/2013(H3N2) ................T........G......A.T.....T.......T...................T..G..G..A............A......T.....A.....A.................G...........G..........A.........C.....C....A..........................A...AGG.............G. 26 25 , 26 25 269:>KF790028,A/Michigan/03/2013(H3N2) 270 >KF789740,A/Minnesota/03/2013(H3N2) ................T........G......A.T.....T.......T..........G........T.....G..A............A......T.....A.....A.................G...........G..........A.........C..C..C....A..........................A...AGG.............G. 26 26 , 26 26 270:>KF789740,A/Minnesota/03/2013(H3N2) 271 >KF790473,A/New Mexico/04/2013(H3N2) ................TT.......G......A.T.....T.......T...................T.....G..A............A......T.....A.....A.................G...........G..........A.........C.....C....A..........................A...AGG.............G. 26 25 , 26 25 271:>KF790473,A/New Mexico/04/2013(H3N2) 272 >KF789628,A/Kansas/02/2013(H3N2) ................T........G......A.T.....T.......T...................T.....G..A.......T....A......T.....A.....A.................G...........G..........A.........C.....C....A..........................A...AGG.............G. 26 25 , 26 25 272:>KF789628,A/Kansas/02/2013(H3N2) 273 >KF789952,A/Illinois/01/2013(H3N2) ................T........G......A.T.....T.......T...................T.....G..A............A......T.....A.....A.................G...........G..........A.........C.....C....A..........................A...AGG.............G. 26 24 , 26 24 273:>KF789952,A/Illinois/01/2013(H3N2) 274 >KF790357,A/Mississippi/01/2013(H3N2) ................T........G......A.T.....T.......T......A............T.....G..A............A......T.....A.....A.................G...........G..........A.........C.....C....A..........................A...AGG.............G. 25 25 , 25 25 274:>KF790357,A/Mississippi/01/2013(H3N2) 275 >KF790334,A/Pennsylvania/02/2013(H3N2) ................T........G......A.T.....T.......T...................T.....G..A.....G......A......T.....A.....A.................G...........G..........A.........C.....C....A..........................A...AGG.............G. 25 25 , 25 25 275:>KF790334,A/Pennsylvania/02/2013(H3N2) 276 >KF790478,A/Louisiana/01/2013(H3N2) ................T........G......A.T.....T.......T...................T.....G..A............A......T.....A.....A.................G...........G..........A.........C.....C....A..........................A...AGG.............G. 25 24 , 25 24 276:>KF790478,A/Louisiana/01/2013(H3N2) 277 >KF789906,A/California/14/2013(H3N2) ................T........G......A.T.....T.......T...................T.....G..A............A......T.....A.....A.................G...........G.G........A.........C.....C....A..........................A...AGG.............G. 25 25 , 25 25 277:>KF789906,A/California/14/2013(H3N2) 278 >KF790439,A/Wisconsin/41/2012(H3N2) ................T........G.....AA.T.....T.......T...................T.....G..A............A......T.....A.....A.................G...........G..........A.........C.....C....A..........................A...AGG.............G. 25 25 , 25 25 278:>KF790439,A/Wisconsin/41/2012(H3N2) 279 >KF790413,A/Wisconsin/05/2013(H3N2) ................T........G.....AA.T.....T.......T...................T.....G..A............A......T.....A.....A.................G...........G..........A.........C.....C....A..........................A...AGG.............G. 26 25 , 26 25 279:>KF790413,A/Wisconsin/05/2013(H3N2) 280 >KF789673,A/Missouri/13/2012(H3N2) ................T........G.....AA.T.....T.......T...................T.....G..A............A......T.....A.....A.................G...........G..........A.........C.....C....A..........................A...AGG.............G. 25 25 , 25 25 280:>KF789673,A/Missouri/13/2012(H3N2) 281 >KF789619,A/Connecticut/01/2013(H3N2) ................T........G......A.T.....T.......T...................T.....G..A......A.....A......T.....A.....A.................G...........G..........A.........C.....C....A..........................A...AGG.............G. 25 25 , 25 25 281:>KF789619,A/Connecticut/01/2013(H3N2) 282 >KF790160,A/Wisconsin/38/2012(H3N2) ................T........G......A.T.....T.......T...................T.....G..A............A......T.....A.....A.................G...........G..........A.........C.....C....A..........................A...AGG.............G. 24 24 , 24 24 282:>KF790160,A/Wisconsin/38/2012(H3N2) 283 >KF789977,A/Oregon/01/2013(H3N2) ................T........G......A.T.....T.......T...................TT....G..A............A....C.T.....A.....A.................G...........G..........A.........C.....C....A..........................A...AGG.............G. 26 26 , 26 26 283:>KF789977,A/Oregon/01/2013(H3N2) 284 >KF790041,A/Kansas/01/2013(H3N2) ................T........G......A.T.....T.......T...................T.....G..A............A......T.....A.....A.................G...........G..........A.........C.....C....A..........................A...AGG.............G. 24 24 , 24 24 284:>KF790041,A/Kansas/01/2013(H3N2) 285 >KF789633,A/Louisiana/02/2013(H3N2) ................T........G......A.T.....T.......T...................T.....G..A............A......T.....A.....A.................G...........G..........A.........C.....C....A..........................A...AGG..........T..G. 25 25 , 25 25 285:>KF789633,A/Louisiana/02/2013(H3N2) 286 >KF789741,A/Tennessee/02/2013(H3N2) ................T........G......A.T.....T.......T...................T.....G..A............A......T.....A.....A.................G...........G..........A.........C.....C....A..........................A...AGG.............G. 24 24 , 24 24 286:>KF789741,A/Tennessee/02/2013(H3N2) 287 >KF789885,A/Maine/11/2012(H3N2) ................T........G......A.T.....T.......T...................T.....G..A...................T.....A.....A.T...............G...........G..........A.G.......C.....C....A..........................A...AGG.............G. 25 25 , 25 25 287:>KF789885,A/Maine/11/2012(H3N2) 288 >KF789650,A/Mississippi/02/2013(H3N2) ................T........G......A.T.....T.......T...................T.....G..A...................T.....A.....A.T...............G...........G..........A.G.......C.....C....A..........................A...AGG.............G. 25 25 , 25 25 288:>KF789650,A/Mississippi/02/2013(H3N2) 289 >KF790517,A/California/12/2013(H3N2) C...............T........G......A.T.....T.......T...................T.....G..A...................T.....A.....A.T...............G...........G..........A.G.......C.....C....A..........................A...AGG.............G. 26 26 , 26 26 289:>KF790517,A/California/12/2013(H3N2) 290 >KF789787,A/Michigan/32/2012(H3N2) ................T........G......A.T.....T.......T...................T.....G..A...................T.....A.....A.T...............G...........G..........A.G.......C.....C....A..........................A...AGG.............G. 25 25 , 25 25 290:>KF789787,A/Michigan/32/2012(H3N2) 291 >KF790155,A/Minnesota/05/2013(H3N2) ................T........G......A.T..G..........T...................T.....G..A...................T.....A.....A.................G..........AG..........................C....A..........................A...AGG.............G. 25 22 , 25 22 291:>KF790155,A/Minnesota/05/2013(H3N2) 292 >KF789739,A/California/22/2013(H3N2) ................T........G......A.T.............TC..................T.....G..A.....G.............T.....A.....A.................G...........G.................T........C....A.......................T..A...AGG.............G. 24 24 , 24 24 292:>KF789739,A/California/22/2013(H3N2) 293 >KF790391,A/Alaska/04/2013(H3N2) ................T........G......A.T.............T...................T.....G..A...................T.....A.....A.................G...........G..........................C....A..........................A...AGG.............G. 22 20 , 22 20 293:>KF790391,A/Alaska/04/2013(H3N2) 294 >KF790036,A/Nevada/05/2013(H3N2) ................T........G......A.T.............T...................T.....G..A...................T.....A.....A.................G...........G..........................C....A..........................A...AGG.............G. 20 20 , 20 20 294:>KF790036,A/Nevada/05/2013(H3N2) 295 >KF790500,A/Kansas/11/2012(H3N2) ................T........G......A.T.............T.......A...........T.....G..A...................T.....A.....A.................G...........G..........................C....A..........................A...AGG.............G. 22 21 , 22 21 295:>KF790500,A/Kansas/11/2012(H3N2) 296 >KF790100,A/Wyoming/18/2012(H3N2) ................T........G......A.T.............T...A...............T.....G..A...................T...........A.................G...........G..........................C....A..................A............GG.............G. 21 19 , 21 19 296:>KF790100,A/Wyoming/18/2012(H3N2) 297 >KF789667,A/Maryland/30/2012(H3N2) ................T........G......A.T.................................T.....G..A..............T....T.....T.....A..T..............G...........G..........................C....A..................A.....................G.....G. 20 19 , 20 19 297:>KF789667,A/Maryland/30/2012(H3N2) 298 >KF790432,A/Oregon/11/2012(H3N2) ....T...........T........G......A.T.................................T.....G..A...................T.....T.....A..T..............G...........G..........................C....A..................A.....................G.....G. 21 19 , 21 19 298:>KF790432,A/Oregon/11/2012(H3N2) 299 >KF790229,A/Oklahoma/05/2012(H3N2) ....T...........T........G......A.T.................................T.....G..A...................T.....T.....A..T..............G...........G..........................C....A..................A.....................G.....G. 19 19 , 19 19 299:>KF790229,A/Oklahoma/05/2012(H3N2) 300 >A/Czech Republic/121/2012,2012/03/06,Czech Republic ................T........G......A.T......C.....................A....T........A...................T...........A.T...............G...........G..........................C....A..............................................G. 18 16 , 18 16 300:>A/Czech Republic/121/2012,2012/03/06,Czech Republic 301 >KF790228,A/Hawaii/30/2012(H3N2) ........A.......T........G......A.T.................................T........A..C................T........T..A.................G...........G.............A..C.........C...TA..............................................G. 19 19 , 19 19 301:>KF790228,A/Hawaii/30/2012(H3N2) 302 >KF790430,A/Massachusetts/07/2012(H3N2) ........A.......T........G......A.T.................................T........A..C................T........S..AR................G...........G.........T...A..C.........C...TA..............................................G. 23 21 , 23 21 302:>KF790430,A/Massachusetts/07/2012(H3N2) 303 >KF790502,A/Pennsylvania/21/2012(H3N2) ........A.......T........G......A.T.................................T........A..C................T...........A.................G..C........G.........T...A..C.........C...TA..............................................G. 20 20 , 20 20 303:>KF790502,A/Pennsylvania/21/2012(H3N2) 304 >KF790461,A/New Mexico/03/2013(H3N2) ........A.......T........G......A.T.................................T........A..C................T.........Y.A.................G..C........G.........T...A..C.........C...TA..............................................G. 23 21 , 23 21 304:>KF790461,A/New Mexico/03/2013(H3N2) 305 >KF790262,A/New Hampshire/12/2012(H3N2) ........A.......T........G......A.T.................................T........A..C................T...........A.................G..C........G.........T...A..C.........C...TA..............................................G. 20 20 , 20 20 305:>KF790262,A/New Hampshire/12/2012(H3N2) 306 >KF789668,A/New Hampshire/11/2012(H3N2) ........A.......T........G......A.T.................................T........A..C................T...........A.................G...........G.........T...A..C.........C...TA..............................................G. 19 19 , 19 19 306:>KF789668,A/New Hampshire/11/2012(H3N2) 307 >KF790236,A/New York/38/2012(H3N2) ........A.......T........G......A.T.................................T........A..C..............C.T...........A.................G...........G.........T...A..C.........C...TA..............................................G. 20 20 , 20 20 307:>KF790236,A/New York/38/2012(H3N2) 308 >KF789870,A/New Hampshire/11/2012(H3N2) ........A.......T........G......A.T.................................T........A..C..............C.T...........A.................G...........G.........T...A..C.........C...TA..............................................G. 20 20 , 20 20 308:>KF789870,A/New Hampshire/11/2012(H3N2) 309 >KF790282,A/New York/38/2012(H3N2) ........A.......T........G......A.T.................................T........A..C................T...........A.................G...........G.........T...A..C.........C...TA..............................................G. 19 19 , 19 19 309:>KF790282,A/New York/38/2012(H3N2) 310 >KF789989,A/Hawaii/26/2012(H3N2) ........A.......T........G......A.T.................................T........A..C................T...........A.................G...........G.............A..C.........C...TA..............................................G. 18 18 , 18 18 310:>KF789989,A/Hawaii/26/2012(H3N2) 311 >KF790171,A/Hawaii/28/2012(H3N2) ........A.......T........G......A.T.................................T........A..C................T...........A.................G...........G.............A..C.........C...TA..............................................G. 19 18 , 19 18 311:>KF790171,A/Hawaii/28/2012(H3N2) 312 >KF789941,A/Hawaii/45/2012(H3N2) ........A.......T........G......A.T.................................T........A..C................T...........A.................G...........G.............A..C.........C...TA..............................................G. 18 18 , 18 18 312:>KF789941,A/Hawaii/45/2012(H3N2) 313 >KF790223,A/Hawaii/29/2012(H3N2) ........A.......T........G......A.T.................................T........A..C................T...........A.................G...........G.............A..C.........C...TA..............................................G. 19 18 , 19 18 313:>KF790223,A/Hawaii/29/2012(H3N2) 314 >KF789927,A/California/49/2012(H3N2) ........A.......T........G......A.T.................................T........A..C................T...........A.................G...........G.............A..C.........C...TA..............................................G. 18 18 , 18 18 314:>KF789927,A/California/49/2012(H3N2) 315 >KF789990,A/Hawaii/25/2012(H3N2) ........A.......T........G......A.T...........................G.....T........A..C................T...........A.................G...........G.............A..C.........C...TA..............................................G. 19 19 , 19 19 315:>KF789990,A/Hawaii/25/2012(H3N2) 316 >KF789993,A/Hawaii/25/2012(H3N2) ........A.......T........G......A.T...........................G.....T........A..C..........T.....T......T....A.................G...........G.............A..C.........C...TA..............................................G. 21 21 , 21 21 316:>KF789993,A/Hawaii/25/2012(H3N2) 317 >KF789999,A/Hawaii/26/2012(H3N2) ........A.......T........G......A.T.................................T........A..C..........T.R...T......Y....A.................G...........G.............A..C.........C...TA..............................................G. 21 21 , 21 21 317:>KF789999,A/Hawaii/26/2012(H3N2) 318 >KF789587,A/New Hampshire/16/2012(H3N2) ................T........G......A.T.................................T........A.............T.....T...........A.................G...........G..........................C....A.....T............................T.......T...G. 20 17 , 20 17 318:>KF789587,A/New Hampshire/16/2012(H3N2) 319 >KF789696,A/Maine/05/2012(H3N2) .C...........A..T........G......A.T..........................G......T........A....G..............T...........A.................G...........G..........................C....A.......A...........................A..........G. 21 19 , 21 19 319:>KF789696,A/Maine/05/2012(H3N2) 320 >KC893164,A/Maine/05/2012(H3N2) .C...........A..T........G......A.T..........................G......T........A....G..............T...........A.................G...........G..........................C....A.......A...........................A..........G. 19 19 , 19 19 320:>KC893164,A/Maine/05/2012(H3N2) 321 >KF790394,A/New York/61/2012(H3N2) ......................................C...................................G......................T...........A.............................G.......................C..C.................................A......A..........G. 13 10 , 13 10 321:>KF790394,A/New York/61/2012(H3N2) 322 >KF789877,A/Arkansas/05/2012(H3N2) .............A....A...T............CA................................K...GG.........A...............G........A................A...................................T...............T.A............C......A........G.......... 18 18 , 18 18 322:>KF789877,A/Arkansas/05/2012(H3N2) 323 >KF790184,A/Alaska/23/2012(H3N2) .............A........T.A..........CA..................................G.GG.........A......T........G........A........G.......A.........C................A........T.................A............C......A........G.......... 21 21 , 21 21 323:>KF790184,A/Alaska/23/2012(H3N2) 324 >KF790196,A/Alaska/22/2012(H3N2) .............A........T.A..........CA..................................G.GG.........A...............G........A................A.........C................A........T.................A............C......A........G.......... 20 19 , 20 19 324:>KF790196,A/Alaska/22/2012(H3N2) 325 >KF790195,A/Alaska/23/2012(H3N2) .............A........T.A..........CA..................................G.GG.........A...............G........A................A.........C................A........T.................A............C......A........G.......... 19 19 , 19 19 325:>KF790195,A/Alaska/23/2012(H3N2) 326 >KF789796,A/Alaska/31/2012(H3N2) .............A........T.A..........CA..................................G.GG.........A...............G........A................A.........C................A........T.................A............C......A........G.......... 20 19 , 20 19 326:>KF789796,A/Alaska/31/2012(H3N2) 327 >KF790255,A/Alaska/24/2012(H3N2) .............A........T.A..........CA..................................G.GG.........A...............G........A................A.........C................A........T.................A............C......A........G.......... 19 19 , 19 19 327:>KF790255,A/Alaska/24/2012(H3N2) 328 >KF790238,A/Alaska/24/2012(H3N2) .............A........T.A..........CA..................................G.GG.........A..........C....G........A................A.........C................A........T.................A............C......A........G.......... 20 20 , 20 20 328:>KF790238,A/Alaska/24/2012(H3N2) 329 >KF790216,A/Alaska/22/2012(H3N2) .............A........T.A..........CA..................................G.GG.........A..........C....G........A................A.........C................A........T.................A............C......A........G.......... 20 20 , 20 20 329:>KF790216,A/Alaska/22/2012(H3N2) 330 >KF789606,A/North Dakota/07/2012(H3N2) .............A........T............CA.....T..............................GG...C.....A...............G........A................A...................................T.....A...........A............C......A........G.......... 19 18 , 19 18 330:>KF789606,A/North Dakota/07/2012(H3N2) 331 >KF790370,A/Hawaii/27/2012(H3N2) .............A...........................................................GG.....C...A...............G........A............A...A.............T.......................................A............C......A........G.....T.... 16 15 , 16 15 331:>KF790370,A/Hawaii/27/2012(H3N2) 332 >KF790343,A/Hawaii/27/2012(H3N2) .............A...........................................................GG.....C...A......T........G........A.......M....A...A.............T.......................................A............C......A........G.....T.... 17 17 , 17 17 332:>KF790343,A/Hawaii/27/2012(H3N2) 333 >KF790425,A/Texas/83/2012(H3N2) ........A..C.............................................................GG........................TG........A...........A....A........T............................................A.........AA.C......A................... 16 15 , 16 15 333:>KF790425,A/Texas/83/2012(H3N2) 334 >Index/32g12f1.c2,42-53 ........A..C.............................................................GG........................TG........A...........A....A........T............................................A.........AA.C......A................... 15 15 , 15 15 334:>Index/32g12f1.c2,42-53 335 >KF790187,A/Maryland/32/2012(H3N2) ...........C.............................................................GG........................TG........A................A........T............................................A.........AA.C......A................... 14 13 , 14 13 335:>KF790187,A/Maryland/32/2012(H3N2) 336 >KF790185,A/Louisiana/09/2012(H3N2) ................................A........................................GG.........................G........A................A........T............................................A............C......A................... 15 10 , 15 10 336:>KF790185,A/Louisiana/09/2012(H3N2) 337 >KF790227,A/Maine/08/2012(H3N2) .......................................................................G.GG.........................GC........................A........T............................................A...........TC......A................... 17 11 , 17 11 337:>KF790227,A/Maine/08/2012(H3N2) ---Index----------------------------------------------------TTGAAATCGTCTACTACGGTGACACAATTTGGGTCTGATGCTCCTTGCCTCGCTTGGGACGAAGCAACCGAAGAATAGTCTAAAGCTAGAGGGGTTAGTGATCGCTCCAGACCAAGAAATCGGGCTCTACTCAGCCTTGACATACATATCGGAGCGTAGATCATGTAGGACCAGTATCGCGCTTCACGTGGGCTCCGACAGCGAAGCGGAGTATCCCAAG -codon-position--------------------------------------------- 11 1 1 11 1 1 2 212 12 2 111 11 212 1 1 1212 2 2 2 122 111 2 2 12 11 1 12 122 2 2 21 1 1 1 2 2 1 1 1 1 1 2 12 2 0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000011111111111111111111111111111111111111111111111111111111111111111111111111111 0000000000000000000001111111111111112222222222222233333333334444444444444444455555555555556666666666666677777777777777788888888888999999999999900000000000111111111111122222222223333333333334444444444455555555555666666666 0122233334445557778990334445667888990011223477888901124556990111233456677789900111234466990001223448889900011122336668812333477889013456777889900111345888011123566799901345567892234456667891123445789900112455677112356778 9812836793582570284368594676251027155609287069125130685784035389005760823822814689870314163596399032790345904516262584569037303271359446258383459147276037103551867314508654795160384732351923687398451479384547958344732013
NA from H3N2, USA 2012f , all states
Code:000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111 000000000000000000000000001111111111111111111111111122222222222222222222222222222222222233333333333333333333333344444444444444444444444444444555555555555555555566666666666666666666666666666777777777777777777777777788888888888888888888899999999999999999999999999990000000000000000000000000000000011111111111111111111111111111122222222222222222222222222333333333333333334444 011223345555667777888889990111122223345566677777788900000111112222233333344445566777788800011222333445677777888900012222334445555566667778889000011112444557888900111223334456666666777889999000111223344445556678888900122344445556667889900002233333334444566888999990000011112222233334445567788999900000111122344555666677888899900001223333444466777778999000013344556889990000 626578951789261278245783563178916790574658902457805202467036791235912457901245647038935803625147169686925689034926870679891361236934891246798145703692369259589139235790363780134569258140369058124032814572360370367229858706790271480781803671404567892359109136123560346812560367905781470921806257801467036918712578014845125827934798150369057803256891016245810547379360582356 -codon-position----------------------------------------------------------------- 11 2 122 2 2 1 1 1 2 1 121 1 1 1 121 1 1 2 21 2 1 2 1 1 1 1 2 121 1 2 1 1 1 2 1 122 1 1 1 2212 12 1 1 1 1 1 1 2 121 1 12 1 1 1 2 11 1 122 1 1 2 1 2 1 1 12 12 1 1 2212 2 1121 112 1 1 2 1 2 2 2 2 12 2 2 1122 1 2 11 1 1 2 1 1 1 2 1 11 1 1212 ---Index------------------------------------------------------------------------TTAAGTTCTAATGCTGTTACTGATCTTCATAGCACTCACGAAATAAGAAATGACGCCCCCAAAGAGAATCCCAACTGAAAGGAACAAATTGTGGTCGGCGGAACTCTGAAGCTCGAACGGTGCCTGATGCTAGACCAGTATTTCGGCGAGATTCTTGGGTATCTCGGGTAATAAGAATCCGCGGACTTCAATTAAAGGTAAAAATTACGGACGTTGACGCCTCATTGCAGCAACAGCCGAGTATTGTTCATGGAAAAAAGCCCAAGCTTTGATCTGAGTGTTAGACTAGGGAGTCGCGAGACAGACCGACCTAGCTATGGACGCGTAAGTTACTTAGAGCGCGGTGAAAAGTAACGGGCCTTTGGATCCCAT 1 >Index/USA-2007 .................................................................................................................................................................................................................................................................................................................................................................................... 0 0 , 0 0 1:>Index/USA-2007 2 >Index/Brisbane-like/2007 .................................................................................................................................................................................................................................................................................................................................................................................... 0 0 , 0 0 2:>Index/Brisbane-like/2007 3 >Index/2009/Egypt/Iowa ................CC..C.........G..........................................................................................A............T...................................G................................................................................................................................A................................................G....................... 9 9 , 9 9 3:>Index/2009/Egypt/Iowa 4 >Index/Perth-like/2009 .......................................................................................G...............................A.A................................................G..............................................................A..........................................G.....G......................................................................................... 7 7 , 7 7 4:>Index/Perth-like/2009 5 >KF765552,A/Texas/90/2009(H3N2))6 neuraminidase (NA) gene .......................................................................................G...............................A.A................................................G..............................................................A.............C............................G.....G......................................................................................... 8 8 , 8 8 5:>KF765552,A/Texas/90/2009(H3N2))6 neuraminidase (NA) gene 6 >2007/02/06,14278,AUS,A/Brisbane/10/07 ...................................................................................................................................................................................................................................................C........................................................G....................................................................... 2 2 , 2 2 6:>2007/02/06,14278,AUS,A/Brisbane/10/07 7 >KF790044,A/Alaska/02/2013(H3N2))6 neuraminidase (NA) gene .C................................T...................A............G.......C......G............A...............T.........A.Y.R......................GR....................G............A..................................AT................T.............G...........A..............A........C........A..C..T..................G.....G....................T.................C...... 29 29 , 29 29 7:>KF790044,A/Alaska/02/2013(H3N2))6 neuraminidase (NA) gene 8 >KF790047,A/Alaska/02/2013(H3N2))6 neuraminidase (NA) gene .C................................T...................A............G.......C......G............A...............T.........A..........................G.....................G............A..................................AT................T.............G...........A..............A........C........A..C..T..................G.....G....................T.................C...... 26 26 , 26 26 8:>KF790047,A/Alaska/02/2013(H3N2))6 neuraminidase (NA) gene 9 >KF790218,A/South Carolina/16/2012(H3N2))6 neuraminidase (NA) gene ..................................T...................A....................C......G............................T.........A....R...........................................G............A...................................T................T.............G...........A.......................C........A..C..T..................G.....G....................T.................C...... 21 21 , 21 21 9:>KF790218,A/South Carolina/16/2012(H3N2))6 neuraminidase (NA) gene 10 >KF789813,A/Georgia/22/2012(H3N2))6 neuraminidase (NA) gene ..................................T...................A....................C......G............................T.........A....G...........................................G............A...................................T................T.............G...........A.......................C........A..C..T..................G.....G....................T.................C...... 21 21 , 21 21 10:>KF789813,A/Georgia/22/2012(H3N2))6 neuraminidase (NA) gene 11 >KF789545,A/California/55/2012(H3N2))6 neuraminidase (NA) gene ..................................T...................A....................C......G............................T.........A.Y..............................................G............A...................................T................T.............G...........A..........T............C........A..C..T..................G.....G....................T.................C...... 22 22 , 22 22 11:>KF789545,A/California/55/2012(H3N2))6 neuraminidase (NA) gene 12 >KF789934,A/Florida/01/2013(H3N2))6 neuraminidase (NA) gene ..................................T...................A....................C......G............................T.........A.T............................................G.G............A...................................T................T.............G...........A.......................C........A..C..T..................G.....G....................T.................C...... 22 22 , 22 22 12:>KF789934,A/Florida/01/2013(H3N2))6 neuraminidase (NA) gene 13 >KF790272,A/Nevada/26/2012(H3N2))6 neuraminidase (NA) gene ...............................A......................A....................C......G............................T.........A................C...............................G............A...................................T................T.............G...........A.......................C........A..C..T..................G.....G....................T.................C...... 21 21 , 21 21 13:>KF790272,A/Nevada/26/2012(H3N2))6 neuraminidase (NA) gene 14 >Index/32g12f1.c2,55-62 ......................................................A....................C......G............................T.........A................................................G................................................T................T.............G...................................C........A..C..T..................G.....G....................T.................C...... 17 17 , 17 17 14:>Index/32g12f1.c2,55-62 15 >KF790086,A/Delaware/23/2012(H3N2))6 neuraminidase (NA) gene ....T.................................................A....................C......G............................T.........A...R............................................G................................................T...........G....T.............G................................R..C........A..C..T..................G.....G....................T.................C...... 21 21 , 21 21 15:>KF790086,A/Delaware/23/2012(H3N2))6 neuraminidase (NA) gene 16 >KF790068,A/Delaware/23/2012(H3N2))6 neuraminidase (NA) gene ....T.................................................A....................C......G............................T.........A................................................G................................................T...........G....T.............G...................................C........A..C..T..................G.....G....................T.................C...... 19 19 , 19 19 16:>KF790068,A/Delaware/23/2012(H3N2))6 neuraminidase (NA) gene 17 >KF789580,A/Colorado/20/2012(H3N2))6 neuraminidase (NA) gene ..................G...................................A....................C..G...G............................T.........A................................................G................................................T................T.............G...................................C........A..C..T..................G.....G....................T.................C...... 19 19 , 19 19 17:>KF789580,A/Colorado/20/2012(H3N2))6 neuraminidase (NA) gene 18 >KF790253,A/New York/40/2012(H3N2))6 neuraminidase (NA) gene ......................................................A....................C...................................T.........A................................................G................................................T................T.............A...................................C........A..C..T..........G.......G.....G....................T.................C...... 17 17 , 17 17 18:>KF790253,A/New York/40/2012(H3N2))6 neuraminidase (NA) gene 19 >KF789911,A/Alabama/35/2012(H3N2))6 neuraminidase (NA) gene ......................................................A....................C.....T.............................T.........A............................................A...G................................................T......A.........T.............G...................................C........A..C..T..................G.....G....................T.................C...... 19 19 , 19 19 19:>KF789911,A/Alabama/35/2012(H3N2))6 neuraminidase (NA) gene 20 >KF789677,A/Virginia/14/2012(H3N2))6 neuraminidase (NA) gene ......................................................A....................C.....T.............................T.........A....R.......................................A...G................................................T......A.........T.............G...................................C........A..C..T..................G.....G....................T.................C...... 20 20 , 20 20 20:>KF789677,A/Virginia/14/2012(H3N2))6 neuraminidase (NA) gene 21 >KF789685,A/Maryland/43/2012(H3N2))6 neuraminidase (NA) gene ................................................R.....A....................C.....T.............................T.........A....R.......................................A...G................................................T......A.........T.............G...................................C........A..C..T..................G.....G....................T.................C...... 21 21 , 21 21 21:>KF789685,A/Maryland/43/2012(H3N2))6 neuraminidase (NA) gene 22 >KF790177,A/Vermont/16/2012(H3N2))6 neuraminidase (NA) gene ......................................................A..............T.....C...................................T.........A....R...........................................G................................................T................T.............G...................................C........A..C..T............T.....G.....G....................T.....T...........C...... 20 20 , 20 20 22:>KF790177,A/Vermont/16/2012(H3N2))6 neuraminidase (NA) gene 23 >KF790295,A/Mississippi/13/2012(H3N2))6 neuraminidase (NA) gene ......................................................A....................C......G............................T.........A....R...........................................G................................................T................T.A...........G...............................G...C........A..C..T..................G.....G....................T.................C...... 20 20 , 20 20 23:>KF790295,A/Mississippi/13/2012(H3N2))6 neuraminidase (NA) gene 24 >KF789924,A/Georgia/16/2012(H3N2))6 neuraminidase (NA) gene ......................................................AT...................C...................................T.........A....R...........................................G................................................T................T.............G...................................C........A..C..T..................G.....G....................T.................C...T.. 19 19 , 19 19 24:>KF789924,A/Georgia/16/2012(H3N2))6 neuraminidase (NA) gene 25 >KF789901,A/Georgia/15/2012(H3N2))6 neuraminidase (NA) gene ......................................................AT...................C...................................T.........A...R............................................G................................................T................T.............G...................................C........A..C..T..................G.....G....................T.................C...T.. 19 19 , 19 19 25:>KF789901,A/Georgia/15/2012(H3N2))6 neuraminidase (NA) gene 26 >KF789992,A/Florida/39/2012(H3N2))6 neuraminidase (NA) gene ......................................................A....................C...................................T.........A...R............................................G................................................T................T.............G...................................CG.......A..C..T..................G.....G..C.................T.................C...... 19 19 , 19 19 26:>KF789992,A/Florida/39/2012(H3N2))6 neuraminidase (NA) gene 27 >KF789779,A/Louisiana/16/2012(H3N2))6 neuraminidase (NA) gene ......................................................A....................C...................................T.........A................................................G................................................T...G............T.............G...................................C........A..C..T..................G.....G....................T.................C...... 17 17 , 17 17 27:>KF789779,A/Louisiana/16/2012(H3N2))6 neuraminidase (NA) gene 28 >KF790098,A/Wisconsin/37/2012(H3N2))6 neuraminidase (NA) gene ......................................................A....T...............C...................................T.........A.T................................A.............G...................................G............T................T.............G...................................C........A..C..T..................G.....G....................T.................C...... 20 20 , 20 20 28:>KF790098,A/Wisconsin/37/2012(H3N2))6 neuraminidase (NA) gene 29 >KF790105,A/Mississippi/12/2012(H3N2))6 neuraminidase (NA) gene ......................................................A....T...............C...................................T.........A.Y................................A.............G...................................G............T................T.............G...................................C........A..C..T..................G.....G....................T.................C...... 20 20 , 20 20 29:>KF790105,A/Mississippi/12/2012(H3N2))6 neuraminidase (NA) gene 30 >KF790417,A/Nebraska/04/2013(H3N2))6 neuraminidase (NA) gene ......................................................A....T...............C...................................T.........A..................................A.............G...................................G............T................T.............G...................................C........A..C..T..................G.....G....................T.................C...... 19 19 , 19 19 30:>KF790417,A/Nebraska/04/2013(H3N2))6 neuraminidase (NA) gene 31 >KF790161,A/Oklahoma/04/2012(H3N2))6 neuraminidase (NA) gene .....................................G...................................................................T........A......A..........T.................................A...G......................G............G............T....C.................G.................A....................C.............A..C..T.............................................T.........T.......C...... 20 20 , 20 20 31:>KF790161,A/Oklahoma/04/2012(H3N2))6 neuraminidase (NA) gene 32 >KF790288,A/Maine/08/2012(H3N2))6 neuraminidase (NA) gene C...........................G.G..........................................................................................A................................................G....C.................GG........................T........................................A...G.............C................A..C............G.........................GA........T.................C....G. 20 20 , 20 20 32:>KF790288,A/Maine/08/2012(H3N2))6 neuraminidase (NA) gene 33 >KF790173,A/Louisiana/09/2012(H3N2))6 neuraminidase (NA) gene C.................................................................................G......................................A....R...........................................G....C.................GG................T.......T............................................G..................A...........A..C............G.A....A..................GA........T.................C....G. 22 22 , 22 22 33:>KF790173,A/Louisiana/09/2012(H3N2))6 neuraminidase (NA) gene 34 >Index/32g12f1.c2,42-53 C.....................................................A..................................................................A.......T..................G.....................G....C.................GG........................T............................................G..................A...........A..C............G..........................A........TG................C...... 19 19 , 19 19 34:>Index/32g12f1.c2,42-53 35 >KF790498,A/Texas/83/2012(H3N2))6 neuraminidase (NA) gene C..........................................C..........A..................................................................A...R...T..................G.....................G..G.C.................GG........................T............................................G..................A...........A..C............G..........................A........TG................C...... 22 22 , 22 22 35:>KF790498,A/Texas/83/2012(H3N2))6 neuraminidase (NA) gene 36 >KF790182,A/Maryland/32/2012(H3N2))6 neuraminidase (NA) gene C........................................................................................................................A.M.....T.................A......................G....C.................GG........................T............................................G.....A............A...........A..C............G.........................GA........TG................C...... 21 21 , 21 21 36:>KF790182,A/Maryland/32/2012(H3N2))6 neuraminidase (NA) gene 37 >KF790206,A/Hawaii/27/2012(H3N2))6 neuraminidase (NA) gene C.......................................................................G..............................T.................A.T.............................................GG....C.................GT........................T............G.......A.............T...........A................A...........A..C....................A.................GA........T.......A.........C...... 24 24 , 24 24 37:>KF790206,A/Hawaii/27/2012(H3N2))6 neuraminidase (NA) gene 38 >KF790207,A/Hawaii/27/2012(H3N2))6 neuraminidase (NA) gene C.......................................................................G..............................T.................A...............................................GG....C.................GT........................T............G.......A.............T...........A................A....R......A..C....................A.................GA........T.......A.........C...... 24 24 , 24 24 38:>KF790207,A/Hawaii/27/2012(H3N2))6 neuraminidase (NA) gene 39 >KF790271,A/Alaska/24/2012(H3N2))6 neuraminidase (NA) gene C........................................................................................................................A................................................G....C.................GT........................T............G.................................A......T.........A...........A..C......................................GA........T.......A.........C...... 18 18 , 18 18 39:>KF790271,A/Alaska/24/2012(H3N2))6 neuraminidase (NA) gene 40 >KF790176,A/Alaska/22/2012(H3N2))6 neuraminidase (NA) gene C........................................................................................................................A................................................G....C.................GT........................T............G.................................A......T.........A...........A..C......................................GA........T.......A.........C...... 18 18 , 18 18 40:>KF790176,A/Alaska/22/2012(H3N2))6 neuraminidase (NA) gene 41 >KF790189,A/Alaska/23/2012(H3N2))6 neuraminidase (NA) gene C........................................................................................................................A................................................G....C.................GT........................T............G.................................A......T.........A...........A..C......................................GA........T.......A.........CA..... 19 19 , 19 19 41:>KF790189,A/Alaska/23/2012(H3N2))6 neuraminidase (NA) gene 42 >KF790202,A/Alaska/23/2012(H3N2))6 neuraminidase (NA) gene C........................................................................................................................A....R...........................................G....C.................GT........................T............G.................................A......T.........A...........A..C......................................GA........T.......A.........CA..... 20 20 , 20 20 42:>KF790202,A/Alaska/23/2012(H3N2))6 neuraminidase (NA) gene 43 >KF790226,A/Alaska/24/2012(H3N2))6 neuraminidase (NA) gene C........................................................................................................................A....R...........................................G....C.................GT........................T............G.................................A......T.........A...........A..C......................................GA........T.......A.........C...... 19 19 , 19 19 43:>KF790226,A/Alaska/24/2012(H3N2))6 neuraminidase (NA) gene 44 >KF789801,A/Alaska/31/2012(H3N2))6 neuraminidase (NA) gene C........................................................................................................................A....R...........................................G....C.................GT........................T............G.................................A......T.........A...........A..C......................................GA........T.......A.........C...... 19 19 , 19 19 44:>KF789801,A/Alaska/31/2012(H3N2))6 neuraminidase (NA) gene 45 >KF789575,A/North Dakota/07/2012(H3N2))6 neuraminidase (NA) gene C...........K............................................................................................................A....R...........................................G....C.................GT........................T............G.................................A......T.........A...........AT.C......................................GA........T.......A.........C...... 21 21 , 21 21 45:>KF789575,A/North Dakota/07/2012(H3N2))6 neuraminidase (NA) gene 46 >KF789886,A/Arkansas/05/2012(H3N2))6 neuraminidase (NA) gene C...................................................................A....................................................A...RR...........................................G....C.................GT........................T............G.................................A......T.........A...........A..C......................................GA........T.......A.........C...... 21 21 , 21 21 46:>KF789886,A/Arkansas/05/2012(H3N2))6 neuraminidase (NA) gene 47 >KF790198,A/Alaska/22/2012(H3N2))6 neuraminidase (NA) gene C........................................................................................................................A...R............................................G....C.................GT........................T............G.................................A......T.........A...........A..C......................................GA........T.......A.........C...... 19 19 , 19 19 47:>KF790198,A/Alaska/22/2012(H3N2))6 neuraminidase (NA) gene 48 >KF790392,A/New York/61/2012(H3N2))6 neuraminidase (NA) gene C...............C.................................C...............................................A......................A................................................G....C.................GT............T...........T............G.................................A......T.........A...........A..C......................................GA........T...A...A.........C..T... 24 24 , 24 24 48:>KF790392,A/New York/61/2012(H3N2))6 neuraminidase (NA) gene 49 >KF790435,A/Louisiana/11/2012(H3N2))6 neuraminidase (NA) gene ................C......C.........G.......................................................................................A..........................G.....................G.....................C............C.............T....................................G..........................A...........A..C..T.............................................T.................C.....C 17 17 , 17 17 49:>KF790435,A/Louisiana/11/2012(H3N2))6 neuraminidase (NA) gene 50 >Index/H3N3-2011-reassortedEI/2011(H3N2) .........................................................................................................................A................................................G................................................T...........................................................................A..C..T.............................................T.................C...... 8 8 , 8 8 50:>Index/H3N3-2011-reassortedEI/2011(H3N2) 51 >KF789908,A/Florida/68/2012(H3N2))6 neuraminidase (NA) gene .......................................................................................................T.................A.............................C..................G................C...............................T...........................................................................A..C..T........................G....................T.................C...... 12 12 , 12 12 51:>KF789908,A/Florida/68/2012(H3N2))6 neuraminidase (NA) gene 52 >KF789902,A/Kentucky/24/2012(H3N2))6 neuraminidase (NA) gene .....................................................................T.....C...........................T..............A..A.................G...........C.............A....G................C...........G...................T.....C...........................G.........................................A..C..T.......................CG....................C.................C...... 21 21 , 21 21 52:>KF789902,A/Kentucky/24/2012(H3N2))6 neuraminidase (NA) gene 53 >KF789603,A/Kentucky/17/2012(H3N2))6 neuraminidase (NA) gene .....................................................................T.....C...........................T..............A..A....R............G...........C.............A....G................C...........G...................T.....C...........................G.........................................A..C..T.......................CG....................C.................C...... 22 22 , 22 22 53:>KF789603,A/Kentucky/17/2012(H3N2))6 neuraminidase (NA) gene 54 >KF790513,A/Tennessee/10/2012(H3N2))6 neuraminidase (NA) gene .....................................................................T.....C...........................T..............A..A....R............G...........C.............A....G................C...........G...................T.....C...........................G.........................................A..C..T.......................CG....................C.................C...... 22 22 , 22 22 54:>KF790513,A/Tennessee/10/2012(H3N2))6 neuraminidase (NA) gene 55 >KF790487,A/South Carolina/22/2012(H3N2))6 neuraminidase (NA) gene .....................................................................T.....C...........................T..............A..A.................G...........C.............A....G................C...........G...................T.....C...........................G...........R.............................A..C..T.......................CG....................C.................C...... 22 22 , 22 22 55:>KF790487,A/South Carolina/22/2012(H3N2))6 neuraminidase (NA) gene 56 >KF789816,A/Virginia/16/2012(H3N2))6 neuraminidase (NA) gene .....................................................................T.....C...........................T..............A..A.................G...........C.............A....G................C...........G.C.................T.....C...........................G.........................................A..C..T.....A.................CG....................C.................C...... 23 23 , 23 23 56:>KF789816,A/Virginia/16/2012(H3N2))6 neuraminidase (NA) gene 57 >KF789809,A/Virginia/16/2012(H3N2))6 neuraminidase (NA) gene .....................................................................T.....C...........................T....R.........A..A...R.............G...........C.............A....G................C...........G.C.................T.....C...........................G.........................................A..C..T.....A.................CG....................C.................C...... 25 25 , 25 25 57:>KF789809,A/Virginia/16/2012(H3N2))6 neuraminidase (NA) gene 58 >KF789672,A/Virginia/15/2012(H3N2))6 neuraminidase (NA) gene ................................................................R....T.....C...........................T..............A..A...R.............G...........C.............A....G................C...........G.C.................T.....C...........................G.........................................A..C..T.......................CG....................C.................C...... 24 24 , 24 24 58:>KF789672,A/Virginia/15/2012(H3N2))6 neuraminidase (NA) gene 59 >KF789914,A/South Carolina/24/2012(H3N2))6 neuraminidase (NA) gene .....................................................................T.....C...........................T..............A..A.Y.R.............G...........C.............A....G................C...........G...................T.....C...........................G.........................................A..C..T.......................CG....................C.................C...... 23 23 , 23 23 59:>KF789914,A/South Carolina/24/2012(H3N2))6 neuraminidase (NA) gene 60 >KF789704,A/Kentucky/18/2012(H3N2))6 neuraminidase (NA) gene .....................................................................T.....C...........................T..............A..A.................G...........C.............A....G................C...........G...................T.....C...........................G.........................................A..C..T.......................CG....................C............C....C...... 22 22 , 22 22 60:>KF789704,A/Kentucky/18/2012(H3N2))6 neuraminidase (NA) gene 61 >KF789969,A/South Carolina/24/2012(H3N2))6 neuraminidase (NA) gene ........................T............................................T.....C...........................T..............A..A.................G...........C.............A....G................C...........G...................T.....C...........................G.........................................A..C..T.......................CG....................C.................C...... 22 22 , 22 22 61:>KF789969,A/South Carolina/24/2012(H3N2))6 neuraminidase (NA) gene 62 >KF789720,A/Tennessee/18/2012(H3N2))6 neuraminidase (NA) gene .....................................................................T.....C...........................T..............A..A.................G...........C.............A....G................C...........G...................T.....C...........................G.........................................A..C..T.......................CG....................C.................C...... 21 21 , 21 21 62:>KF789720,A/Tennessee/18/2012(H3N2))6 neuraminidase (NA) gene 63 >KF789760,A/Michigan/33/2012(H3N2))6 neuraminidase (NA) gene .....................................................................T.....C...........................T..............A..A.................G...........C.............A....G................C...........G...................T.....C...........................G.........................................A..C..T.......................CG....................C.................C...... 21 21 , 21 21 63:>KF789760,A/Michigan/33/2012(H3N2))6 neuraminidase (NA) gene 64 >A/Czech Republic/121/2012,2012/03/06,Czech Republic ...T.......................................................................C....A..G....C................................A............T....G..............................G.......T..................A....................AT........................................................................A..A..C...........................G....................T.................C...... 19 19 , 19 19 64:>A/Czech Republic/121/2012,2012/03/06,Czech Republic 65 >KF789595,A/New Hampshire/16/2012(H3N2))6 neuraminidase (NA) gene ....................................T......................................C....A..G....C..........................C.....A............T....G..............................G.......T..................A.......C............AT......................G..A..............................................A..AT.C...........................G....................T.................C...... 24 24 , 24 24 65:>KF789595,A/New Hampshire/16/2012(H3N2))6 neuraminidase (NA) gene 66 >KF789695,A/Maine/05/2012(H3N2))6 neuraminidase (NA) gene ...........................................................................C....A..G....C................................A............T....G..............................G.......T.A................A....................AT........................C...............................................A..A..C...........................G................A...T.................C...... 21 21 , 21 21 66:>KF789695,A/Maine/05/2012(H3N2))6 neuraminidase (NA) gene 67 >KC893168,A/Maine/05/2012(H3N2))6 neuraminidase (NA) gene ...........................................................................C....A..G....C................................A...R........T....G..............................G.......T.A................A....................AT........................C...............................................A..A..C...........................G................A...T.................C...... 22 22 , 22 22 67:>KC893168,A/Maine/05/2012(H3N2))6 neuraminidase (NA) gene 68 >KF790034,A/Oklahoma/08/2013(H3N2))6 neuraminidase (NA) gene ...........................................................................C....A..G....C.A................A....A........A.Y.R........T....G..............................G.......T.A................A....................AT..............C......................C..................................A..A..C..........T................G...............A....T.................C...... 28 28 , 28 28 68:>KF790034,A/Oklahoma/08/2013(H3N2))6 neuraminidase (NA) gene 69 >KF790220,A/Arizona/09/2012(H3N2))6 neuraminidase (NA) gene ...........................................................................C....A..G....C................................A.Y..........T....G..............................G.......T..................A....................AT..............C...............................................G.........A..A..C..........T................G...............A....T.................C...... 23 23 , 23 23 69:>KF790220,A/Arizona/09/2012(H3N2))6 neuraminidase (NA) gene 70 >KF790268,A/Arizona/09/2012(H3N2))6 neuraminidase (NA) gene ...........................................................................C....A..G....C.............R..................A............T....G..............................G.......T..................A....................AT..............C...............................................G.........A..A..C..........T................G...............A....T.................C...... 23 23 , 23 23 70:>KF790268,A/Arizona/09/2012(H3N2))6 neuraminidase (NA) gene 71 >KF790245,A/Indiana/161/2012(H3N2))6 neuraminidase (NA) gene ...........................................................................C....A..G....C................................A...R........T....G..............................G.......T..................A....................AT..............C...............................................G.........A..A..C..........T................G...............A....T.................C...... 23 23 , 23 23 71:>KF790245,A/Indiana/161/2012(H3N2))6 neuraminidase (NA) gene 72 >KF790344,A/New Mexico/05/2013(H3N2))6 neuraminidase (NA) gene ...........................................................................C....A..G....C....A...........................A...R........T....G..............................G.......T..................A....................AT..............C.........................................................A..A..C..........T................G...............A....T.................C...... 23 23 , 23 23 72:>KF790344,A/New Mexico/05/2013(H3N2))6 neuraminidase (NA) gene 73 >KF789778,A/Oregon/12/2012(H3N2))6 neuraminidase (NA) gene ...........................................................................C....A..G....C................................A...R........T....G....A.........................G.......T..................A....................AT..............C.........................................................A..A..C..........T................G...............A....T.................C...... 23 23 , 23 23 73:>KF789778,A/Oregon/12/2012(H3N2))6 neuraminidase (NA) gene 74 >KF789781,A/Kansas/14/2012(H3N2))6 neuraminidase (NA) gene ...........................................................................C....A.GG....C................................A...R........T....G..............................G.......T..................A....................AT..............C.......................G.................................A..A..C..........T................G...............A....T.................C...... 24 24 , 24 24 74:>KF789781,A/Kansas/14/2012(H3N2))6 neuraminidase (NA) gene 75 >KF789921,A/Hawaii/24/2012(H3N2))6 neuraminidase (NA) gene ....................................................R......................C....A..G....C................................A...R........T....G..............................G.......T..................A....................AT..............C.........................................................A..A..C..........T................G...............A....T.G...............C...... 24 24 , 24 24 75:>KF789921,A/Hawaii/24/2012(H3N2))6 neuraminidase (NA) gene 76 >KF789542,A/Pennsylvania/03/2013(H3N2))6 neuraminidase (NA) gene ...........................................................................C....A..G....C................................A..CR........T....G..............................G.......T..................A....................AT..............C...................................A.....................A..A..C..........T................G...............A....T.................C...... 24 24 , 24 24 76:>KF789542,A/Pennsylvania/03/2013(H3N2))6 neuraminidase (NA) gene 77 >KF790004,A/New York/35/2012(H3N2))6 neuraminidase (NA) gene ...........................................................................C....A..G....C................................A...R........T....G..............................G.......T..................A....................AT..............C.........................................................A..A..C..........T................G...............A....T.................C...... 22 22 , 22 22 77:>KF790004,A/New York/35/2012(H3N2))6 neuraminidase (NA) gene 78 >KF790085,A/Vermont/28/2012(H3N2))6 neuraminidase (NA) gene ...........................................................................C....A..G....C................................A...R........T....G..............................G.......T..................A....................AT..............C.........................................................A..A..C..........T................G...............A....T.................C...... 22 22 , 22 22 78:>KF790085,A/Vermont/28/2012(H3N2))6 neuraminidase (NA) gene 79 >KF790101,A/Delaware/10/2012(H3N2))6 neuraminidase (NA) gene ...........................................................................C....A..G....C................................A...R........T....G..............................G.......T..................A....................AT..............C.........................................................A..A..C..........T................G...............A....T.................C...... 22 22 , 22 22 79:>KF790101,A/Delaware/10/2012(H3N2))6 neuraminidase (NA) gene 80 >KF790434,A/Delaware/11/2012(H3N2))6 neuraminidase (NA) gene ...........................................................................C....A..G....C................................A...R........T....G..............................G.......T..................A....................AT..............C.........................................................A..A..C..........T.........A......G...............A....T.................C...... 23 23 , 23 23 80:>KF790434,A/Delaware/11/2012(H3N2))6 neuraminidase (NA) gene 81 >KF790170,A/Washington/52/2012(H3N2))6 neuraminidase (NA) gene ...........................................................................C....A..G....C................................A...R........T....G......................................T..................A....................AT..............C.........................................................A..A..C..........T................G...........A...A....T.................C...... 22 22 , 22 22 81:>KF790170,A/Washington/52/2012(H3N2))6 neuraminidase (NA) gene 82 >KF789621,A/Maryland/03/2013(H3N2))6 neuraminidase (NA) gene ....A.....G................................................................C....A..G....C................................A............T....G..............................G.......T..................A...G..........A.....AT..............C.........................................................A..A..C..........T................G...........A...A....T.................C...... 26 26 , 26 26 82:>KF789621,A/Maryland/03/2013(H3N2))6 neuraminidase (NA) gene 83 >KF790154,A/California/04/2013(H3N2))6 neuraminidase (NA) gene ..C........................................................................C....A..G....C................................A............T....G......................T.......G.......T.....G............A....................AT..............C.........................................................A..A..C..........T................G...............A....T.................C...... 24 24 , 24 24 83:>KF790154,A/California/04/2013(H3N2))6 neuraminidase (NA) gene 84 >KF789624,A/North Carolina/04/2013(H3N2))6 neuraminidase (NA) gene .................A.........................................................C....A..G....C................................A............T....G..............................G.......T.......................................AT..............C.........................................................A..A..C..........T................G...............A....T.................C...... 21 21 , 21 21 84:>KF789624,A/North Carolina/04/2013(H3N2))6 neuraminidase (NA) gene 85 >KF789711,A/Texas/91/2012(H3N2))6 neuraminidase (NA) gene ...........................................................................C....A..G....C................................A............T....G..W...........................G.......T..................A....................AT..............C.........................................................A..A..C..........T................G...............A....T.................C...... 22 22 , 22 22 85:>KF789711,A/Texas/91/2012(H3N2))6 neuraminidase (NA) gene 86 >KF790193,A/Florida/40/2012(H3N2))6 neuraminidase (NA) gene ..............................................A............................C....A..G....C................................A............T....G..............................G.......T..................A....................AT..............C.........................................................A..A..C..........T................G...............A....T.................C...... 22 22 , 22 22 86:>KF790193,A/Florida/40/2012(H3N2))6 neuraminidase (NA) gene 87 >KF790243,A/California/42/2012(H3N2))6 neuraminidase (NA) gene ...........................................................................C....A..G....C................................A............T....G..............................G.......T..................A....................AT..............C.........................................................A..A..C..........T................G...............A....T.................C...... 21 21 , 21 21 87:>KF790243,A/California/42/2012(H3N2))6 neuraminidase (NA) gene 88 >Index/32g12f1.c2,10-37 ...........................................................................C....A..G....C................................A............T....G..............................G.......T..................A....................AT..............C.........................................................A..A..C..........T................G...............A....T.................C...... 21 21 , 21 21 88:>Index/32g12f1.c2,10-37 89 >KF790075,A/Vermont/28/2012(H3N2))6 neuraminidase (NA) gene ...........................................................................C....A..G....C................................A............T....G..............................G.......T..................A....................AT..............C.........................................................A..A..C..........T................G...............A....T.................C...... 21 21 , 21 21 89:>KF790075,A/Vermont/28/2012(H3N2))6 neuraminidase (NA) gene 90 >KF789678,A/Rhode Island/09/2012(H3N2))6 neuraminidase (NA) gene ...........................................................................C....A..G....C................................A............T....G..............................G.......T..................A....................AT..............C.........................................................A..A..C..........T................G...............A....T.................C...... 21 21 , 21 21 90:>KF789678,A/Rhode Island/09/2012(H3N2))6 neuraminidase (NA) gene 91 >KF789850,A/Michigan/02/2013(H3N2))6 neuraminidase (NA) gene ...........................................................................C....A..G....C................................A............T....G..............................G.......T..................A....................AT..............C.........................................................A..A..C..........T................G...............A....T.................C...... 21 21 , 21 21 91:>KF789850,A/Michigan/02/2013(H3N2))6 neuraminidase (NA) gene 92 >KF790445,A/Delaware/15/2012(H3N2))6 neuraminidase (NA) gene .........................C.................................................C....A..G....C................................A............T....G..............................G.......T..................A....................AT..............C.........................................................A..A..C..........T................G...............A....T.................C...... 22 22 , 22 22 92:>KF790445,A/Delaware/15/2012(H3N2))6 neuraminidase (NA) gene 93 >KF789918,A/Texas/01/2013(H3N2))6 neuraminidase (NA) gene ........................................G..................................C....A..G....C................................A............T....G..............................G.......T..................A....................AT..............C.........................................................A..A..C..........T................G...............A....T.................C...... 22 22 , 22 22 93:>KF789918,A/Texas/01/2013(H3N2))6 neuraminidase (NA) gene 94 >KF790347,A/Utah/02/2013(H3N2))6 neuraminidase (NA) gene ........................................G..................................C....A..G....C................................A............T....G..............................G.......T..................A....................AT..............C.......................C.................................A..A..C..........T................G...............A....T.................C...... 23 23 , 23 23 94:>KF790347,A/Utah/02/2013(H3N2))6 neuraminidase (NA) gene 95 >KF790377,A/Oklahoma/05/2013(H3N2))6 neuraminidase (NA) gene ........................................G..................................C....A..G....C................................A............T.G..G..............................G.......T..................A..................T.AT..............C.........................................................A..A..C..........T................G...............A....T.................C...... 24 24 , 24 24 95:>KF790377,A/Oklahoma/05/2013(H3N2))6 neuraminidase (NA) gene 96 >KF790462,A/Oklahoma/05/2013(H3N2))6 neuraminidase (NA) gene ........................................G..................................C....A..G....C................................A...R........T.G..G..............................G.......T..................A..................T.AT..............C.........................................................A..A..C..........T................G...............A....T.................C...... 25 25 , 25 25 96:>KF790462,A/Oklahoma/05/2013(H3N2))6 neuraminidase (NA) gene 97 >KF789554,A/California/15/2013(H3N2))6 neuraminidase (NA) gene ...........................................................................C....A..G....C................................A...R........T....G............C.................G.......TT.................A....................AT..............C.........................................................A..A..C..........T................G...............A....T....C............C...... 25 25 , 25 25 97:>KF789554,A/California/15/2013(H3N2))6 neuraminidase (NA) gene 98 >KF789719,A/Montana/14/2012(H3N2))6 neuraminidase (NA) gene ...........................................................................C....A..G....C................................A............T....G........G.....................G.......TT.................A....................AT..............C.........................................................A..A..C..........T................G...............A....T.................C...... 23 23 , 23 23 98:>KF789719,A/Montana/14/2012(H3N2))6 neuraminidase (NA) gene 99 >KF790058,A/Delaware/01/2013(H3N2))6 neuraminidase (NA) gene .........................................G.................................C....A..G....C................................A............T....G..............................G.......T...........G......A....................AT..............C.........................................................A..A..C..........T................G...............A....T.................C...... 23 23 , 23 23 99:>KF790058,A/Delaware/01/2013(H3N2))6 neuraminidase (NA) gene 100 >KF789991,A/Montana/10/2012(H3N2))6 neuraminidase (NA) gene .............................C...................................A.........C....A..G....C................................A....R.......T....G..............................G.......T..................A....................AT..............C.........................................................A..A..C..........T................G...............A....T.................C...... 24 24 , 24 24 100:>KF789991,A/Montana/10/2012(H3N2))6 neuraminidase (NA) gene 101 >KF789570,A/Indiana/01/2013(H3N2))6 neuraminidase (NA) gene ...........................................................................C....A..G....C................................A....R.......T....G..............................G.......T..................A....................AT..............C.................................C.......................A..A..C..........T................G...............A....T.................C...... 23 23 , 23 23 101:>KF789570,A/Indiana/01/2013(H3N2))6 neuraminidase (NA) gene 102 >KF790057,A/Texas/111/2012(H3N2))6 neuraminidase (NA) gene ...........................................................................C....A..G....C................................A....R.......T....G..............................G.......T..................A....................AT..............C.........................................................A..A..C.....T....T................G...............A....T.................C...... 23 23 , 23 23 102:>KF790057,A/Texas/111/2012(H3N2))6 neuraminidase (NA) gene 103 >KF789984,A/Texas/81/2012(H3N2))6 neuraminidase (NA) gene ...........................................................................C....A..G....C................................A...RR.......T....G..............................G.......T..................A....................AT.C............C.........................................................A..A..C..........T................G...............A....T.................C...... 24 24 , 24 24 103:>KF789984,A/Texas/81/2012(H3N2))6 neuraminidase (NA) gene 104 >KF790112,A/Kentucky/16/2012(H3N2))6 neuraminidase (NA) gene ...........................................................................C....A..G....C................................A....R.......T....G..............................G.......T..................A....................AT..............C....................................G....................A..A..C..........T................G...............A....T.................C...... 23 23 , 23 23 104:>KF790112,A/Kentucky/16/2012(H3N2))6 neuraminidase (NA) gene 105 >KF790399,A/Florida/12/2013(H3N2))6 neuraminidase (NA) gene ...........................T.................G........A....................C....A..G....C................................A............T....G..............................G.......T..................A....G...............AT..............C....................................G....................A..A..C..........T................G...............A....T.................C...... 26 26 , 26 26 105:>KF790399,A/Florida/12/2013(H3N2))6 neuraminidase (NA) gene 106 >KF789609,A/Nebraska/06/2013(H3N2))6 neuraminidase (NA) gene ..................................................C...A....M...............C....A..G....C................................A...R........T....G..............................G.......T..................A....................AT..............C....................................G....................A..A..C..........T................G...............A....T........A........C...... 27 27 , 27 27 106:>KF789609,A/Nebraska/06/2013(H3N2))6 neuraminidase (NA) gene 107 >KF790371,A/Maryland/05/2013(H3N2))6 neuraminidase (NA) gene ...........................................................................C....A..G....C................................A...R........T....G......T.......................G.......T..................A....................AT..............C............................C.......G....................A..A..C......A...T................G...............A....T.................C...... 26 26 , 26 26 107:>KF790371,A/Maryland/05/2013(H3N2))6 neuraminidase (NA) gene 108 >KF790336,A/District Of Columbia/02/2012(H3N2))6 neuraminidase (NA) gene ...........................................................................C....A..G....C................................A...R........T....G..............................G.......T..................A....................AT..............C....................................G....................A..A..C......A...T................G...............A....T.................C...... 24 24 , 24 24 108:>KF790336,A/District Of Columbia/02/2012(H3N2))6 neuraminidase (NA) gene 109 >KF789648,A/Alaska/06/2013(H3N2))6 neuraminidase (NA) gene ...........................................................................C....A..G....C...A............................A...A........T....G.C............................G.......T..................A....................AT..............C.........................................................A..A..C..........T................G...............A....T..............C..C...... 25 25 , 25 25 109:>KF789648,A/Alaska/06/2013(H3N2))6 neuraminidase (NA) gene 110 >KF790381,A/Alaska/05/2013(H3N2))6 neuraminidase (NA) gene ...........................................................................C....A..G....C...A............................A...R........T....G.C............................G.......T..................A....................AT..............C.........................................................A..A..C..........T................G...............A....T.................C...... 24 24 , 24 24 110:>KF790381,A/Alaska/05/2013(H3N2))6 neuraminidase (NA) gene 111 >KF789750,A/Maryland/06/2013(H3N2))6 neuraminidase (NA) gene .........................................T.................................C....A..G....C...A............................A...R........T....G..............................G....G..T..G......T........A.................A..AT..............C.........................................................A..A..C...........................G....................T.........A.....A.C...... 28 28 , 28 28 111:>KF789750,A/Maryland/06/2013(H3N2))6 neuraminidase (NA) gene 112 >KF789866,A/Hawaii/02/2013(H3N2))6 neuraminidase (NA) gene .................................G.........................................C....A..G....C...A............................A...R........T....G..............................G.......T..................A...................TAT..............C...................................................C.....A..A..C...........................G....................T.................CC..... 25 25 , 25 25 112:>KF789866,A/Hawaii/02/2013(H3N2))6 neuraminidase (NA) gene 113 >KF789972,A/West Virginia/01/2013(H3N2))6 neuraminidase (NA) gene .................................G.........................................C....A..G....C................................A...R........T....G..............................G.......T..................A...................TAT..............C.........................................................A..A..C...........................G....................T......T..........CC..... 24 24 , 24 24 113:>KF789972,A/West Virginia/01/2013(H3N2))6 neuraminidase (NA) gene 114 >KF790472,A/Rhode Island/06/2013(H3N2))6 neuraminidase (NA) gene .................................G.........................................C....A..G....C................................A...R........T....G..............................G.......T..................A...................TAT..............C.......................................C.................A..A..C...........................G....................T.................CC..... 24 24 , 24 24 114:>KF790472,A/Rhode Island/06/2013(H3N2))6 neuraminidase (NA) gene 115 >KF790163,A/New York/37/2012(H3N2))6 neuraminidase (NA) gene .................................G.........................................C....A..G....C................................A............T....G..............................G.......T..................A...................TAT..............C.........................................................A..A..C...........................G....................T.................CC..... 22 22 , 22 22 115:>KF790163,A/New York/37/2012(H3N2))6 neuraminidase (NA) gene 116 >KF790264,A/Rhode Island/08/2012(H3N2))6 neuraminidase (NA) gene .................................G.........................................C....A..G....C................................A............T....G..............................G.......T..................A...................TAT..............C.........................................................A..A..C...........................G....................T.................CC..... 22 22 , 22 22 116:>KF790264,A/Rhode Island/08/2012(H3N2))6 neuraminidase (NA) gene 117 >KF790292,A/New York/39/2012(H3N2))6 neuraminidase (NA) gene .................................G.........................................C....A..G....C................................A............T....G..............................G.......T..................A...................TAT..............C.........................................................A..A..C...........................G....................T.................CC..... 22 22 , 22 22 117:>KF790292,A/New York/39/2012(H3N2))6 neuraminidase (NA) gene 118 >KF790222,A/New York/39/2012(H3N2))6 neuraminidase (NA) gene .................................G.........................................C....A..G....C...........R....................A............T....G..............................G.......T..................A...................TAT..............C.........................................................A..A..C...........................G....................T.................CC..... 23 23 , 23 23 118:>KF790222,A/New York/39/2012(H3N2))6 neuraminidase (NA) gene 119 >KF789896,A/Kansas/16/2012(H3N2))6 neuraminidase (NA) gene ...........................................................................C....A..G....C................................A........C...T....G..............................G.......T..................A....................AT.............YC.........................................................A..A..C...........................G....................T.................C...... 21 21 , 21 21 119:>KF789896,A/Kansas/16/2012(H3N2))6 neuraminidase (NA) gene 120 >KF789935,A/Wyoming/01/2013(H3N2))6 neuraminidase (NA) gene ...........................................................................C....A..G....C................................A........C...T....G..............................G.......T..................A....................AT..............C.........................................................A..A..C...........................G....................T.................C...... 20 20 , 20 20 120:>KF789935,A/Wyoming/01/2013(H3N2))6 neuraminidase (NA) gene 121 >KF789682,A/New Jersey/08/2012(H3N2))6 neuraminidase (NA) gene ......C.C...........C......................................................C....A..G....CC................C..............A...R....C...T....G............C.................G.......T..........G.......A....................AT..............C.........................................................A..A..C...........................G....................T.................C...... 28 28 , 28 28 121:>KF789682,A/New Jersey/08/2012(H3N2))6 neuraminidase (NA) gene 122 >KF790237,A/Pennsylvania/20/2012(H3N2))6 neuraminidase (NA) gene ...........................................................................C....A..G....C.................C..............A....R.......T....G..............................G.......T..........G.......A....................AT..............C.........................................................A..A..C...........................G........G...........T.................C...... 23 23 , 23 23 122:>KF790237,A/Pennsylvania/20/2012(H3N2))6 neuraminidase (NA) gene 123 >KF790094,A/Wyoming/18/2012(H3N2))6 neuraminidase (NA) gene ............................G..............................................C....A..G....C................................A....R.......T....G..............................G.......T..................A....................AT..............C.......................................C.................A..A..C............C..............G....................T.................C...... 23 23 , 23 23 123:>KF790094,A/Wyoming/18/2012(H3N2))6 neuraminidase (NA) gene 124 >KF789559,A/Idaho/03/2013(H3N2))6 neuraminidase (NA) gene ...........................................................................C....A..G....C.....A..........................A....R.......T....G..............................G.......T..................A....................AT..............C.TT.G....................................................A..A..C.....................G.....G....................T.................C...... 25 25 , 25 25 124:>KF789559,A/Idaho/03/2013(H3N2))6 neuraminidase (NA) gene 125 >KF790519,A/Arizona/11/2012(H3N2))6 neuraminidase (NA) gene ...........................................................................C....A..G....C.....A..........................A....R.......T....G..............................G.......T..................A....................AT..............C.TT.G....................................................A..A..C.....................G.....G....................T.................C...... 25 25 , 25 25 125:>KF790519,A/Arizona/11/2012(H3N2))6 neuraminidase (NA) gene 126 >KF789643,A/New Mexico/11/2013(H3N2))6 neuraminidase (NA) gene ...........................................................................C....A..G....C.....A..........................A...R........T....G..............................G......CT..................A....................AT..............C.TT.G....................................................A..A..C.....................G.....G....................T.................C...... 26 26 , 26 26 126:>KF789643,A/New Mexico/11/2013(H3N2))6 neuraminidase (NA) gene 127 >KF790405,A/New York/60/2012(H3N2))6 neuraminidase (NA) gene .......................................A...................................C....A..G....C.....A..........................A...R........T....G..............................G..G....T..................A....................AT..............C.........................................................A..A..C.....................G.....G....................T.................C...... 24 24 , 24 24 127:>KF790405,A/New York/60/2012(H3N2))6 neuraminidase (NA) gene 128 >KF789586,A/New Jersey/04/2012(H3N2))6 neuraminidase (NA) gene ...........................................................................C....A..G....C.....A..........................A.M.R........T....G..............................G.......T..................A....................AT..............C.........................................................A..A..C.................G...G.....G....................T.................C...... 24 24 , 24 24 128:>KF789586,A/New Jersey/04/2012(H3N2))6 neuraminidase (NA) gene 129 >KF789565,A/Michigan/01/2013(H3N2))6 neuraminidase (NA) gene .............A........................................A....................C....A..G....C.....A..........................A...R........T....G........................T.....G.......T..................A..G.................AT..............C.........................................................AC.A..C.....................G.....G....................T.................C...... 27 27 , 27 27 129:>KF789565,A/Michigan/01/2013(H3N2))6 neuraminidase (NA) gene 130 >KF789844,A/Washington/07/2013(H3N2))6 neuraminidase (NA) gene .....G................................................A....................C....A..G....C.....A..........................A...R........T....G........................T.....G.......T.A................A..G.................AT..............C.........................................................A..A..C.....................G.....G....................T.................C...... 27 27 , 27 27 130:>KF789844,A/Washington/07/2013(H3N2))6 neuraminidase (NA) gene 131 >KF790387,A/Delaware/06/2013(H3N2))6 neuraminidase (NA) gene ......................................................A....................C....A..G....C.....A..........................A...R........T....G........................T.....G.......T..................A..G.................AT..............C...T.....................................................A..A..C.....................G.....G....................T.................C...... 26 26 , 26 26 131:>KF790387,A/Delaware/06/2013(H3N2))6 neuraminidase (NA) gene 132 >KF790073,A/Oregon/15/2012(H3N2))6 neuraminidase (NA) gene ......................................................A....................C....A..G....C.....A..........................A...R........T....G........................T.....G.......T..................A..G.................AT..............C.........................................................A..A..C.....................G.....G....................T.................C...... 25 25 , 25 25 132:>KF790073,A/Oregon/15/2012(H3N2))6 neuraminidase (NA) gene 133 >KF790005,A/Washington/50/2012(H3N2))6 neuraminidase (NA) gene ......................................................A....................C....A..G....C.....A..........................A...R........T....G........................T.....G.......T..................A..G.................AT..............C.........................................................A..A..C.....................G.....G....................T.................C...... 25 25 , 25 25 133:>KF790005,A/Washington/50/2012(H3N2))6 neuraminidase (NA) gene 134 >KF790158,A/Delaware/24/2012(H3N2))6 neuraminidase (NA) gene ......................................................A....................C....A..G....C.....A..........................A...R........T....G........................T.....G.......T..................A..G.................AT..............C.........................................................A..A..C.....................G.....G....................T.................C...... 25 25 , 25 25 134:>KF790158,A/Delaware/24/2012(H3N2))6 neuraminidase (NA) gene 135 >KF789549,A/Washington/06/2013(H3N2))6 neuraminidase (NA) gene ......................................................A....................C....A..G....C.....A..........................A...R........T....G........................T.....G.......T..................A..G.................AT..............C.........................................................A..A..C.....................G.....G....................T.................C...... 25 25 , 25 25 135:>KF789549,A/Washington/06/2013(H3N2))6 neuraminidase (NA) gene 136 >KF790327,A/Washington/04/2013(H3N2))6 neuraminidase (NA) gene ......................................................A....................C....A..G....C.....A..........................A...R........T....G........................T.....G.......T..................A..G.................AT..............C.........................................................A..A..C.....................G.....G....................T.................C...... 25 25 , 25 25 136:>KF790327,A/Washington/04/2013(H3N2))6 neuraminidase (NA) gene 137 >KF789814,A/Idaho/37/2012(H3N2))6 neuraminidase (NA) gene ......................................................A....................C....A..G....C.....A..........................A...R........T....G........................T.....G.......T.....................G.................AT..............C.........................................................A..A..C.....................G.....G....................T.................C...... 24 24 , 24 24 137:>KF789814,A/Idaho/37/2012(H3N2))6 neuraminidase (NA) gene 138 >KF790406,A/New Hampshire/03/2013(H3N2))6 neuraminidase (NA) gene ......................................................A....................C....A..G....C.....A..........................A...R........T....G........................T.....G.......T..................A..G.................AT..............C......C.CC...T..................CCC..C.......C..........GA..A..C..........T..........G.....G....................T.................C...... 36 36 , 36 36 138:>KF790406,A/New Hampshire/03/2013(H3N2))6 neuraminidase (NA) gene 139 >KF789620,A/California/16/2013(H3N2))6 neuraminidase (NA) gene ......................................................A....................C....A..G....C.....A.A........................A...R........T....G..........G.............T.....G.......T..................A..G.................AT..............C.........................................................A..A..C.....................G.....G....................T.................C...... 27 27 , 27 27 139:>KF789620,A/California/16/2013(H3N2))6 neuraminidase (NA) gene 140 >KF790337,A/Missouri/02/2013(H3N2))6 neuraminidase (NA) gene ......................................................A....................C....A..G....C.....A..........................A...R........T....G..........G.............T.A...G.......T..................A..G.................AT..............C.........................................................A..A..C.....................G.....G....................T.................C...... 27 27 , 27 27 140:>KF790337,A/Missouri/02/2013(H3N2))6 neuraminidase (NA) gene 141 >KF790067,A/Nebraska/02/2013(H3N2))6 neuraminidase (NA) gene ......................................................A....................C....A..G....C.....A..........................A....R.......T....G..........G.............T.A...G.......T..................A..G.................AT..............C.........................................................A..A..C.....................G.....G....................T.................C...... 27 27 , 27 27 141:>KF790067,A/Nebraska/02/2013(H3N2))6 neuraminidase (NA) gene 142 >KF790069,A/Minnesota/01/2013(H3N2))6 neuraminidase (NA) gene ......................................................A....................C....A..G....C.....A..........................A............T....G..........G.............T.A...G.......T..................A..G.................AT..............C.........................................................A..A..C.....................G.....G....................T.................C...... 26 26 , 26 26 142:>KF790069,A/Minnesota/01/2013(H3N2))6 neuraminidase (NA) gene 143 >KF790499,A/Minnesota/17/2012(H3N2))6 neuraminidase (NA) gene ......................................................A....................C....A..G....C.....A..........................A............T....G..........G.............T.A...G.......T..................A..G.................AT..............C.........................................................A..A..C.....................G.....G....................T.................C...Y.. 27 27 , 27 27 143:>KF790499,A/Minnesota/17/2012(H3N2))6 neuraminidase (NA) gene 144 >KF790151,A/Colorado/27/2012(H3N2))6 neuraminidase (NA) gene ......................................................A....................C....A..G....C.....A..........................A............T....G..........G.............T.A...G.......T...........G......A..G.................AT..............C.........................................................A..A..C.....................G.....G....................T.................C...... 27 27 , 27 27 144:>KF790151,A/Colorado/27/2012(H3N2))6 neuraminidase (NA) gene 145 >KF790358,A/Utah/03/2013(H3N2))6 neuraminidase (NA) gene ......................................................A....................C....A..G....C.....A.......................A..A............T....G..........G.............T.....G.......T..................A..G.................AT..............C....C....................................................A..A..C.....................G.....G......CC..........A.T.................C...... 30 30 , 30 30 145:>KF790358,A/Utah/03/2013(H3N2))6 neuraminidase (NA) gene 146 >KF789777,A/Washington/60/2012(H3N2))6 neuraminidase (NA) gene ......................................................A....................C....A..G....C.....A..........................A............T....G........................T.....G.......T..T...............A..G.................AT..............C.........................................................A..A..C.....................G.....G....................T.................C...... 25 25 , 25 25 146:>KF789777,A/Washington/60/2012(H3N2))6 neuraminidase (NA) gene 147 >KF790308,A/Maryland/01/2013(H3N2))6 neuraminidase (NA) gene ......................................................A....................C....A..G....C.....A..........................A....W.......T....G........................T.....G.......T..................A..G.................AT..............C.........................................................A..A..C.....................G.....G....................T.................C...... 25 25 , 25 25 147:>KF790308,A/Maryland/01/2013(H3N2))6 neuraminidase (NA) gene 148 >KF789593,A/Nevada/27/2012(H3N2))6 neuraminidase (NA) gene ......................................................A....................C....A..G....C.....A..........................A....R.......T....G........................T.....G.......T..................A..G.................AT..............C.........................................................A..A..C.....................G.....G....................T.................C...... 25 25 , 25 25 148:>KF789593,A/Nevada/27/2012(H3N2))6 neuraminidase (NA) gene 149 >KF789795,A/Washington/61/2012(H3N2))6 neuraminidase (NA) gene ......................................................A....................C....A..G....C.....A..........................A....R.......T....G........................T.....G.......T..................A..G.................AT..............C.........................................................A..A..C.....................G.....G....................T.................C...... 25 25 , 25 25 149:>KF789795,A/Washington/61/2012(H3N2))6 neuraminidase (NA) gene 150 >KF790518,A/Nevada/03/2013(H3N2))6 neuraminidase (NA) gene ...................................................A..A....................C....A..G....C.....A..........................A....R.......T....G........................T.....G.......T..................A..G.................AT..............C.........................................................A..A..C.....................G.....G....................T.................C...... 26 26 , 26 26 150:>KF790518,A/Nevada/03/2013(H3N2))6 neuraminidase (NA) gene 151 >KF790312,A/Nevada/36/2012(H3N2))6 neuraminidase (NA) gene ...................................................A..A....................C....A..G....C.....A..........................A....R.......T....G........................T.....G.......T..................A..G.................AT..............C.........................................................A..A..C.....................G.....G....................T.................C...... 26 26 , 26 26 151:>KF790312,A/Nevada/36/2012(H3N2))6 neuraminidase (NA) gene 152 >KF789827,A/Idaho/38/2012(H3N2))6 neuraminidase (NA) gene ......................................................A....................C....A..G....C..C..A.....A....................A....R.......T....G........................T.....G.......T..................A..G.................AT..............CA........................................................A..A..C.....................G.....G....................T.................C...... 28 28 , 28 28 152:>KF789827,A/Idaho/38/2012(H3N2))6 neuraminidase (NA) gene 153 >KF789956,A/Montana/01/2013(H3N2))6 neuraminidase (NA) gene ......................................................A....................C....A..G....C..C..A..........................A............T....G........................T.....G.......T..................A..G.................AT..............CA........................................................A..A..C.....................G.....G....................T.................C...... 26 26 , 26 26 153:>KF789956,A/Montana/01/2013(H3N2))6 neuraminidase (NA) gene 154 >KF789540,A/Colorado/02/2013(H3N2))6 neuraminidase (NA) gene ......................................................A....................C....A..G....C..C..A..........................A............T....G........................T.....G.......T..................A..G.................AT..............CA........................................................A..A..C.....................G.....G....................T.................C...... 26 26 , 26 26 154:>KF789540,A/Colorado/02/2013(H3N2))6 neuraminidase (NA) gene 155 >KF790496,A/Washington/53/2012(H3N2))6 neuraminidase (NA) gene ......................................................A....................C....A..G....C..C..A..........................A...R........T....G........................T.....G.......T..................A..G.................AT..............CA........................................................A..A..C.....................G.....G....................T.................C...... 27 27 , 27 27 155:>KF790496,A/Washington/53/2012(H3N2))6 neuraminidase (NA) gene 156 >KF790449,A/Utah/27/2012(H3N2))6 neuraminidase (NA) gene ......................................................A....................C....A..G....C.....A.........C................A...R........T....G........................T.....G.......T..................A..G.................AT..............CA........................................................A..A..C.....................G.....G....................T.................C...... 27 27 , 27 27 156:>KF790449,A/Utah/27/2012(H3N2))6 neuraminidase (NA) gene 157 >KF790493,A/Idaho/24/2012(H3N2))6 neuraminidase (NA) gene ......................................................A....................C....A..G....C.....A..........................A.Y.R........T....G........................T.....G.......T..................A..G.................AT.......T......CA........................................................A..A..C.....................G.....G....................T.................C...... 28 28 , 28 28 157:>KF790493,A/Idaho/24/2012(H3N2))6 neuraminidase (NA) gene 158 >KF790108,A/Idaho/23/2012(H3N2))6 neuraminidase (NA) gene ......................................................A....................C....A..G....C.....A..........................A.Y..........T....G........................T.....G.......T..................A..G.................AT..............CA........................................................A..A..C.....................G.....G....................T.................C...... 26 26 , 26 26 158:>KF790108,A/Idaho/23/2012(H3N2))6 neuraminidase (NA) gene 159 >KF789746,A/Alaska/01/2013(H3N2))6 neuraminidase (NA) gene ...............A......................................A....................C....A..G....C.....A..........................A.Y..........T....G........................T.....G.......T..................A..G.................AT..............C.........................................................A..A..CA....................G.....G....................T.................C...... 27 27 , 27 27 159:>KF789746,A/Alaska/01/2013(H3N2))6 neuraminidase (NA) gene 160 >KF790346,A/Utah/07/2013(H3N2))6 neuraminidase (NA) gene ...........................................................................C....A..G....C................................A.A..........T....G.........A....................G.......T..................A..G.................AT..............C.........................................................A..A..C...........................G....................T.................C...... 22 22 , 22 22 160:>KF790346,A/Utah/07/2013(H3N2))6 neuraminidase (NA) gene 161 >KF789920,A/Maryland/30/2012(H3N2))6 neuraminidase (NA) gene ............................................G.............A................C....A..G....C......T.......T.................A.T..........T....G..............................G.......T..................A....................AT..............C.....................................C...................A..A..C.......T...................G....................T.................C...... 26 26 , 26 26 161:>KF789920,A/Maryland/30/2012(H3N2))6 neuraminidase (NA) gene 162 >KF790437,A/Oregon/11/2012(H3N2))6 neuraminidase (NA) gene ............................................G..............................C....A..G....C..............T.................A....R.......T....GC.............................G.......T..................A....................AT..............C................................................A........A..A..C.......T.................A.G....................T.................C...... 26 26 , 26 26 162:>KF790437,A/Oregon/11/2012(H3N2))6 neuraminidase (NA) gene 163 >KF790266,A/Oklahoma/05/2012(H3N2))6 neuraminidase (NA) gene ............................................G..............................C....A..G....C................................A............T....GC.............................G.......T..................A....................AT..............C..................................................T......A..A..C.......T....Y............A.G....................T..A..........Y...C...... 27 27 , 27 27 163:>KF790266,A/Oklahoma/05/2012(H3N2))6 neuraminidase (NA) gene 164 >KF789876,A/New Hampshire/21/2012(H3N2))6 neuraminidase (NA) gene ...........................................................................C....A..G....C................................A............T....G..............................G.......T..................A....................AT..............C.........................................................A..A..C...........................G....................T.................C...... 19 19 , 19 19 164:>KF789876,A/New Hampshire/21/2012(H3N2))6 neuraminidase (NA) gene 165 >KF789584,A/Florida/46/2012(H3N2))6 neuraminidase (NA) gene ...........................................................................C....A..G....C................................A............T....G..............................G.......T..................A....................AT..............C.........................................................A..A..C...........................G....................T.................C...... 19 19 , 19 19 165:>KF789584,A/Florida/46/2012(H3N2))6 neuraminidase (NA) gene 166 >KF790471,A/North Dakota/01/2013(H3N2))6 neuraminidase (NA) gene ...........................................................................C....A..G....C................................A............T....G..............................G.......T..................A....................AT..............C.........................................................A..A..C...........................G....................T.................C...... 19 19 , 19 19 166:>KF790471,A/North Dakota/01/2013(H3N2))6 neuraminidase (NA) gene 167 >KF789835,A/Wisconsin/06/2013(H3N2))6 neuraminidase (NA) gene ...........................................................................C....A..G....C................................A............T....G..............................G.......T..................A....................AT..............C.........................................................A..A..C...........................G....................T.................C...... 19 19 , 19 19 167:>KF789835,A/Wisconsin/06/2013(H3N2))6 neuraminidase (NA) gene 168 >KF789821,A/Connecticut/13/2012(H3N2))6 neuraminidase (NA) gene ...........................................................................C....A..G....C................................A............T....G..............................G.......T..................A....................AT..............C.........................................................A..A..C...........................G....................T.................C...... 19 19 , 19 19 168:>KF789821,A/Connecticut/13/2012(H3N2))6 neuraminidase (NA) gene 169 >KF790289,A/Iowa/15/2012(H3N2))6 neuraminidase (NA) gene ...........................................................................C....A..G....C................................A............T....G..............................G...A...T..................A....................AT..............C.................A.......................................A..A..C...........................G....................T.................C...... 21 21 , 21 21 169:>KF790289,A/Iowa/15/2012(H3N2))6 neuraminidase (NA) gene 170 >KF789797,A/Iowa/22/2012(H3N2))6 neuraminidase (NA) gene ...........................................................................C....A..G....C................................A...R........T....G..............................G...A...T..................A....................AT..............C.........................................................A..A..C...........................G....................T.................C...... 21 21 , 21 21 170:>KF789797,A/Iowa/22/2012(H3N2))6 neuraminidase (NA) gene 171 >KF790383,A/New Mexico/24/2012(H3N2))6 neuraminidase (NA) gene ...........................................................................C....A..G.G..C................................A...R........T....G..............................G.......T..................A....................AT..............C.........................................................A..A..C...........................G....................T.................C...... 21 21 , 21 21 171:>KF790383,A/New Mexico/24/2012(H3N2))6 neuraminidase (NA) gene 172 >KF790306,A/Nebraska/15/2012(H3N2))6 neuraminidase (NA) gene ...........C...............................................................C....A..G....C................................A...R........T....G..............................G.......T..................A....................AT..............C.........................................................A..A..C...........................G....................T.................C...... 21 21 , 21 21 172:>KF790306,A/Nebraska/15/2012(H3N2))6 neuraminidase (NA) gene 173 >KF790421,A/Nebraska/03/2013(H3N2))6 neuraminidase (NA) gene .......A...C...............................................................C....A..G....C................................A............T....G..............................G.......T..................A....................AT..............C.........................................................A..A..C...........................G.........A..........T.................C...... 22 22 , 22 22 173:>KF790421,A/Nebraska/03/2013(H3N2))6 neuraminidase (NA) gene 174 >KF790476,A/Iowa/01/2013(H3N2))6 neuraminidase (NA) gene ...........................................................................C....A..G....C................................A.A....A.....T....G..............................G.......T..................A....................AT..............C.........................................................A..A..C...........................G.........A..........T.................C...... 22 22 , 22 22 174:>KF790476,A/Iowa/01/2013(H3N2))6 neuraminidase (NA) gene 175 >KF789878,A/Virginia/03/2013(H3N2))6 neuraminidase (NA) gene ...........................................................................C....A..G....C.................C..............A.A..........T....G..............................G.......T..................A....................AT..............C.........................................................A..A..C...........................G....................T.................C...... 21 21 , 21 21 175:>KF789878,A/Virginia/03/2013(H3N2))6 neuraminidase (NA) gene 176 >KF790128,A/North Carolina/06/2013(H3N2))6 neuraminidase (NA) gene ...........................................................................C....A..G....C.................C..............A.Y..........T....G..............................G.......T..................A....................AT..............C..............C..........................................A..AT.C...........................G....................T.................C...... 23 23 , 23 23 176:>KF790128,A/North Carolina/06/2013(H3N2))6 neuraminidase (NA) gene 177 >KF790382,A/Minnesota/04/2013(H3N2))6 neuraminidase (NA) gene ...........................................................................C....A..G....C.................C..............A............T....G..............................G.......T..................A........G...........AT..............C..............C..........................................A..A..C...........................G....................T.................C...... 22 22 , 22 22 177:>KF790382,A/Minnesota/04/2013(H3N2))6 neuraminidase (NA) gene 178 >KF789962,A/Rhode Island/02/2013(H3N2))6 neuraminidase (NA) gene .......................................................................T...C....A..G....C...........A.....C..............A............T....G..............................G.......T..................A....................AT..............C.........................................................A..A..C...........................G....................T.................C...... 22 22 , 22 22 178:>KF789962,A/Rhode Island/02/2013(H3N2))6 neuraminidase (NA) gene 179 >KF790012,A/Massachusetts/07/2013(H3N2))6 neuraminidase (NA) gene ...........................................................................C....A..G....C............T....C......M.......A............T....G..............................G.......T..................A....................AT..............C.........................................................A..A..C...........................G....................T.................C...... 22 22 , 22 22 179:>KF790012,A/Massachusetts/07/2013(H3N2))6 neuraminidase (NA) gene 180 >KF790146,A/Arkansas/13/2013(H3N2))6 neuraminidase (NA) gene ...........................................................................C....A..G....C............T....CT.............A............T....G..............................G.......T..................A....................AT..............C.........................................................A.AA..C...........................G....................T.....C...........C...... 24 24 , 24 24 180:>KF790146,A/Arkansas/13/2013(H3N2))6 neuraminidase (NA) gene 181 >KF789733,A/New York/04/2013(H3N2))6 neuraminidase (NA) gene ...........................................................................C....A..G....C................TCT.............A...R........T....G..............................G.......T..................A....................AT..............C.........................................................A..A..C...........................G....................T.....C...........C...... 24 24 , 24 24 181:>KF789733,A/New York/04/2013(H3N2))6 neuraminidase (NA) gene 182 >KF790484,A/Arkansas/06/2013(H3N2))6 neuraminidase (NA) gene ...........................................................................C....A..G....C.................CT.............A...R........T....G..............................G.......T..................A....................AT..............C.........................................................A.AA..C...........................G....................T.....C...........C...... 24 24 , 24 24 182:>KF790484,A/Arkansas/06/2013(H3N2))6 neuraminidase (NA) gene 183 >KF789979,A/Arkansas/04/2013(H3N2))6 neuraminidase (NA) gene ...........................................................................C....A..G....C.................CT.............A...R........T....G..............................G.......T..................A....................AT..............C.........................................................A.AA..C...........................G....................T.....C...........C...... 24 24 , 24 24 183:>KF789979,A/Arkansas/04/2013(H3N2))6 neuraminidase (NA) gene 184 >KF789980,A/Arkansas/03/2013(H3N2))6 neuraminidase (NA) gene ...........................................................................C....A..G....C.................CT.............A...R........T....G..............................G.......T..................A....................AT..............C.........................................................A.AA..C...........................G....................T.....C...........C...... 24 24 , 24 24 184:>KF789980,A/Arkansas/03/2013(H3N2))6 neuraminidase (NA) gene 185 >KF790033,A/Arkansas/07/2013(H3N2))6 neuraminidase (NA) gene .........G.................................................................C....A..G....C.................CT.............A...R........T....G..............................G.......T..................A....................AT..............C.........................................................A.AA..C...........................G....................T.....C...........C...... 25 25 , 25 25 185:>KF790033,A/Arkansas/07/2013(H3N2))6 neuraminidase (NA) gene 186 >KF790511,A/Maryland/33/2012(H3N2))6 neuraminidase (NA) gene ...G.................................................................T.....C....A..G....C................................A...R........T....G..............................G.......T..................A....................AT..............C......................C..................................A.AA..C...........................G....................T.................C...... 24 24 , 24 24 186:>KF790511,A/Maryland/33/2012(H3N2))6 neuraminidase (NA) gene 187 >KF790121,A/North Carolina/02/2013(H3N2))6 neuraminidase (NA) gene ...........................................................................C....A..G....C................................A...R........T....G...........................A..G.......T..................A....................AT..............C......................C..................................A..A..C...........................G....................T.................C...... 22 22 , 22 22 187:>KF790121,A/North Carolina/02/2013(H3N2))6 neuraminidase (NA) gene 188 >KF789622,A/Oklahoma/06/2013(H3N2))6 neuraminidase (NA) gene ...........................................................................C....A..G....C................................A...R........T....G...........................A..G.......T..................A....................AT..............C......................C..................................A..A..C...........................G....................T.................C...... 22 22 , 22 22 188:>KF789622,A/Oklahoma/06/2013(H3N2))6 neuraminidase (NA) gene 189 >KF790013,A/New Mexico/08/2013(H3N2))6 neuraminidase (NA) gene ...........................................................................C....A..G....C................................A....R.......T....G...........................A..G.......T.................TA....................AT..............C......................C...............................A..A..A..C...........................G....................T.................C...... 24 24 , 24 24 189:>KF790013,A/New Mexico/08/2013(H3N2))6 neuraminidase (NA) gene 190 >KF789676,A/Missouri/13/2012(H3N2))6 neuraminidase (NA) gene ...G.................................................T.....................C....A..G....C................................A....R.......T....G..............................G.......T..................A....................AT..............C......................................................A..A..A..C...........................G....................T.................C...... 23 23 , 23 23 190:>KF789676,A/Missouri/13/2012(H3N2))6 neuraminidase (NA) gene 191 >KF789702,A/Tennessee/02/2013(H3N2))6 neuraminidase (NA) gene .....................................................T.....................C....A..G....C...............C................A....RC......T....G..............................G.......T..................A....................AT..............C......................................................A..A..A..C...........................G.A..................T.................C...... 25 25 , 25 25 191:>KF789702,A/Tennessee/02/2013(H3N2))6 neuraminidase (NA) gene 192 >KF790020,A/Michigan/03/2013(H3N2))6 neuraminidase (NA) gene .....................................................T.....................C....A..G....C...............C................A............T....G..............................G.......T..................A....................AT..............C......................................................A..A..A..C.......A...................G....................T.................C...... 23 23 , 23 23 192:>KF790020,A/Michigan/03/2013(H3N2))6 neuraminidase (NA) gene 193 >KF790530,A/Kansas/01/2013(H3N2))6 neuraminidase (NA) gene .....................................................T.....................C....A..G....C................................A............T....G..............................G.......T..................A....................AT..............C......................................................A..A..A..C...........................G....................T.................C...... 21 21 , 21 21 193:>KF790530,A/Kansas/01/2013(H3N2))6 neuraminidase (NA) gene 194 >KF790359,A/Mississippi/01/2013(H3N2))6 neuraminidase (NA) gene .....................................................T.....................C....A..G....C................................A............T....G..............................G.......T..................A....................AT..............C......................................................A..A..A..C...........................G....................T.................C...... 21 21 , 21 21 194:>KF790359,A/Mississippi/01/2013(H3N2))6 neuraminidase (NA) gene 195 >KF790390,A/Wisconsin/05/2013(H3N2))6 neuraminidase (NA) gene .....................................................T.....................C....A..G....C................................A...........GT....G..............................G.......T..................A....................AT..............C......................................................A..A..A..C...........................G....................T.................C...... 22 22 , 22 22 195:>KF790390,A/Wisconsin/05/2013(H3N2))6 neuraminidase (NA) gene 196 >KF789789,A/Nevada/28/2012(H3N2))6 neuraminidase (NA) gene .....................................................T...T.................C....A..G....C................................A............T....G..............................G.......T..................A...................TAT..............C......................................................A..A..A..C...........................G....................T.................C...... 23 23 , 23 23 196:>KF789789,A/Nevada/28/2012(H3N2))6 neuraminidase (NA) gene 197 >KF789617,A/Vermont/02/2013(H3N2))6 neuraminidase (NA) gene .....................................................T.....................C....A..G....C................................A............T....G..............................G.......T..................A...................TATT.............C......................................................A..A..A..C...........................G....................T.................C...... 23 23 , 23 23 197:>KF789617,A/Vermont/02/2013(H3N2))6 neuraminidase (NA) gene 198 >KF790071,A/Colorado/01/2013(H3N2))6 neuraminidase (NA) gene .....................................................T.....................C....A..G....C................................A............T....G..............................G.......T................G.A............G.......AT..............C......................................................A..A..A..C...........................G....................T.................C...... 23 23 , 23 23 198:>KF790071,A/Colorado/01/2013(H3N2))6 neuraminidase (NA) gene 199 >KF789632,A/Kansas/02/2013(H3N2))6 neuraminidase (NA) gene .....................................................T.....................C....A..G....C................................A............T....G..............................G.......T..................A....................AT..............C......................................................A..A..A..C........................A..G.....T..............T.................C...... 23 23 , 23 23 199:>KF789632,A/Kansas/02/2013(H3N2))6 neuraminidase (NA) gene 200 >KF790162,A/Wisconsin/38/2012(H3N2))6 neuraminidase (NA) gene .....................................................T.....................C....A..G....C................................A............T....G..............................G.......T..................A....................AT..............C......................................................A..A..A..C...........................G.....T..............T.................C...... 22 22 , 22 22 200:>KF790162,A/Wisconsin/38/2012(H3N2))6 neuraminidase (NA) gene 201 >KF789817,A/Illinois/15/2012(H3N2))6 neuraminidase (NA) gene .....................................................T.....................C....A..G....C................................A............T....G..............................G.......T..................A....................AT..............C......................................................A..A..A..C...........................G.....T..............T.................C...... 22 22 , 22 22 201:>KF789817,A/Illinois/15/2012(H3N2))6 neuraminidase (NA) gene 202 >KF789963,A/Illinois/01/2013(H3N2))6 neuraminidase (NA) gene .....................................................T.....................C....A..G....C................................A...R........T....G..............................G.......T..................A....................AT..............C......................................................A..A..A..C...........................G.....T..............T.................C...... 23 23 , 23 23 202:>KF789963,A/Illinois/01/2013(H3N2))6 neuraminidase (NA) gene 203 >KF789734,A/Minnesota/03/2013(H3N2))6 neuraminidase (NA) gene .....................................................T.....................C....A..G....C................................A...R........T....G..............................G.......T..................A....................AT..............C......................................................A..A..A..C...........................G.....T..............T.................C...... 23 23 , 23 23 203:>KF789734,A/Minnesota/03/2013(H3N2))6 neuraminidase (NA) gene 204 >KF790456,A/Louisiana/01/2013(H3N2))6 neuraminidase (NA) gene .....................................................T.....................C....A..G....C................................A...R........T....G..............................G.......T..................A....................AT..............C......................................................A..A..A..C...........................G....RT..............T.................C...... 24 24 , 24 24 204:>KF790456,A/Louisiana/01/2013(H3N2))6 neuraminidase (NA) gene 205 >KF790374,A/Ohio/92/2012(H3N2))6 neuraminidase (NA) gene .....................................................T.....................C....A..G....C................................A...R........T....G..............................G.......T..................A....................AT..............C......................................................A..A..A..C...........................G....................T.................C...... 22 22 , 22 22 205:>KF790374,A/Ohio/92/2012(H3N2))6 neuraminidase (NA) gene 206 >KF789566,A/California/14/2013(H3N2))6 neuraminidase (NA) gene .....................................................T.....................C....A..G....C................................A...R........T....G..............................G.......T..................A....................AT..............C......................................................A..A..A..C...........................G....................T.................C...... 22 22 , 22 22 206:>KF789566,A/California/14/2013(H3N2))6 neuraminidase (NA) gene 207 >KF790322,A/Pennsylvania/02/2013(H3N2))6 neuraminidase (NA) gene .....................................................T.....................C....A..G....C................................A...R........T....G..............................G.......T..................A....................AT..............C......................................................A..A..A..C...........................G....................T.................C...... 22 22 , 22 22 207:>KF790322,A/Pennsylvania/02/2013(H3N2))6 neuraminidase (NA) gene 208 >KF790442,A/Wisconsin/41/2012(H3N2))6 neuraminidase (NA) gene .....................................................T.....................C....A..G....C................................A...R........T....G..............................G.......T..................A....................AT..............C......................................................A..A..A..C...........................G....................T.................C...... 22 22 , 22 22 208:>KF790442,A/Wisconsin/41/2012(H3N2))6 neuraminidase (NA) gene 209 >KF789638,A/Connecticut/01/2013(H3N2))6 neuraminidase (NA) gene .....................................................T.....................C....A..G....C................................A...R........T....G..............................G.......T..................A....................AT..............C......................................................A..A..A..C...........................G....................T.................C...... 22 22 , 22 22 209:>KF789638,A/Connecticut/01/2013(H3N2))6 neuraminidase (NA) gene 210 >KF790460,A/California/10/2013(H3N2))6 neuraminidase (NA) gene .....................................................T.....................C....A..G....C................................A...R........T....G..............................G.......T..................A....................AT..............C......................................................A..A..A..C...........................G....................T.................C...... 22 22 , 22 22 210:>KF790460,A/California/10/2013(H3N2))6 neuraminidase (NA) gene 211 >KF789625,A/Louisiana/02/2013(H3N2))6 neuraminidase (NA) gene .....................................................T.....................C....A..G....C................................A...R........T....G..............................G.......T..................A....................AT..............C...............................A......................A..A..A..C...........................G....................T.................C...... 23 23 , 23 23 211:>KF789625,A/Louisiana/02/2013(H3N2))6 neuraminidase (NA) gene 212 >KF789705,A/Colorado/21/2012(H3N2))6 neuraminidase (NA) gene .....................................................T.....................C....A..G....C................................A.A..........T....G..............................G.......T..................A....................AT..............C............................C.........................A..A..A..C...........................G....................T.................C...... 23 23 , 23 23 212:>KF789705,A/Colorado/21/2012(H3N2))6 neuraminidase (NA) gene 213 >KF790335,A/District Of Columbia/01/2012(H3N2))6 neuraminidase (NA) gene .....................................................T.....................C....A..G....C................................A.M..........T....G..............................G.......T..................A....................AT..............C......................................................A..A..A..C...........................G....................T.................C...... 22 22 , 22 22 213:>KF790335,A/District Of Columbia/01/2012(H3N2))6 neuraminidase (NA) gene 214 >KF790458,A/New Mexico/04/2013(H3N2))6 neuraminidase (NA) gene .....................................................T............G........C....A..G....C...A............................A.Y..........T....G.....A........................G.......T..................A....................AT..............C......................................................A..A..A..C...........................G....................T.................C...... 25 25 , 25 25 214:>KF790458,A/New Mexico/04/2013(H3N2))6 neuraminidase (NA) gene 215 >KF789657,A/Oregon/01/2013(H3N2))6 neuraminidase (NA) gene .....................................................T............G........C....A..G....C................................A............T....G..............................G.......T..................A....................AT..............C......................................................A..A..A..C................................................T.................C...... 21 21 , 21 21 215:>KF789657,A/Oregon/01/2013(H3N2))6 neuraminidase (NA) gene 216 >KF789655,A/Oregon/01/2013(H3N2))6 neuraminidase (NA) gene .....................................................T............G........C....A..G....C................................A............T....G..............................G.......T..................A....................AT..............C......................................................A..A..A..C................................................T.................C...... 21 21 , 21 21 216:>KF789655,A/Oregon/01/2013(H3N2))6 neuraminidase (NA) gene 217 >KF790284,A/North Dakota/05/2012(H3N2))6 neuraminidase (NA) gene .....................................................T................T....C....A..G....C................................A............T....G..............................G.......T..................A....................AT..............C......................................................A..A..A..C...........................G....................T.................C...... 22 22 , 22 22 217:>KF790284,A/North Dakota/05/2012(H3N2))6 neuraminidase (NA) gene 218 >KF790350,A/Mississippi/02/2013(H3N2))6 neuraminidase (NA) gene .....................................................T.....................C....A..G....C................................A..C.........T....G..............................G.......T..................A....................AT..............C......................................................A..A..A..C...........................G....................T.................C...... 22 22 , 22 22 218:>KF790350,A/Mississippi/02/2013(H3N2))6 neuraminidase (NA) gene 219 >KF789758,A/Michigan/32/2012(H3N2))6 neuraminidase (NA) gene .....................................................T.....................C....A..G....C................................A..C.........T....G..............................G.......T..................A....................AT..............C......................................................A..A..A..C...........................G....................T.................C...... 22 22 , 22 22 219:>KF789758,A/Michigan/32/2012(H3N2))6 neuraminidase (NA) gene 220 >KF789881,A/Maine/11/2012(H3N2))6 neuraminidase (NA) gene .....................................................T.....................C....A..G....C................................A..CA........T....G.........A....................G.......T..................A....................AT..............C....................G.................................A..A..A..CA..........................G....................T...G.............C...... 27 27 , 27 27 220:>KF789881,A/Maine/11/2012(H3N2))6 neuraminidase (NA) gene 221 >KF790504,A/California/12/2013(H3N2))6 neuraminidase (NA) gene .....................................................T......G..............C....A..G....C.....................A..........A..CR........T....G..............................G.......T..................A....................AT..............C...................................A..................A..A..A..CA..........................G....................T.................C...... 27 27 , 27 27 221:>KF790504,A/California/12/2013(H3N2))6 neuraminidase (NA) gene 222 >KF790045,A/Georgia/03/2013(H3N2))6 neuraminidase (NA) gene ......................................T..............T.....................C....A..G....C................................A...R........T....G.C........................A...G....T..T..................A....................AT..........T...C..........................T..............................A..A..CA..........................G....................T.................C...... 28 28 , 28 28 222:>KF790045,A/Georgia/03/2013(H3N2))6 neuraminidase (NA) gene 223 >KF790139,A/Georgia/03/2013(H3N2))6 neuraminidase (NA) gene ......................................T..............T.....................C....A..G....C................................A............T....G.C........................A...G....T..T..................A....................AT..........T...C..........................T..............................A..A..CA..........................G....................T.................C...... 27 27 , 27 27 223:>KF790139,A/Georgia/03/2013(H3N2))6 neuraminidase (NA) gene 224 >KF789857,A/Kansas/04/2013(H3N2))6 neuraminidase (NA) gene .....................................................T.....................C....A..G....C................................A....R.......T....G.C..............A.............G....T..T..................A....................AT..............C.........................................................A..A..C...........................G....................T.................C...... 24 24 , 24 24 224:>KF789857,A/Kansas/04/2013(H3N2))6 neuraminidase (NA) gene 225 >KF790521,A/Kansas/11/2012(H3N2))6 neuraminidase (NA) gene .....................................................T.....................C....A..G.G..C................................A....R.......T....G.C.................................T..T..................A....................AT..............C.........................................................A..A..C...........................G....................T.................C...... 23 23 , 23 23 225:>KF790521,A/Kansas/11/2012(H3N2))6 neuraminidase (NA) gene 226 >KF790031,A/Nevada/05/2013(H3N2))6 neuraminidase (NA) gene .....................................................T.....................C....A..GT...C................................A...A........T....G.C............................G....T..T..................AG...................AT..............C.........................................................A..A..C...........................G....................T.................C...... 25 25 , 25 25 226:>KF790031,A/Nevada/05/2013(H3N2))6 neuraminidase (NA) gene 227 >KF790016,A/New Mexico/09/2013(H3N2))6 neuraminidase (NA) gene .....................................................T.....................C....A..G....C................................A...R........T....G.C............................G....T..T..................AG...................AT..............C.........................................................A..A..C...........................G....................T.................C...... 24 24 , 24 24 227:>KF790016,A/New Mexico/09/2013(H3N2))6 neuraminidase (NA) gene 228 >KF790468,A/California/22/2013(H3N2))6 neuraminidase (NA) gene ...................T.................................TA....................C....A..G....C................................A...R........T....G.C.T..........................G....T..T..................A...............C....AT..............C....................................G....................A..A..C..................C........G....................T.................C...... 29 29 , 29 29 228:>KF790468,A/California/22/2013(H3N2))6 neuraminidase (NA) gene 229 >KF790192,A/Alaska/04/2013(H3N2))6 neuraminidase (NA) gene ...................T.................................TA....................C....A..G....C................................A...R........T....G.C................A...........G....T..T..................A..G.................AT..............C.........................................................A..A..C..................C........G....................T.................C...... 28 28 , 28 28 229:>KF790192,A/Alaska/04/2013(H3N2))6 neuraminidase (NA) gene 230 >KF789855,A/Minnesota/05/2013(H3N2))6 neuraminidase (NA) gene ......................G..............................T.....................C....A..G....C................................A...R........T....G.C................A..........GG.G..T..T..................A....................AT..............C.........................................................A..A..C...........................G....................T.................C...... 27 27 , 27 27 230:>KF789855,A/Minnesota/05/2013(H3N2))6 neuraminidase (NA) gene 231 >KF790150,A/Alabama/07/2013(H3N2))6 neuraminidase (NA) gene ......................G..............................T.....................C....A..G....C................................A....R.......T....G..............................G.......T..................A.........T..........AT..............C....................................................G....A..A.AC...........................G....................T.................C...... 25 25 , 25 25 231:>KF790150,A/Alabama/07/2013(H3N2))6 neuraminidase (NA) gene 232 >KF789561,A/Nevada/04/2013(H3N2))6 neuraminidase (NA) gene ......................G..............................T.....................C....A..G....C................................A...R........T....G.................A............G.......T..................A.........T..........AT..............C....................................................G....A..A.AC...........................G....................T.................C...... 26 26 , 26 26 232:>KF789561,A/Nevada/04/2013(H3N2))6 neuraminidase (NA) gene 233 >KF789592,A/Indiana/164/2012(H3N2))6 neuraminidase (NA) gene .....................................................T.....................C....A..G....C................................A...R........T....G..............................GC......T..................A.........T..........AT..............C....................................................G....A..A..C................C..........G....................T.................C...... 25 25 , 25 25 233:>KF789592,A/Indiana/164/2012(H3N2))6 neuraminidase (NA) gene 234 >KF790259,A/Indiana/162/2012(H3N2))6 neuraminidase (NA) gene .....................................................T.....................C....A..G....C................................A...R........T....G..............................GC......T..................A.........T..........AT.........A....C....................................................G....A..A..C................C..........G....................T.................C...... 26 26 , 26 26 234:>KF790259,A/Indiana/162/2012(H3N2))6 neuraminidase (NA) gene 235 >KF790103,A/Colorado/18/2012(H3N2))6 neuraminidase (NA) gene .....................................................T.....................C.G..A..G....C................................A...R........T....G..............................G.......T..................A.........T..........AT..............C...............................................G....G....A..A..C.......................A...G....................T.................C...... 26 26 , 26 26 235:>KF790103,A/Colorado/18/2012(H3N2))6 neuraminidase (NA) gene 236 >KF790199,A/Colorado/18/2012(H3N2))6 neuraminidase (NA) gene .....................................................T.....................C.G..A..G....C................................A............T....G..............................G.......T..................A.........T..........AT..............C...............................................G....G....A..A..C.......................A...G....................T.................C...... 25 25 , 25 25 236:>KF790199,A/Colorado/18/2012(H3N2))6 neuraminidase (NA) gene 237 >KF790523,A/California/11/2013(H3N2))6 neuraminidase (NA) gene .....................................................T.....................C....A..G....C.............................A..A...A........T....G.......................C......G.......T..................A.........T..........AT..............C.........................................................A..A..C...........................G...................GT.................C...... 25 25 , 25 25 237:>KF790523,A/California/11/2013(H3N2))6 neuraminidase (NA) gene 238 >KF789563,A/California/13/2013(H3N2))6 neuraminidase (NA) gene .....................................................T..T..................C....A..G....C.............................A..A...R........T....G..............................G.......T..................A.........T..........AT..............C............C...............................A............A..A..C...........................G....................T.................C...... 26 26 , 26 26 238:>KF789563,A/California/13/2013(H3N2))6 neuraminidase (NA) gene 239 >KF790529,A/Idaho/02/2013(H3N2))6 neuraminidase (NA) gene ......................................A..............T.....................C....A..G....C.............................A..A...R........T....G..............................G.......T..................A.........T..........AT..............C............C............................................A..A..C...........................G....................T.................C...... 25 25 , 25 25 239:>KF790529,A/Idaho/02/2013(H3N2))6 neuraminidase (NA) gene 240 >KF789601,A/West Virginia/20/2012(H3N2))6 neuraminidase (NA) gene .....................................................T.....................C....A..G....C.............................A..A...R........T....G..............................G.......T..................A.........T..........AT..............C............C............................................A..A..C...........................G....................T.................C...... 24 24 , 24 24 240:>KF789601,A/West Virginia/20/2012(H3N2))6 neuraminidase (NA) gene 241 >KF789913,A/California/46/2012(H3N2))6 neuraminidase (NA) gene .....................................................T.....................C....A..G....C.............................A..A...R........T....G..............................G.......T..................A.........T..........AT..............C............C............................................A..A..C...........................G....................T.................C...... 24 24 , 24 24 241:>KF789913,A/California/46/2012(H3N2))6 neuraminidase (NA) gene 242 >KF789724,A/Missouri/04/2013(H3N2))6 neuraminidase (NA) gene .....................................................T.....................C....A..G....C.............................A..A...R........T....G..............................G.......T..................A.........T..........AT..............C............C............................................A..A..C...........................G....................T.................C...... 24 24 , 24 24 242:>KF789724,A/Missouri/04/2013(H3N2))6 neuraminidase (NA) gene 243 >KF789764,A/South Dakota/12/2012(H3N2))6 neuraminidase (NA) gene .....................................................T.....................C....A..G....C.............................A..A...R........T....G..............................G.......T..................A.........T..........AT..............C............C............................................A..A..C...........................G....................T.................C...... 24 24 , 24 24 243:>KF789764,A/South Dakota/12/2012(H3N2))6 neuraminidase (NA) gene 244 >KF789589,A/North Carolina/24/2012(H3N2))6 neuraminidase (NA) gene ....................................T................T.....................C....A..G....C.............................A..A...R........T....G..............................G.......T..................A.........T..........AT..............C............C............................................A..A..C...........................G....................T.................C...... 25 25 , 25 25 244:>KF789589,A/North Carolina/24/2012(H3N2))6 neuraminidase (NA) gene 245 >KF790477,A/South Dakota/01/2013(H3N2))6 neuraminidase (NA) gene ................................A....................T.....................C....A..G....C.............................A..A...R........T....G..............................G.......T..................A.........T..........AT..............C............C............................................A..A..C....A......................G....................T.................C...... 26 26 , 26 26 245:>KF790477,A/South Dakota/01/2013(H3N2))6 neuraminidase (NA) gene 246 >KF789669,A/Nebraska/11/2012(H3N2))6 neuraminidase (NA) gene ................................A....................T.....................C....A..G....C.............................A..A...R........T....G..............................G.......T..................A.........T..........AT..............C............C............................................A..A..C....A......................G....................T.................C...... 26 26 , 26 26 246:>KF789669,A/Nebraska/11/2012(H3N2))6 neuraminidase (NA) gene 247 >KF789936,A/North Dakota/08/2012(H3N2))6 neuraminidase (NA) gene ................................A....................T.....................C....A..G....C.............................A..A............T....G..............................G.......T..................A.........T..........AT..............C............C............................................A..A..C....A......................G....................T.................C...... 25 25 , 25 25 247:>KF789936,A/North Dakota/08/2012(H3N2))6 neuraminidase (NA) gene 248 >KF790007,A/South Dakota/16/2012(H3N2))6 neuraminidase (NA) gene .....................................................T.....................C....A..G....C.............................A..A............T....G..............................G.......T..................A.........T..........AT..............C............C............................................A..A..C....A......................G....................T.................C...... 24 24 , 24 24 248:>KF790007,A/South Dakota/16/2012(H3N2))6 neuraminidase (NA) gene 249 >KF790313,A/New Mexico/23/2012(H3N2))6 neuraminidase (NA) gene ................C....................................T.....................C....A..G....C.............................A..A.....A......T....G..............................G.......T..................A.........T..........AT..............C............C............................................A..A..C....A......................G....................T.................C...... 26 26 , 26 26 249:>KF790313,A/New Mexico/23/2012(H3N2))6 neuraminidase (NA) gene 250 >KF790441,A/Wyoming/20/2012(H3N2))6 neuraminidase (NA) gene .....................................................T.....................C....A..G....C.............................A..A............T....G..............................G.......T..................A.........T..........AT..............C............C...A........................................A..A..C...........................G....................C.................C...... 24 24 , 24 24 250:>KF790441,A/Wyoming/20/2012(H3N2))6 neuraminidase (NA) gene 251 >KF789679,A/North Carolina/05/2013(H3N2))6 neuraminidase (NA) gene .....................................................T.....................C....A..G....C....................G......W.A..A............T....G..............................G.......T..................A.........T..........AT........R.....C............C............................................A..A..C...........................G....................T.................C...... 26 26 , 26 26 251:>KF789679,A/North Carolina/05/2013(H3N2))6 neuraminidase (NA) gene 252 >KF790133,A/New York/03/2013(H3N2))6 neuraminidase (NA) gene .....................................................T.....................C....A..G....C....................G........A..A............T....G..............................G.......T..................A.........T..........AT..............C............C............................................A..A..C...........................G....................T.................C...... 24 24 , 24 24 252:>KF790133,A/New York/03/2013(H3N2))6 neuraminidase (NA) gene 253 >KF789765,A/Ohio/102/2012(H3N2))6 neuraminidase (NA) gene .....................................................T.....................C....A..G....C.............................A..A............T....G......A.......................G.......T..................A.........T..........AT..............C............C............................................A..A..C...........................G....................T.................C...... 24 24 , 24 24 253:>KF789765,A/Ohio/102/2012(H3N2))6 neuraminidase (NA) gene 254 >KF789721,A/Vermont/19/2012(H3N2))6 neuraminidase (NA) gene .....................................................T.....................C....A..G....C.............................A..A............T....G..............................G.......T..................A.........T..........AT..............C............C............................................A..A..C...........................G....................T.................C...... 23 23 , 23 23 254:>KF789721,A/Vermont/19/2012(H3N2))6 neuraminidase (NA) gene 255 >KF789718,A/Ohio/97/2012(H3N2))6 neuraminidase (NA) gene .....................................................T.....................C....A..G....C.............................A..A............T....G..............................G.......T..................A.........T..........AT..............C............C............................................A..A..C...........................G....................T.................C...... 23 23 , 23 23 255:>KF789718,A/Ohio/97/2012(H3N2))6 neuraminidase (NA) gene 256 >KF789951,A/Ohio/01/2013(H3N2))6 neuraminidase (NA) gene .....................................................T.....................C....A..G....C.............................A..A............T....G..............................G.......T..................A.........T..........AT..............C............C............................................A..A..C...........................G....................T.................C...... 23 23 , 23 23 256:>KF789951,A/Ohio/01/2013(H3N2))6 neuraminidase (NA) gene 257 >KF790367,A/Ohio/01/2013(H3N2))6 neuraminidase (NA) gene .....................................................T.....................C....A..G....C.............................A..A............T....G..............................G.......T..................A.........T..........AT..............C............C............................................A..A..C...........................G....................T.................C...... 23 23 , 23 23 257:>KF790367,A/Ohio/01/2013(H3N2))6 neuraminidase (NA) gene 258 >KF790469,A/Nevada/02/2013(H3N2))6 neuraminidase (NA) gene .....................................................T.....................C....A..G....C.............................A..A............T....G..............................G.......T..................A.........T..........AT..............C............C............................................A..A..C...........................G....................T.................C...... 23 23 , 23 23 258:>KF790469,A/Nevada/02/2013(H3N2))6 neuraminidase (NA) gene 259 >KF789811,A/South Dakota/12/2012(H3N2))6 neuraminidase (NA) gene .....................................................T.....................C....A..G....C.............................A..A............T....G..............................G.......T..................A.........T..........AT..............C............C............................................A..A..C...........................G....................T.................C...... 23 23 , 23 23 259:>KF789811,A/South Dakota/12/2012(H3N2))6 neuraminidase (NA) gene 260 >KF789686,A/South Dakota/10/2012(H3N2))6 neuraminidase (NA) gene .....................................................T.....................C....A..G....C.............................A..A............T....G..............................G.......T..................A.........T..........AT..............C............C............................................A..A..C...........................G....................T.................C...... 23 23 , 23 23 260:>KF789686,A/South Dakota/10/2012(H3N2))6 neuraminidase (NA) gene 261 >KF790131,A/Missouri/04/2013(H3N2))6 neuraminidase (NA) gene .....................................................T.....................C....A..G....C.............................A..A............T....G..............................G.......T..................A.........T..........AT..............C............C............................................A..A..C...........................G....................T.................C...... 23 23 , 23 23 261:>KF790131,A/Missouri/04/2013(H3N2))6 neuraminidase (NA) gene 262 >KF790393,A/Idaho/01/2013(H3N2))6 neuraminidase (NA) gene .....................................................T.....................C....A..G....C.............................A..A....G.......T....G..............................G.......T..................A.........T..........AT...G..........C............C............................................A..A..C...........................G....................T.................C...... 25 25 , 25 25 262:>KF790393,A/Idaho/01/2013(H3N2))6 neuraminidase (NA) gene 263 >KF789792,A/South Dakota/14/2012(H3N2))6 neuraminidase (NA) gene .....................................................T.....................C....A..G....C.............................A..A....R.......T....G..............................G.......T..................A.........T..........AT..............C............C............................................A..A..C...........................G....................T.................C...... 24 24 , 24 24 263:>KF789792,A/South Dakota/14/2012(H3N2))6 neuraminidase (NA) gene 264 >KF790166,A/Michigan/25/2012(H3N2))6 neuraminidase (NA) gene .....................A...............................T.....................C....A..G....C.............................A..A............T....G..............................G.......T..................A.........T..........AT..............C............C............................................A..A..C...........................G....................T.................C...... 24 24 , 24 24 264:>KF790166,A/Michigan/25/2012(H3N2))6 neuraminidase (NA) gene 265 >KF790055,A/South Dakota/15/2012(H3N2))6 neuraminidase (NA) gene .....................................................T.....................C....A..G....C.............................A..A............T....G..............................G.......T..................A.........T..........AT..............C............C............................................A..A..C...........................G....................T........................ 22 22 , 22 22 265:>KF790055,A/South Dakota/15/2012(H3N2))6 neuraminidase (NA) gene 266 >KF789820,A/Washington/62/2012(H3N2))6 neuraminidase (NA) gene .....................................................T.....................C....A..G....C.............................A..A.A..........T....G..............................G.......T..................A.........T..........AT..............C............C............................................A..A..C...........................G....................T.................C...... 24 24 , 24 24 266:>KF789820,A/Washington/62/2012(H3N2))6 neuraminidase (NA) gene 267 >KF790092,A/Iowa/13/2012(H3N2))6 neuraminidase (NA) gene .....................................................T.....................C....A..G....C.............................A..A.Y..........T....G..............................G.......T..................A.........T..........AT..............C............C............................................A..A..C...........................G....................T.................C...... 24 24 , 24 24 267:>KF790092,A/Iowa/13/2012(H3N2))6 neuraminidase (NA) gene 268 >KF789693,A/Massachusetts/11/2013(H3N2))6 neuraminidase (NA) gene ....................C......................C...............................C....A..G....C................................A.Y..........T...................................G.......T..................A....................AT..............C.........................................................A..A..C...........................G...............A....T...........T.....C.A.... 24 24 , 24 24 268:>KF789693,A/Massachusetts/11/2013(H3N2))6 neuraminidase (NA) gene 269 >KF790120,A/Oklahoma/03/2013(H3N2))6 neuraminidase (NA) gene ..............C..............................................C.............C....A..G....C..........................G.....A.Y..........T....G..............................G.......T..................A....................AT..............C.........................................................A..A..C...........................G....................T.................C...... 23 23 , 23 23 269:>KF790120,A/Oklahoma/03/2013(H3N2))6 neuraminidase (NA) gene 270 >KF789976,A/North Carolina/01/2013(H3N2))6 neuraminidase (NA) gene ..............C..............................................C.............C....A..G....C................................AT...........T....G..............................G.......T..................A....................AT..............C.........................................................A..A..C...........................G....................T.................C...... 22 22 , 22 22 270:>KF789976,A/North Carolina/01/2013(H3N2))6 neuraminidase (NA) gene 271 >KF790132,A/Virginia/06/2013(H3N2))6 neuraminidase (NA) gene ..............C..............................................C.............C....A..G....C................................A...R........T....G..............................G.......T...T..............A....................AT..............C.........................................................A..A..C...........................G....................T.................C...... 23 23 , 23 23 271:>KF790132,A/Virginia/06/2013(H3N2))6 neuraminidase (NA) gene 272 >KF790123,A/Louisiana/04/2013(H3N2))6 neuraminidase (NA) gene ..............C....................C.........................C.............C....A..G....C................................A...R........T....G..............................G.......T..................A....................AT..............C.........................................................A..A..C...........................G....................T.................C...... 23 23 , 23 23 272:>KF790123,A/Louisiana/04/2013(H3N2))6 neuraminidase (NA) gene 273 >KF790208,A/Alaska/04/2012(H3N2))6 neuraminidase (NA) gene ...................................C.......................................C....A..G....C................................A............T....G..............................G.......T..................A....................AT..............C.........................................................A..A..C...........................G....................T.................C...... 20 20 , 20 20 273:>KF790208,A/Alaska/04/2012(H3N2))6 neuraminidase (NA) gene 274 >KC892417,A/Alaska/04/2012(H3N2))6 neuraminidase (NA) gene ...................................C.......................................C....A..G....C................................A............T....G..............................G.......T..................A....................AT..............C.........................................................A..A..C...........................G....................T.................C...... 20 20 , 20 20 274:>KC892417,A/Alaska/04/2012(H3N2))6 neuraminidase (NA) gene 275 >KF790501,A/Texas/11/2013(H3N2))6 neuraminidase (NA) gene ..........................C........C.............................A.........C....A..G....C................................A............T....G..............................G.......T..................A....................AT..............C.........................................................A..A..C...........................G....................T.................C...... 22 22 , 22 22 275:>KF790501,A/Texas/11/2013(H3N2))6 neuraminidase (NA) gene 276 >KF789894,A/Wisconsin/51/2012(H3N2))6 neuraminidase (NA) gene ..........................C................................................C....A..G....C................................A............T....G..............................G.......T..................A....................AT..............C.........................................................A..A..C...........................G....................T.................C...... 20 20 , 20 20 276:>KF789894,A/Wisconsin/51/2012(H3N2))6 neuraminidase (NA) gene 277 >Index/32g12f1.c2,38-41 ...........................................................................C....A..G....C................................A............T....G...................G..........G.......T..................A....................AT..............C.........................................................A..A..C...........................G....................T.................C...... 20 20 , 20 20 277:>Index/32g12f1.c2,38-41 278 >KF789744,A/Montana/03/2013(H3N2))6 neuraminidase (NA) gene ...........................................................................C....A..G....C................................A............T....G..............................G.......T..................A....................AT..............C.........................................................A..A..C.........G.................G....................T.................C...... 20 20 , 20 20 278:>KF789744,A/Montana/03/2013(H3N2))6 neuraminidase (NA) gene 279 >KF789763,A/North Carolina/28/2012(H3N2))6 neuraminidase (NA) gene ...........................................................................C....A..G....C................................A............T....G..............................G.......T..................A....................AT..............C.........................................................A..A..C.........G.................GC...................T......A.A........C...... 23 23 , 23 23 279:>KF789763,A/North Carolina/28/2012(H3N2))6 neuraminidase (NA) gene 280 >KF790285,A/Iowa/14/2012(H3N2))6 neuraminidase (NA) gene ...........................................................................C....A..G....C................................A...A........T....G..............................G.......T..................A....................AT..............C.........................................................A..A..C...........................G....................T.................C...... 20 20 , 20 20 280:>KF790285,A/Iowa/14/2012(H3N2))6 neuraminidase (NA) gene 281 >KF789837,A/New Jersey/03/2013(H3N2))6 neuraminidase (NA) gene ...........................................................................C....A..G....C..................A.............A............T....G..............................G.......T..................A....................AT..............C.........................................................A..A..C...........................G....................T.................C...... 20 20 , 20 20 281:>KF789837,A/New Jersey/03/2013(H3N2))6 neuraminidase (NA) gene 282 >KF789599,A/Alabama/24/2012(H3N2))6 neuraminidase (NA) gene ................................A..........................................C....A..G....C................................A............T....G..............................G.......T..................A....................AT..............C.........................................................A..A..C...........................G....................T.................C...... 20 20 , 20 20 282:>KF789599,A/Alabama/24/2012(H3N2))6 neuraminidase (NA) gene 283 >KF789642,A/Kentucky/03/2013(H3N2))6 neuraminidase (NA) gene ................................A..........................................C....A..G....C................................A............T....G..............................G.......T..................A....................AT..............C.........................................................A..A..C...........................G....................T.................C...... 20 20 , 20 20 283:>KF789642,A/Kentucky/03/2013(H3N2))6 neuraminidase (NA) gene 284 >KF789588,A/Montana/13/2012(H3N2))6 neuraminidase (NA) gene ................................A..........................................C....A..G....C................................A............T....G..............................G.......T..................A....................AT..............C.........................................................A..A..C...........................G....................T.................C...... 20 20 , 20 20 284:>KF789588,A/Montana/13/2012(H3N2))6 neuraminidase (NA) gene 285 >KF790354,A/Kentucky/01/2013(H3N2))6 neuraminidase (NA) gene ................................A..........................................C....A..G....C................................A............T....G..............................G.......T..................A....................AT..............C.........................................................A..A..C...........................G....................T.................C...... 20 20 , 20 20 285:>KF790354,A/Kentucky/01/2013(H3N2))6 neuraminidase (NA) gene 286 >KF789925,A/Alabama/17/2012(H3N2))6 neuraminidase (NA) gene ................................A..........................................C....A..G....C................................A...R........T....G..............................G.......T..................A....................AT..............C.........................................................A..A..C...........................G....................T.................C...... 21 21 , 21 21 286:>KF789925,A/Alabama/17/2012(H3N2))6 neuraminidase (NA) gene 287 >KF790290,A/Alabama/18/2012(H3N2))6 neuraminidase (NA) gene ................................A..........................................C....A..G....C................................A...R........T....G..............................G.......T..................A....................AT..............C.........................................................A..A..C...........................G....................T.................C...... 21 21 , 21 21 287:>KF790290,A/Alabama/18/2012(H3N2))6 neuraminidase (NA) gene 288 >KF790481,A/West Virginia/05/2013(H3N2))6 neuraminidase (NA) gene ...........................................................................C....A..G....C...............................CA...R........T....G..............................G....C..T..................A....................AT..............C.........................................................A..A..C......................T....G....................T.................C...... 23 23 , 23 23 288:>KF790481,A/West Virginia/05/2013(H3N2))6 neuraminidase (NA) gene 289 >KF789967,A/West Virginia/10/2013(H3N2))6 neuraminidase (NA) gene ...........................................................................C....A..G....C...............................CA...R........T....G..............................G....C..T..................A....................AT..............C.........................................................A..A..C......................T....G....................T.................C...... 23 23 , 23 23 289:>KF789967,A/West Virginia/10/2013(H3N2))6 neuraminidase (NA) gene 290 >KF789861,A/West Virginia/11/2013(H3N2))6 neuraminidase (NA) gene ...........................................................................C....A..G....C...............................CA...R........T....G..............................G....C..T..................A....................AT..............C.........................................................A..A..C......................T....G....................T.................C...... 23 23 , 23 23 290:>KF789861,A/West Virginia/11/2013(H3N2))6 neuraminidase (NA) gene 291 >KF790485,A/West Virginia/06/2013(H3N2))6 neuraminidase (NA) gene ...........................................................................C....A..G....C...............................CA............T....G..............................G....C..T..................A....................AT..............C.........................................................A..A..C......................T....G....................T.................C...... 22 22 , 22 22 291:>KF790485,A/West Virginia/06/2013(H3N2))6 neuraminidase (NA) gene 292 >KF790235,A/New York/38/2012(H3N2))6 neuraminidase (NA) gene ...........................................................................C.......G....C................................A............T....G....................T.........G.......T..................A....................AT..............C.........................................................A..A..C...........................G....................T.................C...... 19 19 , 19 19 292:>KF790235,A/New York/38/2012(H3N2))6 neuraminidase (NA) gene 293 >KF790269,A/New York/38/2012(H3N2))6 neuraminidase (NA) gene ...........................................................................C.......G....C................................A.Y..........T....G....................T.........G.......T..................A....................AT..............C.........................................................A..A..C...........................G....................T.................C...... 20 20 , 20 20 293:>KF790269,A/New York/38/2012(H3N2))6 neuraminidase (NA) gene 294 >KF789943,A/California/49/2012(H3N2))6 neuraminidase (NA) gene ...........................................................................C.......G....C...............................CA.Y.R........T....G..............................G.......T..................A..........A.........AT..............C......C..................................................A..A..C...........................G....................T.................C...... 23 23 , 23 23 294:>KF789943,A/California/49/2012(H3N2))6 neuraminidase (NA) gene 295 >KF790239,A/Hawaii/30/2012(H3N2))6 neuraminidase (NA) gene ...........................................................................C.......G....C........A.......................A...R........T....G..............................G.......T..................A..........A.........AT..............C......C..................................................A..A..C...........................G....................T.................C...... 22 22 , 22 22 295:>KF790239,A/Hawaii/30/2012(H3N2))6 neuraminidase (NA) gene 296 >KF789910,A/Hawaii/45/2012(H3N2))6 neuraminidase (NA) gene ...........................................................................C.......G....C................................A...A........T....G..............................G.......T..................A..........A.........AT..............C......C..................................................A..A..C...........................G....................T.................C...... 21 21 , 21 21 296:>KF789910,A/Hawaii/45/2012(H3N2))6 neuraminidase (NA) gene 297 >KF790179,A/Hawaii/28/2012(H3N2))6 neuraminidase (NA) gene ...........................................................................C.......G....C................................A............T....G..............................G.......T..................A..........A.........AT..............C......C..................................................A..A..C...........................G....................T.................C...... 20 20 , 20 20 297:>KF790179,A/Hawaii/28/2012(H3N2))6 neuraminidase (NA) gene 298 >KF790283,A/Hawaii/29/2012(H3N2))6 neuraminidase (NA) gene ...........................................................................C.......G....C................................A....R.......T....G..Y...........................G.......T..................A..........A.........AT..............C......C..................................................A..A..C...........................G....................T.................C...... 22 22 , 22 22 298:>KF790283,A/Hawaii/29/2012(H3N2))6 neuraminidase (NA) gene 299 >KF790494,A/Pennsylvania/21/2012(H3N2))6 neuraminidase (NA) gene ...........................................................................C.......G..C.C................................A....R.......T....G..............................G.......T......T...........A....................AT..............C........Y................................................A..A..C...........................G............A.......T.................C...... 23 23 , 23 23 299:>KF790494,A/Pennsylvania/21/2012(H3N2))6 neuraminidase (NA) gene 300 >KF789994,A/Hawaii/26/2012(H3N2))6 neuraminidase (NA) gene ...........................................................................C.......G....C................................A....R.......T....G..............................G.......T..................A....................AT..............C.........................................................A..A..C...........................G....................T.................C...... 19 19 , 19 19 300:>KF789994,A/Hawaii/26/2012(H3N2))6 neuraminidase (NA) gene 301 >KF789986,A/Hawaii/25/2012(H3N2))6 neuraminidase (NA) gene ...........................................................................C.......G....C................................A............T....G.........R....................G.......T..................A....................AT..............C.........................................................A..A..C...........................G....................T.................C...... 19 19 , 19 19 301:>KF789986,A/Hawaii/25/2012(H3N2))6 neuraminidase (NA) gene 302 >KF790431,A/Massachusetts/07/2012(H3N2))6 neuraminidase (NA) gene ...........................................................................C.......G....C................................A............T....G..............................G.......T..................A....................AT..............C.........................................................A..A..C...........................G....................T.................C...... 18 18 , 18 18 302:>KF790431,A/Massachusetts/07/2012(H3N2))6 neuraminidase (NA) gene 303 >KF790252,A/New Hampshire/12/2012(H3N2))6 neuraminidase (NA) gene ...........................................................................C.......G....C................................A............T....G..............................G.......T..................A....................AT..............C.........................................................A..A..C...........................G....................T.................C...... 18 18 , 18 18 303:>KF790252,A/New Hampshire/12/2012(H3N2))6 neuraminidase (NA) gene 304 >KF789988,A/Hawaii/26/2012(H3N2))6 neuraminidase (NA) gene ...........................................................................C.......G....C................................A............T....G..............................G.......T..................A....................AT..............C.........................................................A..A..C...........................G....................T.................C...... 18 18 , 18 18 304:>KF789988,A/Hawaii/26/2012(H3N2))6 neuraminidase (NA) gene 305 >KF789873,A/New Hampshire/11/2012(H3N2))6 neuraminidase (NA) gene ...........................................................................C.......G....C................................A............T....G..............................G.......T..................A....................AT..............C.........................................................A..A..C...........................G....................T.................C...... 18 18 , 18 18 305:>KF789873,A/New Hampshire/11/2012(H3N2))6 neuraminidase (NA) gene 306 >KF789930,A/New Hampshire/11/2012(H3N2))6 neuraminidase (NA) gene ...........................................................................C.......G....C................................A...R........T....G..............................G.......T..................A....................AT..............C.........................................................A..A..C...........................G....................T.................C...... 19 19 , 19 19 306:>KF789930,A/New Hampshire/11/2012(H3N2))6 neuraminidase (NA) gene 307 >KF790002,A/Hawaii/25/2012(H3N2))6 neuraminidase (NA) gene ...........................................................................C.......G....C................................A...R........T....G..............................G.......T..................A....................AT..............C.........................................................A..A..C...........................G....................T.................C...... 19 19 , 19 19 307:>KF790002,A/Hawaii/25/2012(H3N2))6 neuraminidase (NA) gene 308 >KF790467,A/New Mexico/03/2013(H3N2))6 neuraminidase (NA) gene ...........................................................................C.......G....C................................A...R........T....G..............................G......CT..................A....................AT..............C.........................................................A..A..C...........................G.............A......T.................C...... 21 21 , 21 21 308:>KF790467,A/New Mexico/03/2013(H3N2))6 neuraminidase (NA) gene 309 >KF790249,A/Texas/82/2012(H3N2))6 neuraminidase (NA) gene ...........................................................................C....A..G....C................................A...R........T....G..............................G.......T..................A....................AT..............C.........................................................A..A..C...........................G....................T.................C...... 20 20 , 20 20 309:>KF790249,A/Texas/82/2012(H3N2))6 neuraminidase (NA) gene 310 >KF790363,A/District Of Columbia/01/2013(H3N2))6 neuraminidase (NA) gene ...........................................................................C....A..G....C................................A...R........T....G..............................G.......T..................A....................AT..............C...........C.............................................A..A..C...........................G....................T..........A......C...... 22 22 , 22 22 310:>KF790363,A/District Of Columbia/01/2013(H3N2))6 neuraminidase (NA) gene 311 >KF790122,A/Alaska/03/2013(H3N2))6 neuraminidase (NA) gene ...........................................................................C....A..G....C................................A...R........T....G...............C..............G.......T..................A...........A........AT..............C.........................................................A..A..C...........................G....................T.................C...... 22 22 , 22 22 311:>KF790122,A/Alaska/03/2013(H3N2))6 neuraminidase (NA) gene 312 >KF789568,A/Massachusetts/06/2013(H3N2))6 neuraminidase (NA) gene ...........................................................................C....A..G....C................................A...R........T....G...............C..............G.......T..................A...........A........AT..............C.........................................................A..A..C...........................G....................TG................C...... 23 23 , 23 23 312:>KF789568,A/Massachusetts/06/2013(H3N2))6 neuraminidase (NA) gene 313 >KF790025,A/Wisconsin/08/2013(H3N2))6 neuraminidase (NA) gene ...........................................................................C....A..G....C.................C..............A...R........T....G..............C...............G.......T..................A.....................T..............C.........................................................A..A..C...........................G....................TG................C...... 22 22 , 22 22 313:>KF790025,A/Wisconsin/08/2013(H3N2))6 neuraminidase (NA) gene 314 >KF790052,A/North Dakota/02/2013(H3N2))6 neuraminidase (NA) gene ...........................................................................C....A..G....C.................C..............A...R........T....G..............................G.....G.T..................A....................AT..............C.........................................................A..A..C...........................G...C................TG................C...... 24 24 , 24 24 314:>KF790052,A/North Dakota/02/2013(H3N2))6 neuraminidase (NA) gene 315 >KF789836,A/California/18/2013(H3N2))6 neuraminidase (NA) gene ...........................................................................C....A..G....C.................C..............A.Y.R........T....G..............................G.....G.T..................A....................AT..............C.........................................................A..A..C...........................G....................T.................C...... 23 23 , 23 23 315:>KF789836,A/California/18/2013(H3N2))6 neuraminidase (NA) gene 316 >KF789823,A/New York/47/2012(H3N2))6 neuraminidase (NA) gene ...........................................................................C....A..G....C.................C..............A...R........T....G..............................G.......T..................A....................AT..............C........................................R................A..A..C...........................G....................T.................C...... 22 22 , 22 22 316:>KF789823,A/New York/47/2012(H3N2))6 neuraminidase (NA) gene 317 >KF789729,A/New Mexico/06/2013(H3N2))6 neuraminidase (NA) gene ...........................................................................C....A..G....C.................C..............A...R........T..A.G..............................G.......T..................A....................AT..............C.........................................................A..A..C...........................G....................T.................C...... 22 22 , 22 22 317:>KF789729,A/New Mexico/06/2013(H3N2))6 neuraminidase (NA) gene 318 >KF789607,A/Wyoming/03/2013(H3N2))6 neuraminidase (NA) gene ...........................................................................C....A..G....C.................C..............A...R........T....G..............................G.......T..................A....................AT..A...........C.......................................................A.A..A..C...........................G....................T.................C...... 23 23 , 23 23 318:>KF789607,A/Wyoming/03/2013(H3N2))6 neuraminidase (NA) gene 319 >KF789863,A/New Jersey/05/2013(H3N2))6 neuraminidase (NA) gene ...............................................................A...........C....A..G....C.................CA.............A...R........T....G..............................G.......T..................A....................AT..............C.........................................................A..A..C...........................G....................T.................C...... 23 23 , 23 23 319:>KF789863,A/New Jersey/05/2013(H3N2))6 neuraminidase (NA) gene 320 >KF790042,A/Florida/09/2013(H3N2))6 neuraminidase (NA) gene .C.........................................................................C....A..G....C.................C..............A...R........T....G.............T................G.......T..................A....................AT....C.........C.........................................................A..A..C...........................G....................T.................C...... 24 24 , 24 24 320:>KF790042,A/Florida/09/2013(H3N2))6 neuraminidase (NA) gene 321 >KF790318,A/Massachusetts/04/2013(H3N2))6 neuraminidase (NA) gene ...........................................................................C....A..G....C..........R......C..............A...R........T...CG..............................G.......T..................A....................AT..............C........................T................................A..A..C...........................G....................T.................C...... 24 24 , 24 24 321:>KF790318,A/Massachusetts/04/2013(H3N2))6 neuraminidase (NA) gene 322 >KF790533,A/Iowa/02/2013(H3N2))6 neuraminidase (NA) gene ...........................................................................C....A..G....C.................C..............A...R........T....G..............................G.......T..................A....................AT.........AA...C.................................................G.......A..A..C...........................G....................T.................C...... 24 24 , 24 24 322:>KF790533,A/Iowa/02/2013(H3N2))6 neuraminidase (NA) gene 323 >KF790410,A/Delaware/08/2013(H3N2))6 neuraminidase (NA) gene ...........................................................................C....A..G....C.................C..............A............T....G..............................G.......T..................A....................AT..............C.........................................................A..A..C...........................G....................T.................C...... 20 20 , 20 20 323:>KF790410,A/Delaware/08/2013(H3N2))6 neuraminidase (NA) gene 324 >KF789897,A/Massachusetts/15/2012(H3N2))6 neuraminidase (NA) gene ...........................................................................C....A..G....C.................C..............A............T....G..............................G.......T..................A..G.................AT..............C.........................................................A..A..C...........................G....................T.................C...... 21 21 , 21 21 324:>KF789897,A/Massachusetts/15/2012(H3N2))6 neuraminidase (NA) gene 325 >KF790317,A/New Jersey/02/2013(H3N2))6 neuraminidase (NA) gene ...........................................................................C....A..G....C.................C..............A............T....G...............C..............G.......T..................A....................AT..............C.........................................................A..A..C...........................G....................T.................C...... 21 21 , 21 21 325:>KF790317,A/New Jersey/02/2013(H3N2))6 neuraminidase (NA) gene 326 >KF789747,A/Texas/09/2013(H3N2))6 neuraminidase (NA) gene .................................................G.........................C....A..G....C.................C..............A............T....G..........................A...G.......T..................A....................AT..............C.........................................................A..A..C...........................G....................T.................C...... 22 22 , 22 22 326:>KF789747,A/Texas/09/2013(H3N2))6 neuraminidase (NA) gene 327 >KF790021,A/Florida/08/2013(H3N2))6 neuraminidase (NA) gene ...........................................................................C....A..G....C.................C..............A............T....G..............................G.......T..................A................C...AT..............C...................................R.....................A..A..C...........................G....................T.................C...... 22 22 , 22 22 327:>KF790021,A/Florida/08/2013(H3N2))6 neuraminidase (NA) gene 328 >KF790422,A/Massachusetts/05/2013(H3N2))6 neuraminidase (NA) gene ...........................................................................C....A..G....C.................C..............A............T....G..............................G.......T..................A....................AT..............C.........................................................A..A..C...........................G....................T.................C...... 20 20 , 20 20 328:>KF790422,A/Massachusetts/05/2013(H3N2))6 neuraminidase (NA) gene 329 >KF790024,A/New York/05/2013(H3N2))6 neuraminidase (NA) gene ..........................................C................................C....A..G....C.................C..............A............T....G..............................G.......T..................A....................AT..............C.........................................................A..A..C...........................G....................T.................C...... 21 21 , 21 21 329:>KF790024,A/New York/05/2013(H3N2))6 neuraminidase (NA) gene 330 >KF790372,A/New York/06/2013(H3N2))6 neuraminidase (NA) gene ...........................................................................C....A..G....C.................C..............A............T....G..............................G.......T..................A.....................T..............C.........................................................A..A..C...........................G....................T.................C...... 19 19 , 19 19 330:>KF790372,A/New York/06/2013(H3N2))6 neuraminidase (NA) gene 331 >KF789536,A/Florida/06/2013(H3N2))6 neuraminidase (NA) gene ...........................................................................C....A..G....C.................C..............A............T....G..............................G.......T..................A....................AT..............C.........................................................A..A..C..........T................G....................T.................C...... 21 21 , 21 21 331:>KF789536,A/Florida/06/2013(H3N2))6 neuraminidase (NA) gene 332 >KC892571,A/Pennsylvania/09/2012(H3N2))6 neuraminidase (NA) gene ..............................................................T..........G.CA...A..G....C................................A............T....G..................A...........G.......T..................A....................AT..............C.........................................................A..A..C..........T................G....................T...C.............C...... 25 25 , 25 25 332:>KC892571,A/Pennsylvania/09/2012(H3N2))6 neuraminidase (NA) gene 333 >KF789694,A/Pennsylvania/09/2012(H3N2))6 neuraminidase (NA) gene ..............................................................T..........G.CA...A..G....C................................A............T....G..................A...........G.......T..................A....................AT..............C.........................................................A..A..C..........T................G....................T...C.............C...... 25 25 , 25 25 333:>KF789694,A/Pennsylvania/09/2012(H3N2))6 neuraminidase (NA) gene 334 >KF790314,A/Delaware/07/2013(H3N2))6 neuraminidase (NA) gene ...............................................GG..........................C....A..G....C......................T.........A............T....G..............................G.......T............G.....A....................AT..............C.........................................................A..A..C...........................G....................T.................C...... 23 23 , 23 23 334:>KF790314,A/Delaware/07/2013(H3N2))6 neuraminidase (NA) gene 335 >KF789931,A/Maryland/29/2012(H3N2))6 neuraminidase (NA) gene ..........................................................................TC....A.......C................................A....R.......T....G..............................G.......T..................A.............T......AT..............C.........................................................A..A..C...........................G....................T...............TAC...... 23 23 , 23 23 335:>KF789931,A/Maryland/29/2012(H3N2))6 neuraminidase (NA) gene 336 >KF789971,A/Florida/21/2013(H3N2))6 neuraminidase (NA) gene ...........................................................................C....A..G...........T.....................T...A....R....T..TT..................................G.......T..................A.....TC..............T...........................C.G..............G...........................A..A..C...........................G..............T.....T.................C...... 26 26 , 26 26 336:>KF789971,A/Florida/21/2013(H3N2))6 neuraminidase (NA) gene 337 >KF790142,A/Texas/14/2013(H3N2))6 neuraminidase (NA) gene ............................G..............................................C....A..G.................................T...A....R....T..TT..................................G.......T..................A.....T...............T...........................C.G....................A.....................A..A..C...........................G..............T.....T.................C...... 25 25 , 25 25 337:>KF790142,A/Texas/14/2013(H3N2))6 neuraminidase (NA) gene 338 >KF789973,A/Massachusetts/12/2013(H3N2))6 neuraminidase (NA) gene ...........................................................................C....A..G.................................T...A....R....T..TT.................T................G.......T..................A.....T...............T........G..................C.G..........................................A..A..C...........................G..............T.....T.................C...... 25 25 , 25 25 338:>KF789973,A/Massachusetts/12/2013(H3N2))6 neuraminidase (NA) gene 339 >KF790380,A/Missouri/05/2013(H3N2))6 neuraminidase (NA) gene ...........................................................................C....A..G.................................T...A...R.....T..TT..................................G.......T..................A..G..T...............T...........................C.G..........................................A..A..C...........................G..............T..C..T.................C...... 25 25 , 25 25 339:>KF790380,A/Missouri/05/2013(H3N2))6 neuraminidase (NA) gene 340 >KF790299,A/Massachusetts/13/2013(H3N2))6 neuraminidase (NA) gene ...........................................................................C....A..G.................................T...A...R.....T..TT..................................G.......T..................A.....T...............T...........................C.G..........................................A..A..C...........................G..............T.....T.................C...... 23 23 , 23 23 340:>KF790299,A/Massachusetts/13/2013(H3N2))6 neuraminidase (NA) gene 341 >Index/H3N2-2011-normalEI/2011(H3N2) ........................................G.......................................A........................................A.......................................A........G.......T..................A.....................T........................A...............................................A..A..C...G.....................A......................T.................C...... 16 16 , 16 16 341:>Index/H3N2-2011-normalEI/2011(H3N2) 342 >Index/2009/Egypt-Iowa+NA,2009// .........................................................................................................................A................................................G................................................T...........................................................................A..C................................................T.................C...... 7 7 , 7 7 342:>Index/2009/Egypt-Iowa+NA,2009// 343 >KF765544,A/Finland/584/2009(H3N2))6 neuraminidase (NA) gene ...............................................................................G.........................................A................................................G...............C................................T..........................................................................................A................................A...T.................C...... 9 9 , 9 9 343:>KF765544,A/Finland/584/2009(H3N2))6 neuraminidase (NA) gene 344 >KF765550,A/Finland/97/2009(H3N2))6 neuraminidase (NA) gene .........................................................................................................................A................................................G...............C................................T..........................................................................................A....................................T.................C...... 7 7 , 7 7 344:>KF765550,A/Finland/97/2009(H3N2))6 neuraminidase (NA) gene 345 >KF765539,A/Finland/636/2009(H3N2))6 neuraminidase (NA) gene .............A.........................................................................G...............................A.A................................................G................................................T.............A.....G.................................................................................................................................... 8 8 , 8 8 345:>KF765539,A/Finland/636/2009(H3N2))6 neuraminidase (NA) gene 346 >KF765546,A/Finland/98/2009(H3N2))6 neuraminidase (NA) gene .......................................................................................G...............................A.A................................................G................................................T.............A.....G.................................................................................................................................... 7 7 , 7 7 346:>KF765546,A/Finland/98/2009(H3N2))6 neuraminidase (NA) gene ---Index------------------------------------------------------------------------TTAAGTTCTAATGCTGTTACTGATCTTCATAGCACTCACGAAATAAGAAATGACGCCCCCAAAGAGAATCCCAACTGAAAGGAACAAATTGTGGTCGGCGGAACTCTGAAGCTCGAACGGTGCCTGATGCTAGACCAGTATTTCGGCGAGATTCTTGGGTATCTCGGGTAATAAGAATCCGCGGACTTCAATTAAAGGTAAAAATTACGGACGTTGACGCCTCATTGCAGCAACAGCCGAGTATTGTTCATGGAAAAAAGCCCAAGCTTTGATCTGAGTGTTAGACTAGGGAGTCGCGAGACAGACCGACCTAGCTATGGACGCGTAAGTTACTTAGAGCGCGGTGAAAAGTAACGGGCCTTTGGATCCCAT -codon-position----------------------------------------------------------------- 11 2 122 2 2 1 1 1 2 1 121 1 1 1 121 1 1 2 21 2 1 2 1 1 1 1 2 121 1 2 1 1 1 2 1 122 1 1 1 2212 12 1 1 1 1 1 1 2 121 1 12 1 1 1 2 11 1 122 1 1 2 1 2 1 1 12 12 1 1 2212 2 1121 112 1 1 2 1 2 2 2 2 12 2 2 1122 1 2 11 1 1 2 1 1 1 2 1 11 1 1212 000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111 000000000000000000000000001111111111111111111111111122222222222222222222222222222222222233333333333333333333333344444444444444444444444444444555555555555555555566666666666666666666666666666777777777777777777777777788888888888888888888899999999999999999999999999990000000000000000000000000000000011111111111111111111111111111122222222222222222222222222333333333333333334444 011223345555667777888889990111122223345566677777788900000111112222233333344445566777788800011222333445677777888900012222334445555566667778889000011112444557888900111223334456666666777889999000111223344445556678888900122344445556667889900002233333334444566888999990000011112222233334445567788999900000111122344555666677888899900001223333444466777778999000013344556889990000 626578951789261278245783563178916790574658902457805202467036791235912457901245647038935803625147169686925689034926870679891361236934891246798145703692369259589139235790363780134569258140369058124032814572360370367229858706790271480781803671404567892359109136123560346812560367905781470921806257801467036918712578014845125827934798150369057803256891016245810547379360582356
segment 7:
Code:000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000 000000000001111111111111111112222222222222222333333333333333344444444444444444444555555555555555566666666666666667777777777777777777888888888888888888888899999999999 334444568990012455666778888890144455666779999000112233555899900112234556777888899012224444556789900000112233457781223455666667788899022334444445556677888911234555677 690358197392812409378570356957606958147361357369254803124108928140681698147037926141580136254321403469281502222851035468023675801203839890346780593714256829530026749 -codon-position--------------------------------------------- 11 2 12 1 2 21 1 1 2 1 1 12 1 1 1 2 1 1 21 11211 121111112 1 121 12 11 11 11 1212121 ---Index----------------------------------------------------CTAGTAAGACTGCACAAACCTATGGTTGGCACTCTGTATTCTACGGATGGGCTGCATCCATGGTATGGAGGCCGCGTAGAGATGTGTTGCTATAAGGGGGCGGTTGGAGGTTCGTGGGGGCCGTGCGATAGCGTTCGTATGACCACCAACCAAGAAAAGGCCCTG 1 >Index/USA-2007 ..................................................................................................................................................................... 0 0 , 0 0 1:>Index/USA-2007 2 >Index/Perth-like/2009 ......................................C........................................G...A...........A................T.................................................... 5 5 , 5 5 2:>Index/Perth-like/2009 3 >Index/Brisbane-like/2007 ..................................................................................................................................................................... 0 0 , 0 0 3:>Index/Brisbane-like/2007 4 >2007/02/06,14278,AUS,A/Brisbane/10/07 ........................................................C.............................C.............................................................................. 2 2 , 2 2 4:>2007/02/06,14278,AUS,A/Brisbane/10/07 5 >Index/2009/Egypt/Iowa ......................................C........................................G...A................................................................................. 3 3 , 3 3 5:>Index/2009/Egypt/Iowa 6 >Index/H3N2-2011-normalEI/2011(H3N2) ......................................C..........................C.............G...A.......T..G..............................................................G....... 7 7 , 7 7 6:>Index/H3N2-2011-normalEI/2011(H3N2) 7 >Index/2009/Egypt-Iowa+NA,2009// ......................................C........................................G...A................................................................................. 3 3 , 3 3 7:>Index/2009/Egypt-Iowa+NA,2009// 8 >Index/32g12f1.c2,42-53 ......................................C..C.........................A...........G...A.........................A..........................A............................ 7 7 , 7 7 8:>Index/32g12f1.c2,42-53 9 >KF790507,A/Texas/83/2012(H3N2) ......................................C..C.........................A...........G...A.........................A..........................A............................ 7 7 , 7 7 9:>KF790507,A/Texas/83/2012(H3N2) 10 >KF790172,A/Louisiana/09/2012(H3N2) ......................................C..C.........................A...........G...A................................................................................. 5 5 , 5 5 10:>KF790172,A/Louisiana/09/2012(H3N2) 11 >KF790254,A/Maine/08/2012(H3N2) ................................CT....C..C.........................A...........G...A.............A...................................C.........................A..... 10 10 , 10 10 11:>KF790254,A/Maine/08/2012(H3N2) 12 >Index/32g12f1.c2,38-41 ......................................C..C.........................A...........G...A..................A....................A......................................... 7 7 , 7 7 12:>Index/32g12f1.c2,38-41 13 >KF790174,A/Maryland/32/2012(H3N2) ......................................C..C.........................A...........G...A.....T........................................................................... 6 6 , 6 6 13:>KF790174,A/Maryland/32/2012(H3N2) 14 >KF789708,A/Kentucky/18/2012(H3N2) .......A.....................A........C.T........A.............................G..CA.....A..............................T..........T................................. 11 11 , 11 11 14:>KF789708,A/Kentucky/18/2012(H3N2) 15 >KF789710,A/Kentucky/17/2012(H3N2) .......A.....................A........C.T........A.............................G...A.....A..............................T..........T................................. 10 10 , 10 10 15:>KF789710,A/Kentucky/17/2012(H3N2) 16 >KF790486,A/South Carolina/22/2012(H3N2) .......A.....................A........C.T........A.............................G...A.....A..............................T..........T................................. 10 10 , 10 10 16:>KF790486,A/South Carolina/22/2012(H3N2) 17 >KF789907,A/Kentucky/24/2012(H3N2) .......A.....................A........C.T........A.............................G...A.....A..............................T..........T................................. 10 10 , 10 10 17:>KF789907,A/Kentucky/24/2012(H3N2) 18 >KF789939,A/South Carolina/24/2012(H3N2) .......A.....................A........C.T........A.............................G...A.....A..............................T..........T................................. 10 10 , 10 10 18:>KF789939,A/South Carolina/24/2012(H3N2) 19 >KF790428,A/Tennessee/10/2012(H3N2) .......A.....................A........C.T........A.............................G...A.....A..............................T..........T................................. 10 10 , 10 10 19:>KF790428,A/Tennessee/10/2012(H3N2) 20 >KF789932,A/South Carolina/24/2012(H3N2) .......A.....................A........C.T........A.............................G...A.....A..............................T..........T................................. 10 10 , 10 10 20:>KF789932,A/South Carolina/24/2012(H3N2) 21 >KF789802,A/Virginia/16/2012(H3N2) .......A.....................A........C.T........A.............................G...A.....A..........................A...T..........T................................. 11 11 , 11 11 21:>KF789802,A/Virginia/16/2012(H3N2) 22 >KF789675,A/Virginia/15/2012(H3N2) .......A.....................A........C.T........A.............................G...A.....A..........................A...T..........T................................. 11 11 , 11 11 22:>KF789675,A/Virginia/15/2012(H3N2) 23 >KF789803,A/Virginia/16/2012(H3N2) .......A.....................A........C.T........A.............................G...A.....A..........................A...T..........T................................. 11 11 , 11 11 23:>KF789803,A/Virginia/16/2012(H3N2) 24 >KF789757,A/Michigan/33/2012(H3N2) .......A.....................A........C.T........A.............................G...A.....A..........................A...T..........T................................. 11 11 , 11 11 24:>KF789757,A/Michigan/33/2012(H3N2) 25 >KF789713,A/Tennessee/18/2012(H3N2) .......A.....................A........C.T........A.............................G...A.....A..........................A...T..........T................................. 11 11 , 11 11 25:>KF789713,A/Tennessee/18/2012(H3N2) 26 >KF789940,A/Florida/68/2012(H3N2) .............................A........C.T........A.............................G...A.....A..............................T............................................ 8 8 , 8 8 26:>KF789940,A/Florida/68/2012(H3N2) 27 >KF790424,A/Alaska/02/2013(H3N2) .............................A........C.T........A.....................T.......G...A.....A.............................................TA........T................... 11 11 , 11 11 27:>KF790424,A/Alaska/02/2013(H3N2) 28 >KF789808,A/Georgia/22/2012(H3N2) .............................A........C.T........A.....................T.......G...A.....A.............................................TA........T................... 11 11 , 11 11 28:>KF789808,A/Georgia/22/2012(H3N2) 29 >KF789903,A/Alaska/02/2013(H3N2) .............................A........C.T........A.....................T.......G...A.....A.............................................TA........T................... 11 11 , 11 11 29:>KF789903,A/Alaska/02/2013(H3N2) 30 >KF789937,A/Florida/01/2013(H3N2) .............................A........C.T........A.....................T.......G...A.....A.............................................TA........T................... 11 11 , 11 11 30:>KF789937,A/Florida/01/2013(H3N2) 31 >KF789553,A/California/55/2012(H3N2) .............................A........C.T........A.....................T.......G...A.....A.............................................TA........T................... 11 11 , 11 11 31:>KF789553,A/California/55/2012(H3N2) 32 >KF790246,A/South Carolina/16/2012(H3N2) .............................A........C.T........A.....................T.......G...A.....A......................................C......TA........T................... 12 12 , 12 12 32:>KF790246,A/South Carolina/16/2012(H3N2) 33 >KF790078,A/Delaware/23/2012(H3N2) .........A...................A........C.T........A.....................T.......G...A.....A..............................................A........T................... 11 11 , 11 11 33:>KF790078,A/Delaware/23/2012(H3N2) 34 >KF790072,A/Delaware/23/2012(H3N2) .........A...................A........C.T........A.....................T.......G...A.....A..............................................A........T................... 11 11 , 11 11 34:>KF790072,A/Delaware/23/2012(H3N2) 35 >KF790274,A/Mississippi/13/2012(H3N2) .............................A........C.T........A.....................T.......G...A.....A..............................................A........T................... 10 10 , 10 10 35:>KF790274,A/Mississippi/13/2012(H3N2) 36 >KF790191,A/Vermont/16/2012(H3N2) .............................A........C.T........A.....................T.......G...A.....A..............................................A........T................... 10 10 , 10 10 36:>KF790191,A/Vermont/16/2012(H3N2) 37 >KF790241,A/New York/40/2012(H3N2) .............................A........C.T........A.....................T.......G...A.....A.......A.................A....................A........T................... 12 12 , 12 12 37:>KF790241,A/New York/40/2012(H3N2) 38 >KF790233,A/Nevada/26/2012(H3N2) .............................A........C.T........A.....................T.......G...A.....A.......A......................................A........T................... 11 11 , 11 11 38:>KF790233,A/Nevada/26/2012(H3N2) 39 >KF789860,A/Maryland/43/2012(H3N2) .............................A........C.T........A.....................T.......G...A.....A.......A......................................A........T................... 11 11 , 11 11 39:>KF789860,A/Maryland/43/2012(H3N2) 40 >KF789749,A/Louisiana/16/2012(H3N2) .............................A........C.T........A.....................T.......G...A.....A.......A......................................A........T................... 11 11 , 11 11 40:>KF789749,A/Louisiana/16/2012(H3N2) 41 >KF789919,A/Alabama/35/2012(H3N2) .............................A........C.T........A.....................T.......G...A.....A.......A......................................A........T................... 11 11 , 11 11 41:>KF789919,A/Alabama/35/2012(H3N2) 42 >KF790000,A/Florida/39/2012(H3N2) .............................A........C.T........A.....................T.......G...A.....A.......A...A..................................A........T................... 12 12 , 12 12 42:>KF790000,A/Florida/39/2012(H3N2) 43 >KF789833,A/Virginia/14/2012(H3N2) .............................A........C.T........A.....................T.......GA..A.....A.......A......................................A........T................... 12 12 , 12 12 43:>KF789833,A/Virginia/14/2012(H3N2) 44 >KF790096,A/Wisconsin/37/2012(H3N2) ......................C......A........C.T........A.....................T.......G...A.....A..............................................A........T................... 11 11 , 11 11 44:>KF790096,A/Wisconsin/37/2012(H3N2) 45 >KF790110,A/Mississippi/12/2012(H3N2) ......................C......A........C.T........A.....................T.......G...A.....A.........S....................................A........T...............A... 13 13 , 13 13 45:>KF790110,A/Mississippi/12/2012(H3N2) 46 >KF790396,A/Nebraska/04/2013(H3N2) ......................C......A....C...C.T........A.....................T.......G...A.....A...............A..............................A........T................... 13 13 , 13 13 46:>KF790396,A/Nebraska/04/2013(H3N2) 47 >Index/32g12f1.c2,55-62 .............................A....C...C.T........AA....................T.......G...A.....A..............................................A........T................... 12 12 , 12 12 47:>Index/32g12f1.c2,55-62 48 >KF789573,A/Colorado/20/2012(H3N2) .............................A........C.T........AA....................T.......G...A.....A..............................................A........T....T.............. 12 12 , 12 12 48:>KF789573,A/Colorado/20/2012(H3N2) 49 >KF789692,A/Georgia/15/2012(H3N2) .............................A........C.T........A.....................T.....C.G...A.....A..............................................A........T................... 11 11 , 11 11 49:>KF789692,A/Georgia/15/2012(H3N2) 50 >KF789922,A/Georgia/16/2012(H3N2) .............................A........C.T........A.....................T.....C.G...A.....A..............................................A........T........G.......... 12 12 , 12 12 50:>KF789922,A/Georgia/16/2012(H3N2) 51 >Index/H3N3-2011-reassortedEI/2011(H3N2) .............................A........C.T........A.............................G...A.....A........................................................................... 7 7 , 7 7 51:>Index/H3N3-2011-reassortedEI/2011(H3N2) 52 >KF790164,A/Oklahoma/04/2012(H3N2) .........T......T..T.....G...A........C.T........A.....G.......................G...A.....A...................T.............................C....................A.T.. 16 16 , 16 16 52:>KF790164,A/Oklahoma/04/2012(H3N2) 53 >KF790492,A/Louisiana/11/2012(H3N2) ..........G..................A........C.T........A....................A.T......G...A.....A................A...................T.......C.............G................ 14 14 , 14 14 53:>KF790492,A/Louisiana/11/2012(H3N2) 54 >KF790474,A/California/22/2013(H3N2) ..................T....A...T..........C.............C...............G..T....C..G...A.............A........A................................................G......... 13 13 , 13 13 54:>KF790474,A/California/22/2013(H3N2) 55 >KF789755,A/Michigan/32/2012(H3N2) ..................T....A...T..........C.............C...............G..T.......G...A......................................................G.......................... 10 10 , 10 10 55:>KF789755,A/Michigan/32/2012(H3N2) 56 >KF789864,A/Minnesota/05/2013(H3N2) ..................T....A...T..........C.............C...............G..T.......G...A.............................A................................................... 10 10 , 10 10 56:>KF789864,A/Minnesota/05/2013(H3N2) 57 >KF790046,A/Georgia/03/2013(H3N2) ....C.............T....A...T..........C.............C...............G..T.......G...A..............A.................................................................. 11 11 , 11 11 57:>KF790046,A/Georgia/03/2013(H3N2) 58 >KF790140,A/Georgia/03/2013(H3N2) ....C.............T....A...T..........C.............C...............G..T.......G...A..............A.................................................................. 11 11 , 11 11 58:>KF790140,A/Georgia/03/2013(H3N2) 59 >KF789882,A/Maine/11/2012(H3N2) ..................T....A...T..........C.............C...............G..T.......G...A....................C........................................T................... 11 11 , 11 11 59:>KF789882,A/Maine/11/2012(H3N2) 60 >KF789793,A/Illinois/15/2012(H3N2) ..................T....A...T..........C.............C...............G..T.......G...A..........................................................T...................... 10 10 , 10 10 60:>KF789793,A/Illinois/15/2012(H3N2) 61 >KF789723,A/Minnesota/03/2013(H3N2) ..................T....A...T..........C.............C...............G..T.......G...A..........................................................T...................... 10 10 , 10 10 61:>KF789723,A/Minnesota/03/2013(H3N2) 62 >KF790508,A/Ohio/92/2012(H3N2) ..................T....A...T..........C.............C...............G..T.......G...A................................................................................. 9 9 , 9 9 62:>KF790508,A/Ohio/92/2012(H3N2) 63 >KF790035,A/Nevada/05/2013(H3N2) ..................T....A...T..........C.............C...............G..T.......G...A................................................................................. 9 9 , 9 9 63:>KF790035,A/Nevada/05/2013(H3N2) 64 >KF790349,A/Mississippi/02/2013(H3N2) ..................T....A...T..........C.............C...............G..T.......G...A................................................................................. 9 9 , 9 9 64:>KF790349,A/Mississippi/02/2013(H3N2) 65 >KF790475,A/Louisiana/01/2013(H3N2) ..................T....A...T..........C.............C...............G..T.......G...A................................................................................. 9 9 , 9 9 65:>KF790475,A/Louisiana/01/2013(H3N2) 66 >KF790401,A/Alaska/04/2013(H3N2) ..................T....A...T..........C.............C...............G..T.......G...A................................................................................. 9 9 , 9 9 66:>KF790401,A/Alaska/04/2013(H3N2) 67 >KF789639,A/Vermont/02/2013(H3N2) ..................T....A...T..........C.............C...............G..T.......G...A................................................................................. 9 9 , 9 9 67:>KF789639,A/Vermont/02/2013(H3N2) 68 >KF790520,A/California/12/2013(H3N2) ..................T....A...T..........C.............C...............G..T.......G...A................................................................................. 9 9 , 9 9 68:>KF790520,A/California/12/2013(H3N2) 69 >KF789727,A/Colorado/21/2012(H3N2) ..................T....A...T..........C.............C...............G..T.......G...A................................................................................. 9 9 , 9 9 69:>KF789727,A/Colorado/21/2012(H3N2) 70 >KF790188,A/Wisconsin/38/2012(H3N2) ..................T....A...T..........C.............C...............G..T.......G...A................................................................................. 9 9 , 9 9 70:>KF790188,A/Wisconsin/38/2012(H3N2) 71 >KF789641,A/Louisiana/02/2013(H3N2) ..................T....A...T..........C.............C...............G..T.......G...A................................................................................. 9 9 , 9 9 71:>KF789641,A/Louisiana/02/2013(H3N2) 72 >KF790510,A/Kansas/11/2012(H3N2) ..................T....A...T..........C.............C...............G..T.......G...A................................................................................. 9 9 , 9 9 72:>KF790510,A/Kansas/11/2012(H3N2) 73 >KF790029,A/New Mexico/09/2013(H3N2) ..................T....A...T..........C.............C...............G..T.......G...A................................................................................. 9 9 , 9 9 73:>KF790029,A/New Mexico/09/2013(H3N2) 74 >KF789960,A/Illinois/01/2013(H3N2) ..................T....A...T..........C.............C...............G..T.......G...A................................................................................. 9 9 , 9 9 74:>KF789960,A/Illinois/01/2013(H3N2) 75 >KF790470,A/New Mexico/04/2013(H3N2) ..................T....A...T..........C.............C..................T.......G...A................................................................................. 8 8 , 8 8 75:>KF790470,A/New Mexico/04/2013(H3N2) 76 >KF789658,A/Oregon/01/2013(H3N2) ..................T....A...T..........C.............C..................T.......G...A................................................................................. 8 8 , 8 8 76:>KF789658,A/Oregon/01/2013(H3N2) 77 >KF790040,A/Kansas/01/2013(H3N2) ..................T....A...T..........C.............C..................T.......G...A................................................................................. 8 8 , 8 8 77:>KF790040,A/Kansas/01/2013(H3N2) 78 >KF790303,A/Pennsylvania/02/2013(H3N2) ..................T....A...T..........C.............C..................T.......G...A................................................................................. 8 8 , 8 8 78:>KF790303,A/Pennsylvania/02/2013(H3N2) 79 >KF790030,A/Michigan/03/2013(H3N2) ..................T....A...T..........C.............C..................T.......G...A................................................................................. 8 8 , 8 8 79:>KF790030,A/Michigan/03/2013(H3N2) 80 >KF790342,A/Mississippi/01/2013(H3N2) ..................T....A...T..........C.............C..................T.......G...A................................................................................. 8 8 , 8 8 80:>KF790342,A/Mississippi/01/2013(H3N2) 81 >KF789654,A/Oregon/01/2013(H3N2) ..................T....A...T..........C.............C..................T.......G...A................................................................................. 8 8 , 8 8 81:>KF789654,A/Oregon/01/2013(H3N2) 82 >KF789737,A/Tennessee/02/2013(H3N2) ..................T....A...T..........C.............C..................T.......G...A.........................................A....................................... 9 9 , 9 9 82:>KF789737,A/Tennessee/02/2013(H3N2) 83 >KF789537,A/California/14/2013(H3N2) ..................T....A...T.........TC.............C..................T.......G...A................................................................................. 9 9 , 9 9 83:>KF789537,A/California/14/2013(H3N2) 84 >KF789687,A/Missouri/13/2012(H3N2) ..................T....A...T..........C.............C..................T.......G...A............A..............................G..................................... 10 10 , 10 10 84:>KF789687,A/Missouri/13/2012(H3N2) 85 >KF790397,A/Wisconsin/05/2013(H3N2) ..................T....A...T..........C.............C..................T.......G...A............A.................................................................... 9 9 , 9 9 85:>KF790397,A/Wisconsin/05/2013(H3N2) 86 >KF790447,A/Wisconsin/41/2012(H3N2) ..................T....A...T..........C.............C..................T.......G...A............A.................................................................... 9 9 , 9 9 86:>KF790447,A/Wisconsin/41/2012(H3N2) 87 >KF790294,A/North Dakota/05/2012(H3N2) ..................T....A...T..........C.............C..................T.......G...A........................T........................................................ 9 9 , 9 9 87:>KF790294,A/North Dakota/05/2012(H3N2) 88 >KF789634,A/Kansas/02/2013(H3N2) ..................T....A...T..........C...G.........C...............G..T.......G...A................................................................................. 10 10 , 10 10 88:>KF789634,A/Kansas/02/2013(H3N2) 89 >KF789666,A/Kansas/04/2013(H3N2) ..................T....A...T..........C.............C...............G..T.......G...A.............................................G................................... 10 10 , 10 10 89:>KF789666,A/Kansas/04/2013(H3N2) 90 >KF790305,A/District Of Columbia/01/2012(H3N2) ..................T....A..CT..........C.............C...............G..T...A...G...A................................................................................. 11 11 , 11 11 90:>KF790305,A/District Of Columbia/01/2012(H3N2) 91 >KF790083,A/Colorado/01/2013(H3N2) ..................T....A..CT..........C.............C...............G..T...A...G...A................................................................................. 11 11 , 11 11 91:>KF790083,A/Colorado/01/2013(H3N2) 92 >KF790466,A/California/10/2013(H3N2) ..................T....A..CT..........C.............C...............G..T...A...G...A................................................................................. 11 11 , 11 11 92:>KF790466,A/California/10/2013(H3N2) 93 >KF789783,A/Nevada/28/2012(H3N2) ..................T....A..CT..........C.............C...............G..T.......G...A................................................................................. 10 10 , 10 10 93:>KF789783,A/Nevada/28/2012(H3N2) 94 >KF789612,A/Connecticut/01/2013(H3N2) ..................T....A...T...T......C.............C...............G..T.......G...A........................................................A........................ 11 11 , 11 11 94:>KF789612,A/Connecticut/01/2013(H3N2) 95 >KF789745,A/North Carolina/05/2013(H3N2) ......C................A...T...T......C.............C...............G..T.......G...A..............................C..................................T............... 12 12 , 12 12 95:>KF789745,A/North Carolina/05/2013(H3N2) 96 >KF790134,A/New York/03/2013(H3N2) .......................A...T...T......C.............C...............G..T.......G...A..............................C................................................C. 11 11 , 11 11 96:>KF790134,A/New York/03/2013(H3N2) 97 >KF790522,A/California/11/2013(H3N2) .......................A...T...T......C.............C...............G..T.......G...A..............................C........................C......................... 11 11 , 11 11 97:>KF790522,A/California/11/2013(H3N2) 98 >KF789756,A/Ohio/102/2012(H3N2) .......................A...TA..T......C.............C...............G..T.......G...A..............................C.................................................. 11 11 , 11 11 98:>KF789756,A/Ohio/102/2012(H3N2) 99 >KF790296,A/South Dakota/16/2012(H3N2) .......................A...T...T......C.............C...............G..T.......G...A..............................C.................................................. 10 10 , 10 10 99:>KF790296,A/South Dakota/16/2012(H3N2) 100 >KF790526,A/Idaho/02/2013(H3N2) .......................A...T...T......C.............C...............G..T.......G...A..............................C.................................................. 10 10 , 10 10 100:>KF790526,A/Idaho/02/2013(H3N2) 101 >KF789832,A/Nebraska/11/2012(H3N2) .......................A...T...T......C.............C...............G..T.......G...A..............................C.................................................. 10 10 , 10 10 101:>KF789832,A/Nebraska/11/2012(H3N2) 102 >KF789790,A/South Dakota/14/2012(H3N2) .......................A...T...T......C.............C...............G..T.......G...A..............................C.................................................. 10 10 , 10 10 102:>KF789790,A/South Dakota/14/2012(H3N2) 103 >KF789715,A/Ohio/97/2012(H3N2) .......................A...T...T......C.............C...............G..T.......G...A..............................C.................................................. 10 10 , 10 10 103:>KF789715,A/Ohio/97/2012(H3N2) 104 >KF790525,A/Idaho/01/2013(H3N2) .......................A...T...T......C.............C...............G..T.......G...A..............................C.................................................. 10 10 , 10 10 104:>KF790525,A/Idaho/01/2013(H3N2) 105 >KF789681,A/South Dakota/10/2012(H3N2) .......................A...T...T......C.............C...............G..T.......G...A..............................C.................................................. 10 10 , 10 10 105:>KF789681,A/South Dakota/10/2012(H3N2) 106 >KF789788,A/South Dakota/12/2012(H3N2) .......................A...T...T......C.............C...............G..T.......G...A..............................C.................................................. 10 10 , 10 10 106:>KF789788,A/South Dakota/12/2012(H3N2) 107 >KF789830,A/Washington/62/2012(H3N2) .......................A...T...T......C.............C...............G..T.......G...A..............................C.................................................. 10 10 , 10 10 107:>KF789830,A/Washington/62/2012(H3N2) 108 >KF790126,A/Missouri/04/2013(H3N2) .......................A...T...T......C.............C...............G..T.......G...A..............................C.................................................. 10 10 , 10 10 108:>KF790126,A/Missouri/04/2013(H3N2) 109 >KF790210,A/South Dakota/15/2012(H3N2) .......................A...T...T......C.............C...............G..T.......G...A..............................C.................................................. 10 10 , 10 10 109:>KF790210,A/South Dakota/15/2012(H3N2) 110 >KF790300,A/New Mexico/23/2012(H3N2) .......................A...T...T......C.............C...............G..T.......G...A..............................C.................................................. 10 10 , 10 10 110:>KF790300,A/New Mexico/23/2012(H3N2) 111 >KF790099,A/Iowa/13/2012(H3N2) .......................A...T...T......C.............C...............G..T.......G...A..............................C.................................................. 10 10 , 10 10 111:>KF790099,A/Iowa/13/2012(H3N2) 112 >KF789938,A/California/46/2012(H3N2) .......................A...T...T......C.............C...............G..T.......G...A..............................C.................................................. 10 10 , 10 10 112:>KF789938,A/California/46/2012(H3N2) 113 >KF790463,A/Nevada/02/2013(H3N2) .......................A...T...T......C.............C...............G..T.......G...A..............................C.................................................. 10 10 , 10 10 113:>KF790463,A/Nevada/02/2013(H3N2) 114 >KF789726,A/Missouri/04/2013(H3N2) .......................A...T...T......C.............C...............G..T.......G...A..............................C.................................................. 10 10 , 10 10 114:>KF789726,A/Missouri/04/2013(H3N2) 115 >KF789555,A/California/13/2013(H3N2) .......................A...T...T......C.............C...............G..T.......G...A..............................C.................................................. 10 10 , 10 10 115:>KF789555,A/California/13/2013(H3N2) 116 >KF789602,A/West Virginia/20/2012(H3N2) .......................A...T...T......C.............C...............G..T.......G...A..............................C.................................................. 10 10 , 10 10 116:>KF789602,A/West Virginia/20/2012(H3N2) 117 >KF789742,A/South Dakota/01/2013(H3N2) .......................A...T...T......C.............C...............G..T.......G...A..............................C.................................................. 10 10 , 10 10 117:>KF789742,A/South Dakota/01/2013(H3N2) 118 >KF789806,A/South Dakota/12/2012(H3N2) .......................A...T...T......C.............C...............G..T.......G...A..............................C.................................................. 10 10 , 10 10 118:>KF789806,A/South Dakota/12/2012(H3N2) 119 >KF789942,A/North Dakota/08/2012(H3N2) .......................A...T...T......C.............C...............G..T.......G...A..............................C.................................................. 10 10 , 10 10 119:>KF789942,A/North Dakota/08/2012(H3N2) 120 >KF790175,A/Michigan/25/2012(H3N2) .......................A...T...T......C.............C...............G..T.......G...A..............................C.................................................. 10 10 , 10 10 120:>KF790175,A/Michigan/25/2012(H3N2) 121 >KF789955,A/Ohio/01/2013(H3N2) .......................A...T...T......C.............C...............G..T.......G...A..............................C.............................G.................... 11 11 , 11 11 121:>KF789955,A/Ohio/01/2013(H3N2) 122 >KF790376,A/Ohio/01/2013(H3N2) .......................A...T...T......C.............C...............G..T.......G...A..............................C.............................G.................... 11 11 , 11 11 122:>KF790376,A/Ohio/01/2013(H3N2) 123 >KF790443,A/Wyoming/20/2012(H3N2) .......................A...T...T......C.............C...............G..T.......G...A..............................C...............................A.................. 11 11 , 11 11 123:>KF790443,A/Wyoming/20/2012(H3N2) 124 >KF789730,A/Vermont/19/2012(H3N2) ....................C..A...T...T......C.............C...............G..T.......G...A..............................C.................................................. 11 11 , 11 11 124:>KF789730,A/Vermont/19/2012(H3N2) 125 >KF789636,A/Nebraska/06/2013(H3N2) .......................A...T...T......C.............................G..T.......G...A......C.......................................................................... 9 9 , 9 9 125:>KF789636,A/Nebraska/06/2013(H3N2) 126 >KF790304,A/Nebraska/15/2012(H3N2) .......................A...T..........C..C..........................G..T.......G...A......C...................................................................A...... 10 10 , 10 10 126:>KF790304,A/Nebraska/15/2012(H3N2) 127 >KF789647,A/Nebraska/03/2013(H3N2) .......................A...T..........C..C..........................G..T.......G...A..........................................................................A...... 9 9 , 9 9 127:>KF789647,A/Nebraska/03/2013(H3N2) 128 >KF790251,A/Iowa/14/2012(H3N2) .......................A...T..........C.............................G..T.......G...A..........................................................................A...... 8 8 , 8 8 128:>KF790251,A/Iowa/14/2012(H3N2) 129 >KF789577,A/Florida/46/2012(H3N2) .......................A...T..........C.............................G..T.......G...A..........................................................................A...... 8 8 , 8 8 129:>KF789577,A/Florida/46/2012(H3N2) 130 >KF789892,A/New Hampshire/21/2012(H3N2) .......................A...T..........C.............................G..T.......G...A..........................................................................A...... 8 8 , 8 8 130:>KF789892,A/New Hampshire/21/2012(H3N2) 131 >KF790217,A/Iowa/15/2012(H3N2) .......................A...T..........C.............................G..T.......G...A..........................................................................A...... 8 8 , 8 8 131:>KF790217,A/Iowa/15/2012(H3N2) 132 >KF789890,A/Wisconsin/51/2012(H3N2) .......................A...T..........C.............................G..T.......G...A..........................................................................A...... 8 8 , 8 8 132:>KF789890,A/Wisconsin/51/2012(H3N2) 133 >KF789807,A/Iowa/22/2012(H3N2) .......................A...T..........C..............A..............G..T.......G...A..........................................................................A...... 9 9 , 9 9 133:>KF789807,A/Iowa/22/2012(H3N2) 134 >KF790279,A/Texas/82/2012(H3N2) ...A...................A...T..........C.............................G..T.......G...A..........................................................................A...... 9 9 , 9 9 134:>KF790279,A/Texas/82/2012(H3N2) 135 >KF790465,A/Iowa/01/2013(H3N2) .......................A...T..........C....T........................G..T.......G...A..........................................................................A...... 9 9 , 9 9 135:>KF790465,A/Iowa/01/2013(H3N2) 136 >KF790263,A/Oklahoma/05/2012(H3N2) .......................A...T..........C....T........................G..T.......G...A................................................................................. 8 8 , 8 8 136:>KF790263,A/Oklahoma/05/2012(H3N2) 137 >KF789754,A/Kansas/14/2012(H3N2) .......................A...T..........C.............................G..T.......G...A...........................................................T..................... 8 8 , 8 8 137:>KF789754,A/Kansas/14/2012(H3N2) 138 >KF789893,A/Massachusetts/15/2012(H3N2) .......................A...T..........C.............................G..T.......G...A...............................R................................................. 8 8 , 8 8 138:>KF789893,A/Massachusetts/15/2012(H3N2) 139 >KF790080,A/Vermont/28/2012(H3N2) ..............Y........A...T..........C.............................G..T.......G...A................................................................................. 8 8 , 8 8 139:>KF790080,A/Vermont/28/2012(H3N2) 140 >KF789572,A/Utah/02/2013(H3N2) .......................A...T..........C.............................G..T.......G...A..............................................................T.................. 8 8 , 8 8 140:>KF789572,A/Utah/02/2013(H3N2) 141 >KF789815,A/Washington/61/2012(H3N2) .......................A...T..........C........................A....G..T.......G...A................................................................................. 8 8 , 8 8 141:>KF789815,A/Washington/61/2012(H3N2) 142 >KF789574,A/North Carolina/24/2012(H3N2) .......................A...T..........C.............C...............G..T.......G...A................................................................................. 8 8 , 8 8 142:>KF789574,A/North Carolina/24/2012(H3N2) 143 >KF789594,A/Indiana/164/2012(H3N2) ............T..........A...T..........C.............C...............G..........G...A..............................................A................G................. 10 10 , 10 10 143:>KF789594,A/Indiana/164/2012(H3N2) 144 >KF790260,A/Indiana/162/2012(H3N2) .......................A...T..........C.............C...............G..........G...A..............................................A................G................. 9 9 , 9 9 144:>KF790260,A/Indiana/162/2012(H3N2) 145 >KF790111,A/Colorado/18/2012(H3N2) .......................A...T..........C.............C...............G..T.......G...A.............................A................A.................................. 10 10 , 10 10 145:>KF790111,A/Colorado/18/2012(H3N2) 146 >KF790200,A/Colorado/18/2012(H3N2) .......................A...T..........C.............C...............G..T.......G...A.............................A................A.................................. 10 10 , 10 10 146:>KF790200,A/Colorado/18/2012(H3N2) 147 >KF789653,A/Alabama/07/2013(H3N2) .......................A...T..........C.............C...............G..T.......G...A..................................A...........A.................................. 10 10 , 10 10 147:>KF789653,A/Alabama/07/2013(H3N2) 148 >KF789551,A/Nevada/04/2013(H3N2) .......................A...T..........C.............C...............G..T.......G...A.........................................A....A.................................. 10 10 , 10 10 148:>KF789551,A/Nevada/04/2013(H3N2) 149 >KF790395,A/Massachusetts/05/2013(H3N2) .......................A...T..........C.............................G..T.......G...A..............................................A.................................. 8 8 , 8 8 149:>KF790395,A/Massachusetts/05/2013(H3N2) 150 >KF790409,A/New York/06/2013(H3N2) .......................A...T..........C.............................G..T.......G...A........................A........................................................ 8 8 , 8 8 150:>KF790409,A/New York/06/2013(H3N2) 151 >KF789626,A/North Carolina/04/2013(H3N2) .......................A...T.......A..C.............................G..T.......G...A........................A.......A................................................ 10 10 , 10 10 151:>KF789626,A/North Carolina/04/2013(H3N2) 152 >KF789898,A/New Jersey/03/2013(H3N2) .........A.............A...T..........C.............................G..T.......G...A................................A................................................ 9 9 , 9 9 152:>KF789898,A/New Jersey/03/2013(H3N2) 153 >KF790017,A/Wisconsin/08/2013(H3N2) .........A.............A...T..........C.............................G..T.......G...A................................................................................. 8 8 , 8 8 153:>KF790017,A/Wisconsin/08/2013(H3N2) 154 >KF790490,A/Oregon/11/2012(H3N2) .........T.............A...T..........C.............................G..T.......G...A................................................................................. 8 8 , 8 8 154:>KF790490,A/Oregon/11/2012(H3N2) 155 >KF790281,A/New York/39/2012(H3N2) .......................A...T..........C.............................G..T.......G...A................................................................................. 7 7 , 7 7 155:>KF790281,A/New York/39/2012(H3N2) 156 >KF790014,A/Oklahoma/08/2013(H3N2) .......................A...T..........C.............................G..T.......G...A................................................................................. 7 7 , 7 7 156:>KF790014,A/Oklahoma/08/2013(H3N2) 157 >KF789985,A/Washington/50/2012(H3N2) .......................A...T..........C.............................G..T.......G...A................................................................................. 7 7 , 7 7 157:>KF789985,A/Washington/50/2012(H3N2) 158 >KF789948,A/Washington/07/2013(H3N2) .......................A...T..........C.............................G..T.......G...A................................................................................. 7 7 , 7 7 158:>KF789948,A/Washington/07/2013(H3N2) 159 >KF790326,A/District Of Columbia/02/2012(H3N2) .......................A...T..........C.............................G..T.......G...A................................................................................. 7 7 , 7 7 159:>KF790326,A/District Of Columbia/02/2012(H3N2) 160 >KF789887,A/Virginia/03/2013(H3N2) .......................A...T..........C.............................G..T.......G...A................................................................................. 7 7 , 7 7 160:>KF789887,A/Virginia/03/2013(H3N2) 161 >KF790353,A/Indiana/01/2013(H3N2) .......................A...T..........C.............................G..T.......G...A................................................................................. 7 7 , 7 7 161:>KF790353,A/Indiana/01/2013(H3N2) 162 >KF790366,A/District Of Columbia/01/2013(H3N2) .......................A...T..........C.............................G..T.......G...A................................................................................. 7 7 , 7 7 162:>KF790366,A/District Of Columbia/01/2013(H3N2) 163 >KF790379,A/Minnesota/04/2013(H3N2) .......................A...T..........C.............................G..T.......G...A................................................................................. 7 7 , 7 7 163:>KF790379,A/Minnesota/04/2013(H3N2) 164 >KF789651,A/Alaska/06/2013(H3N2) .......................A...T..........C.............................G..T.......G...A................................................................................. 7 7 , 7 7 164:>KF789651,A/Alaska/06/2013(H3N2) 165 >KF790497,A/Minnesota/17/2012(H3N2) .......................A...T..........C.............................G..T.......G...A................................................................................. 7 7 , 7 7 165:>KF790497,A/Minnesota/17/2012(H3N2) 166 >KF790423,A/Arizona/11/2012(H3N2) .......................A...T..........C.............................G..T.......G...A................................................................................. 7 7 , 7 7 166:>KF790423,A/Arizona/11/2012(H3N2) 167 >KF789552,A/Colorado/02/2013(H3N2) .......................A...T..........C.............................G..T.......G...A................................................................................. 7 7 , 7 7 167:>KF789552,A/Colorado/02/2013(H3N2) 168 >Index/32g12f1.c2,10-37 .......................A...T..........C.............................G..T.......G...A................................................................................. 7 7 , 7 7 168:>Index/32g12f1.c2,10-37 169 >KF789548,A/Idaho/03/2013(H3N2) .......................A...T..........C.............................G..T.......G...A................................................................................. 7 7 , 7 7 169:>KF789548,A/Idaho/03/2013(H3N2) 170 >KF789576,A/Montana/13/2012(H3N2) .......................A...T..........C.............................G..T.......G...A................................................................................. 7 7 , 7 7 170:>KF789576,A/Montana/13/2012(H3N2) 171 >KF789598,A/New Jersey/04/2012(H3N2) .......................A...T..........C.............................G..T.......G...A................................................................................. 7 7 , 7 7 171:>KF789598,A/New Jersey/04/2012(H3N2) 172 >KF789631,A/Texas/09/2013(H3N2) .......................A...T..........C.............................G..T.......G...A................................................................................. 7 7 , 7 7 172:>KF789631,A/Texas/09/2013(H3N2) 173 >KF790385,A/Alaska/05/2013(H3N2) .......................A...T..........C.............................G..T.......G...A................................................................................. 7 7 , 7 7 173:>KF790385,A/Alaska/05/2013(H3N2) 174 >KF789738,A/Alaska/01/2013(H3N2) .......................A...T..........C.............................G..T.......G...A................................................................................. 7 7 , 7 7 174:>KF789738,A/Alaska/01/2013(H3N2) 175 >KF789831,A/New York/47/2012(H3N2) .......................A...T..........C.............................G..T.......G...A................................................................................. 7 7 , 7 7 175:>KF789831,A/New York/47/2012(H3N2) 176 >KF790341,A/Utah/03/2013(H3N2) .......................A...T..........C.............................G..T.......G...A................................................................................. 7 7 , 7 7 176:>KF790341,A/Utah/03/2013(H3N2) 177 >KF790328,A/New Jersey/02/2013(H3N2) .......................A...T..........C.............................G..T.......G...A................................................................................. 7 7 , 7 7 177:>KF790328,A/New Jersey/02/2013(H3N2) 178 >KF789946,A/Delaware/24/2012(H3N2) .......................A...T..........C.............................G..T.......G...A................................................................................. 7 7 , 7 7 178:>KF789946,A/Delaware/24/2012(H3N2) 179 >KF789961,A/Rhode Island/02/2013(H3N2) .......................A...T..........C.............................G..T.......G...A................................................................................. 7 7 , 7 7 179:>KF789961,A/Rhode Island/02/2013(H3N2) 180 >KF790008,A/Texas/81/2012(H3N2) .......................A...T..........C.............................G..T.......G...A................................................................................. 7 7 , 7 7 180:>KF790008,A/Texas/81/2012(H3N2) 181 >KF790221,A/Arizona/09/2012(H3N2) .......................A...T..........C.............................G..T.......G...A................................................................................. 7 7 , 7 7 181:>KF790221,A/Arizona/09/2012(H3N2) 182 >KF790043,A/Florida/09/2013(H3N2) .......................A...T..........C.............................G..T.......G...A................................................................................. 7 7 , 7 7 182:>KF790043,A/Florida/09/2013(H3N2) 183 >KF790273,A/California/42/2012(H3N2) .......................A...T..........C.............................G..T.......G...A................................................................................. 7 7 , 7 7 183:>KF790273,A/California/42/2012(H3N2) 184 >KF790124,A/California/04/2013(H3N2) .......................A...T..........C.............................G..T.......G...A................................................................................. 7 7 , 7 7 184:>KF790124,A/California/04/2013(H3N2) 185 >KF790247,A/New York/39/2012(H3N2) .......................A...T..........C.............................G..T.......G...A................................................................................. 7 7 , 7 7 185:>KF790247,A/New York/39/2012(H3N2) 186 >KF790194,A/Florida/40/2012(H3N2) .......................A...T..........C.............................G..T.......G...A................................................................................. 7 7 , 7 7 186:>KF790194,A/Florida/40/2012(H3N2) 187 >KF790451,A/Oklahoma/05/2013(H3N2) .......................A...T..........C.............................G..T.......G...A................................................................................. 7 7 , 7 7 187:>KF790451,A/Oklahoma/05/2013(H3N2) 188 >KF790168,A/New York/37/2012(H3N2) .......................A...T..........C.............................G..T.......G...A................................................................................. 7 7 , 7 7 188:>KF790168,A/New York/37/2012(H3N2) 189 >KF790130,A/Colorado/27/2012(H3N2) .......................A...T..........C.............................G..T.......G...A................................................................................. 7 7 , 7 7 189:>KF790130,A/Colorado/27/2012(H3N2) 190 >KF790267,A/Alabama/18/2012(H3N2) .......................A...T..........C.............................G..T.......G...A................................................................................. 7 7 , 7 7 190:>KF790267,A/Alabama/18/2012(H3N2) 191 >KF790079,A/Nebraska/02/2013(H3N2) .......................A...T..........C.............................G..T.......G...A................................................................................. 7 7 , 7 7 191:>KF790079,A/Nebraska/02/2013(H3N2) 192 >KF790261,A/Rhode Island/08/2012(H3N2) .......................A...T..........C.............................G..T.......G...A................................................................................. 7 7 , 7 7 192:>KF790261,A/Rhode Island/08/2012(H3N2) 193 >KF790250,A/Indiana/161/2012(H3N2) .......................A...T..........C.............................G..T.......G...A................................................................................. 7 7 , 7 7 193:>KF790250,A/Indiana/161/2012(H3N2) 194 >KF790186,A/Washington/52/2012(H3N2) .......................A...T..........C.............................G..T.......G...A................................................................................. 7 7 , 7 7 194:>KF790186,A/Washington/52/2012(H3N2) 195 >KF790215,A/Delaware/10/2012(H3N2) .......................A...T..........C.............................G..T.......G...A................................................................................. 7 7 , 7 7 195:>KF790215,A/Delaware/10/2012(H3N2) 196 >KF790453,A/North Dakota/01/2013(H3N2) .......................A...T..........C.............................G..T.......G...A................................................................................. 7 7 , 7 7 196:>KF790453,A/North Dakota/01/2013(H3N2) 197 >KF790159,A/Virginia/06/2013(H3N2) .......................A...T..........C.............................G..T.......G...A................................................................................. 7 7 , 7 7 197:>KF790159,A/Virginia/06/2013(H3N2) 198 >KF790082,A/Minnesota/01/2013(H3N2) .......................A...T..........C.............................G..T.......G...A................................................................................. 7 7 , 7 7 198:>KF790082,A/Minnesota/01/2013(H3N2) 199 >KF790074,A/Vermont/28/2012(H3N2) .......................A...T..........C.............................G..T.......G...A................................................................................. 7 7 , 7 7 199:>KF790074,A/Vermont/28/2012(H3N2) 200 >KF790291,A/Arizona/09/2012(H3N2) .......................A...T..........C.............................G..T.......G...A................................................................................. 7 7 , 7 7 200:>KF790291,A/Arizona/09/2012(H3N2) 201 >KF790018,A/New York/05/2013(H3N2) .......................A...T..........C.............................G..T.......G...A................................................................................. 7 7 , 7 7 201:>KF790018,A/New York/05/2013(H3N2) 202 >KF789996,A/New York/35/2012(H3N2) .......................A...T..........C.............................G..T.......G...A................................................................................. 7 7 , 7 7 202:>KF789996,A/New York/35/2012(H3N2) 203 >KF790309,A/Missouri/02/2013(H3N2) .......................A...T..........C.............................G..T.......G...A................................................................................. 7 7 , 7 7 203:>KF790309,A/Missouri/02/2013(H3N2) 204 >KF790324,A/Maryland/01/2013(H3N2) .......................A...T..........C.............................G..T.......G...A................................................................................. 7 7 , 7 7 204:>KF790324,A/Maryland/01/2013(H3N2) 205 >KF789917,A/North Carolina/01/2013(H3N2) .......................A...T..........C.............................G..T.......G...A................................................................................. 7 7 , 7 7 205:>KF789917,A/North Carolina/01/2013(H3N2) 206 >KF789859,A/Michigan/02/2013(H3N2) .......................A...T..........C.............................G..T.......G...A................................................................................. 7 7 , 7 7 206:>KF789859,A/Michigan/02/2013(H3N2) 207 >KF789751,A/New Mexico/05/2013(H3N2) .......................A...T..........C.............................G..T.......G...A................................................................................. 7 7 , 7 7 207:>KF789751,A/New Mexico/05/2013(H3N2) 208 >KF789712,A/Texas/91/2012(H3N2) .......................A...T..........C.............................G..T.......G...A................................................................................. 7 7 , 7 7 208:>KF789712,A/Texas/91/2012(H3N2) 209 >KF789663,A/Alabama/17/2012(H3N2) .......................A...T..........C.............................G..T.......G...A................................................................................. 7 7 , 7 7 209:>KF789663,A/Alabama/17/2012(H3N2) 210 >KC892572,A/Pennsylvania/09/2012(H3N2) .......................A...T..........C.............................G..T.......G...A................................................................................. 7 7 , 7 7 210:>KC892572,A/Pennsylvania/09/2012(H3N2) 211 >KF790420,A/New Hampshire/03/2013(H3N2) .......................A...T..........C.............................G..T.......G...A................................................................................. 7 7 , 7 7 211:>KF790420,A/New Hampshire/03/2013(H3N2) 212 >KF789556,A/California/15/2013(H3N2) .......................A...T..........C.............................G..T.......G...A................................................................................. 7 7 , 7 7 212:>KF789556,A/California/15/2013(H3N2) 213 >KF789533,A/Washington/06/2013(H3N2) .......................A...T..........C.............................G..T.......G...A................................................................................. 7 7 , 7 7 213:>KF789533,A/Washington/06/2013(H3N2) 214 >KF790444,A/Delaware/15/2012(H3N2) .......................A...T..........C.............................G..T.......G...A................................................................................. 7 7 , 7 7 214:>KF790444,A/Delaware/15/2012(H3N2) 215 >KF789557,A/Florida/06/2013(H3N2) .......................A...T..........C.............................G..T.......G...A................................................................................. 7 7 , 7 7 215:>KF789557,A/Florida/06/2013(H3N2) 216 >KF789583,A/Alabama/24/2012(H3N2) .......................A...T..........C.............................G..T.......G...A................................................................................. 7 7 , 7 7 216:>KF789583,A/Alabama/24/2012(H3N2) 217 >KF789629,A/California/16/2013(H3N2) .......................A...T..........C.............................G..T.......G...A................................................................................. 7 7 , 7 7 217:>KF789629,A/California/16/2013(H3N2) 218 >KF789698,A/Pennsylvania/09/2012(H3N2) .......................A...T..........C.............................G..T.......G...A................................................................................. 7 7 , 7 7 218:>KF789698,A/Pennsylvania/09/2012(H3N2) 219 >KF790375,A/Oklahoma/05/2013(H3N2) .......................A...T..........C.............................G..T.......G...A................................................................................. 7 7 , 7 7 219:>KF790375,A/Oklahoma/05/2013(H3N2) 220 >KF789768,A/Oregon/12/2012(H3N2) .......................A...T..........C.............................G..T.......G...A................................................................................. 7 7 , 7 7 220:>KF789768,A/Oregon/12/2012(H3N2) 221 >KF789869,A/Hawaii/02/2013(H3N2) .......................A...T..........C.............................G..T.......G...A................................................................................. 7 7 , 7 7 221:>KF789869,A/Hawaii/02/2013(H3N2) 222 >KF789928,A/Maryland/30/2012(H3N2) .......................A...T..........C.............................G..T.......G...A................................................................................. 7 7 , 7 7 222:>KF789928,A/Maryland/30/2012(H3N2) 223 >KF790320,A/Washington/04/2013(H3N2) .......................A...T..........C.............................G..T.......G...A................................................................................. 7 7 , 7 7 223:>KF790320,A/Washington/04/2013(H3N2) 224 >KF790113,A/Alabama/17/2012(H3N2) .......................A...T..........C.............................G..T.......G...A................................................................................. 7 7 , 7 7 224:>KF790113,A/Alabama/17/2012(H3N2) 225 >KF790003,A/Montana/10/2012(H3N2) .......................A...T..........C.............................G..T.......G...A................................................................................. 7 7 , 7 7 225:>KF790003,A/Montana/10/2012(H3N2) 226 >KF790022,A/North Dakota/02/2013(H3N2) .......................A...T..........C.............................G..T.......G...A................................................................................. 7 7 , 7 7 226:>KF790022,A/North Dakota/02/2013(H3N2) 227 >KF790061,A/Delaware/01/2013(H3N2) .......................A...T..........C.............................G..T.......G...A................................................................................. 7 7 , 7 7 227:>KF790061,A/Delaware/01/2013(H3N2) 228 >KF790293,A/New Hampshire/12/2012(H3N2) .......................A...T..........C.............................G..T.......G...A...C............................................................................. 8 8 , 8 8 228:>KF790293,A/New Hampshire/12/2012(H3N2) 229 >KF789995,A/Hawaii/26/2012(H3N2) .......................A...T..........C.............................G..T.......G...A...C............................................................................. 8 8 , 8 8 229:>KF789995,A/Hawaii/26/2012(H3N2) 230 >KF790426,A/Pennsylvania/21/2012(H3N2) .......................A...T..........C.............................G..T.......G...A...C............................................................................. 8 8 , 8 8 230:>KF790426,A/Pennsylvania/21/2012(H3N2) 231 >KF790436,A/Massachusetts/07/2012(H3N2) .......................A...T..........C.............................G..T.......G...A...C............................................................................. 8 8 , 8 8 231:>KF790436,A/Massachusetts/07/2012(H3N2) 232 >KF790183,A/Hawaii/28/2012(H3N2) .......................A...T..........C.............................G..T.......G...A...C............................................................................. 8 8 , 8 8 232:>KF790183,A/Hawaii/28/2012(H3N2) 233 >KF790006,A/Hawaii/25/2012(H3N2) .......................A...T..........C.............................G..T.......G...A...C............................................................................. 8 8 , 8 8 233:>KF790006,A/Hawaii/25/2012(H3N2) 234 >KF790280,A/New York/38/2012(H3N2) .......................A...T..........C.............................G..T.......G...A...C............................................................................. 8 8 , 8 8 234:>KF790280,A/New York/38/2012(H3N2) 235 >KF790240,A/Hawaii/29/2012(H3N2) .......................A...T..........C.............................G..T.......G...A...C............................................................................. 8 8 , 8 8 235:>KF790240,A/Hawaii/29/2012(H3N2) 236 >KF789916,A/Hawaii/45/2012(H3N2) .......................A...T..........C.............................G..T.......G...A...C............................................................................. 8 8 , 8 8 236:>KF789916,A/Hawaii/45/2012(H3N2) 237 >KF790219,A/New York/38/2012(H3N2) .......................A...T..........C.............................G..T.......G...A...C............................................................................. 8 8 , 8 8 237:>KF790219,A/New York/38/2012(H3N2) 238 >KF789987,A/Hawaii/25/2012(H3N2) .......................A...T..........C.............................G..T.......G...A...C............................................................................. 8 8 , 8 8 238:>KF789987,A/Hawaii/25/2012(H3N2) 239 >KF789997,A/Hawaii/26/2012(H3N2) .......................A...T..........C.............................G..T.......G...A...C............................................................................. 8 8 , 8 8 239:>KF789997,A/Hawaii/26/2012(H3N2) 240 >KF790276,A/Hawaii/30/2012(H3N2) .......................A...T..........C.............................G..T.......G...A...C............................................................................. 8 8 , 8 8 240:>KF790276,A/Hawaii/30/2012(H3N2) 241 >KF789933,A/California/49/2012(H3N2) .......................A...T.....T....C.............................G..T.......G...A...C............................................................................. 9 9 , 9 9 241:>KF789933,A/California/49/2012(H3N2) 242 >KF789875,A/New Hampshire/11/2012(H3N2) .......................A...T..........C.............................G..T.......G...A...C...............................................................G............. 9 9 , 9 9 242:>KF789875,A/New Hampshire/11/2012(H3N2) 243 >KF789659,A/New Hampshire/11/2012(H3N2) .......................A...T..........C.............................G..T.......G...A...C...............................................................G............. 9 9 , 9 9 243:>KF789659,A/New Hampshire/11/2012(H3N2) 244 >KF790450,A/New Mexico/03/2013(H3N2) .......................A...T..........C.............................G..T.......G...A...CA............................................................................ 9 9 , 9 9 244:>KF790450,A/New Mexico/03/2013(H3N2) 245 >KF789900,A/Rhode Island/06/2013(H3N2) .............G.........A...T..........C.............................G..T.......G...A............................................C.................................... 9 9 , 9 9 245:>KF789900,A/Rhode Island/06/2013(H3N2) 246 >KF789558,A/Michigan/01/2013(H3N2) A......................A...T..........C............T................G..T.......G...A................................................................................. 9 9 , 9 9 246:>KF789558,A/Michigan/01/2013(H3N2) 247 >KF790097,A/Wyoming/18/2012(H3N2) .......................A...T..........C.............................G..T.......G...A...........................C.......A............................................. 9 9 , 9 9 247:>KF790097,A/Wyoming/18/2012(H3N2) 248 >KF789538,A/Pennsylvania/03/2013(H3N2) .......................A...T..........C.............................G..T.......G...AC................................................................................ 8 8 , 8 8 248:>KF789538,A/Pennsylvania/03/2013(H3N2) 249 >KF789834,A/Rhode Island/09/2012(H3N2) .......................A...T..........C.............................G..T.......G...AC................................................................................ 8 8 , 8 8 249:>KF789834,A/Rhode Island/09/2012(H3N2) 250 >KF789773,A/North Carolina/28/2012(H3N2) .......................A...T..........C..................T..........G..T.......G...A................................................................................. 8 8 , 8 8 250:>KF789773,A/North Carolina/28/2012(H3N2) 251 >KF789735,A/Montana/03/2013(H3N2) .......................A...T..........C..................T..........G..T.......G...A................................................................................. 8 8 , 8 8 251:>KF789735,A/Montana/03/2013(H3N2) 252 >KF789853,A/West Virginia/10/2013(H3N2) .......................A...T..........C..................T..........G..T.......G...A..................................................C.............................. 9 9 , 9 9 252:>KF789853,A/West Virginia/10/2013(H3N2) 253 >KF789856,A/West Virginia/05/2013(H3N2) .......................A...T..........C..................T..........G..T.......G...A..................................................C.............................. 9 9 , 9 9 253:>KF789856,A/West Virginia/05/2013(H3N2) 254 >KF789854,A/West Virginia/11/2013(H3N2) .......................A...T..........C..................T..........G..T.......G...A..................................................C.............................. 9 9 , 9 9 254:>KF789854,A/West Virginia/11/2013(H3N2) 255 >KF789851,A/West Virginia/06/2013(H3N2) .......................A...T..........C..................T..........G..T.......G...A..................................................C.............................. 9 9 , 9 9 255:>KF789851,A/West Virginia/06/2013(H3N2) 256 >KF789945,A/Texas/01/2013(H3N2) .......................A...T..........C.............................G..T.......G...A..........G...................................................................... 8 8 , 8 8 256:>KF789945,A/Texas/01/2013(H3N2) 257 >KF789703,A/Montana/14/2012(H3N2) .......................A...T..........C.............................G..T......AG...A................................................................................. 8 8 , 8 8 257:>KF789703,A/Montana/14/2012(H3N2) 258 >KF790433,A/Delaware/11/2012(H3N2) .......................A...T..........C.............................G..T.......G...A.....................................................................A........... 8 8 , 8 8 258:>KF790433,A/Delaware/11/2012(H3N2) 259 >KF790301,A/Delaware/07/2013(H3N2) .......................AA..T..........C.............................G..T.......G...A................................................................................. 8 8 , 8 8 259:>KF790301,A/Delaware/07/2013(H3N2) 260 >KF790338,A/Kentucky/01/2013(H3N2) .......................A...T..........C.............................G..T.......G...A........................................................................G........ 8 8 , 8 8 260:>KF790338,A/Kentucky/01/2013(H3N2) 261 >KF790070,A/Oregon/15/2012(H3N2) .......................A...T..........C.......G.....................G..T.......G...A................................................................................. 8 8 , 8 8 261:>KF790070,A/Oregon/15/2012(H3N2) 262 >KF789610,A/Wyoming/03/2013(H3N2) .......................A...T..........C.............................G..T.......G...A..............A.................................................................. 8 8 , 8 8 262:>KF789610,A/Wyoming/03/2013(H3N2) 263 >KF790340,A/California/18/2013(H3N2) ........G..............A...T..........C.............................G..T.......G...A................................................................................. 8 8 , 8 8 263:>KF790340,A/California/18/2013(H3N2) 264 >KF789649,A/New Mexico/11/2013(H3N2) ...R...................A...T..........C.............................G..T.......G...A................................................................................. 8 8 , 8 8 264:>KF789649,A/New Mexico/11/2013(H3N2) 265 >KF789717,A/Nevada/27/2012(H3N2) .......................A...T..........C.....A.......................G..T.......G...A................................................................................A 9 9 , 9 9 265:>KF789717,A/Nevada/27/2012(H3N2) 266 >KF790315,A/Nevada/36/2012(H3N2) .......................A...T..........C.....A.......................G..T.......G...A................................................................................A 9 9 , 9 9 266:>KF790315,A/Nevada/36/2012(H3N2) 267 >KF790506,A/Nevada/03/2013(H3N2) .......................A...T..........C.....A.......................G..T.......G...A................................................................................A 9 9 , 9 9 267:>KF790506,A/Nevada/03/2013(H3N2) 268 >KF789824,A/Idaho/38/2012(H3N2) .......................A...T..........C.............................G..T.......G...A................................................................................A 8 8 , 8 8 268:>KF789824,A/Idaho/38/2012(H3N2) 269 >KF790489,A/Utah/27/2012(H3N2) .......................A...T..........C.............................G..T.......G...A................................................................................A 8 8 , 8 8 269:>KF790489,A/Utah/27/2012(H3N2) 270 >KF790505,A/Washington/53/2012(H3N2) .......................A...T..........C.............................G..T.......G...A................................................................................A 8 8 , 8 8 270:>KF790505,A/Washington/53/2012(H3N2) 271 >KF789959,A/Montana/01/2013(H3N2) .......................A...T..........C.............................G..T.......G...A................................................................................A 8 8 , 8 8 271:>KF789959,A/Montana/01/2013(H3N2) 272 >KF790102,A/Idaho/23/2012(H3N2) .......................A...T..........C.............................G..T.......G...A................................................................................A 8 8 , 8 8 272:>KF790102,A/Idaho/23/2012(H3N2) 273 >KF789798,A/Idaho/37/2012(H3N2) .......................A...T..........C.............................G..T.......G...A................................................................................A 8 8 , 8 8 273:>KF789798,A/Idaho/37/2012(H3N2) 274 >KF790515,A/Idaho/24/2012(H3N2) .......................A...T..........C.............................G..T.......G...A................................................................................A 8 8 , 8 8 274:>KF790515,A/Idaho/24/2012(H3N2) 275 >KF789929,A/Maryland/29/2012(H3N2) .......................A...T..........C.............................G..T.......G...A............A.....................A.............................G................ 10 10 , 10 10 275:>KF789929,A/Maryland/29/2012(H3N2) 276 >KF790026,A/New Mexico/08/2013(H3N2) .......................A...T..........C.............................G..T.......G...A................................................................G................ 8 8 , 8 8 276:>KF790026,A/New Mexico/08/2013(H3N2) 277 >KF789608,A/Oklahoma/06/2013(H3N2) .......................A...T..........C.............................G..T.......G...A................................................................G................ 8 8 , 8 8 277:>KF789608,A/Oklahoma/06/2013(H3N2) 278 >KF789564,A/Florida/12/2013(H3N2) .......................A...T..........C.............................G..T.......G...A.........G....................................................................... 8 8 , 8 8 278:>KF789564,A/Florida/12/2013(H3N2) 279 >KF790332,A/Massachusetts/04/2013(H3N2) .......................A...T..........C.............................G..T...........A................................................................................. 6 6 , 6 6 279:>KF790332,A/Massachusetts/04/2013(H3N2) 280 >KF789786,A/Washington/60/2012(H3N2) .......................A...T..........C.............................G..T.......G...A.......................T......................................................... 8 8 , 8 8 280:>KF789786,A/Washington/60/2012(H3N2) 281 >KC892272,A/Alaska/04/2012(H3N2) ..G....................A...T....C.....C.............................G..T.......G...A................................................................................. 9 9 , 9 9 281:>KC892272,A/Alaska/04/2012(H3N2) 282 >KF790090,A/Alaska/04/2012(H3N2) ..G....................A...T....C.....C.............................G..T.......G...A................................................................................. 9 9 , 9 9 282:>KF790090,A/Alaska/04/2012(H3N2) 283 >KF790386,A/Maryland/05/2013(H3N2) .......................A...T..........C.............................G..T.A.....G...A.........................................................G....................... 9 9 , 9 9 283:>KF790386,A/Maryland/05/2013(H3N2) 284 >KF789700,A/Maine/05/2012(H3N2) .......................A...T..........C.............................G..T.......G.......................C............................................................. 7 7 , 7 7 284:>KF789700,A/Maine/05/2012(H3N2) 285 >KC892737,A/Maine/05/2012(H3N2) .......................A...T..........C.............................G..T.......G.......................C............................................................. 7 7 , 7 7 285:>KC892737,A/Maine/05/2012(H3N2) 286 >KF789578,A/New Hampshire/16/2012(H3N2) .......................A...T..........C............................AG..T.......G.G.R................................................................................. 9 9 , 9 9 286:>KF789578,A/New Hampshire/16/2012(H3N2) 287 >KF789652,A/Delaware/06/2013(H3N2) ......G................A...T..........C..A..........................G..T.......G...A................................................................................. 9 9 , 9 9 287:>KF789652,A/Delaware/06/2013(H3N2) 288 >KF790528,A/Maryland/33/2012(H3N2) .......................A...T..........C.T...........................G..T.......G...A....................................T............................................ 9 9 , 9 9 288:>KF790528,A/Maryland/33/2012(H3N2) 289 >KF790117,A/Louisiana/04/2013(H3N2) ...............G.......A...T..........C...................A.........G..T.......G...A................................................................................. 9 9 , 9 9 289:>KF790117,A/Louisiana/04/2013(H3N2) 290 >KF790415,A/Delaware/08/2013(H3N2) .......................A...T..........C.....................C....C..G..T.......G...A................................................................................. 9 9 , 9 9 290:>KF790415,A/Delaware/08/2013(H3N2) 291 >A/Czech Republic/121/2012,2012/03/06,Czech Republic .......................A...T..........CC.........A..................G..T.......G...A....................................................................G............ 10 10 , 10 10 291:>A/Czech Republic/121/2012,2012/03/06,Czech Republic 292 >KF790038,A/Massachusetts/07/2013(H3N2) .Y.....................A...T..........C.............................G..T.......G...A....................................................................R............ 9 9 , 9 9 292:>KF790038,A/Massachusetts/07/2013(H3N2) 293 >KF789905,A/New Jersey/05/2013(H3N2) .......................A...T..........C......R..A...................G..T.......G...A................................................................................. 9 9 , 9 9 293:>KF789905,A/New Jersey/05/2013(H3N2) 294 >KF790156,A/North Carolina/02/2013(H3N2) .......................A...T..........C.............................G..T.......G...A..................A..................................C........................... 9 9 , 9 9 294:>KF790156,A/North Carolina/02/2013(H3N2) 295 >KF790152,A/Oklahoma/03/2013(H3N2) .......................A...T..........C.............................G..T.......G...A..................A..................................C........................... 9 9 , 9 9 295:>KF790152,A/Oklahoma/03/2013(H3N2) 296 >KF790056,A/North Carolina/06/2013(H3N2) .......................A...T..G.......C....................R........G..T.......G...A................................................................................. 9 9 , 9 9 296:>KF790056,A/North Carolina/06/2013(H3N2) 297 >KF790062,A/Texas/111/2012(H3N2) .......................A...T........C.C.............................G..T.......G...A.......................................................................G......... 9 9 , 9 9 297:>KF790062,A/Texas/111/2012(H3N2) 298 >KF790319,A/Utah/07/2013(H3N2) ..........GA...........A...T..........C.............................GA.T.......G...A................................................................................. 10 10 , 10 10 298:>KF790319,A/Utah/07/2013(H3N2) 299 >KF790365,A/Texas/11/2013(H3N2) .......................A...T..........C.............................GA.T.......G...A................................................................................. 8 8 , 8 8 299:>KF790365,A/Texas/11/2013(H3N2) 300 >KF789926,A/Hawaii/24/2012(H3N2) .......................A...T..........C.............................GA.T.......G...A................................................................................. 8 8 , 8 8 300:>KF789926,A/Hawaii/24/2012(H3N2) 301 >KF790107,A/Kentucky/16/2012(H3N2) .......................A...T..........C.............................G..T.......G...A.............................................................T................... 8 8 , 8 8 301:>KF790107,A/Kentucky/16/2012(H3N2) 302 >KF790015,A/Florida/08/2013(H3N2) .......................A...T..........C.............................G..T.......G...A......................................A.......................................... 8 8 , 8 8 302:>KF790015,A/Florida/08/2013(H3N2) 303 >KF790412,A/New York/60/2012(H3N2) .......................A...T..........C.............................G..T.......G...A................................................A................................ 8 8 , 8 8 303:>KF790412,A/New York/60/2012(H3N2) 304 >KF789616,A/Maryland/03/2013(H3N2) .......................A...T..........C.............................G..T..T....G...A................................................................................. 8 8 , 8 8 304:>KF789616,A/Maryland/03/2013(H3N2) 305 >KF789611,A/Kentucky/03/2013(H3N2) .......................A...T..........C...............T.............G..T.......G...A................................................................................. 8 8 , 8 8 305:>KF789611,A/Kentucky/03/2013(H3N2) 306 >KF789825,A/Connecticut/13/2012(H3N2) .......................A...T..........C...............T.............G..T.......G...A................................A................................................ 9 9 , 9 9 306:>KF789825,A/Connecticut/13/2012(H3N2) 307 >KF790116,A/Alaska/03/2013(H3N2) .......................A...T..........C.............................G..T.......G...A................................A....T........................................... 9 9 , 9 9 307:>KF790116,A/Alaska/03/2013(H3N2) 308 >KF789839,A/Wisconsin/06/2013(H3N2) .................T.....A...T..........C.............................G..T.......G...A................................A................................................ 9 9 , 9 9 308:>KF789839,A/Wisconsin/06/2013(H3N2) 309 >KF790388,A/Maryland/06/2013(H3N2) .......................A...T..........C.............................G..T.......G...A................T...............A................................................ 9 9 , 9 9 309:>KF790388,A/Maryland/06/2013(H3N2) 310 >KF790352,A/New Mexico/24/2012(H3N2) .......................A...T..........C.............................G..T.......G...A................................A................................................ 8 8 , 8 8 310:>KF790352,A/New Mexico/24/2012(H3N2) 311 >KF789543,A/Massachusetts/06/2013(H3N2) .......................A...T..........C.............................G..T.......G...A................................A................................................ 8 8 , 8 8 311:>KF789543,A/Massachusetts/06/2013(H3N2) 312 >KF789883,A/Kansas/16/2012(H3N2) .......................A...T..........C......................A......G..T.......G...A................................A................................................ 9 9 , 9 9 312:>KF789883,A/Kansas/16/2012(H3N2) 313 >KF789909,A/Wyoming/01/2013(H3N2) .......................A...T..........C......................A......G..T.......G...A................................A................................................ 9 9 , 9 9 313:>KF789909,A/Wyoming/01/2013(H3N2) 314 >KF789981,A/West Virginia/01/2013(H3N2) .......................A...T..........C.............................G..T.......G...A................................R.........................Y...................... 9 9 , 9 9 314:>KF789981,A/West Virginia/01/2013(H3N2) 315 >KF790480,A/Massachusetts/11/2013(H3N2) .......................A...T..........C.............................G..T.......G...A..........................................................A...................... 8 8 , 8 8 315:>KF790480,A/Massachusetts/11/2013(H3N2) 316 >KF789743,A/New Mexico/06/2013(H3N2) .....................G.A...T..........C.............................G..T.......G...A................................................................................. 8 8 , 8 8 316:>KF789743,A/New Mexico/06/2013(H3N2) 317 >KF789691,A/New York/04/2013(H3N2) .......................A...T..........C.............................G..T.......G...A.A............................................................................... 8 8 , 8 8 317:>KF789691,A/New York/04/2013(H3N2) 318 >KF790364,A/Iowa/02/2013(H3N2) .......................A...T..........C.............................G..T.......G...A.A............................................................................... 8 8 , 8 8 318:>KF790364,A/Iowa/02/2013(H3N2) 319 >KF789683,A/New Jersey/08/2012(H3N2) .......................A...T..........C.............................G..T.......G...A.A............................................................................... 8 8 , 8 8 319:>KF789683,A/New Jersey/08/2012(H3N2) 320 >KF790234,A/Pennsylvania/20/2012(H3N2) .......................A...T..........C.............................G..T.......G...A.A............................................................................... 8 8 , 8 8 320:>KF790234,A/Pennsylvania/20/2012(H3N2) 321 >KF789865,A/Arkansas/07/2013(H3N2) .......................A...T..........C........A....................G..T.......G...A.A............................................................................... 9 9 , 9 9 321:>KF789865,A/Arkansas/07/2013(H3N2) 322 >KF790095,A/Arkansas/06/2013(H3N2) .......................A...T..........C........A....................G..T.......G...A.A............................................................................... 9 9 , 9 9 322:>KF790095,A/Arkansas/06/2013(H3N2) 323 >KF789867,A/Arkansas/04/2013(H3N2) .......................A...T..........C........A....................G..T.......G...A.A............................................................................... 9 9 , 9 9 323:>KF789867,A/Arkansas/04/2013(H3N2) 324 >KF790145,A/Arkansas/13/2013(H3N2) .......................A...T..........C........A....................G..T.......G...A.A............................................................................... 9 9 , 9 9 324:>KF790145,A/Arkansas/13/2013(H3N2) 325 >KF789868,A/Arkansas/03/2013(H3N2) .......................A...T..........C........A....................G..T.......G...A.A............................................................................... 9 9 , 9 9 325:>KF789868,A/Arkansas/03/2013(H3N2) 326 >KF790181,A/Alaska/23/2012(H3N2) .......................A..............C........C..............A.....G..........G...A................................................................................. 7 7 , 7 7 326:>KF790181,A/Alaska/23/2012(H3N2) 327 >KF789800,A/Alaska/31/2012(H3N2) .......................A..............C........C..............A.....G..........G...A................................................................................. 7 7 , 7 7 327:>KF789800,A/Alaska/31/2012(H3N2) 328 >KF789581,A/North Dakota/07/2012(H3N2) .......................A..............C........C..............A.....G..........G...A...............................A................................................. 8 8 , 8 8 328:>KF789581,A/North Dakota/07/2012(H3N2) 329 >KF789880,A/Arkansas/05/2012(H3N2) .......................A..............C........C..............A...T............G...A..............A..................A............................................... 9 9 , 9 9 329:>KF789880,A/Arkansas/05/2012(H3N2) 330 >KF790089,A/Hawaii/27/2012(H3N2) .......................A..............C........C..............A.....G..........G...A..........................C...................................................... 8 8 , 8 8 330:>KF790089,A/Hawaii/27/2012(H3N2) 331 >KF790091,A/Hawaii/27/2012(H3N2) .......................A..............C........C..............A.....G..........G...A..........................C...................................................... 8 8 , 8 8 331:>KF790091,A/Hawaii/27/2012(H3N2) 332 >KF790231,A/Alaska/24/2012(H3N2) .......................A..............C........C..............A.G...G..........G...A................................................................................. 8 8 , 8 8 332:>KF790231,A/Alaska/24/2012(H3N2) 333 >KF790369,A/Alaska/24/2012(H3N2) .......................A..............C........C..............A.G...G..........G...A................................................................................. 8 8 , 8 8 333:>KF790369,A/Alaska/24/2012(H3N2) 334 >KF790203,A/Alaska/22/2012(H3N2) .......................A..............C........C.....A........A.....G..........G...A................................................................................. 8 8 , 8 8 334:>KF790203,A/Alaska/22/2012(H3N2) 335 >KF790165,A/Alaska/22/2012(H3N2) .......................A..............C........C.....A........A.....G..........G...A................................................................................. 8 8 , 8 8 335:>KF790165,A/Alaska/22/2012(H3N2) 336 >KF790204,A/Alaska/23/2012(H3N2) .......................A..............C........C..............A.....G..........G...A................................................................................. 7 7 , 7 7 336:>KF790204,A/Alaska/23/2012(H3N2) 337 >KF790143,A/Texas/14/2013(H3N2) .....G..................A.............C.............................G..........G...A.........G...............................T....A...........G...................... 10 10 , 10 10 337:>KF790143,A/Texas/14/2013(H3N2) 338 >KF789852,A/Massachusetts/12/2013(H3N2) .....G..................A.............C.............................G..........G...A........GG..............................AT....A...........G...................... 12 12 , 12 12 338:>KF789852,A/Massachusetts/12/2013(H3N2) 339 >KF790298,A/Massachusetts/13/2013(H3N2) .....G.....A............A.............C.............................G..........G...A.........G...............................T....A...........G...................... 11 11 , 11 11 339:>KF790298,A/Massachusetts/13/2013(H3N2) 340 >KF790355,A/Missouri/05/2013(H3N2) .....G..................A.............C.............................G..........G...A...C.....G...............................T....A.................................. 10 10 , 10 10 340:>KF790355,A/Missouri/05/2013(H3N2) 341 >KF789862,A/Florida/21/2013(H3N2) .....G..................A.............C.............................G..........G...A...C.....G...............................T....A.................................. 10 10 , 10 10 341:>KF789862,A/Florida/21/2013(H3N2) 342 >KF790400,A/New York/61/2012(H3N2) .........A............................C.......G.....................G..........G...A................................................................................. 6 6 , 6 6 342:>KF790400,A/New York/61/2012(H3N2) ---Index----------------------------------------------------CTAGTAAGACTGCACAAACCTATGGTTGGCACTCTGTATTCTACGGATGGGCTGCATCCATGGTATGGAGGCCGCGTAGAGATGTGTTGCTATAAGGGGGCGGTTGGAGGTTCGTGGGGGCCGTGCGATAGCGTTCGTATGACCACCAACCAAGAAAAGGCCCTG -codon-position--------------------------------------------- 11 2 12 1 2 21 1 1 2 1 1 12 1 1 1 2 1 1 21 11211 121111112 1 121 12 11 11 11 1212121 000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000 000000000001111111111111111112222222222222222333333333333333344444444444444444444555555555555555566666666666666667777777777777777777888888888888888888888899999999999 334444568990012455666778888890144455666779999000112233555899900112234556777888899012224444556789900000112233457781223455666667788899022334444445556677888911234555677 690358197392812409378570356957606958147361357369254803124108928140681698147037926141580136254321403469281502222851035468023675801203839890346780593714256829530026749Leave a comment:
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Re: H3n2
HAs from India, summer 2013, have nucleotide mutations:
A430G,A472G,(T518C),G1087A,G1080A
giving amino-acid mutations T144A,R158G,(L173S),V363K
Code:000000000000000000000000000000000000000000000000000000000000000000000111111111111111111111111111 000000111111222222223333444444444555555556666666667777778888889999999000000111112233444555555556 034577048999012344891122135778888012445690011468891223693378891225678004588338995945124001244677 998202862016598203516838906280234182369546925002705696590732735344653597378015574643683798458081 -codon-position----------------------------------------------------- 11 221211 1 1 2121 11 2 1 2 11 1 1 1 1 12 22 2 2 1 122 1 1 ---Index------------------------------------------------------------TGTAACAAGACGGGTGCACTCCATGACAATACAGTACGAATTGCTGCAACGCCAGCGGCTATCAACCTAGCCCGTTAGAGCCGTGGTGCAAGCCAA 1 >Index/USA-2007 ................................................................................................ 0 0 , 0 0 1:>Index/USA-2007 2 >Index/Perth-like/2009 ...............A.............A.....C...C....A.......T......................G...A.T..........TAG. 12 12 , 12 12 2:>Index/Perth-like/2009 3 >Index/2009/Egypt/Iowa .....................A.........T...C...C....G.AG....T................A..A..G...A.T...........AG. 15 15 , 15 15 3:>Index/2009/Egypt/Iowa 4 >Index/H3N3-2011-reassortedEI/2011(H3N2) ......G.....A......C.A.C.......T...C...C....G.AG.T..TG......C........AA.A..GG..A.T.C.....G.A.AG. 27 27 , 27 27 4:>Index/H3N3-2011-reassortedEI/2011(H3N2) 5 >Index/H3N2-2011-normalEI/2011(H3N2) C........G...T.......AG........T...C...C....G.AG....T...............GA..AA.G.A.A.T...........AG. 22 22 , 22 22 5:>Index/H3N2-2011-normalEI/2011(H3N2) 6 >Index/2009/Egypt-Iowa+NA,2009// .....................A.........T...C...C....G.AG....T................A..A..G...A.T...........AG. 15 15 , 15 15 6:>Index/2009/Egypt-Iowa+NA,2009// 7 >A/Czech Republic/121/2012,2012/03/06,Czech Republic .....T.GA.TA..C......A..A.T....T.A.C..GC....GTAG..ATT......G........GA..A..G..CAAT...........AGG 33 33 , 33 33 7:>A/Czech Republic/121/2012,2012/03/06,Czech Republic 8 >Index/32g12f1.c2,10-37 .....T.GA.T.....T.T..A....T...GT.A.C...C....GTAG..A.T.A....G..A.....GA..A..G..CAAT........G..AGG 34 34 , 34 34 8:>Index/32g12f1.c2,10-37 9 >Index/32g12f1.c2,38-41 .....T.GA.T..A...GT..A..A.T...GT.A.C...C.CA.GTAG..A.T......G...G....GA..A..G..CAAT.......GG..AGG 38 38 , 38 38 9:>Index/32g12f1.c2,38-41 10 >Index/32g12f1.c2,42-53 .AC..................A......G.GT...C...C....G.ATG.A.T...A.A.......T..A..A..G...A.TA.AACA.....AG. 29 29 , 29 29 10:>Index/32g12f1.c2,42-53 11 >Index/32g12f1.c2,55-62 CA.GG.GG....A......CAA.C.......T...C...C....G.A..T..TGA..A..C......C.AATA..GG..A.T.C....TG.A.AG. 37 37 , 37 37 11:>Index/32g12f1.c2,55-62 12 >KF668185,A/India/LKO799/2011,2011/07/16,India,H3N2,Human,4 ------------------------......GT...C...C....GTAG..A.T...............GA..A..--------------------- 58 58 , 13 13 12:>KF668185,A/India/LKO799/2011,2011/07/16,India,H3N2,Human,4 13 >KF668186,A/India/LKO827/2011,2011/07/25,India,H3N2,Human,4 -------------------------.....GT...CT..CC...GTAG..A.T........C......GA..A----------------------- 64 64 , 16 16 13:>KF668186,A/India/LKO827/2011,2011/07/25,India,H3N2,Human,4 14 >KF668187,A/India/LKO845/2011,2011/07/26,India,H3N2,Human,4 ------------------------......GT...C...C....GTAG..A.T...............GA..A----------------------- 60 60 , 13 13 14:>KF668187,A/India/LKO845/2011,2011/07/26,India,H3N2,Human,4 15 >KF668188,A/India/LKO851/2011,2011/07/27,India,H3N2,Human,4 ------------------------......GT...C...C....GTAG..A.T...............GA..A----------------------- 60 60 , 13 13 15:>KF668188,A/India/LKO851/2011,2011/07/27,India,H3N2,Human,4 16 >KF668189,A/India/LKO856/2011,2011/07/28,India,H3N2,Human,4 ------------------------......GT...C...C....GTAG..A.T...............GA..A..--------------------- 58 58 , 13 13 16:>KF668189,A/India/LKO856/2011,2011/07/28,India,H3N2,Human,4 17 >KF668190,A/India/LKO871/2011,2011/07/29,India,H3N2,Human,4 ------------------------......GT...C...C....GTAG..A.T...............GA..A----------------------- 60 60 , 13 13 17:>KF668190,A/India/LKO871/2011,2011/07/29,India,H3N2,Human,4 18 >KF668191,A/India/LKO896/2011,2011/08/03,India,H3N2,Human,4 ------------------------......GT...C...C....GTAG..A.T...A...........GA..A----------------------- 61 61 , 14 14 18:>KF668191,A/India/LKO896/2011,2011/08/03,India,H3N2,Human,4 19 >KF668192,A/India/LKO983/2011,2011/08/25,India,H3N2,Human,4 ------------------------......GT...C...C....GTAG..A.T...............GA..A----------------------- 60 60 , 13 13 19:>KF668192,A/India/LKO983/2011,2011/08/25,India,H3N2,Human,4 20 >KF668193,A/India/LKO1442/2012,2012/01/23,India,H3N2,Human,4 ------------------------......GT...C...C....GTAG..A.T...............GA..A..--------------------- 58 58 , 13 13 20:>KF668193,A/India/LKO1442/2012,2012/01/23,India,H3N2,Human,4 21 >KF668194,A/India/LKO1501/2012,2012/02/14,India,H3N2,Human,4 ------------------------......GT...C...C....GTAG..A.T...............GA..A----------------------- 60 60 , 13 13 21:>KF668194,A/India/LKO1501/2012,2012/02/14,India,H3N2,Human,4 22 >KF668195,A/India/LKO3108/2012,2012/12/12,India,H3N2,Human,4 ------------------------......GT...C...C....GTAG..A.T...............GA..A..--------------------- 58 58 , 13 13 22:>KF668195,A/India/LKO3108/2012,2012/12/12,India,H3N2,Human,4 23 >KF668196,A/India/LKO3818/2013,2013/06/25,India,H3N2,Human,4 -------------------------GTG..GT.A.C.A.C....GTAG..A.T......G........GA..A----------------------- 67 67 , 19 19 23:>KF668196,A/India/LKO3818/2013,2013/06/25,India,H3N2,Human,4 24 >KF668197,A/India/LKO3824/2013,2013/06/26,India,H3N2,Human,4 ------------------------.GTG..GT.ACCT..C....GTAG..A.T......G....G...GA..A----------------------- 68 68 , 21 21 24:>KF668197,A/India/LKO3824/2013,2013/06/26,India,H3N2,Human,4 25 >KF668198,A/India/LKO3825/2013,2013/06/26,India,H3N2,Human,4 ------------------------.GTG..GT.ACC...C....GTAG..A.T......G........GA..A----------------------- 66 66 , 19 19 25:>KF668198,A/India/LKO3825/2013,2013/06/26,India,H3N2,Human,4 26 >KF668199,A/India/LKO3839/2013,2013/06/29,India,H3N2,Human,4 ------------------------.GTG..GT.ACC...C....GTAG..A.T......G........GA..A----------------------- 66 66 , 19 19 26:>KF668199,A/India/LKO3839/2013,2013/06/29,India,H3N2,Human,4 27 >KF668200,A/India/LKO3863/2013,2013/07/06,India,H3N2,Human,4 --------------------------TG..GT.A.C...C....GTAG..A.T......G........GA..A----------------------- 66 66 , 17 17 27:>KF668200,A/India/LKO3863/2013,2013/07/06,India,H3N2,Human,4 28 >KF668201,A/India/LKO3876/2013,2013/07/09,India,H3N2,Human,4 -------------------------GTG..GTGACC...C....GTAG..A.T......G........GA..A----------------------- 68 68 , 20 20 28:>KF668201,A/India/LKO3876/2013,2013/07/09,India,H3N2,Human,4 29 >KF668202,A/India/LKO3887/2013,2013/07/10,India,H3N2,Human,4 --------------------------TG..GT.A.C...C....GTAG..A.T......G.....T..GA..AAA--------------------- 67 67 , 20 20 29:>KF668202,A/India/LKO3887/2013,2013/07/10,India,H3N2,Human,4 30 >KF668203,A/India/LKO3889/2013,2013/07/11,India,H3N2,Human,4 -------------------------GTG..GT.ACC...C....GTAG..A.T......G........GA..A----------------------- 67 67 , 19 19 30:>KF668203,A/India/LKO3889/2013,2013/07/11,India,H3N2,Human,4 31 >KF668204,A/India/LKO3893/2013,2013/07/12,India,H3N2,Human,4 -------------------------GTG..GT.A.C...C...TGTAG..A.T......G.....T..GA..A----------------------- 68 68 , 20 20 31:>KF668204,A/India/LKO3893/2013,2013/07/12,India,H3N2,Human,4 32 >KF668205,A/India/LKO3906/2013,2013/07/15,India,H3N2,Human,4 --------------------------TG..GT.ACC...C....GTAG..A.T......G........GA..AAA--------------------- 67 67 , 20 20 32:>KF668205,A/India/LKO3906/2013,2013/07/15,India,H3N2,Human,4 33 >KF668206,A/India/LKO3913/2013,2013/07/16,India,H3N2,Human,4 ------------------------.GTG..GT.A.C...C....GTAG..A.T......G........GA..AAA--------------------- 65 65 , 20 20 33:>KF668206,A/India/LKO3913/2013,2013/07/16,India,H3N2,Human,4 34 >KF668207,A/India/LKO3914/2013,2013/07/16,India,H3N2,Human,4 ------------------------.GTG..GT.A.C...C....GTAG..A.T..T...G........GA..AAA--------------------- 66 66 , 21 21 34:>KF668207,A/India/LKO3914/2013,2013/07/16,India,H3N2,Human,4 ---Index------------------------------------------------------------TGTAACAAGACGGGTGCACTCCATGACAATACAGTACGAATTGCTGCAACGCCAGCGGCTATCAACCTAGCCCGTTAGAGCCGTGGTGCAAGCCAA -codon-position----------------------------------------------------- 11 221211 1 1 2121 11 2 1 2 11 1 1 1 1 12 22 2 2 1 122 1 1 000000000000000000000000000000000000000000000000000000000000000000000111111111111111111111111111 000000111111222222223333444444444555555556666666667777778888889999999000000111112233444555555556 034577048999012344891122135778888012445690011468891223693378891225678004588338995945124001244677 998202862016598203516838906280234182369546925002705696590732735344653597378015574643683798458081
NA has mutations A464T,A752T,A943G,
Code:00000000000000000000000000000000000000000000000000011111111111111111111111111 00000112222223344444444445555666667777788888999999900000000111111111111222223 02778160467780922335567780199046661135723799033344401244689000112555899047899 65785954273880969591941295915933692422487618368923535947205067365568519472100 -codon-position----------------------------------------------------- 12 12 2 2 11 2 1 1 1 1 1 2 1 2 1 11 22 1 212 1 ---Index------------------------------------------------------------TATTTAAGTGAAATCCGAGGCACCACATATAACCAAGAGGCACACTTTCATAGAAGTGGGAGCAACCTAAGAGGAAA 1 >Index/USA-2007 ............................................................................. 0 0 , 0 0 1:>Index/USA-2007 2 >Index/Perth-like/2009 ............G...A.A...........G...........A..........GG...................... 7 7 , 7 7 2:>Index/Perth-like/2009 3 >Index/2009/Egypt/Iowa ..CCCG............A...T.......G..............................A.............G. 9 9 , 9 9 3:>Index/2009/Egypt/Iowa 4 >Index/H3N3-2011-reassortedEI/2011(H3N2) ..................A...........G.........T..................AC.T...........T.C 8 8 , 8 8 4:>Index/H3N3-2011-reassortedEI/2011(H3N2) 5 >Index/H3N2-2011-normalEI/2011(H3N2) ......G..A........A..........AG.T...A...T....A............AAC..G......A...T.C 16 16 , 16 16 5:>Index/H3N2-2011-normalEI/2011(H3N2) 6 >Index/2009/Egypt-Iowa+NA,2009// ..................A...........G.........T..................AC.............T.C 7 7 , 7 7 6:>Index/2009/Egypt-Iowa+NA,2009// 7 >A/Czech Republic/121/2012,2012/03/06,Czech Republic .T......CA.G.C....A...T.G.....G.T...A..AT.................AAC..........G..T.C 19 19 , 19 19 7:>A/Czech Republic/121/2012,2012/03/06,Czech Republic 8 >Index/32g12f1.c2,10-37 ........CA.G.C....A...T.G.....G.T...A..AT..C..............AAC....T.....G.AT.C 21 21 , 21 21 8:>Index/32g12f1.c2,10-37 9 >Index/32g12f1.c2,38-41 ........CA.G.C....A...T.G..G..G.T...A..AT..C..............AAC..........G..T.C 20 20 , 20 20 9:>Index/32g12f1.c2,38-41 10 >Index/32g12f1.c2,42-53 C......A..........A.T.....G...GC..GG....T..........G...A...AC......G....A.TGC 19 19 , 19 19 10:>Index/32g12f1.c2,42-53 11 >Index/32g12f1.c2,55-62 .......AC.G...T...A...........G.........T...T.....G.....C..AC.T.....G..G..T.C 17 17 , 17 17 11:>Index/32g12f1.c2,55-62 12 >KF668208,A/India/LKO799/2011,2011/07/16,India,H3N2,Human,6 --------------.T..A...TT......G.T...A...T.T....C..........AAC........G.G----- 34 34 , 15 15 12:>KF668208,A/India/LKO799/2011,2011/07/16,India,H3N2,Human,6 13 >KF668209,A/India/LKO827/2011,2011/07/25,India,H3N2,Human,6 ---------------T..A...TT......G.T...A...T.T....C..........AAC........-------- 36 36 , 13 13 13:>KF668209,A/India/LKO827/2011,2011/07/25,India,H3N2,Human,6 14 >KF668210,A/India/LKO845/2011,2011/07/26,India,H3N2,Human,6 --------------.T..A...TT......G.T...A...T.T....C..........AAC........G.G----- 34 34 , 15 15 14:>KF668210,A/India/LKO845/2011,2011/07/26,India,H3N2,Human,6 15 >KF668211,A/India/LKO851/2011,2011/07/27,India,H3N2,Human,6 --------------.T..A...TT......G.T...A...T......C..........AAC..........G.---- 31 31 , 13 13 15:>KF668211,A/India/LKO851/2011,2011/07/27,India,H3N2,Human,6 16 >KF668212,A/India/LKO856/2011,2011/07/28,India,H3N2,Human,6 --------------.T..A...TT......G.T...A.A.T......C..........AAC........-------- 35 35 , 13 13 16:>KF668212,A/India/LKO856/2011,2011/07/28,India,H3N2,Human,6 17 >KF668213,A/India/LKO864/2011,2011/07/28,India,H3N2,Human,6 ---------------T..A...TT......G.T...A...T......C..........AAC..........G----- 33 33 , 13 13 17:>KF668213,A/India/LKO864/2011,2011/07/28,India,H3N2,Human,6 18 >KF668214,A/India/LKO871/2011,2011/07/29,India,H3N2,Human,6 ---------------T..A...TT......G.T...A...T.T....C..........AAC........-------- 36 36 , 13 13 18:>KF668214,A/India/LKO871/2011,2011/07/29,India,H3N2,Human,6 19 >KF668215,A/India/LKO896/2011,2011/08/03,India,H3N2,Human,6 --------------.T..A...TT......G.T...A...T.T....C..........AAC........G.G----- 34 34 , 15 15 19:>KF668215,A/India/LKO896/2011,2011/08/03,India,H3N2,Human,6 20 >KF668216,A/India/LKO940/2011,2011/08/11,India,H3N2,Human,6 ----------------..A...TT......G.T...A...T.T....C..........AAC........-------- 36 36 , 12 12 20:>KF668216,A/India/LKO940/2011,2011/08/11,India,H3N2,Human,6 21 >KF668217,A/India/LKO983/2011,2011/08/25,India,H3N2,Human,6 --------------.T..A...TT......G.T...A...T......C..........AAC........G.G----- 33 33 , 14 14 21:>KF668217,A/India/LKO983/2011,2011/08/25,India,H3N2,Human,6 22 >KF668218,A/India/LKO1442/2012,2012/01/23,India,H3N2,Human,6 ---------------T..A...TT......G.T...A...T.T....C..........AAC........-------- 36 36 , 13 13 22:>KF668218,A/India/LKO1442/2012,2012/01/23,India,H3N2,Human,6 23 >KF668219,A/India/LKO1501/2012,2012/02/14,India,H3N2,Human,6 ------------------A...TT......G.T...A...T.T....C..........AAC........-------- 38 38 , 12 12 23:>KF668219,A/India/LKO1501/2012,2012/02/14,India,H3N2,Human,6 24 >KF668220,A/India/LKO3108/2012,2012/12/12,India,H3N2,Human,6 ----------------.GAR..TT......G.T...A...T.T....C..........AAC........G.G----- 37 37 , 16 16 24:>KF668220,A/India/LKO3108/2012,2012/12/12,India,H3N2,Human,6 25 >KF668221,A/India/LKO3818/2013,2013/06/25,India,H3N2,Human,6 -------------------..TTT.T....G.T...AT..T......C.G........AAC..........G----- 39 39 , 15 15 25:>KF668221,A/India/LKO3818/2013,2013/06/25,India,H3N2,Human,6 26 >KF668222,A/India/LKO3824/2013,2013/06/26,India,H3N2,Human,6 ----------------------TT.T....G.T...AT..T......C.G........AAC..........G----- 41 41 , 14 14 26:>KF668222,A/India/LKO3824/2013,2013/06/26,India,H3N2,Human,6 27 >KF668223,A/India/LKO3825/2013,2013/06/26,India,H3N2,Human,6 --------------.T..A..TTT....G.G.T...AT..T......C.G........AAC..........G----- 36 36 , 17 17 27:>KF668223,A/India/LKO3825/2013,2013/06/26,India,H3N2,Human,6 28 >KF668224,A/India/LKO3839/2013,2013/06/29,India,H3N2,Human,6 --------------.T..A..TTT......G.T...AT..T......C.G........AAC...G......G----- 36 36 , 17 17 28:>KF668224,A/India/LKO3839/2013,2013/06/29,India,H3N2,Human,6 29 >KF668225,A/India/LKO3863/2013,2013/07/06,India,H3N2,Human,6 ---------------T..A..TTT......G.T...AT..T.....CC..........AAC..........G----- 36 36 , 16 16 29:>KF668225,A/India/LKO3863/2013,2013/07/06,India,H3N2,Human,6 30 >KF668226,A/India/LKO3876/2013,2013/07/09,India,H3N2,Human,6 ---------------T..A..TTT......G.T...AT..T......C.G........AAC..........G----- 36 36 , 16 16 30:>KF668226,A/India/LKO3876/2013,2013/07/09,India,H3N2,Human,6 31 >KF668227,A/India/LKO3887/2013,2013/07/10,India,H3N2,Human,6 --------------.T..A..TTT......G.TA..AT..T......C.G.......AAAC..........G----- 37 37 , 18 18 31:>KF668227,A/India/LKO3887/2013,2013/07/10,India,H3N2,Human,6 32 >KF668228,A/India/LKO3889/2013,2013/07/11,India,H3N2,Human,6 --------------.T..A..TTT......G.T...AT..TG.....C.G........AAC.....T....G----- 37 37 , 18 18 32:>KF668228,A/India/LKO3889/2013,2013/07/11,India,H3N2,Human,6 33 >KF668229,A/India/LKO3893/2013,2013/07/12,India,H3N2,Human,6 ----------------..A..TTT......G.T...AT..T......CAG..A.....AAC.........------- 39 39 , 16 16 33:>KF668229,A/India/LKO3893/2013,2013/07/12,India,H3N2,Human,6 34 >KF668230,A/India/LKO3906/2013,2013/07/15,India,H3N2,Human,6 ----------------..A..TTT......G.T...AT..T......C.G..A.....AAC..........G----- 37 37 , 16 16 34:>KF668230,A/India/LKO3906/2013,2013/07/15,India,H3N2,Human,6 35 >KF668231,A/India/LKO3913/2013,2013/07/16,India,H3N2,Human,6 ---------------T..A..TTT......G.T...AT..T......C.G........AAC..........G----- 36 36 , 16 16 35:>KF668231,A/India/LKO3913/2013,2013/07/16,India,H3N2,Human,6 36 >KF668232,A/India/LKO3914/2013,2013/07/16,India,H3N2,Human,6 -------------------..TTT......G.T...AT..T......C.G........AAC..........G----- 38 38 , 14 14 36:>KF668232,A/India/LKO3914/2013,2013/07/16,India,H3N2,Human,6 ---Index------------------------------------------------------------TATTTAAGTGAAATCCGAGGCACCACATATAACCAAGAGGCACACTTTCATAGAAGTGGGAGCAACCTAAGAGGAAA -codon-position----------------------------------------------------- 12 12 2 2 11 2 1 1 1 1 1 2 1 2 1 11 22 1 212 1 00000000000000000000000000000000000000000000000000011111111111111111111111111 00000112222223344444444445555666667777788888999999900000000111111111111222223 02778160467780922335567780199046661135723799033344401244689000112555899047899 65785954273880969591941295915933692422487618368923535947205067365568519472100Leave a comment:
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Re: H3n2
H3N2 in USA season 2011/2012
---------------------------------------
there are 3 sorts of human H3N2-HAs since July 2012 :
~75% is the Czech/121 strain , ~20 the reassorted/2011 strain, ~5% the new Texas strainLeave a comment:
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Re: H3n2
HA and NA from Japan,Hokkaido,2013 have been published.
It is very similar to the Texas genomes from Nov.
e.g. JMM_22Leave a comment:
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Re: H3n2
so, do the sequences give us hints, why this season was so bad in USA ?
Not really. I'm not sure.
And we have a severe season in Europe too, but with other strains.
-----------------------------------------------------------------------------------------------
the first appearance of the Czech/121 strain "1.)" , 28 out of 53 in Texas
and 75 out of 82 in Canada, was in many Singapore isolates from mid 2011
first: A/Singapore/TT430/2011/07/29
--------------------------------------------------------------------------------------------------------
the first appearance of the additional HA-mutations that are in the new reassorted
strain "2.)", in 4 out of 53 recent Texas genomes
- -not seen before
---------------------------------------------------------------------------------------------------------------
the first appearance of the new 3.) strain ,12 out of 53 in Texas, was in
A/Pavia/131/2012/02/21
A/St.Petersburg/RII25/2012/02/23
A/Ekaterinburg/RII3/2012/02/29
------------------------------------------------------------------------------------------------------------------
the first appearance of that "reassorted-2011" strain, "2.)", now seen in 8 out of 53 of the
Texas-JMM-genomes and in 7 out of 82 recent HAs from Canada
was in A/Pennsylvania/02/2010/02/21 , which is now public.
http://www.ncbi.nlm.nih.gov/nuccore/KC535475
It was passaged 2010/02/21, but colleced 2010/01/07.
H3N2 was very rare in 2009/2010, but indeed there was
one H3 from week 2 in region 3:
http://www.cdc.gov/flu/weekly/region...a/whoreg3t.htm
And this sequence had been mentioned on the web already in Sept.2010.
2010 is surprisingly early for that new strain, which was one of the dominating H3 strains
the season later, and surprising is also that it first appeared in USA.
It would be interesting to see the travel history of that 74 year old male
from Pennsylvania. Was he in Asia over Christmas ? Maybe that was the reason why he
was sampled in the first place.
The next appearance was in Netherlands,April,2010.
------------------------------------------------------------------------------------------------------------------Leave a comment:
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Re: H3n2
lots of new sequences today at genbank
here are all human H3N2s since Sept.2012
you can immediately spot one reassortment at the 2 black bars on the right,
where the sequences are similar in HA but different in MP,PB2,PA
--------well, that's the old reassortment from 2011, both are still there and evolved in the meantime.
53 full genomes from Texas ("JMM") , 4 groups and 2-3 minor overlaps by exchanging(reassorting) segments
1.) 28 of them are similar to the Czech/121 virus from last season
4.) 8 of them are the 2011-reassorted virus
3.) 12 of them are a strain, that I don't know yet where it comes from, different from the other
3 strains circulating in Texas, but probably still a descendent from Egypt/Iowa/2009
2.) 4 are reassorted, getting segments 24568 from group 1.) and 137 from an ancester of group 3.)
Leave a comment:
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Re: H3n2
rooted to Egypt/Iowa:
http://www.flutrackers.com/forum/att...1&d=1361961785
(looks as if I should redefine the 2011-normal-index ?!)Leave a comment:
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Re: H3n2
H3 in Denmark had seven mutations at key antigenic sites
http://www.cidrap.umn.edu/cidrap/con...13fluscan.html
http://www.eurosurveillance.org/View...rticleId=20397
Based on HA amino acid sequence analysis, the Danish A(H3N2) viruses formed two main clades,
A and B (Figure 2).
Clade B is within the defined 3C A(H3) phylogenetic clade, where the 2012/13 A(H3N2)
vaccine component (A/Victoria/361/2011) is assigned,
but the Danish clade A should probably be assigned a new A(H3) clade. Five of the 22
Danish HA sequences included in the phylogenetic analysis, collected from week 46
(11 December 2012) to week 1 (2 January 2013), were from patients who had been
vaccinated before week 47: all five were located in clade A (Figure 2).
Altogether, seven amino acid substitutions in the HA defined the Danish clade A,
compared with egg-grown/tissue grown A/Victoria/361/2011 –
T128A, R/Q156H,V186G;R142G,N145S;N278K;S/Y219S.
Additional substitutions were Q33R, E/D190D and V347M.
The clade B viruses did not possess the substitutions at positions 128, 142 and 347.
The clade A viruses have lost the 126 N-linked glycosylation seen in A/Victoria/361/2011
and clade B (predicted by NetNGlyc 1.0 server [7]. For comparison, we included reference
HA sequences from influenza A(H3) viruses, obtained from the EpiFlu database of the
Global Initiative on Sharing Avian Influenza Data (GISAID) (Table 3).
=================================================0
DK-A = Quebec (Q49R,S61N,T64I,T144A,R158G,N161S,A214S,V239I,N294 K,N328S,V363M)
DK-B = Alberta (Q49R,S61N,T64I,N161S,A214S,V239I,N294K,N328S)
[as compared to Egypt/Iowa/2009]
while the vax-strain A/Victoria/361/2011 seems to have the additional mutations
H172RorQ,G202V,S235SorY,D190EorD
---------------------------------------------------------
6 H3-HAs from USA today at genbank
5 (3CA+2IL) are DK-B=ALB
1 (CA) is DK-A = Quebec
---------------------------------------------------------------Leave a comment:
-
Re: H3n2
82 H3N2-HAs from Canada, this season, today at genbank
(segment 4 only)
I count ~4(10) different introductions
82=7+32+11+32=7+(6+6+4+16)+(9+2)+(22+8+2)
7 are from the reassorted strain 2011-reassorted-EI, index2-2011
the other 75 are similar to CZ121 in HA, "index3-2011"
amino acids:Code:000000000000000000000000000000000000000000000000000000111111111111111111111111111111111 000111111111222222222333444444555566666667777788889999000000001111222222333334555555666 357023466889001446789224123578019900244990113625880188001134580139145699235671112347167 952802625021589077651185900622181439203035456594273537591487671315554936383716384057321 -codon-position------------------------------------ 1 2 2211 1 1 2 1 12 2 111 11 12 2 2 1 1 1 2 1 22 ---Index-------------------------------------------GCCAGAATTGGCGAGCACTCTCTTGCACAAGTGTGGAGTCGTAGAGCGTATCATACATCCGGCTAACCCGCTGCTCCGGAAAGGTCA 1 >Index/2009/Egypt/Iowa ....................................................................................... 0 0 , 0 0 1:>Index/2009/Egypt/Iowa 2 >Index/H3N3-2011-reassortedEI/2011(H3N2) ...G........A.......C.C................T....G....C.....A........G.........C....G..A.... 12 12 , 12 12 2:>Index/H3N3-2011-reassortedEI/2011(H3N2) 3 >Index/H3N2-2011-normalEI/2011(H3N2) ..............T.....................................G........A......................... 7 3 , 7 3 3:>Index/H3N2-2011-normalEI/2011(H3N2) 4 >KC526210,A/Ontario/004/2013(H3N2) ...G.G...A..A.......C.CC........A.....GT.CG.G....CC....A....T.T.G.........C.T..G..A.C.. 24 24 , 24 24 4:>KC526210,A/Ontario/004/2013(H3N2) 5 >KC535039,A/Quebec/016/2012(H3N2) ...G.G...A..A.......C.CC........A....AGT.CG.G....CC....A....T.T.G.......--------------- 38 35 , 20 20 5:>KC535039,A/Quebec/016/2012(H3N2) 6 >KC535052,A/Quebec/030/2012(H3N2) ...G.G...A..A.......C.CC........A....AGT.CG.G....CC....A....T.T.G........-------------- 38 34 , 21 20 6:>KC535052,A/Quebec/030/2012(H3N2) 7 >KC535043,A/Quebec/020/2012(H3N2) ...G.G...A..A.......C.CC........A.....GT.CG.G....CC....A....T.T.G.......--------------- 38 34 , 20 19 7:>KC535043,A/Quebec/020/2012(H3N2) 8 >KC535060,A/Quebec/039/2012(H3N2) ...G.G...A..A.......C.CC........A.....GT.CG.G....CC....A....T.T.G........-------------- 37 33 , 20 19 8:>KC535060,A/Quebec/039/2012(H3N2) 9 >KC539120,A/Alberta/054/2012(H3N2) ...G.....A..A.......C.CC........A.....GT.CG.G....CC....A....T.T.G.........CYT..G..A.C.. 26 24 , 25 24 9:>KC539120,A/Alberta/054/2012(H3N2) 10 >KC535055,A/Quebec/034/2012(H3N2) ...G.G...A..A.......C.CC........A....AGT.CG.G....CC....A....T.T.G.....----------------- 43 37 , 22 20 10:>KC535055,A/Quebec/034/2012(H3N2) 11 >KC539119,A/Alberta/053/2012(H3N2) ..T...G...AT.....T.........T..A......T.....A....G...G............C..A........A.....A..G 16 16 , 16 16 11:>KC539119,A/Alberta/053/2012(H3N2) 12 >KC539134,A/Alberta/068/2012(H3N2) ..T...G...AT.....T.........T..A..C...T.....A....G...G............C..A........A.....A..G 17 17 , 17 17 12:>KC539134,A/Alberta/068/2012(H3N2) 13 >KC535022,A/British Columbia/023/2012(H3N2) A.T...G...AT...............T..AC.....T.....A....G.C.G......T.A.C.C.TA...--------------- 37 34 , 19 19 13:>KC535022,A/British Columbia/023/2012(H3N2) 14 >KC535045,A/Quebec/022/2012(H3N2) A.T...G...AT...............T..AC.....T.....A....G.C.G......T.A.C.C.TA...--------------- 37 34 , 19 19 14:>KC535045,A/Quebec/022/2012(H3N2) 15 >KC535046,A/Quebec/023/2012(H3N2) A.T...G...AT...............T..AC.....T.....A....G.C.G......T.A.C.C.TA...--------------- 38 34 , 20 19 15:>KC535046,A/Quebec/023/2012(H3N2) 16 >KC535042,A/Quebec/019/2012(H3N2) A.T...G...AT...............T..AC.....T.....A....G...G......T.A.C.C.TA.----------------- 40 35 , 20 18 16:>KC535042,A/Quebec/019/2012(H3N2) 17 >KC526204,A/Ontario/030/2012(H3N2) ..T...G.C.AT......CT.......T.GA......T..A..A....G...G...G..T.....C..AA........AGG....AG 25 25 , 25 25 17:>KC526204,A/Ontario/030/2012(H3N2) 18 >KC526209,A/Ontario/003/2013(H3N2) ..T...G.C.AT......CT.......T.GA......T..A..A....G...G...G..T.....C..AA........AGG..---- 29 27 , 23 23 18:>KC526209,A/Ontario/003/2013(H3N2) 19 >KC526212,A/Ontario/006/2013(H3N2) ..T...G.C.AT......CT.......T.GA......T..A..A....G...G...G..T.....C..AA........AGG....AG 25 25 , 25 25 19:>KC526212,A/Ontario/006/2013(H3N2) 20 >KC535044,A/Quebec/021/2012(H3N2) ..T...G.C.AT......CT.......T.GA......T..A..A....G...G...G..T.....C..AA..--------------- 38 35 , 20 20 20:>KC535044,A/Quebec/021/2012(H3N2) 21 >KC535030,A/British Columbia/005/2013(H3N2) ..T...G.C.AT......CT.......T.GA......T..A..A....G...G...G..T.....C..AA...-------------- 38 34 , 21 20 21:>KC535030,A/British Columbia/005/2013(H3N2) 22 >KC526208,A/Ontario/002/2013(H3N2) ..T...G.C.AT......CT.......T.GA......T..A..A....G...G...G..T.....C..AA..........G.....G 23 22 , 23 22 22:>KC526208,A/Ontario/002/2013(H3N2) 23 >KC535027,A/British Columbia/002/2013(H3N2) ..T...G...AT.......T.......T.GA.A....T..A..A....G...G............C..A...--------------- 35 31 , 17 16 23:>KC535027,A/British Columbia/002/2013(H3N2) 24 >KC535049,A/Quebec/026/2012(H3N2) ..T...G...AT.......T.......T.GA...A..T..A..A....G...G.......A....C..A...--------------- 37 32 , 19 17 24:>KC535049,A/Quebec/026/2012(H3N2) 25 >KC526207,A/Ontario/001/2013(H3N2) ..T...G...AT.......T.......T.GA......T.....A....G...G............C..A..........GG.....G 21 17 , 21 17 25:>KC526207,A/Ontario/001/2013(H3N2) 26 >KC535061,A/Manitoba/001/2012(H3N2) ..T...G...AT....G..T.......T.GA......T.....A....G...G.G..........C..A.T---------------- 36 33 , 17 17 26:>KC535061,A/Manitoba/001/2012(H3N2) 27 >KC535062,A/Manitoba/002/2012(H3N2) ..T...G...AT....G..T.......T.GA......T.....A....G...G.G..........C..A.T---------------- 37 33 , 18 17 27:>KC535062,A/Manitoba/002/2012(H3N2) 28 >KC539115,A/Alberta/049/2012(H3N2) ..T...G...AT....G..T.......T.GA......T.....A....G...G.G..........C..A.T.T......GGG....G 22 22 , 22 22 28:>KC539115,A/Alberta/049/2012(H3N2) 29 >KC539116,A/Alberta/050/2012(H3N2) ..T...G...AT....G..T.......T.GA......T.....A....G...G.G..........C..A.T.T......GGG....G 22 22 , 22 22 29:>KC539116,A/Alberta/050/2012(H3N2) 30 >KC539117,A/Alberta/051/2012(H3N2) ..T...G...AT....G..T.......T.GA......T.....A....G...G.G..........C..A.T.T......GGG...-- 24 23 , 21 21 30:>KC539117,A/Alberta/051/2012(H3N2) 31 >KC539121,A/Alberta/055/2012(H3N2) ..T...G...AT....G..T.......T.GA......T.....A....G...G.G..........C..A.T.T......GGG...-- 24 23 , 21 21 31:>KC539121,A/Alberta/055/2012(H3N2) 32 >KC539122,A/Alberta/056/2012(H3N2) ..T...G...AT....G..T.......T.GA......T.....A....G...G.G..........C..A.T.T......GGG....G 22 22 , 22 22 32:>KC539122,A/Alberta/056/2012(H3N2) 33 >KC539124,A/Alberta/058/2012(H3N2) ..T...G...AT....G..T.......T.GA......T.....A....G...G.G..........C..A.T.T......GGG....G 22 22 , 22 22 33:>KC539124,A/Alberta/058/2012(H3N2) 34 >KC539127,A/Alberta/061/2012(H3N2) ..T...G...AT....G..T.......T.GA......T.....A....G...G.G..........C..A.T.T......GGG....G 22 22 , 22 22 34:>KC539127,A/Alberta/061/2012(H3N2) 35 >KC539128,A/Alberta/062/2012(H3N2) ..T...G...AT....G..T.......T.GA......T.....A....G...G.G..........C..A.T.T......GGG....G 23 22 , 22 22 35:>KC539128,A/Alberta/062/2012(H3N2) 36 >KC539130,A/Alberta/064/2012(H3N2) ..T...G...AT....G..T.......T.GA......T.....A....G...G.G..........C..A.T.T......GGG....G 22 22 , 22 22 36:>KC539130,A/Alberta/064/2012(H3N2) 37 >KC539132,A/Alberta/066/2012(H3N2) ..T...G...AT....G..T.......T.GA......T.....A....G...G.G..........C..A.T.T......GGG....G 22 22 , 22 22 37:>KC539132,A/Alberta/066/2012(H3N2) 38 >KC539133,A/Alberta/067/2012(H3N2) ..T...G...AT....G..T.......T.GA......T.....A....G...G.G..........C..A.T.T......GGG....G 22 22 , 22 22 38:>KC539133,A/Alberta/067/2012(H3N2) 39 >KC539123,A/Alberta/057/2012(H3N2) ..T...G...AT....G..T.......T.GA......T.....A....G...G.G..........C..A.T.T......GGG....G 23 22 , 23 22 39:>KC539123,A/Alberta/057/2012(H3N2) 40 >KC539131,A/Alberta/065/2012(H3N2) ..T...G...AT....G..T.......T.GA......T.....A....G...G.G..........C..A.T.T......GGG....G 23 22 , 23 22 40:>KC539131,A/Alberta/065/2012(H3N2) 41 >KC539112,A/Alberta/046/2012(H3N2) ..T...G...AT....G..T.......T.GA......T.....A....G...G.G..........C..A.T.T......GGG...-- 25 23 , 22 21 41:>KC539112,A/Alberta/046/2012(H3N2) 42 >KC535026,A/British Columbia/001/2013(H3N2) ..T...G...AT..A....T....A..T.GA......T.....A....G...G............C..A.----------------- 40 33 , 19 16 42:>KC535026,A/British Columbia/001/2013(H3N2) 43 >JX913034,A/Czech Republic/121/2012(H3N2) ..T...G...AT............A..T..A......T.....A....G...G............C..A.................G 18 14 , 18 14 43:>JX913034,A/Czech Republic/121/2012(H3N2) 44 >KC535035,A/Quebec/012/2012(H3N2) ..T...G...AT...T...T.......T.GA......T.....A.A..G..AG............C..A...--------------- 37 32 , 19 17 44:>KC535035,A/Quebec/012/2012(H3N2) 45 >KC539118,A/Alberta/052/2012(H3N2) ..T...G...AT...T...T.T.....T.GA......T.....A.A..G..AG............C..A....T......G.....G 21 21 , 21 21 45:>KC539118,A/Alberta/052/2012(H3N2) 46 >KC539135,A/Alberta/069/2012(H3N2) ..T...G...AT...T...T.T.....T.GA......T.....A.A..G..AG............C..A....T......G.....G 21 21 , 21 21 46:>KC539135,A/Alberta/069/2012(H3N2) 47 >KC526213,A/Ontario/007/2013(H3N2) ..T...G...AT...T...T.T.....T.GA......T.....A.A..G..AG............C..A....T......G.....G 22 21 , 22 21 47:>KC526213,A/Ontario/007/2013(H3N2) 48 >KC539113,A/Alberta/047/2012(H3N2) ..T...G...AT...T...T.T.....T.GA......T.....A.A..G..AGC...........C..A....T......G.....G 22 22 , 22 22 48:>KC539113,A/Alberta/047/2012(H3N2) 49 >KC539114,A/Alberta/048/2012(H3N2) ..T...G...AT...T...T.T.....T.GA......T.....A.A..G..AG............C..A....T......G.....G 22 21 , 22 21 49:>KC539114,A/Alberta/048/2012(H3N2) 50 >KC539125,A/Alberta/059/2012(H3N2) ..T...G...AT...T...T.T.....T.GA......T.....A.A..G..AG............C..A....T......G.....G 22 21 , 22 21 50:>KC539125,A/Alberta/059/2012(H3N2) 51 >KC539136,A/Alberta/070/2012(H3N2) ..T...GC..AT...T...T.......T.GA....T.T.....A.A..G..AG....C.......C..A...........G.....G 23 22 , 23 22 51:>KC539136,A/Alberta/070/2012(H3N2) 52 >KC535063,A/Manitoba/003/2012(H3N2) ..T...GC..AT...T...T.......T.GA....T.T.....A.A..G..AG....C.......C.-------------------- 49 39 , 21 19 52:>KC535063,A/Manitoba/003/2012(H3N2) 53 >KC539129,A/Alberta/063/2012(H3N2) .AT...G...AT.GAT...T.......T.GA......T.....A.AA.G..AG............CT.A...........G.....G 24 24 , 24 24 53:>KC539129,A/Alberta/063/2012(H3N2) 54 >KC539126,A/Alberta/060/2012(H3N2) .AT...G...AT.GAT...T.......T.GA......T.....A.AA.G..AG............CT.A......Y....G.....G 26 25 , 26 25 54:>KC539126,A/Alberta/060/2012(H3N2) 55 >KC526211,A/Ontario/005/2013(H3N2) ..T...G...AT.......T......GTGGA......T.....A....G...G........A...C..A..A........G.....G 20 20 , 20 20 55:>KC526211,A/Ontario/005/2013(H3N2) 56 >KC526214,A/Ontario/008/2013(H3N2) ..T...G...AT.......T......GTGGA......T.....A....G...G........A...C..A..A........G.....G 20 20 , 20 20 56:>KC526214,A/Ontario/008/2013(H3N2) 57 >KC535025,A/British Columbia/026/2012(H3N2) ..T...G...AT.......T......GTGGA......T.....A....G...G........A...C..A.----------------- 38 34 , 17 17 57:>KC535025,A/British Columbia/026/2012(H3N2) 58 >KC535036,A/Quebec/013/2012(H3N2) ..T...G...AT.......T......GTGGA......T.....A....G...G........A...C..A.----------------- 37 34 , 17 17 58:>KC535036,A/Quebec/013/2012(H3N2) 59 >KC535037,A/Quebec/014/2012(H3N2) ..T...G...AT.......T......GTGGA......T.....A....G...G........A...C..A..---------------- 36 33 , 17 17 59:>KC535037,A/Quebec/014/2012(H3N2) 60 >KC535038,A/Quebec/015/2012(H3N2) ..T...G...AT.......T......GTGGA......T.....A....G...G........A...C..A..---------------- 36 33 , 17 17 60:>KC535038,A/Quebec/015/2012(H3N2) 61 >KC535040,A/Quebec/017/2012(H3N2) ..T...G...AT.......T......GTGGA......T.....A....G...G........A...C..A.----------------- 38 34 , 17 17 61:>KC535040,A/Quebec/017/2012(H3N2) 62 >KC535041,A/Quebec/018/2012(H3N2) ..T...G...AT.......T......GTGGA......T.....A....G...G........A...C..A..---------------- 36 33 , 17 17 62:>KC535041,A/Quebec/018/2012(H3N2) 63 >KC535047,A/Quebec/024/2012(H3N2) ..T...G...AT.......T......GTGGA......T.....A....G...G........A...C..A..---------------- 36 33 , 17 17 63:>KC535047,A/Quebec/024/2012(H3N2) 64 >KC535048,A/Quebec/025/2012(H3N2) ..T...G...AT.......T......GTGGA......T.....A....G...G........A...C..A..A--------------- 36 33 , 18 18 64:>KC535048,A/Quebec/025/2012(H3N2) 65 >KC535054,A/Quebec/033/2012(H3N2) ..T...G...AT.......T......GTGGA......T.....A....G...G........A...C..A..A--------------- 36 33 , 18 18 65:>KC535054,A/Quebec/033/2012(H3N2) 66 >KC535058,A/Quebec/037/2012(H3N2) ..T...G...AT.......T......GTGGA......T.....A....G...G........A...C..A..---------------- 36 33 , 17 17 66:>KC535058,A/Quebec/037/2012(H3N2) 67 >KC526205,A/Ontario/031/2012(H3N2) ..T...G...AT.......T.....AGTGGA......T.....A....G...G........A...C..A..A........G.....G 21 21 , 21 21 67:>KC526205,A/Ontario/031/2012(H3N2) 68 >KC526206,A/Ontario/032/2012(H3N2) ..T...G...AT.......T.....AGTGGA......T.....A....G...G........A...C..A..A........G.....G 21 21 , 21 21 68:>KC526206,A/Ontario/032/2012(H3N2) 69 >KC535034,A/Quebec/011/2012(H3N2) ..T...G...AT.......T......GTGGA......T.....A....G...G........A...C..A..---------------- 37 33 , 18 17 69:>KC535034,A/Quebec/011/2012(H3N2) 70 >KC535050,A/Quebec/028/2012(H3N2) ..T...G...AT.......T......GTGGA.....GT.....A....G...G........A...C..A..A--------------- 37 34 , 19 19 70:>KC535050,A/Quebec/028/2012(H3N2) 71 >KC535059,A/Quebec/038/2012(H3N2) ..T...G...AT.......T......GTGGA.....GT.....A....G...G........A...C..A..---------------- 37 34 , 18 18 71:>KC535059,A/Quebec/038/2012(H3N2) 72 >KC535051,A/Quebec/029/2012(H3N2) ..T...G...AT.......T......GTGGA......T.....A....G...G........A...C..A..A--------------- 37 33 , 19 18 72:>KC535051,A/Quebec/029/2012(H3N2) 73 >KC535053,A/Quebec/031/2012(H3N2) ..T...G...AT.......T......GTGGA......T.....A....G...G........A...C..A..A--------------- 37 33 , 19 18 73:>KC535053,A/Quebec/031/2012(H3N2) 74 >KC535064,A/Manitoba/004/2012(H3N2) ..T...G...AT.......T......GTGGA......T.....A....G...G........A...C..A.----------------- 38 34 , 18 17 74:>KC535064,A/Manitoba/004/2012(H3N2) 75 >KC535056,A/Quebec/035/2012(H3N2) ..T...G...AT.......T......GTGGA......T.....A...AG...G........A...C..A.----------------- 40 35 , 19 18 75:>KC535056,A/Quebec/035/2012(H3N2) 76 >KC535021,A/British Columbia/022/2012(H3N2) ..T...G...AT.......T......GTGGA......T.....A....G...G............C..A..---------------- 36 32 , 17 16 76:>KC535021,A/British Columbia/022/2012(H3N2) 77 >KC535028,A/British Columbia/003/2013(H3N2) ..T.A.G...AT.......T......GTGGA......T.....A....G...GA....A......C..A..---------------- 38 35 , 19 19 77:>KC535028,A/British Columbia/003/2013(H3N2) 78 >KC535032,A/British Columbia/007/2013(H3N2) ..T.A.G...AT.......T......GTGGA......T.....A....G...GA....A.....----------------------- 57 40 , 17 17 78:>KC535032,A/British Columbia/007/2013(H3N2) 79 >KC535033,A/British Columbia/008/2013(H3N2) ..T.A.G...AT.......T......GTGGA......T.....A....G...GA....A......C..A..---------------- 38 35 , 19 19 79:>KC535033,A/British Columbia/008/2013(H3N2) 80 >KC535020,A/British Columbia/021/2012(H3N2) ..T.A.G...AT.......T......GTGGA......T.....A....G...GA....A......C..A..---------------- 39 35 , 20 19 80:>KC535020,A/British Columbia/021/2012(H3N2) 81 >KC535029,A/British Columbia/004/2013(H3N2) ..T.A.G...AT.......T......GTGGA......T.....A....G...GA....A......C..A..---------------- 39 35 , 20 19 81:>KC535029,A/British Columbia/004/2013(H3N2) 82 >KC535019,A/British Columbia/020/2012(H3N2) -.T.A.G...AT.......T......GTGGA......T.....A....G...GA....A......C..A..A........G....-- 28 24 , 23 21 82:>KC535019,A/British Columbia/020/2012(H3N2) 83 >KC535023,A/British Columbia/024/2012(H3N2) ..T.A.G...AT.......T......GTGGA......T.....A....G...GA....A......C..A..---------------- 40 35 , 21 19 83:>KC535023,A/British Columbia/024/2012(H3N2) 84 >KC535024,A/British Columbia/025/2012(H3N2) ..T.A.G...AT.......T......GTGGA......T.....A...AG...GA....A......C..A.----------------- 42 37 , 21 20 84:>KC535024,A/British Columbia/025/2012(H3N2) 85 >KC535031,A/British Columbia/006/2013(H3N2) ..T.......AT.......T......GTGGA......T.....A....G...G............C..A..---------------- 37 31 , 18 15 85:>KC535031,A/British Columbia/006/2013(H3N2) 86 >KC535057,A/Quebec/036/2012(H3N2) ..T...G...AT.......T......GTGGA..CA..T.....A....A...G............C..A..---------------- 39 34 , 20 18 86:>KC535057,A/Quebec/036/2012(H3N2) ---Index-------------------------------------------GCCAGAATTGGCGAGCACTCTCTTGCACAAGTGTGGAGTCGTAGAGCGTATCATACATCCGGCTAACCCGCTGCTCCGGAAAGGTCA -codon-position------------------------------------ 1 2 2211 1 1 2 1 12 2 111 11 12 2 2 1 1 1 2 1 22 000000000000000000000000000000000000000000000000000000111111111111111111111111111111111 000111111111222222222333444444555566666667777788889999000000001111222222333334555555666 357023466889001446789224123578019900244990113625880188001134580139145699235671112347167 952802625021589077651185900622181439203035456594273537591487671315554936383716384057321
(same positions-numeration as in the pdf from fludb above
but substract 16 to get the WHO-enumeration (in the first part) )
Code:000000000000000000000000000000000000000000000000 000000000000011111111112222222223333333334445555 124456666777800134456780113488990122677890290236 963991469038348070481378459658468708324452745681 ------------------------------------------------ LTKQVSTEDSQEIVKYNSTRNLNIASVIRANEKTANVQSKGGKIDGIR >Index/2009/Egypt/Iowa ................................................ >Index/H3N3-2011-reassortedEI/2011(H3N2) ........N......H...........V...A................ >Index/H3N2-2011-normalEI/2011(H3N2) ......A...H...R....................SM........... >KC526210,A/Ontario/004/2013(H3N2) ........N......H.........A.V...A..............T. >KC535039,A/Quebec/016/2012(H3N2) ........N......H........TA.V...A...........----- >KC535052,A/Quebec/030/2012(H3N2) ........N......H........TA.V...A...........----- >KC535043,A/Quebec/020/2012(H3N2) ...H....N......H.........A.V...A...........----- >KC535060,A/Quebec/039/2012(H3N2) ........N......H.........A.V...A.I.........----- >KC539120,A/Alberta/054/2012(H3N2) ........N......H.........A.V...A..D...........T- >KC535055,A/Quebec/034/2012(H3N2) ........N......Q........TA.V...A..........------ >KC539119,A/Alberta/053/2012(H3N2) ...R.NI.................S.I...K....S.........E.- >A/Victoria/361(vaccine-strain)/2011(H3N2) .....NI.................S.I........S............ >KC539134,A/Alberta/068/2012(H3N2) ...R.NI.................S.I...K....S.........E.. >KC535022,A/British Columbia/023/2012(H3N2) ...R.NI..............S..S.I...K....SM......----- >KC535045,A/Quebec/022/2012(H3N2) ...R.NI..............S..S.I...K....SM......----- >KC535046,A/Quebec/023/2012(H3N2) ...R.NI..............S..S.I...K....SM......----- >KC535042,A/Quebec/019/2012(H3N2) ...R.NI..............S..S.I...K....SM......----- >KC526204,A/Ontario/030/2012(H3N2) ...R.NI.............S...S.I...K....S........N... >KC526209,A/Ontario/003/2013(H3N2) ...R.NI.............S...S.I...K....S........N--- >KC526212,A/Ontario/006/2013(H3N2) ...R.NI.............S...S.I...K....S........N... >KC535044,A/Quebec/021/2012(H3N2) ...R.NI.............S...S.I...K....S.......----- >KC535030,A/British Columbia/005/2013(H3N2) ...R.NI....K........S...S.I...K....S.......----- >KC526208,A/Ontario/002/2013(H3N2) ...R.NI.............S...S.I...K....S............ >KC535027,A/British Columbia/002/2013(H3N2) ...R.NI.............S...S.I...K....S.......----- >KC535049,A/Quebec/026/2012(H3N2) ...R.NI.............S...S.I...K....S.......----- >KC526207,A/Ontario/001/2013(H3N2) ...R.NI.........S...S...S.I...K....S.......M.... >KC535061,A/Manitoba/001/2012(H3N2) ...R.NI.....V.......S...S.I...K....S.......----- >KC535062,A/Manitoba/002/2012(H3N2) ...R.NI.....V.......S...S.I...K....S.......----- >KC539115,A/Alberta/049/2012(H3N2) ...R.NI.....V.......S...S.I...K....S............ >KC539116,A/Alberta/050/2012(H3N2) ...R.NI.....V.......S...S.I...K....S............ >KC539117,A/Alberta/051/2012(H3N2) ...R.NI.....V.......S...S.I...K....S...........- >KC539121,A/Alberta/055/2012(H3N2) ...R.NI.....V.......S...S.I...K....S...........- >KC539122,A/Alberta/056/2012(H3N2) ...R.NI.....V.......S...S.I...K....S............ >KC539124,A/Alberta/058/2012(H3N2) ...R.NI.....V.......S...S.I...K....S............ >KC539127,A/Alberta/061/2012(H3N2) ...R.NI.....V.......S...S.I...K....S............ >KC539128,A/Alberta/062/2012(H3N2) ...R.NI.....V.......S...S.I...K....S...........- >KC539130,A/Alberta/064/2012(H3N2) ...R.NI.....V.......S...S.I...K....S...........- >KC539132,A/Alberta/066/2012(H3N2) ...R.NI.....V.......S...S.I...K....S...........- >KC539133,A/Alberta/067/2012(H3N2) ...R.NI.....V.......S...S.I...K....S............ >KC539123,A/Alberta/057/2012(H3N2) ...R.NI.....V.......S...S.I...K....S...........- >KC539131,A/Alberta/065/2012(H3N2) ...R.NI.....V.......S...S.I...K....S............ >KC539112,A/Alberta/046/2012(H3N2) ...R.NI.....V.......S...S.I...K....S...........- >KC535026,A/British Columbia/001/2013(H3N2) ...R.NI..........N..S...S.I...K.R..S......------ >JX913034,A/Czech Republic/121/2012(H3N2) ...R.NIK.........N....D.S.I...K....S............ >KC535035,A/Quebec/012/2012(H3N2) ..ER.NI......I......S...S.I...K....S.......----- >KC539118,A/Alberta/052/2012(H3N2) ...R.NI.............S...S.I...K....S............ >KC539135,A/Alberta/069/2012(H3N2) ...R.NI.............S...S.I...K....S...........- >KC526213,A/Ontario/007/2013(H3N2) ...R.NI.............S...S.I...K....S............ >KC539113,A/Alberta/047/2012(H3N2) ...R.NI.............S...S.I...K....S............ >KC539114,A/Alberta/048/2012(H3N2) .K.R.NI.............S...S.I...K....S............ >KC539125,A/Alberta/059/2012(H3N2) ...R.NI.............S...S.I...K....S............ >KC539136,A/Alberta/070/2012(H3N2) ...R.NI.............S...S.I...K....S...........M >KC535063,A/Manitoba/003/2012(H3N2) ...R.NI.............S...S.I...K....S.....R------ >KC539129,A/Alberta/063/2012(H3N2) I..R.NI..G..........S...S.I...K....S............ >KC539126,A/Alberta/060/2012(H3N2) I..R.NI..G..........S...S.I...K....S............ >KC526211,A/Ontario/005/2013(H3N2) ...R.NI...........AGS...S.I...K....SM........... >KC526214,A/Ontario/008/2013(H3N2) ...R.NI...........AGS...S.I...K....SM........... >KC535025,A/British Columbia/026/2012(H3N2) ...R.NI...........AGS...S.I...K....SM.....------ >KC535036,A/Quebec/013/2012(H3N2) ...R.NI...........AGS...S.I...K....SM......----- >KC535037,A/Quebec/014/2012(H3N2) ...R.NI...........AGS...S.I...K....SM......----- >KC535038,A/Quebec/015/2012(H3N2) ...R.NI...........AGS...S.I...K....SM......----- >KC535040,A/Quebec/017/2012(H3N2) ...R.NI...........AGS...S.I...K....SM.....------ >KC535041,A/Quebec/018/2012(H3N2) ...R.NI...........AGS...S.I...K....SM......----- >KC535047,A/Quebec/024/2012(H3N2) ...R.NI...........AGS...S.I...K....SM......----- >KC535048,A/Quebec/025/2012(H3N2) ...R.NI...........AGS...S.I...K....SM......----- >KC535054,A/Quebec/033/2012(H3N2) ...R.NI...........AGS...S.I...K....SM......----- >KC535058,A/Quebec/037/2012(H3N2) ...R.NI...........AGS...S.I...K....SM......----- >KC526205,A/Ontario/031/2012(H3N2) ...R.NI..........RAGS...S.I...K....SM........... >KC526206,A/Ontario/032/2012(H3N2) ...R.NI..........RAGS...S.I...K....SM........... >KC535034,A/Quebec/011/2012(H3N2) ...R.NI...........AGS...S.I..VK....SM......----- >KC535050,A/Quebec/028/2012(H3N2) ...R.NI...........AGS..VS.I...K....SM......----- >KC535059,A/Quebec/038/2012(H3N2) ...R.NI...........AGS..VS.I...K....SM......----- >KC535051,A/Quebec/029/2012(H3N2) ...R.NI...........AGS...S.I...K....SML.....----- >KC535053,A/Quebec/031/2012(H3N2) ...R.NI...........AGS...S.I...K....SM......----- >KC535064,A/Manitoba/004/2012(H3N2) ...R.NI...........AGS...S.I...K....SM.....R----- >KC535056,A/Quebec/035/2012(H3N2) ...R.NI...........AGS...S.I.K.K....SM.....------ >KC535021,A/British Columbia/022/2012(H3N2) ...R.NI...........AGS...S.I...K....S.......----- >KC535028,A/British Columbia/003/2013(H3N2) ...R.NI...........AGS...S.I...K....S.......----- >KC535032,A/British Columbia/007/2013(H3N2) ...R.NI...........AGS...S.I...K....S..---------- >KC535033,A/British Columbia/008/2013(H3N2) ...R.NI...........AGS...S.I...K....S.......----- >KC535020,A/British Columbia/021/2012(H3N2) ...R.NI...........AGS...S.I...K....S...E...----- >KC535029,A/British Columbia/004/2013(H3N2) ...R.NI...........AGS...S.I...K....S....R..----- >KC535019,A/British Columbia/020/2012(H3N2) ...RINI...........AGS...S.I...K....S...........- >KC535023,A/British Columbia/024/2012(H3N2) ...R.NI...........AGS...S.I...K....S.......----- >KC535024,A/British Columbia/025/2012(H3N2) ...R.NI...........AGS...S.I.K.K....S......------ >KC535031,A/British Columbia/006/2013(H3N2) .....NI...........AGS...S.I...K....S..F....----- >KC535057,A/Quebec/036/2012(H3N2) ...R.NI...........AGS...S.I...K....S.......----- 000000000000000000000000000000000000000000000000 000000000000011111111112222222223333333334445555 124456666777800134456780113488990122677890290236 963991469038348070481378459658468708324452745681 ------------------------------------------------ LTKQVSTEDSQEIVKYNSTRNLNIASVIRANEKTANVQSKGGKIDGIRLeave a comment:
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