Announcement
Collapse
No announcement yet.
H3n2
Collapse
X
-
Mutations increase as infections increase but also less fit mutations go extinct over time. I forget if there is some equation that describes this.
-
mutation picture , USA,2018/19 : the main strain of 1460 genomes (out of 2552 H3N2) : http://magictour.free.fr/2019-us2.GIF
(28 mutations per year , 13000 nucleotides , 24% nonsyn.
compare with SARS2 : http://magictour.free.fr/s2uk6-r2.GIF
(20 mutations per year 30000 nucleotides , 55% nonsyn , 32% in ORF1a , 80% in spike)
the main viruses in the infection-chain since 1972 : http://magictour.free.fr/i_h3n2e.GIF
Leave a comment:
-
Re: H3n2
WHO vaccine clades, 2014
NZ-overview with phylotrees etc.
(32g12f1.c2,10-37) = Egypt/Iowa+Q49R,S61N,T64I,N161S,A214S,V239I,N294K,N328S
vaccine=Tx50 : (32..)+T144N,G202V,S214P,S235F
[Switz...] = 3C.3a : (32..)+T144A,A154S,R158G,F175S,N241D,K342R
substract 16 to get WHO-locations
Code:000000000000000000000000000000000000000000000000000000 000000000000000111111111111111222222222222223333333555 011123446666777013445566777788000123344557990224467002 468944791469348808044801345679258485916287468782337351 ------------------------------------------------------ IAKLNHNQSTEDQIEKYNSTARNNLNFKNQGKIAASVNIIIRNEKQNKQVRDDV >2007/02/06,14278,AUS,A/Brisbane/10/07 .T.......................K...K.N..T...............I... >Index/USA-2007 .........................K...K.N..T...............I... >Index/Brisbane-like/2007 .........................K...K.NV.T...............I... >Index/32g12f1.c2,55-62 ..E.D..R...N....H.................T...V....A.......... >Index/H3N3-2011-reassortedEI/2011(H3N2) ...........N....H.....................V....A.......... >Index/2009/Egypt-Iowa+NA,2009// ...................................................... >Index/2009/Egypt/Iowa ...................................................... >Index/H3N2-2011-normalEI/2011(H3N2) .........A..H..R..............................S..M.... >A/Czech Republic/121/2012,2012/03/06,Czech Republic .......RNIK.......N.........D....S..I.....K...S....... >Index/32g12f1.c2,38-41 .......RNI........N....S.........S..I.....K.R.S....... >Index/32g12f1.c2,10-37 .......RNI.............S.........S..I.....K...S....... >KM064114,A/Texas/17/2014,2014/05/05,USA,H3N2,Human,4 .....Y.RNI.........A.G.S.........S..I.....K...S..K.... >KM852940,A/Utah/09/2014,2014/05/07,USA,H3N2,Human,4 .......RNI.........A.G.S.........S..I...M.K...S.EK.... >KM852915,A/Kansas/06/2014,2014/05/05,USA,H3N2,Human,4 ......DRNI.......D.A.G.SS.......TS..I.....K...S..M.... >KM852967,A/Minnesota/14/2014,2014/07/10,USA,H3N2,Human,4 .......RNI.........ASG.S..-......S..ID.V..K...SR...... >KM853009,A/New Mexico/16/2014,2014/05/15,USA,H3N2,Human,4 .......RNI..-......ASG.S..S......S..ID.V..K...SR.....I >KM852961,A/Alaska/29/2014,2014/07/18,USA,H3N2,Human,4 T......RNI.........DSG.S..S......S..ID....K...SR...... >KM852972,A/Nevada/11/2014,2014/05/28,USA,H3N2,Human,4 .......RNI...V.....ASG.S..S......S..ID....K...SR...... >KM852975,A/Alaska/27/2014,2014/05/13,USA,H3N2,Human,4 .......RNI.........ASG.S..S......S..ID....K...SR...... >KM852977,A/Alaska/26/2014,2014/05/22,USA,H3N2,Human,4 .......RNI.........ASG.S..S......S..ID....K...SR...... >KM852971,A/Wisconsin/11/2014,2014/05/22,USA,H3N2,Human,4 ...I...RNI......H..ASG.S..S......S..ID....K...S....... >KM852976,A/Iowa/09/2014,2014/05/23,USA,H3N2,Human,4 ...I...RNI...........GSS.-Y-.....S..ID....K..HS.....N. >KM852877,A/Alaska/34/2014,2014/07/05,USA,H3N2,Human,4 ...I...RNI............SS..YT.....S..ID....K..HS.....N. >KM853006,A/Iowa/08/2014,2014/05/08,USA,H3N2,Human,4 ...I...RNI......H.....SS..YT.....S..ID....K..HS.....N. >KM852959,A/Washington/12/2014,2014/05/02,USA,H3N2,Human,4 ...I...RNI............SS..YT.....S..ID....K..HS.....N. >KM852880,A/Texas/36/2014,2014/06/13,USA,H3N2,Human,4 ...I...RNI............SS..YT.....S..ID....K..HS.....N. >KM852939,A/Iowa/07/2014,2014/05/05,USA,H3N2,Human,4 ...I...RNI............SS..YT.....S..ID..M.K..HS.....N. >KM853004,A/Wisconsin/14/2014,2014/06/29,USA,H3N2,Human,4 ...I...RNI............SS..YT.....S..ID....K..HS.....N. >KM853010,A/Washington/13/2014,2014/05/07,USA,H3N2,Human,4 ...I...RNI............SS..YT.....S..ID....K..HS.....N. >KM853007,A/Utah/08/2014,2014/05/01,USA,H3N2,Human,4 ...I...RNI.N..........SS...T.....S..ID....K..HS.....N. >KM852892,A/Utah/10/2014,2014/05/27,USA,H3N2,Human,4 ...I...RNI.N..........SS.........S..ID....K..HS.....N. >Index/32g12f1.c2,42-53 ......................DS..........S.I....Q.........N.. >Index/Perth-like/2009 ..............K.......K...........T................... >A/Texas/50/2012,2012//,USA,H3N2,Human .......RNI.........N..........V..P.FI.....K...S....... 000000000000000000000000000000000000000000000000000000 000000000000000111111111111111222222222222223333333555 011123446666777013445566777788000123344557990224467002 468944791469348808044801345679258485916287468782337351 ------------------------------------------------------ IAKLNHNQSTEDQIEKYNSTARNNLNFKNQGKIAASVNIIIRNEKQNKQVRDDV
Leave a comment:
-
Re: H3n2
new H3N2 genomes from 2012/3=2012f at genbank
i.e. from Boston, Santa Clara
391 genomes now
some of the Helsinki sequences were removed, see here:
here the codes for those who google for it
(google last cached this thread on 2014/03/31 )
Code:AB796432 AB796433 CY130183 CY130191 CY130192 CY130193 CY130194 CY130195 CY130196 CY130197 CY130198 CY130199 CY130200 CY131965 CY131966 CY131967 CY134459 CY134460 CY134461 CY134462 CY134463 CY134464 CY134635 CY134636 CY134637 CY134638 CY134639 CY134640 CY134641 CY134642 CY134643 CY134644 CY134645 CY134646 CY134647 CY134648 CY134649 CY134650 CY134651 CY134652 CY134653 CY134654 CY134655 CY134656 CY134657 CY134658 CY134659 CY134660 CY134661 CY134662 CY134663 CY134664 CY134665 CY134666 CY134667 CY134668 CY134669 CY134670 CY134671 CY134672 CY134673 CY134674 CY134675 CY134676 CY134677 CY134678 CY134679 CY134680 CY134681 CY134682 CY134683 CY134684 CY134685 CY134686 CY134687 CY134688 CY134689 CY134690 CY134691 CY134692 CY134693 CY134694 CY134695 CY134696 CY134697 CY134698 CY134699 CY134700 CY134701 CY134702 CY134703 CY134704 CY134705 CY134706 CY134707 CY134708 CY134709 CY134710 CY134711 CY134712 CY134713 CY134714 CY134715 CY134716 CY134717 CY134718 CY134719 CY134720 CY134721 CY134722 CY134723 CY134724 CY134725 CY134726 CY134727 CY134728 CY134729 CY134730 CY134731 CY134732 CY134733 CY134734 CY134735 CY134736 CY134737 CY134738 CY134739 CY134740 CY134741 CY134742 CY134743 CY134744 CY134745 CY134746 CY134747 CY134748 CY134749 CY134750 CY134751 CY134752 CY134753 CY134754 CY134755 CY134756 CY134757 CY134758 CY134759 CY134760 CY134761 CY134762 CY134763 CY134764 CY134765 CY134766 CY134767 CY134768 CY134769 CY134770 CY134771 CY134772 CY134773 CY134774 CY134775 CY134776 CY134777 CY134778 CY134779 CY134780 CY134781 CY134782 CY134783 CY134784 CY134785 CY134786 CY134787 CY134788 CY134789 CY134790 CY134791 CY134792 CY134793 CY134794 CY134795 CY134796 CY134797 CY134798 CY134799 CY134800 CY134801 CY134802 CY134803 CY134804 CY134805 CY134806 CY134807 CY134808 CY134809 CY134810 CY134811 CY134812 CY134813 CY134814 CY134815 CY134816 CY134817 CY134818 CY134819 CY134820 CY134821 CY134822 CY134823 CY134824 CY134825 CY134826 CY134827 CY134828 CY134829 CY134830 CY134831 CY134832 CY134833 CY134834 CY134835 CY134836 CY134837 CY134838 CY134839 CY134840 CY134841 CY134842 CY134843 CY134844 CY134845 CY134846 CY134847 CY134848 CY134849 CY134850 CY134851 CY134852 CY134853 CY134854 CY134855 CY134856 CY134857 CY134858 CY134859 CY134860 CY134861 CY134862 CY134863 CY134864 CY134865 CY134866 CY134867 CY134868 CY134869 CY134870 CY134871 CY134872 CY134873 CY134874 CY134875 CY134876 CY134877 CY134878 CY134879 CY134880 CY134881 CY134882 CY134883 CY134884 CY134885 CY134886 CY134887 CY134888 CY134889 CY134890 CY134891 CY134892 CY134893 CY134894 CY134895 CY134896 CY134897 CY134898 CY134899 CY134900 CY134901 CY134902 CY134903 CY134904 CY134905 CY134906 CY134907 CY134908 CY134909 CY134910 CY134911 CY134912 CY134913 CY134914 CY134915 CY134916 CY134917 CY134918 CY134919 CY134920 CY134921 CY134922 CY134923 CY134924 CY134925 CY134926 CY134927 CY134928 CY134929 CY134930 CY134931 CY134932 CY134933 CY134934 CY134935 CY134936 CY134937 CY134938 CY134939 CY134940 CY134941 CY134942 CY134943 CY134944 CY134945 CY134946 CY134947 CY134948 CY134949 CY134950 CY134951 CY134952 CY134953 CY134954 CY134955 CY134956 CY134957 CY134958 CY134959 CY134960 CY134961 CY134962 CY134963 CY134964 CY134965 CY134966 CY134967 CY134968 CY134969 CY134970 CY134971 CY134972 CY134973 CY134974 CY134975 CY134976 CY134977 CY134978 CY134979 CY134980 CY134981 CY134982 CY134983 CY134984 CY134985 CY134986 CY134987 CY134988 CY134989 CY134990 CY134991 CY134992 CY134993 CY134994 CY134995 CY134996 CY134997 CY134998 CY134999 CY135000 CY135001 CY135002 CY135003 CY135004 CY135005 CY135006 CY135007 CY135008 CY135009 CY135010 CY135011 CY135012 CY135013 CY135014 CY135015 CY135016 CY135017 CY135018 CY135019 CY135020 CY135021 CY135022 CY135023 CY135024 CY135025 CY135026 CY135027 CY135028 CY135029 CY135030 CY135031 CY135032 CY135033 CY135034 CY135035 CY135036 CY135037 CY135038 CY135039 CY135040 CY135041 CY135042 CY135043 CY135044 CY135045 CY135046 CY135047 CY135048 CY135049 CY135050 CY135051 CY135052 CY135053 CY135054 CY135055 CY135056 CY135057 CY135058 CY135059 CY135060 CY135061 CY135062 CY135063 CY135064 CY135065 CY135066 CY135067 CY135068 CY135069 CY135070 CY135071 CY135072 CY135073 CY135074 CY135075 CY135076 CY135077 CY135078 CY135079 CY135080 CY135081 CY135082 CY135083 CY135084 CY135085 CY135086 CY135087 CY135088 CY135089 CY135090 CY135091 CY135092 CY135093 CY135094 CY135095 CY135096 CY135097 CY135098 CY135099 CY135100 CY135101 CY135102 CY135103 CY135104 CY135105 CY135106 CY135107 CY135124 CY135125 CY135126 CY135127 CY135128 CY135129 CY135130 CY135131 CY135132 CY135133 CY135134 CY135135 CY135136 CY135137 CY135138 CY135139 CY135140 CY135141 CY135142 CY135143 CY135144 CY135145 CY135146 CY135147 CY135148 CY135149 CY135150 CY135151 CY135152 CY135153 CY135154 CY135155 CY135156 CY135157 CY135158 CY135159 CY135160 CY135161 CY135162 CY135163 CY135164 CY135165 CY135166 CY135167 CY135168 CY135169 CY135170 CY135171 CY139611 CY139612 CY139613 CY139614 CY139615 CY139616 CY139617 CY139618 CY139619 CY139620 CY139621 CY139622 CY139623 CY139624 CY139625 CY139626 CY139627 CY141176 CY141177 CY141178 CY141179 CY141180 CY141181 CY141182 CY141183 CY141184 CY141185 CY141186 CY141187 CY141188 CY141189 CY141190 CY141191 CY141192 CY141193 CY141194 CY141195 CY141196 CY141197 CY141199 CY141200 CY141201 CY141202 CY141203 CY141204 CY141205 CY141209 CY141210 CY141211 CY141212 CY141213 CY141214 CY141215 CY141216 CY141218 CY141219 CY141220 CY141221 CY141222 CY141223 CY141224 CY141225 CY141226 CY141227 CY141228 CY141229 CY141230 CY141231 CY141232 CY141234 CY141235 CY141239 CY141240 CY141241 CY141242 CY141243 CY141244 CY141245 CY141246 CY141247 CY141248 CY141249 CY141250 CY141251 CY141252 CY141253 CY141254 CY141255 CY141256 CY141257 CY141259 CY141260 CY141261 CY141262 CY141263 CY141264 CY141265 CY141266 CY141267 CY141268 CY141269 CY141270 CY141271 CY141274 CY141276 CY141277 CY141278 CY141279 CY141280 CY141281 CY141282 CY147290 CY147291 CY147292 CY147293 CY147294 CY147295 CY147296 CY147297 CY147298 CY147299 CY147300 CY147301 CY147302 CY147303 CY147304 CY147305 CY147306 CY147307 CY147308 CY147309 CY147310 CY147311 CY148275 CY148276 CY148277 CY148278 CY148279 CY148280 CY148281 CY148282 CY148292 CY148293 CY148294 CY148295 CY148296 CY148297 CY148298 CY148299 CY148300 CY148301 CY148302 CY148303 CY148304 CY148305 CY148306 CY148307 CY148308 CY148309 CY148310 CY148311 CY148312 CY148313 CY148314 CY148315 CY148324 CY148325 CY148326 CY148327 CY148328 CY148329 CY148330 CY148331 CY148332 CY148333 CY148334 CY148335 CY148336 CY148337 CY148338 CY148339 CY148340 CY148341 CY148342 CY148343 CY148344 CY148345 CY148346 CY148347 CY148348 CY148349 CY148350 CY148351 CY148352 CY148353 CY148354 CY148355 CY148356 CY148357 CY148358 CY148359 CY148360 CY148361 CY148362 CY148363 CY148364 CY148365 CY148366 CY148367 CY148368 CY148369 CY148370 CY148371 CY148372 CY148373 CY148374 CY148375 CY148376 CY148377 CY148378 CY148379 CY148380 CY148381 CY148382 CY148383 CY148384 CY148385 CY148386 CY148387 CY148388 CY148389 CY148390 CY148391 CY148392 CY148393 CY148394 CY148395 CY148396 CY148397 CY148398 CY148399 CY148400 CY148401 CY148402 CY148403 CY148404 CY148405 CY148406 CY148407 CY148408 CY148409 CY148410 CY148411 CY148412 CY148413 CY148414 CY148415 CY148416 CY148417 CY148418 CY148419 CY148420 CY148421 CY148422 CY148423 CY148424 CY148425 CY148426 CY148427 CY148428 CY148429 CY148430 CY148431 CY148432 CY148433 CY148434 CY148435 CY148436 CY148437 CY148438 CY148439 CY148440 CY148441 CY148442 CY148443 CY148444 CY148445 CY148446 CY148447 CY148448 CY148449 CY148450 CY148451 CY148452 CY148453 CY148454 CY148455 CY148456 CY148457 CY148458 CY148459 CY148460 CY148461 CY148462 CY148463 CY148464 CY148465 CY148466 CY148467 CY148468 CY148469 CY148470 CY148471 CY148472 CY148473 CY148474 CY148475 CY148476 CY148477 CY148478 CY148479 CY148480 CY148481 CY148482 CY148483 CY148484 CY148485 CY148486 CY148487 CY148488 CY148489 CY148490 CY148491 CY148492 CY148493 CY148494 CY148495 CY148496 CY148497 CY148498 CY148499 CY148500 CY148501 CY148502 CY148503 CY148504 CY148505 CY148506 CY148507 CY148508 CY148509 CY148510 CY148511 CY148512 CY148513 CY148514 CY148515 CY148516 CY148517 CY148518 CY148519 CY148520 CY148521 CY148522 CY148523 CY148524 CY148525 CY148526 CY148527 CY148528 CY148529 CY148530 CY148531 CY148532 CY148533 CY148534 CY148535 CY148536 CY148537 CY148538 CY148539 CY148540 CY148541 CY148542 CY148543 CY148544 CY148545 CY148546 CY148547 CY148548 CY148549 CY148550 CY148551 CY148552 CY148553 CY148554 CY148555 CY148556 CY148557 CY148558 CY148559 CY148560 CY148561 CY148562 CY148563 CY148564 CY148565 CY148566 CY148567 CY148568 CY148569 CY148570 CY148571 CY148572 CY148573 CY148574 CY148575 CY148576 CY148577 CY148578 CY148579 CY148580 CY148581 CY148582 CY148583 CY148584 CY148585 CY148586 CY148587 CY148588 CY148589 CY148590 CY148591 CY148592 CY148593 CY148594 CY148595 CY148596 CY148597 CY148598 CY148599 CY148600 CY148601 CY148602 CY148603 CY148604 CY148605 CY148606 CY148607 CY148608 CY148609 CY148610 CY148611 CY148612 CY148613 CY148614 CY148615 CY148616 CY148617 CY148618 CY148619 CY148620 CY148621 CY148622 CY148623 CY148624 CY148625 CY148626 CY148627 CY148628 CY148629 CY148630 CY148631 CY148632 CY148633 CY148634 CY148635 CY148636 CY148637 CY148638 CY148639 CY148640 CY148641 CY148642 CY148643 CY148644 CY148645 CY148646 CY148647 CY148648 CY148649 CY148650 CY148651 CY148652 CY148653 CY148654 CY148655 CY148656 CY148657 CY148658 CY148659 CY148660 CY148661 CY148662 CY148663 CY148664 CY148665 CY148666 CY148667 CY148668 CY148669 CY148670 CY148671 CY148672 CY148673 CY148674 CY148675 CY148676 CY148677 CY148678 CY148679 CY148680 CY148681 CY148682 CY148683 CY148684 CY148685 CY148686 CY148687 CY148688 CY148689 CY148690 CY148691 CY148692 CY148693 CY148694 CY148695 CY148696 CY148697 CY148698 CY148699 CY148700 CY148701 CY148702 CY148703 CY148704 CY148705 CY148706 CY148707 CY148708 CY148709 CY148710 CY148711 CY148712 CY148713 CY148714 CY148715 CY148716 CY148717 CY148718 CY148719 CY148720 CY148721 CY148722 CY148723 CY148724 CY148725 CY148726 CY148727 CY148728 CY148729 CY148730 CY148731 CY148732 CY148733 CY148734 CY148735 CY148736 CY148737 CY148738 CY148739 CY148740 CY148741 CY148742 CY148743 CY148744 CY148745 CY148746 CY148747 CY148748 CY148749 CY148750 CY148751 CY148752 CY148753 CY148754 CY148755 CY148756 CY148757 CY148758 CY148759 CY148760 CY148761 CY148762 CY148763 CY148764 CY148765 CY148766 CY148767 CY148768 CY148769 CY148770 CY148771 CY148772 CY148773 CY148774 CY148775 CY148776 CY148777 CY148778 CY148779 CY148780 CY148781 CY148782 CY148783 CY148784 CY148785 CY148786 CY148787 CY148796 CY148797 CY148798 CY148799 CY148800 CY148801 CY148802 CY148803 CY148804 CY148805 CY148806 CY148807 CY148808 CY148809 CY148810 CY148811 CY148812 CY148813 CY148814 CY148815 CY148816 CY148817 CY148818 CY148819 CY148820 CY148821 CY148822 CY148823 CY148824 CY148825 CY148826 CY148827 CY148828 CY148829 CY148830 CY148831 CY148832 CY148833 CY148834 CY148835 CY148836 CY148837 CY148838 CY148839 CY148840 CY148841 CY148842 CY148843 CY148844 CY148845 CY148846 CY148847 CY148848 CY148849 CY148850 CY148851 CY148852 CY148853 CY148854 CY148855 CY148856 CY148857 CY148858 CY148859 CY148860 CY148861 CY148862 CY148863 CY148864 CY148865 CY148866 CY148867 CY148868 CY148869 CY148870 CY148871 CY148872 CY148873 CY148874 CY148875 CY148876 CY148877 CY148878 CY148879 CY148880 CY148881 CY148882 CY148883 CY148884 CY148885 CY148886 CY148887 CY148888 CY148889 CY148890 CY148891 CY148892 CY148893 CY148894 CY148895 CY148896 CY148897 CY148898 CY148899 CY148900 CY148901 CY148902 CY148903 CY148904 CY148905 CY148906 CY148907 CY148908 CY148909 CY148910 CY148911 CY148912 CY148913 CY148914 CY148915 CY148916 CY148917 CY148918 CY148919 CY148920 CY148921 CY148922 CY148923 CY148924 CY148925 CY148926 CY148927 CY148928 CY148929 CY148930 CY148931 CY148932 CY148933 CY148934 CY148935 CY148936 CY148937 CY148938 CY148939 CY148940 CY148941 CY148942 CY148943 CY148944 CY148945 CY148946 CY148947 CY148948 CY148949 CY148950 CY148951 CY148952 CY148953 CY148954 CY148955 CY148956 CY148957 CY148958 CY148959 CY148960 CY148961 CY148962 CY148963 CY148964 CY148965 CY148966 CY148967 CY148968 CY148969 CY148970 CY148971 CY148972 CY148973 CY148974 CY148975 CY148976 CY148977 CY148978 CY148979 CY148980 CY148981 CY148982 CY148983 CY148984 CY148985 CY148986 CY148987 CY148988 CY148989 CY148990 CY148991 CY148992 CY148993 CY148994 CY148995 CY148996 CY148997 CY148998 CY148999 CY149000 CY149001 CY149002 CY149003 CY149004 CY149005 CY149006 CY149007 CY149008 CY149009 CY149010 CY149011 CY149012 CY149013 CY149014 CY149015 CY149016 CY149017 CY149018 CY149019 CY149020 CY149021 CY149022 CY149023 CY149024 CY149025 CY149026 CY149027 CY149028 CY149029 CY149030 CY149031 CY149032 CY149033 CY149034 CY149035 CY149036 CY149037 CY149038 CY149039 CY149040 CY149041 CY149042 CY149043 CY149044 CY149045 CY149046 CY149047 CY149048 CY149049 CY149050 CY149051 CY149052 CY149053 CY149054 CY149055 CY149056 CY149057 CY149058 CY149059 CY149060 CY149061 CY149062 CY149063 CY149064 CY149065 CY149066 CY149067 CY149068 CY149069 CY149070 CY149071 CY149072 CY149073 CY149074 CY149075 CY149076 CY149077 CY149078 CY149079 CY149080 CY149081 CY149082 CY149083 CY149084 CY149085 CY149086 CY149087 CY149088 CY149089 CY149090 CY149091 CY149092 CY149093 CY149094 CY149095 CY149096 CY149097 CY149098 CY149099 CY149100 CY149101 CY149102 CY149103 CY149104 CY149105 CY149106 CY149107 CY149108 CY149109 CY149110 CY149111 CY149112 CY149113 CY149114 CY149115 CY149116 CY149117 CY149118 CY149119 CY149120 CY149121 CY149122 CY149123 CY149124 CY149125 CY149126 CY149127 CY149128 CY149129 CY149130 CY149131 CY149132 CY149133 CY149134 CY149135 CY149136 CY149137 CY149138 CY149139 CY149140 CY149141 CY149142 CY149143 CY149144 CY149145 CY149146 CY149147 CY149148 CY149149 CY149150 CY149151 CY149152 CY149153 CY149154 CY149155 CY149156 CY149157 CY149158 CY149159 CY149160 CY149161 CY149162 CY149163 CY149164 CY149165 CY149166 CY149167 CY149168 CY149169 CY149170 CY149171 CY149172 CY149173 CY149174 CY149175 CY149176 CY149177 CY149178 CY149179 CY149180 CY149181 CY149182 CY149183 CY149184 CY149185 CY149186 CY149187 CY149188 CY149189 CY149190 CY149191 CY149192 CY149193 CY149194 CY149195 CY149196 CY149197 CY149198 CY149199 CY149200 CY149201 CY149202 CY149203 CY149204 CY149205 CY149206 CY149207 CY149208 CY149209 CY149210 CY149211 CY149212 CY149213 CY149214 CY149215 CY149216 CY149217 CY149218 CY149219 CY149220 CY149221 CY149222 CY149223 CY149224 CY149225 CY149226 CY149227 CY149228 CY149229 CY149230 CY149231 CY149232 CY149233 CY149234 CY149235 CY149236 CY149237 CY149238 CY149239 CY149240 CY149241 CY149242 CY149243 CY149244 CY149245 CY149246 CY149247 CY149248 CY149249 CY149250 CY149251 CY149252 CY149253 CY149254 CY149255 CY149256 CY149257 CY149258 CY149259 CY149260 CY149261 CY149262 CY149263 CY149264 CY149265 CY149266 CY149267 CY149268 CY149269 CY149270 CY149271 CY149272 CY149273 CY149274 CY149275 CY149276 CY149277 CY149278 CY149279 CY149280 CY149281 CY149282 CY149283 CY149284 CY149285 CY149286 CY149287 CY149288 CY149289 CY149290 CY149291 CY149292 CY149293 CY149294 CY149295 CY149296 CY149297 CY149298 CY149299 CY149300 CY149301 CY149302 CY149303 CY149304 CY149305 CY149306 CY149307 CY149308 CY149309 CY149310 CY149311 CY149312 CY149313 CY149314 CY149315 CY149316 CY149317 CY149318 CY149319 CY149320 CY149321 CY149322 CY149323 CY149324 CY149325 CY149326 CY149327 CY149328 CY149329 CY149330 CY149331 CY160528 CY160529 CY160530 CY160531 CY160532 CY160533 CY160534 CY160535 CY163168 CY163169 CY163170 CY163171 CY163172 CY163173 CY163174 CY163175 CY163422 CY163423 CY163424 CY163425 CY163426 CY163427 CY163428 CY163429 CY167788 CY167789 CY167790 CY167791 CY167792 CY167793 CY167794 CY167795 CY167796 CY167797 CY167798 CY167799 CY167800 CY167801 CY167802 CY167803 CY167852 CY167853 CY167854 CY167855 CY167856 CY167857 CY167858 CY167859 CY167860 CY167861 CY167862 CY167863 CY167864 CY167865 CY167866 CY167867 CY167868 CY167869 CY167870 CY167871 CY167872 CY167873 CY167874 CY167875 CY167887 CY167888 CY167889 CY167890 CY167891 CY167892 CY167893 CY167894 CY167895 CY167896 CY167897 CY167898 CY167899 CY167900 CY167901 CY167902 CY167903 CY167904 CY167905 CY167906 CY167907 CY167908 CY167909 CY167910 CY167911 CY167912 CY167913 CY167914 CY167915 CY167916 CY167917 CY167918 CY167919 CY167920 CY167921 CY167922 CY167923 CY167924 CY167925 CY167926 CY167927 CY167928 CY167929 CY167930 CY167931 CY167932 CY167933 CY167934 CY167935 CY167936 CY167937 CY167938 CY167939 CY167940 CY167941 CY167942 CY167943 CY167944 CY167945 CY167946 CY167947 CY167948 CY167949 CY167950 CY167951 CY167952 CY167953 CY167954 CY167955 CY167956 CY167957 CY167958 CY167959 CY167960 CY167961 CY167962 CY167963 CY167964 CY167965 CY167966 CY167967 CY167968 CY167969 CY167970 CY167971 CY167972 CY167973 CY167974 CY167975 CY167976 CY167977 CY167978 CY167979 CY167980 CY167981 CY167982 CY167983 CY167984 CY167985 CY167986 CY167987 CY167988 CY167989 CY167990 CY167991 CY167992 CY167993 CY167994 CY167995 CY167996 CY167997 CY167998 CY167999 CY168000 CY168001 CY168002 CY168003 CY168004 CY168005 CY168006 CY168007 CY168008 CY168009 CY168010 CY168011 CY168012 CY168013 CY168014 CY168015 CY168016 CY168017 CY168018 CY168019 CY168020 CY168021 CY168022 CY168023 CY168024 CY168025 CY168026 CY168027 CY168028 CY168029 CY168030 CY168031 CY168032 CY168033 CY168034 CY168035 CY168036 CY168037 CY168038 CY168039 CY168040 CY168041 CY168042 CY168043 CY168044 CY168045 CY168046 CY168047 CY168048 CY168049 CY168050 CY168051 CY168052 CY168053 CY168054 CY168055 CY168056 CY168057 CY168058 CY168059 CY168060 CY168061 CY168062 CY168063 CY168064 CY168065 CY168066 CY168067 CY168068 CY168069 CY168070 CY168071 CY168072 CY168073 CY168074 CY168075 CY168076 CY168077 CY168078 CY168079 CY168080 CY168081 CY168082 CY168083 CY168084 CY168085 CY168086 CY168087 CY168088 CY168089 CY168090 CY168091 CY168092 CY168093 CY168094 CY168103 CY168104 CY168105 CY168106 CY168107 CY168108 CY168109 CY168110 CY168111 CY168112 CY168113 CY168114 CY168115 CY168116 CY168117 CY168118 CY168119 CY168120 CY168121 CY168122 CY168123 CY168124 CY168125 CY168126 CY168127 CY168128 CY168129 CY168130 CY168131 CY168132 CY168133 CY168134 CY168135 CY168136 CY168137 CY168138 CY168139 CY168140 CY168141 CY168142 CY168143 CY168144 CY168145 CY168146 CY168147 CY168148 CY168149 CY168150 CY168151 CY168152 CY168153 CY168154 CY168155 CY168156 CY168157 CY168158 CY168159 CY168160 CY168161 CY168162 CY168163 CY168164 CY168165 CY168166 CY168167 CY168168 CY168169 CY168170 CY168171 CY168172 CY168173 CY168174 CY168175 CY168176 CY168177 CY168178 CY168179 CY168180 CY168181 CY168182 CY168183 CY168184 CY168185 CY168186 CY168187 CY168188 CY168189 CY168190 CY168191 CY168192 CY168193 CY168194 CY168195 CY168196 CY168197 CY168198 CY168199 CY168200 CY168201 CY168202 CY168203 CY168204 CY168205 CY168206 CY168207 CY168208 CY168209 CY168210 CY168211 CY168212 CY168213 CY168214 CY168215 CY168216 CY168217 CY168218 CY168219 CY168220 CY168221 CY168222 CY168223 CY168224 CY168225 CY168226 CY168227 CY168228 CY168229 CY168230 CY168231 CY168232 CY168233 CY168234 CY168235 CY168236 CY168237 CY168238 CY168239 CY168240 CY168241 CY168242 CY168243 CY168244 CY168245 CY168246 CY168247 CY168248 CY168249 CY168250 CY168251 CY168252 CY168253 CY168254 CY168255 CY168256 CY168257 CY168258 CY168259 CY168260 CY168261 CY168262 CY168263 CY168264 CY168265 CY168266 CY168267 CY168268 CY168269 CY168270 CY168271 CY168272 CY168273 CY168274 CY168275 CY168276 CY168277 CY168278 CY168279 CY168280 CY168281 CY168282 CY168283 CY168284 CY168285 CY168286 CY168287 CY168288 CY168289 CY168290 CY168291 CY168292 CY168293 CY168294 CY168295 CY168296 CY168297 CY168298 CY168299 CY168300 CY168301 CY168302 CY168303 CY168304 CY168305 CY168306 CY168307 CY168308 CY168309 CY168310 CY168311 CY168312 CY168313 CY168314 CY168315 CY168316 CY168317 CY168318 CY168319 CY168320 CY168321 CY168322 CY168323 CY168324 CY168325 CY168326 CY168327 CY168328 CY168329 CY168330 CY168331 CY168332 CY168333 CY168334 CY168335 CY168336 CY168337 CY168338 CY168339 CY168340 CY168341 CY168342 CY168343 CY168344 CY168345 CY168346 CY168347 CY168348 CY168349 CY168350 CY168351 CY168352 CY168353 CY168354 CY168355 CY168356 CY168357 CY168358 CY168359 CY168360 CY168361 CY168362 CY168363 CY168364 CY168365 CY168366 CY168367 CY168368 CY168369 CY168370 CY168371 CY168372 CY168373 CY168374 CY168375 CY168376 CY168377 CY168378 CY168379 CY168380 CY168381 CY168382 CY168383 CY168384 CY168385 CY168386 CY168387 CY168388 CY168389 CY168390 CY168391 CY168392 CY168393 CY168394 CY168395 CY168396 CY168397 CY168398 CY168399 CY168400 CY168401 CY168402 CY168403 CY168404 CY168405 CY168406 CY168407 CY168408 CY168409 CY168410 CY168411 CY168412 CY168413 CY168414 CY168415 CY168416 CY168417 CY168418 CY168419 CY168420 CY168421 CY168422 CY168431 CY168432 CY168433 CY168434 CY168435 CY168436 CY168437 CY168438 CY168439 CY168440 CY168441 CY168442 CY168443 CY168444 CY168445 CY168446 CY168447 CY168448 CY168449 CY168450 CY168451 CY168452 CY168453 CY168454 CY168455 CY168456 CY168457 CY168458 CY168459 CY168460 CY168461 CY168462 CY168463 CY168464 CY168465 CY168466 CY168467 CY168468 CY168469 CY168470 CY168471 CY168472 CY168473 CY168474 CY168475 CY168476 CY168477 CY168478 CY168479 CY168480 CY168481 CY168482 CY168483 CY168484 CY168485 CY168486 CY168487 CY168488 CY168489 CY168490 CY168491 CY168492 CY168493 CY168494 CY168495 CY168496 CY168497 CY168498 CY168499 CY168500 CY168501 CY168502 CY168503 CY168504 CY168505 CY168506 CY168507 CY168508 CY168509 CY168510 CY168511 CY168512 CY168513 CY168514 CY168515 CY168516 CY168517 CY168518 CY168519 CY168520 CY168521 CY168522 CY168523 CY168524 CY168525 CY168526 CY168743 CY168744 CY168745 CY168746 CY168747 CY168748 CY168749 CY168750 CY168839 CY168840 CY168841 CY168842 CY168843 CY168844 CY168845 CY168846 CY170103 CY170104 CY170105 CY170106 CY170107 CY170108 CY170109 CY170110 CY170111 CY170112 CY170113 CY170114 CY170115 CY170116 CY170117 CY170118 CY170119 CY170120 CY170121 CY170122 CY170123 CY170124 CY170125 CY170126 CY170127 CY170128 CY170129 CY170130 CY170131 CY170132 CY170133 CY170134 CY170135 CY170136 CY170137 CY170138 CY170139 CY170140 CY170141 CY170142 CY170143 CY170144 CY170145 CY170146 CY170147 CY170148 CY170149 CY170150 CY170151 CY170152 CY170153 CY170154 CY170155 CY170156 CY170157 CY170158 CY170159 CY170160 CY170161 CY170162 CY170163 CY170164 CY170165 CY170166 CY170167 CY170168 CY170169 CY170170 CY170171 CY170172 CY170173 CY170174 CY170175 CY170176 CY170177 CY170178 CY170179 CY170180 CY170181 CY170182 CY170183 CY170184 CY170185 CY170186 CY170187 CY170188 CY170189 CY170190 CY170191 CY170192 CY170193 CY170194 CY170195 CY170196 CY170197 CY170198 CY170199 CY170200 CY170201 CY170202 CY170203 CY170204 CY170205 CY170206 CY170207 CY170208 CY170209 CY170210 CY170211 CY170212 CY170213 CY170214 CY170215 CY170216 CY170217 CY170218 CY170219 CY170220 CY170221 CY170222 CY170223 CY170224 CY170225 CY170226 CY170227 CY170228 CY170229 CY170230 CY170231 CY170232 CY170233 CY170234 CY170235 CY170236 CY170237 CY170238 CY170239 CY170240 CY170241 CY170242 CY170243 CY170244 CY170245 CY170246 CY170247 CY170248 CY170249 CY170250 CY170251 CY170252 CY170253 CY170254 CY170263 CY170264 CY170265 CY170266 CY170267 CY170268 CY170269 CY170270 CY170271 CY170272 CY170273 CY170274 CY170275 CY170276 CY170277 CY170278 CY170279 CY170280 CY170281 CY170282 CY170283 CY170284 CY170285 CY170286 CY170287 CY170288 CY170289 CY170290 CY170291 CY170292 CY170293 CY170294 CY170295 CY170296 CY170297 CY170298 CY170299 CY170300 CY170301 CY170302 CY170303 CY170304 CY170305 CY170306 CY170307 CY170308 CY170309 CY170310 CY170311 CY170312 CY170313 CY170314 CY170315 CY170316 CY170317 CY170318 CY170319 CY170320 CY170321 CY170322 CY170323 CY170324 CY170325 CY170326 CY170327 CY170328 CY170329 CY170330 CY170331 CY170332 CY170333 CY170334 CY170335 CY170336 CY170337 CY170338 CY170339 CY170340 CY170341 CY170342 CY170343 CY170344 CY170345 CY170346 CY170347 CY170348 CY170349 CY170350 CY170351 CY170352 CY170353 CY170354 CY170355 CY170356 CY170357 CY170358 CY170359 CY170360 CY170361 CY170362 CY170363 CY170364 CY170365 CY170366 CY170367 CY170368 CY170369 CY170370 CY170371 CY170372 CY170373 CY170374 CY170375 CY170376 CY170377 CY170378 CY170379 CY170380 CY170381 CY170382 CY170383 CY170384 CY170385 CY170386 CY170387 CY170388 CY170389 CY170390 CY170391 CY170392 CY170393 CY170394 CY170395 CY170396 CY170397 CY170398 CY170399 CY170400 CY170401 CY170402 CY170403 CY170404 CY170405 CY170406 CY170407 CY170408 CY170409 CY170410 CY170411 CY170412 CY170413 CY170414 CY170415 CY170416 CY170417 CY170418 CY170419 CY170420 CY170421 CY170422 CY170423 CY170424 CY170425 CY170426 CY170427 CY170428 CY170429 CY170430 CY170431 CY170432 CY170433 CY170434 CY170435 CY170436 CY170437 CY170438 CY170439 CY170440 CY170441 CY170442 CY170443 CY170444 CY170445 CY170446 CY170447 CY170448 CY170449 CY170450 CY170451 CY170452 CY170453 CY170454 CY170455 CY170456 CY170457 CY170458 CY170459 CY170460 CY170461 CY170462 CY170463 CY170464 CY170465 CY170466 CY170467 CY170468 CY170469 CY170470 CY170471 CY170472 CY170473 CY170474 CY170475 CY170476 CY170477 CY170478 CY170479 CY170480 CY170481 CY170482 CY170483 CY170484 CY170485 CY170486 CY170487 CY170488 CY170489 CY170490 CY170491 CY170492 CY170493 CY170494 CY170495 CY170496 CY170497 CY170498 CY170499 CY170500 CY170501 CY170502 CY170503 CY170504 CY170505 CY170506 CY170507 CY170508 CY170509 CY170510 CY170511 CY170512 CY170513 CY170514 CY170515 CY170516 CY170517 CY170518 CY170519 CY170520 CY170521 CY170522 CY170523 CY170524 CY170525 CY170526 CY170527 CY170528 CY170529 CY170530 CY170531 CY170532 CY170533 CY170534 CY170535 CY170536 CY170537 CY170538 CY170539 CY170540 CY170541 CY170542 CY170543 CY170544 CY170545 CY170546 CY170547 CY170548 CY170549 CY170550 CY170551 CY170552 CY170553 CY170554 CY170555 CY170556 CY170557 CY170558 CY170559 CY170560 CY170561 CY170562 CY170563 CY170564 CY170565 CY170566 CY170567 CY170568 CY170569 CY170570 CY170571 CY170572 CY170573 CY170574 CY170575 CY170576 CY170577 CY170578 CY170579 CY170580 CY170581 CY170582 CY170583 CY170584 CY170585 CY170586 CY170587 CY170588 CY170589 CY170590 CY170591 CY170592 CY170593 CY170594 CY170595 CY170596 CY170597 CY170598 CY170599 CY170600 CY170601 CY170602 CY170603 CY170604 CY170605 CY170606 CY170607 CY170608 CY170609 CY170610 CY170611 CY170612 CY170613 CY170614 CY170615 CY170616 CY170617 CY170618 CY170619 CY170620 CY170621 CY170622 CY170623 CY170624 CY170625 CY170626 CY170627 CY170628 CY170629 CY170630 CY170631 CY170632 CY170633 CY170634 CY170635 CY170636 CY170637 CY170638 CY170639 CY170640 CY170641 CY170642 CY170643 CY170644 CY170645 CY170646 CY170647 CY170648 CY170649 CY170650 CY170651 CY170652 CY170653 CY170654 CY170655 CY170656 CY170657 CY170658 CY170659 CY170660 CY170661 CY170662 CY170663 CY170664 CY170665 CY170666 CY170667 CY170668 CY170669 CY170670 CY170687 CY170688 CY170689 CY170690 CY170691 CY170692 CY170693 CY170694 CY170703 CY170704 CY170705 CY170706 CY170707 CY170708 CY170709 CY170710 CY170711 CY170712 CY170713 CY170714 CY170715 CY170716 CY170717 CY170718 CY170719 CY170720 CY170721 CY170722 CY170723 CY170724 CY170725 CY170726 CY170727 CY170728 CY170729 CY170730 CY170731 CY170732 CY170733 CY170734 CY170735 CY170736 CY170737 CY170738 CY170739 CY170740 CY170741 CY170742 CY170743 CY170744 CY170745 CY170746 CY170747 CY170748 CY170749 CY170750 CY170751 CY170752 CY170753 CY170754 CY170755 CY170756 CY170757 CY170758 CY170759 CY170760 CY170761 CY170762 CY170763 CY170764 CY170765 CY170766 CY170767 CY170768 CY170769 CY170770 CY170771 CY170772 CY170773 CY170774 CY170775 CY170776 CY170777 CY170778 CY170779 CY170780 CY170781 CY170782 CY170783 CY170784 CY170785 CY170786 CY170787 CY170788 CY170789 CY170790 CY170791 CY170792 CY170793 CY170794 CY170795 CY170796 CY170797 CY170798 CY170799 CY170800 CY170801 CY170802 CY170803 CY170804 CY170805 CY170806 CY170807 CY170808 CY170809 CY170810 CY170811 CY170812 CY170813 CY170814 CY170815 CY170816 CY170817 CY170818 CY170819 CY170820 CY170821 CY170822 CY170823 CY170824 CY170825 CY170826 CY170827 CY170828 CY170829 CY170830 CY170831 CY170832 CY170833 CY170834 CY170835 CY170836 CY170837 CY170838 CY170847 CY170848 CY170849 CY170850 CY170851 CY170852 CY170853 CY170854 CY170855 CY170856 CY170857 CY170858 CY170859 CY170860 CY170861 CY170862 CY170863 CY170864 CY170865 CY170866 CY170867 CY170868 CY170869 CY170870 CY170871 CY170872 CY170873 CY170874 CY170875 CY170876 CY170877 CY170878 CY170879 CY170880 CY170881 CY170882 CY170883 CY170884 CY170885 CY170886 CY170887 CY170888 CY170889 CY170890 CY170891 CY170892 CY170893 CY170894 CY170895 CY170896 CY170897 CY170898 CY170899 CY170900 CY170901 CY170902 CY170903 CY170904 CY170905 CY170906 CY170907 CY170908 CY170909 CY170910 CY170911 CY170912 CY170913 CY170914 CY170915 CY170916 CY170917 CY170918 CY170919 CY170920 CY170921 CY170922 CY170923 CY170924 CY170925 CY170926 CY170935 CY170936 CY170937 CY170938 CY170939 CY170940 CY170941 CY170942 CY170943 CY170944 CY170945 CY170946 CY170947 CY170948 CY170949 CY170950 CY170951 CY170952 CY170953 CY170954 CY170955 CY170956 CY170957 CY170958 CY170959 CY170960 CY170961 CY170962 CY170963 CY170964 CY170965 CY170966 CY170967 CY170968 CY170969 CY170970 CY170971 CY170972 CY170973 CY170974 CY170975 CY170976 CY170977 CY170978 CY170979 CY170980 CY170981 CY170982 CY170983 CY170984 CY170985 CY170986 CY170987 CY170988 CY170989 CY170990 CY170991 CY170992 CY170993 CY170994 CY170995 CY170996 CY170997 CY170998 CY170999 CY171000 CY171001 CY171002 CY171003 CY171004 CY171005 CY171006 CY171007 CY171008 CY171009 CY171010 CY171011 CY171012 CY171013 CY171014 CY171015 CY171016 CY171017 CY171018 CY171019 CY171020 CY171021 CY171022 CY171023 CY171024 CY171025 CY171026 CY171027 CY171028 CY171029 CY171030 CY171031 CY171032 CY171033 CY171034 CY171035 CY171036 CY171037 CY171038 CY171039 CY171040 CY171041 CY171042 CY171043 CY171044 CY171045 CY171046 JX656751 JX656752 KC291191 KC526204 KC526205 KC526206 KC526207 KC526208 KC526209 KC526210 KC526211 KC526212 KC526213 KC526214 KC535019 KC535020 KC535021 KC535022 KC535023 KC535024 KC535025 KC535026 KC535027 KC535028 KC535029 KC535030 KC535031 KC535032 KC535033 KC535034 KC535035 KC535036 KC535037 KC535038 KC535039 KC535040 KC535041 KC535042 KC535043 KC535044 KC535045 KC535046 KC535047 KC535048 KC535049 KC535050 KC535051 KC535052 KC535053 KC535054 KC535055 KC535056 KC535057 KC535058 KC535059 KC535060 KC535061 KC535062 KC535063 KC535064 KC539112 KC539113 KC539114 KC539115 KC539116 KC539117 KC539118 KC539119 KC539120 KC539121 KC539122 KC539123 KC539124 KC539125 KC539126 KC539127 KC539128 KC539129 KC539130 KC539131 KC539132 KC539133 KC539134 KC539135 KC539136 KC814205 KC814206 KC814207 KC814208 KC814209 KC814210 KC814211 KC814212 KC814213 KC814214 KC892155 KC892157 KC892199 KC892201 KC892204 KC892215 KC892228 KC892235 KC892238 KC892241 KC892242 KC892247 KC892299 KC892449 KC892487 KC892490 KC892520 KC892524 KC892525 KC892526 KC892527 KC892528 KC892529 KC892530 KC892532 KC892533 KC892534 KC892535 KC892536 KC892537 KC892538 KC892539 KC892540 KC892541 KC892542 KC892544 KC892545 KC892546 KC892547 KC892548 KC892556 KC892560 KC892585 KC892590 KC892599 KC892605 KC892607 KC892613 KC892614 KC892658 KC892659 KC892660 KC892661 KC892662 KC892663 KC892664 KC892665 KC892666 KC892668 KC892682 KC892688 KC892730 KC892736 KC892747 KC892772 KC892786 KC892787 KC892859 KC892887 KC892930 KC892939 KC892958 KC893039 KC893061 KC893062 KC893067 KC893069 KC893070 KC893071 KC893120 KC893124 KC893127 KC893129 KC893130 KC893131 KC893133 KC893136 KC893137 KC893138 KC893139 KC893140 KC893142 KC893143 KC893144 KC893145 KC893147 KC893148 KC893149 KC893150 KC893151 KC893152 KC893153 KC893154 KC893155 KC893156 KC893157 KC893158 KC893159 KC893162 KC893165 KC893167 KC914952 KC914953 KC914954 KC914955 KC914956 KC914957 KC915008 KC915009 KC915010 KC999473 KC999474 KC999475 KC999476 KC999477 KF034876 KF034877 KF034878 KF034879 KF034880 KF034881 KF034882 KF034883 KF041839 KF041841 KF041843 KF041844 KF041845 KF041846 KF041847 KF041848 KF041849 KF041850 KF041851 KF041852 KF041853 KF041854 KF041855 KF041856 KF041857 KF041858 KF041859 KF041860 KF041861 KF041862 KF041863 KF041864 KF041865 KF041866 KF041918 KF041921 KF041922 KF041923 KF041924 KF041925 KF041926 KF041927 KF041928 KF041929 KF041930 KF041931 KF041932 KF041933 KF041934 KF041935 KF041936 KF041937 KF041938 KF041939 KF041940 KF041941 KF142471 KF142476 KF142477 KF199854 KF199856 KF199858 KF199859 KF432080 KF432081 KF432082 KF432083 KF432084 KF432085 KF432086 KF432087 KF451872 KF451873 KF451874 KF451875 KF451876 KF451877 KF451878 KF451879 KF451880 KF451881 KF451882 KF451883 KF451884 KF451885 KF451886 KF451887 KF451888 KF451889 KF451890 KF451891 KF451892 KF451893 KF451894 KF451895 KF451896 KF471234 KF471235 KF471236 KF471237 KF471238 KF471239 KF471240 KF471241 KF471242 KF471243 KF471244 KF471245 KF471246 KF471247 KF471298 KF471299 KF471300 KF471301 KF471302 KF471303 KF471304 KF471305 KF471306 KF471307 KF471308 KF471309 KF471310 KF471311 KF495607 KF495608 KF495609 KF495610 KF495611 KF495612 KF495613 KF495614 KF495615 KF495616 KF495617 KF495618 KF495619 KF495620 KF495621 KF495622 KF495623 KF495624 KF495625 KF495626 KF495627 KF495628 KF668195 KF668196 KF668197 KF668198 KF668199 KF668200 KF668201 KF668202 KF668203 KF668204 KF668205 KF668206 KF668207 KF668220 KF668221 KF668222 KF668223 KF668224 KF668225 KF668226 KF668227 KF668228 KF668229 KF668230 KF668231 KF668232 KF685746 KF685747 KF761472 KF761473 KF761474 KF761475 KF761476 KF761477 KF761478 KF761479 KF761480 KF761481 KF761482 KF761483 KF761484 KF761485 KF761486 KF761487 KF761488 KF761489 KF761490 KF761491 KF761492 KF761493 KF761494 KF761495 KF761496 KF761497 KF761498 KF761499 KF761500 KF761501 KF761502 KF761503 KF761504 KF761505 KF761506 KF761507 KF761508 KF761509 KF761510 KF761511 KF761512 KF761513 KF789532 KF789533 KF789534 KF789535 KF789536 KF789537 KF789538 KF789539 KF789540 KF789541 KF789542 KF789543 KF789544 KF789545 KF789546 KF789547 KF789548 KF789549 KF789550 KF789551 KF789552 KF789553 KF789554 KF789555 KF789556 KF789557 KF789558 KF789559 KF789560 KF789561 KF789562 KF789563 KF789564 KF789565 KF789566 KF789567 KF789568 KF789569 KF789570 KF789571 KF789572 KF789573 KF789574 KF789575 KF789576 KF789577 KF789578 KF789579 KF789580 KF789581 KF789582 KF789583 KF789584 KF789585 KF789586 KF789587 KF789588 KF789589 KF789590 KF789591 KF789592 KF789593 KF789594 KF789595 KF789596 KF789597 KF789598 KF789599 KF789600 KF789601 KF789602 KF789603 KF789604 KF789605 KF789606 KF789607 KF789608 KF789609 KF789610 KF789611 KF789612 KF789613 KF789614 KF789615 KF789616 KF789617 KF789618 KF789619 KF789620 KF789621 KF789622 KF789623 KF789624 KF789625 KF789626 KF789627 KF789628 KF789629 KF789630 KF789631 KF789632 KF789633 KF789634 KF789635 KF789636 KF789637 KF789638 KF789639 KF789640 KF789641 KF789642 KF789643 KF789644 KF789645 KF789646 KF789647 KF789648 KF789649 KF789650 KF789651 KF789652 KF789653 KF789654 KF789655 KF789656 KF789657 KF789658 KF789659 KF789660 KF789661 KF789662 KF789663 KF789664 KF789665 KF789666 KF789667 KF789668 KF789669 KF789670 KF789671 KF789672 KF789673 KF789674 KF789675 KF789676 KF789677 KF789678 KF789679 KF789680 KF789681 KF789682 KF789683 KF789684 KF789685 KF789686 KF789687 KF789688 KF789689 KF789690 KF789691 KF789692 KF789693 KF789699 KF789701 KF789702 KF789703 KF789704 KF789705 KF789706 KF789707 KF789708 KF789709 KF789710 KF789711 KF789712 KF789713 KF789714 KF789715 KF789716 KF789717 KF789718 KF789719 KF789720 KF789721 KF789722 KF789723 KF789724 KF789725 KF789726 KF789727 KF789728 KF789729 KF789730 KF789731 KF789732 KF789733 KF789734 KF789735 KF789736 KF789737 KF789738 KF789739 KF789740 KF789741 KF789742 KF789743 KF789744 KF789745 KF789746 KF789747 KF789748 KF789749 KF789750 KF789751 KF789752 KF789753 KF789754 KF789755 KF789756 KF789757 KF789758 KF789759 KF789760 KF789761 KF789762 KF789763 KF789764 KF789765 KF789766 KF789767 KF789768 KF789769 KF789770 KF789771 KF789772 KF789773 KF789774 KF789775 KF789776 KF789777 KF789778 KF789779 KF789780 KF789781 KF789782 KF789783 KF789784 KF789785 KF789786 KF789787 KF789788 KF789789 KF789790 KF789791 KF789792 KF789793 KF789794 KF789795 KF789796 KF789797 KF789798 KF789799 KF789800 KF789801 KF789802 KF789803 KF789804 KF789805 KF789806 KF789807 KF789808 KF789809 KF789810 KF789811 KF789812 KF789813 KF789814 KF789815 KF789816 KF789817 KF789818 KF789819 KF789820 KF789821 KF789822 KF789823 KF789824 KF789825 KF789826 KF789827 KF789828 KF789829 KF789830 KF789831 KF789832 KF789833 KF789834 KF789835 KF789836 KF789837 KF789838 KF789839 KF789840 KF789841 KF789842 KF789843 KF789844 KF789845 KF789846 KF789847 KF789848 KF789849 KF789850 KF789851 KF789852 KF789853 KF789854 KF789855 KF789856 KF789857 KF789858 KF789859 KF789860 KF789861 KF789862 KF789863 KF789864 KF789865 KF789866 KF789867 KF789868 KF789869 KF789870 KF789871 KF789872 KF789873 KF789874 KF789875 KF789876 KF789877 KF789878 KF789879 KF789880 KF789881 KF789882 KF789883 KF789884 KF789885 KF789886 KF789887 KF789888 KF789889 KF789890 KF789891 KF789892 KF789893 KF789894 KF789895 KF789896 KF789897 KF789898 KF789899 KF789900 KF789901 KF789902 KF789903 KF789904 KF789905 KF789906 KF789907 KF789909 KF789910 KF789911 KF789912 KF789913 KF789914 KF789915 KF789916 KF789917 KF789918 KF789919 KF789920 KF789921 KF789922 KF789923 KF789924 KF789925 KF789926 KF789927 KF789928 KF789929 KF789930 KF789931 KF789932 KF789933 KF789934 KF789935 KF789936 KF789937 KF789938 KF789939 KF789941 KF789942 KF789943 KF789944 KF789945 KF789946 KF789947 KF789948 KF789949 KF789950 KF789951 KF789952 KF789953 KF789954 KF789955 KF789956 KF789957 KF789958 KF789959 KF789960 KF789961 KF789962 KF789963 KF789964 KF789965 KF789966 KF789967 KF789968 KF789969 KF789970 KF789971 KF789972 KF789973 KF789974 KF789975 KF789976 KF789977 KF789978 KF789979 KF789980 KF789981 KF789982 KF789983 KF789984 KF789985 KF789986 KF789987 KF789988 KF789989 KF789990 KF789991 KF789992 KF789993 KF789994 KF789995 KF789996 KF789997 KF789998 KF789999 KF790000 KF790001 KF790002 KF790003 KF790004 KF790005 KF790006 KF790007 KF790008 KF790009 KF790010 KF790011 KF790012 KF790013 KF790014 KF790015 KF790016 KF790017 KF790018 KF790019 KF790020 KF790021 KF790022 KF790023 KF790024 KF790025 KF790026 KF790027 KF790028 KF790029 KF790030 KF790031 KF790032 KF790033 KF790034 KF790035 KF790036 KF790037 KF790038 KF790039 KF790040 KF790041 KF790042 KF790043 KF790044 KF790045 KF790046 KF790047 KF790048 KF790049 KF790051 KF790052 KF790053 KF790054 KF790055 KF790056 KF790057 KF790058 KF790059 KF790060 KF790061 KF790062 KF790063 KF790064 KF790065 KF790066 KF790067 KF790068 KF790069 KF790070 KF790071 KF790072 KF790073 KF790074 KF790075 KF790076 KF790077 KF790078 KF790079 KF790080 KF790081 KF790082 KF790083 KF790084 KF790085 KF790086 KF790087 KF790089 KF790091 KF790092 KF790093 KF790094 KF790095 KF790096 KF790097 KF790098 KF790099 KF790100 KF790101 KF790102 KF790103 KF790104 KF790105 KF790106 KF790107 KF790108 KF790109 KF790110 KF790111 KF790112 KF790113 KF790114 KF790115 KF790116 KF790117 KF790118 KF790119 KF790120 KF790121 KF790122 KF790123 KF790124 KF790125 KF790126 KF790127 KF790128 KF790129 KF790130 KF790131 KF790132 KF790133 KF790134 KF790135 KF790136 KF790137 KF790138 KF790139 KF790140 KF790141 KF790148 KF790149 KF790150 KF790151 KF790152 KF790153 KF790154 KF790155 KF790156 KF790157 KF790158 KF790159 KF790160 KF790161 KF790162 KF790163 KF790164 KF790165 KF790166 KF790167 KF790168 KF790169 KF790170 KF790171 KF790172 KF790173 KF790174 KF790175 KF790176 KF790177 KF790178 KF790179 KF790180 KF790181 KF790182 KF790183 KF790184 KF790185 KF790186 KF790187 KF790188 KF790189 KF790190 KF790191 KF790192 KF790193 KF790194 KF790195 KF790196 KF790197 KF790198 KF790199 KF790200 KF790201 KF790202 KF790203 KF790204 KF790205 KF790206 KF790207 KF790209 KF790210 KF790211 KF790212 KF790213 KF790214 KF790215 KF790216 KF790217 KF790218 KF790219 KF790220 KF790221 KF790222 KF790223 KF790224 KF790225 KF790226 KF790227 KF790228 KF790229 KF790230 KF790231 KF790232 KF790233 KF790234 KF790235 KF790236 KF790237 KF790238 KF790239 KF790240 KF790241 KF790242 KF790243 KF790244 KF790245 KF790246 KF790247 KF790248 KF790249 KF790250 KF790251 KF790252 KF790253 KF790254 KF790255 KF790256 KF790257 KF790258 KF790259 KF790260 KF790261 KF790262 KF790263 KF790264 KF790265 KF790266 KF790267 KF790268 KF790269 KF790270 KF790271 KF790272 KF790273 KF790274 KF790275 KF790276 KF790277 KF790278 KF790279 KF790280 KF790281 KF790282 KF790283 KF790284 KF790285 KF790286 KF790287 KF790288 KF790289 KF790290 KF790291 KF790292 KF790293 KF790294 KF790295 KF790296 KF790300 KF790301 KF790302 KF790303 KF790304 KF790305 KF790306 KF790307 KF790308 KF790309 KF790310 KF790311 KF790312 KF790313 KF790314 KF790315 KF790316 KF790317 KF790318 KF790319 KF790320 KF790321 KF790322 KF790323 KF790324 KF790325 KF790326 KF790327 KF790328 KF790329 KF790330 KF790331 KF790332 KF790333 KF790334 KF790335 KF790336 KF790337 KF790338 KF790339 KF790340 KF790341 KF790342 KF790343 KF790344 KF790345 KF790346 KF790347 KF790348 KF790349 KF790350 KF790351 KF790352 KF790353 KF790354 KF790356 KF790357 KF790358 KF790359 KF790360 KF790361 KF790362 KF790363 KF790364 KF790365 KF790366 KF790367 KF790368 KF790369 KF790370 KF790371 KF790372 KF790373 KF790374 KF790375 KF790376 KF790377 KF790378 KF790379 KF790381 KF790382 KF790383 KF790384 KF790385 KF790386 KF790387 KF790388 KF790389 KF790390 KF790391 KF790392 KF790393 KF790394 KF790395 KF790396 KF790397 KF790398 KF790399 KF790400 KF790401 KF790402 KF790403 KF790404 KF790405 KF790406 KF790407 KF790408 KF790409 KF790410 KF790411 KF790412 KF790413 KF790414 KF790415 KF790416 KF790417 KF790418 KF790419 KF790420 KF790421 KF790422 KF790423 KF790424 KF790425 KF790426 KF790428 KF790429 KF790430 KF790431 KF790432 KF790433 KF790434 KF790435 KF790436 KF790437 KF790438 KF790439 KF790440 KF790441 KF790442 KF790443 KF790444 KF790445 KF790446 KF790447 KF790448 KF790449 KF790450 KF790451 KF790452 KF790453 KF790454 KF790455 KF790456 KF790457 KF790458 KF790459 KF790460 KF790461 KF790462 KF790463 KF790464 KF790465 KF790466 KF790467 KF790468 KF790469 KF790470 KF790471 KF790472 KF790473 KF790474 KF790475 KF790476 KF790477 KF790478 KF790479 KF790480 KF790481 KF790482 KF790483 KF790484 KF790485 KF790486 KF790487 KF790488 KF790489 KF790490 KF790491 KF790492 KF790493 KF790494 KF790495 KF790496 KF790497 KF790498 KF790499 KF790500 KF790501 KF790502 KF790503 KF790504 KF790505 KF790506 KF790507 KF790508 KF790509 KF790510 KF790511 KF790512 KF790513 KF790514 KF790515 KF790516 KF790517 KF790518 KF790519 KF790520 KF790521 KF790522 KF790523 KF790524 KF790525 KF790526 KF790527 KF790528 KF790529 KF790530 KF790531 KF790532 KF790533 KF805633 KF805634 KF805635 KF805636 KF805637 KF805638 KF805639 KF805640 KF805641 KF805642 KF805643 KF805644 KF805645 KF805646 KF805647 KF805648 KF805649 KF805650 KF805651 KF805652 KF805653 KF805654 KF805655 KF805656 KF805657 KF805658 KF805659 KF805660 KF805661 KF805662 KF805663 KF805664 KF805665 KF805666 KF805667 KF805668 KF805669 KF805670 KF805671 KF805672 KF805673 KF805674 KF805675 KF805676 KF805677 KF805678 KF805679 KF805680 KF805681 KF805682 KF805683 KF805684 KF805685 KF805686 KF805687 KF805688 KF805689 KF805690 KF805691 KF805692 KF805693 KF805694 KF805695 KF805696 KF805697 KF805698 KF805699 KF805700 KF805701 KF805702 KF805703 KF805704 KF805705 KF805706 KF805707 KF805708 KF805709 KF805710 KF805711 KF805712 KF850641 KF850642 KF850644 KF850645 KF850646 KF850648 KF850649 KF850650 KF850651 KF850652 KF850653 KF850654 KF850655 KF850656 KF850658 KF850659 KF850660 KF850661 KF850662 KF850663 KF850664 KF850666 KF850670 KF850671 KF850674 KF850675 KF850676 KF850677 KF850679 KF886297 KF886301 KF886303 KF886305 KF886306 KF886309 KF886310 KF886312 KF886315 KF886321 KF886322 KF886323 KF886324 KF886332 KF886335 KF886337 KF886340 KF886341 KF886343 KF886344 KF886347 KF886348 KF886349 KF886350 KF886351 KF886352 KF886353 KF886354 KF886355 KF886356 KF886357 KF886358 KF886359 KF886360 KF886361 KF886362 KF886363 KF886364 KF928614 KF928615 KF928616 KF928617 KF928618 KF928619 KF928620 KF928621 KF928622 KF928623 KF928624 KF928625 KF928626 KF928627 KF928628 KF928629 KF928630 KF928631 KF928632 KF928633 KF928640 KF928641 KF928642 KF928643 KJ138416 KJ138417 KJ196075 KJ196076 KJ196077 KJ196078 KJ196079 KJ196080 KJ206241 KJ206242 KJ206243 KJ206244 KJ206245 KJ206246 KJ206247 KJ206248 KJ206249 KJ206250 KJ206251 KJ206252 KJ206253 KJ206254 KJ206255 KJ206256 KJ206257 KJ206258 KJ206259 KJ206260 KJ206261 KJ206262 KJ206263 KJ206264 KJ206265 KJ206266 KJ206267 KJ206268 KJ206269 KJ528271 KJ540627 KJ561735 KJ561736 KJ561737 KJ561738 KJ561739 KJ561740 KJ561741 KJ561742 KJ561751 KJ561752 KJ561753 KJ561754 KJ561755 KJ561756 KJ561757 KJ561758
xw01.gif : 2200 H3N2 genomes from the 2007ff-strain
genbank as of Aug.2014
Leave a comment:
-
Re: H3n2
cause for concern ? I don't know. You'd have to compare it with the epidemiology in India
in May-July. Checking reassortments could be more important, here we only have segments 4,6,7
so far I checked 4,6 but I separated the genomes because that was easier.
I'm just tracking these to see from where to where it goes.
The American sequences are from winter 2012/2013 , the India sequences are from mid 2013
we'll have to wait for 2013/4 sequences to see whether the India mutations come to
Europe or even USA. USA had H3 last season, they may get mainly H1 this coming season
and some B later in March.
USA is doing this worldwide airplane collecting, "AF" (airforce) - sequences , HA only.
So maybe we'll know soon about the India mutations.
percent B since 1957 was:
50s:00,75,03,
60s:31,95,00,05,30,60,50,05,15,10
70s:05,01,04,76,00,02,70,01,03,98
80s:00,74,11,45,03,76,01,17,43,00
90s:86,01,71,01,26,15,22,01,23,01
00s:47,14,44,01,25,19,21,29,38,00
10s:26,18,22
-----------------------------------------------------------
India had : T144A,R158G,(L173S),V363K
amino-acid mutations in H3N2-HA since 1968:
Code:0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000 0000000000000000000000000011111111111111111111111111111111122222222222222222222222222222222222333333333334444444555555 0011111122244466667777999900112233344445555556667777777888800000011111122223344444566677789999001224679990066669000245 7914568924617914690389148948072337802791346890121234569078924568923458934898912356802467891246185387371340216895369267 ---------------------------------------------------------------------------------------------------------------------- LYFALGDLNNTLDQSTKNNRIDHVETVKFDASTITGTTNGNAKGPGSGTKSGSTVLNDNSNQETSVQASVTRRTIWVGLSRIVVNNMRTPDTIENKKKNLITDINVENKRREDVDEVR >1968//,182,CHN,A/Beijing/1/68 ...................................................................................................................... >1972//,1643,RUS,A/Udorn/307/72 ...V...F....N..........G..........S..........D..Y...........D..........K..........I.......G....................G.....K >1979//,4199,THA,A/Bangkok/01/79 ...VFAN.....N...RDS.KN.G.K........N.N.S.Y...SDNSYE.E.K...G..DK..K.R....K........G.IL..I...G.S......IV..........G.....K >1983//,5660,HKG,A/HK/14/83 ...VFAK.....N...RDS.KN.G.K........N.N.S.Y...SVNSYE.E.K...GKIDK..N.R....K..V.......IL.TI...G.S....R.IV....L....KG.....K >1989//,7852,CHN,A/Beijing/353/89 ..LVFAK.....N...RDS.KN.GKE..Y.....NDNASEY...SVKSHE.EYKA..GK.DR..N.R....K..V.......IL.TI...G.S...RR.IV....L....KG.....K >1997/11/29,10924,USA,A/NY/503/97 ..SVFAK.....N...RDS.EN.GKE..Y....NNSNA.TY..RSIKSHQLKYKA...K.DSD..A.....K..V...V...IL.TI.S.GKN.D.RR.IV.N..L..R.KG.....K >2003/04/23,12897,USA,A/NY/214/03 ..LVFAK....IN...GDSQENQGKK..Y....NNSN..TS..RSNKS.HLKYKA..EKGDSDI.A...I.K..VR.DV...IL.TI.S.GKN...RR.IV.N..LG.RKKG....AK >A/Wisconsin/67/2005/08/ ..LVFAK....IN...GDSQENQGKK..Y....NDSN..TSS.RSNNS.QLKFKA..EKVDNDIFA...I.K..VRINIP..IL.TI.S.GKN...RR.IVIN..LG.RKKG....AK >2007/02/06,14278,AUS,A/Brisbane/10/07 ..LVFTK....IN...EDSQENQGKK..Y....NNSN..TS.IRSNNS.HLKFKA..EKGDNDIFA...I.K..VR.NIP..IL.TI.S.GKN...RR.IVI...LG..KKG....AK >Index/Brisbane-like/2007 ..LVFAK....IN...EDSQENQGKK..Y....NNSN..TS.IRSNNS.HLKFKA..EKGDNDVFA...I.K..VR.NIP..IL.TI.S.GKN...RR.IVI...LG..KKG....AK >Index/Perth-like/2009 ..LVFAK....IN...EDSQKNQGKK..Y....NNSN..TS.IRSKNS.HLNFKA..EQGDKDIFA...I.K..VR.NIP..IL.TI.S.GKN...RR.IVR...LG..KKG....AK >Index/2009/Egypt/Iowa ..LVFAK....IN...EDSQENQGKK..Y....NNSN..TS.IRSNNS.HLNFKA..EQGDKDIFA...I.K.AVR.NIP..IL.TI.S.GKN...RR.IVR...LG..KKG....AK >Index/USA-2007 ..LVFAK....IN...EDSQENQGKK..Y....NNSN..TS.IRSNNS.HLKFKA..EKGDNDIFA...I.K..VR.NIP..IL.TI.S.GKN...RR.IVI...LG..KKG....AK >A/swine/Ontario/33853/2005(H3N2) FCLIFAK.S.M.....R.SQKN.DKE.TYY...TQSNADSY.RESVNSHNLDYKA...KGDRD.N......K..V...V.I.IL.TIQS.GNN...RR.IV.N.T.K.R.KG...Q.K >A/Sw/Index/triple-reassortant/1998(H3N2) ..LVFAK.....N...RDS.KN.GKEI.Y.S..TNDNAD.YS.ESVKSH.LEYKA...K.DS......I..KS.V...I...ILSTI.N..NY...R.KIV..V.L....KG.....K >A/Index/1968(H3N2) ...................................................................................................................... >A/Index_Fujian/2002(H3N2) ..LVFAK....IN...GDSQENQGKK..Y....NNSN..TS..RSNKS.QLKYKA..EKGDSDI.A...I.K..VR.DV...IL.TI.S.GKN...RR.IV.N..LG.RKKG....AK >A/Index_Fujian/USA/2003(H3N2) ..LVFAK....IN...GDSQENQGKK..Y....NNSN..TS..RSNKS.HLKYKA..EKGDSDI.A...I.K..VR.DV...IL.TI.S.GKN...RR.IV.N..LG.RKK.....AK >A/Index_Fujian_reass./2003/06(H3N2) ..LVFAK....IN...GDSQENQGKK..Y....NNSD..TS..RSNKS.HLKYKA..EKGDSDI.A...I.K..VR.DV...IL.TI.S.GKN...RR.IV.N..LG.RKKG....AK >A/Index/32v/2011(H3N2) FCLIFAK.S.M.....R.SQKN.DKE.TYY.TNTQSNADSY.R.SVNSYNLNYKEQ..KGDKD.N.....IK..V...V.I.IL.TIQSH.EN....R.IV.N.T.KSR..G.INQ.K >Index/H3N3-2011-reassortedEI/2011(H3N2) ..LVFAK....IN...E.SQENQGKK..H....NNSN..TS.IRSNNS.HLNFKA..EQGDKDIFA...I.K.AVR.NIP.VIL.TI.S.GKNA..RR.IVR...LG..KKG....AK >Index/H3N2-2011-normalEI/2011(H3N2) ..LVFAK....IN..AEDSHENQGKK.RY....NNSN..TS.IRSNNS.HLNFKA..EQGDKDIFA...I.K.AVR.NIP..IL.TI.S.GKN...RRSIMR...LG..KKG....AK >Index/2009/Egypt-Iowa+NA,2009// ..LVFAK....IN...EDSQENQGKK..Y....NNSN..TS.IRSNNS.HLNFKA..EQGDKDIFA...I.K.AVR.NIP..IL.TI.S.GKN...RR.IVR...LG..KKG....AK >A/Czech Republic/121/2012,2012/03/06,Czech Republic ..LVFAK....INRNI.DSQENQGKK..Y....NNNN..TS.IRSNNS.HLNFKA.DEQGDKDIFA.S.I.K.AVRINIP..IL.TI.S.GKK...RRSIVR...LG..KKG....AK >Index/32g12f1.c2,10-37 ..LVFAK....INRNIEDSQENQGKK..Y....NNSN..TS.IRSN.S.HLNFKA..EQGDKDIFA.S.I.K.AVRINIP..IL.TI.S.GKK...RRSIVR...LG..KKG....AK >Index/32g12f1.c2,38-41 ..LVFAK....INRNIEDSQENQGKK..Y....NNNN..TS.IRSN.S.HLNFKA..EQGDKDIFA.S.I.K.AVRINIP..IL.TI.S.GKK..RRRSIVR...LG..KKG....AK >Index/32g12f1.c2,42-53 ..LVFAK....IN...EDSQENQGKK..Y....NNSN..TS.IRSD.S.HLNFKA..EQGDKDIFA...I.K.SVRINIP..IL.TIQS.GKN...RR.IVR...LG..KKGN...AK >Index/32g12f1.c2,55-62 ..LVFAE..D.INR..E.SQENQGKK..H....NNSN..TS.IRSNNS.HLNFKA..EQGDKDIFA...I.K..VR.NIP.VIL.TI.S.GKNA..RR.IVR...LG..KKG....AK 0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000 0000000000000000000000000011111111111111111111111111111111122222222222222222222222222222222222333333333334444444555555 0011111122244466667777999900112233344445555556667777777888800000011111122223344444566677789999001224679990066669000245 7914568924617914690389148948072337802791346890121234569078924568923458934898912356802467891246185387371340216895369267 ---------------------------------------------------------------------------------------------------------------------- LYFALGDLNNTLDQSTKNNRIDHVETVKFDASTITGTTNGNAKGPGSGTKSGSTVLNDNSNQETSVQASVTRRTIWVGLSRIVVNNMRTPDTIENKKKNLITDINVENKRREDVDEVR
antigenic sites:
Cb 78-83 = 92-97 = SWSYIV
Sa 128-129 = 142-143
156-160 = 157-159 or 171-173 = KKGNS > 511-513 aaa 514-516 gga 517-519 aat
162-167= 176-181
Sb 187-198=
Ca1 169-173= 206-208= 238-240=
Ca2 140-145= 224-226=
India had : T144A,R158G,(L173S),V363K
so R158G and L173S mutated back to what we had before ~1990
T144A is new
(I'm not sure about the numbering - since this is H3, others should have the same numbers ?!)
human H3N2-HA that we have so far since May,2013 :
Code:00000000000000 00011111222335 46645667139260 91448123494835 -------------- QSTTRNSLAVNNVD >Index/2009/Egypt/Iowa .............. >AGY41834,A/India/LKO3818/2013,2013/06/25,India,H3N2,Human,4 ---AGS..SIKS-- >AGY41835,A/India/LKO3824/2013,2013/06/26,India,H3N2,Human,4 ---AGS.SSIKS-- >AGY41836,A/India/LKO3825/2013,2013/06/26,India,H3N2,Human,4 ---AGS.SSIKS-- >AGY41837,A/India/LKO3839/2013,2013/06/29,India,H3N2,Human,4 ---AGS.SSIKS-- >AGY41838,A/India/LKO3863/2013,2013/07/06,India,H3N2,Human,4 ----GS..SIKS-- >AGY41839,A/India/LKO3876/2013,2013/07/09,India,H3N2,Human,4 ---AGSGSSIKS-- >AGY41840,A/India/LKO3887/2013,2013/07/10,India,H3N2,Human,4 ----GS..SIKSK- >AGY41841,A/India/LKO3889/2013,2013/07/11,India,H3N2,Human,4 ---AGS.SSIKS-- >AGY41842,A/India/LKO3893/2013,2013/07/12,India,H3N2,Human,4 ---AGS..SIKS-- >AGY41843,A/India/LKO3906/2013,2013/07/15,India,H3N2,Human,4 ----GS.SSIKSK- >AGY41844,A/India/LKO3913/2013,2013/07/16,India,H3N2,Human,4 ---AGS..SIKSK- >AGY41845,A/India/LKO3914/2013,2013/07/16,India,H3N2,Human,4 ---AGS..SIKSK- >AGU01874,A/Taiwan/80710/2013,2013/05/10,Taiwan,H3N2,Human,4 RNI..S..SIKS.N >AGU01876,A/Taiwan/80720/2013,2013/05/13,Taiwan,H3N2,Human,4 RNI..S..SIKS.N >AGU01875,A/Taiwan/80723/2013,2013/05/14,Taiwan,H3N2,Human,4 RNI..S.SSIKS.N 00000000000000 00011111222335 46645667139260 91448123494835 -------------- QSTTRNSLAVNNVD
Leave a comment:
-
Re: H3n2
Are the Indian mutations cause for concern?
Do the US sequences share the mutations that the Indian sequences have?
Leave a comment:
-
Re: H3n2
2013/11/07
H3N2 from USA, season 2012/3 , from all states, mainly segments 4,6,7
Code:17,Alabama/ 58,Alaska/ 9,Arizona/ 18,Arkansas 42,Californ 21,Colorado 6,Connecti 30,Delaware 9,District 30,Florida/ 15,Georgia/ 36,Hawaii/ 21,Idaho/ 6,Illinois 12,Indiana/ 18,Iowa/ 18,Kansas/ 18,Kentucky 18,Louisian 12,Maine/ 27,Maryland 27,Massachu 28,Michigan 15,Minnesot 12,Mississi 15,Missouri 15,Montana/ 18,Nebraska 24,Nevada/ 18,New Hamp 15,New Jers 27,New Mexi 42,New York 21,North Ca 15,North Da 15,Ohio/ 21,Oklahoma 15,Oregon/ 18,Pennsylv 12,Rhode Is 12,South Ca 21,South Da 9,Tennesse 39,Texas/ 12,Utah/ 15,Vermont/ 18,Virginia 32,Washingt 18,West Vir 21,Wisconsi 12,Wyoming/
Code:0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000011111111111111111111111111111111111111111111111111111111111111111111111111111 0000000000000000000001111111111111112222222222222233333333334444444444444444455555555555556666666666666677777777777777788888888888999999999999900000000000111111111111122222222223333333333334444444444455555555555666666666 0122233334445557778990334445667888990011223477888901124556990111233456677789900111234466990001223448889900011122336668812333477889013456777889900111345888011123566799901345567892234456667891123445789900112455677112356778 9812836793582570284368594676251027155609287069125130685784035389005760823822814689870314163596399032790345904516262584569037303271359446258383459147276037103551867314508654795160384732351923687398451479384547958344732013 -codon-position--------------------------------------------- 11 1 1 11 1 1 2 212 12 2 111 11 212 1 1 1212 2 2 2 122 111 2 2 12 11 1 12 122 2 2 21 1 1 1 2 2 1 1 1 1 1 2 12 2 ---Index----------------------------------------------------TTGAAATCGTCTACTACGGTGACACAATTTGGGTCTGATGCTCCTTGCCTCGCTTGGGACGAAGCAACCGAAGAATAGTCTAAAGCTAGAGGGGTTAGTGATCGCTCCAGACCAAGAAATCGGGCTCTACTCAGCCTTGACATACATATCGGAGCGTAGATCATGTAGGACCAGTATCGCGCTTCACGTGGGCTCCGACAGCGAAGCGGAGTATCCCAAG 1 >Index/2009/Egypt/Iowa ............................................................................................................................................................................................................................ 0 0 , 0 0 1:>Index/2009/Egypt/Iowa 2 >KF790169,A/Oklahoma/04/2012(H3N2) ..........T..........G..............A..T.........C...C....C.A........T........................A...G...T......AG..G.A............C...............A.....T....A..............T...........C....................G.A.............. 30 24 , 30 24 2:>KF790169,A/Oklahoma/04/2012(H3N2) 3 >KF790050,A/Florida/68/2012(H3N2) .....................G..............A............C...CC..................................T........G...T..........G..............C...............A.....T........G......................C...T................G.A.............. 18 17 , 18 17 3:>KF790050,A/Florida/68/2012(H3N2) 4 >KF789819,A/Virginia/16/2012(H3N2) .....................G..............A....C.......C...CC.................................AT........G...T..C..G....G..............C.C.............A.....T...T....G......................C...T...............TG.A.....C........ 25 25 , 25 25 4:>KF789819,A/Virginia/16/2012(H3N2) 5 >KF789670,A/Virginia/15/2012(H3N2) .....................G..............A....C.......C...CC.................................A.........G...T..C..G....G..............C.C.............A.....T...T....G......................C...T...............TG.A.....C........ 24 24 , 24 24 5:>KF789670,A/Virginia/15/2012(H3N2) 6 >KF789706,A/Tennessee/18/2012(H3N2) .....................G..............A....C.......C...CC.................................A.........G...T..C..G....G..............C.C.............A.....T...T....G......................C...T...............TG.A.....C........ 25 24 , 25 24 6:>KF789706,A/Tennessee/18/2012(H3N2) 7 >KF789804,A/Virginia/16/2012(H3N2) .....................G..............A....C.......C...CC.................................A.........G...T..C..G....G..............C.C.............A.....T...T....G......................C...T...............TG.A.....C........ 24 24 , 24 24 7:>KF789804,A/Virginia/16/2012(H3N2) 8 >KF789782,A/Michigan/33/2012(H3N2) .....................G..............A....C.......C...CC.................................A.........G...T..C..G....G..............C.C.............A.....T...T....G......................C...T...............TG.A.....C........ 24 24 , 24 24 8:>KF789782,A/Michigan/33/2012(H3N2) 9 >KF790488,A/South Carolina/22/2012(H3N2) .....................G..............A............C...CC.................................A.........G...T..C..G....G..............C.C.............A.....T...T....G......................C...T...............TG.A.....C........ 23 23 , 23 23 9:>KF790488,A/South Carolina/22/2012(H3N2) 10 >KF790479,A/South Carolina/24/2012(H3N2) .....................G..............A............C...CC.................................A.........G...T..C.TG....G..............C.C.............A.....T...T....G......................C...T...............TG.A.....C........ 24 24 , 24 24 10:>KF790479,A/South Carolina/24/2012(H3N2) 11 >KF789707,A/Kentucky/18/2012(H3N2) .....................G..............A............C...CC.................................A.........G...T..C..G....G..............C.C.............A.....T...T....G......................C...T...............TG.A.....C........ 23 23 , 23 23 11:>KF789707,A/Kentucky/18/2012(H3N2) 12 >KF790495,A/Tennessee/10/2012(H3N2) .....................G..............A............C...CC.................................A.........G...T..C..G....G..............C.C.............A.....T...T....G......................C...T...............TG.A.....C.C...... 25 24 , 25 24 12:>KF790495,A/Tennessee/10/2012(H3N2) 13 >KF789604,A/Kentucky/17/2012(H3N2) .....................G..............A............C...CC.................................A.........G...T..C..G....G..............C.C.............A.....T...T....G......................C...T...............TG.A.....C........ 23 23 , 23 23 13:>KF789604,A/Kentucky/17/2012(H3N2) 14 >KF790048,A/South Carolina/24/2012(H3N2) .....................G..............A............C...CC.................................A..T......G...T.YC..G....G..............C.C.............A.....T...T....G......................C...T...............TG.A.....C........ 25 25 , 25 25 14:>KF790048,A/South Carolina/24/2012(H3N2) 15 >KF789899,A/Kentucky/24/2012(H3N2) .....................G..............A............C...CC.................................A.........G...T.YC..G....G..............C.C.............A.....T...T....G......................C...T...............TG.A.....C........ 25 24 , 25 24 15:>KF789899,A/Kentucky/24/2012(H3N2) 16 >KF790491,A/Louisiana/11/2012(H3N2) ..............C......G..............A............C...C.....T...................T..............C...G...T..........G.........A....C.........A.....A.....T....A...G......................C....................G.A........T..... 26 22 , 26 22 16:>KF790491,A/Louisiana/11/2012(H3N2) 17 >KF790063,A/Delaware/23/2012(H3N2) C.......A...G..G.....G.G............A............C...C.........................T......................T..........G...C.....A....C........C......A..............G......................C..................T.G.A.............. 23 22 , 23 22 17:>KF790063,A/Delaware/23/2012(H3N2) 18 >KF790081,A/Delaware/23/2012(H3N2) C.......A...G..G.....G.G............A............C...C.........................T......................T..........G.........A....C........C......A..............G......................C..................T.G.A.............. 21 21 , 21 21 18:>KF790081,A/Delaware/23/2012(H3N2) 19 >KF789534,A/California/55/2012(H3N2) C.......A.T.G..G.A...GA.......A.....A............C...C........................................C.......T..........G..............C........C......A..............G....A.................C..................T.G.A.............. 24 24 , 24 24 19:>KF789534,A/California/55/2012(H3N2) 20 >KF789944,A/Florida/01/2013(H3N2) C.......A.T.G..G.....G........A.....A............C...C................................................T...M......G..G...........C........C......A..............G......................C..................T.G.A.............. 25 22 , 25 22 20:>KF789944,A/Florida/01/2013(H3N2) 21 >KF790287,A/South Carolina/16/2012(H3N2) C.......A.T.G..G.....G........A.....A............C...C................................................T..........G..............C........C......A..............G......................C..................T.G.A.............. 20 20 , 20 20 21:>KF790287,A/South Carolina/16/2012(H3N2) 22 >KF790212,A/Alaska/02/2013(H3N2) C.......A.T.G..G.....G........A.....A............C...C................................................T..........G..............C........C......A........A.....G......................C..................T.G.A.............. 21 21 , 21 21 22:>KF790212,A/Alaska/02/2013(H3N2) 23 >KF790407,A/Alaska/02/2013(H3N2) C.......A.T.G..G.....G........A.....A............C...C................................................T..........G..............C........C......A........A.....G......................C..................T.G.A.............. 21 21 , 21 21 23:>KF790407,A/Alaska/02/2013(H3N2) 24 >KF789805,A/Georgia/22/2012(H3N2) C.......A.T.G..G.....G........A.....A............C...C................................................T.......R..G..............C........C......A..............G......................C..................T.G.A.............. 21 21 , 21 21 24:>KF789805,A/Georgia/22/2012(H3N2) 25 >KF789665,A/Georgia/16/2012(H3N2) C....T..A...G..G.....G..............A........C...C...C.................GA........G....................T.......G..G..........T...C........C......A..............G.T....................C..................T.G.A.A............ 27 27 , 27 27 25:>KF789665,A/Georgia/16/2012(H3N2) 26 >KF789690,A/Georgia/15/2012(H3N2) C....T..A...G..G.....G..............A........C...C...C.................GA........G....................T.......G..G..........T...C........C......A..............G.T....................C..................T.G.A.A............ 27 27 , 27 27 26:>KF789690,A/Georgia/15/2012(H3N2) 27 >KF789983,A/Florida/39/2012(H3N2) C.......A...G..G.....G..............A............C..AC.A..............................................T.......G..GGA............C........C......A..............G......................C..................T.G.A.............. 26 23 , 26 23 27:>KF789983,A/Florida/39/2012(H3N2) 28 >KF789748,A/Louisiana/16/2012(H3N2) C.......A...G..G.....G..............A............C..AC.A..............................................T....Y.....G.A............C........C......A..............G......................C..................T.G.A.............. 23 22 , 23 22 28:>KF789748,A/Louisiana/16/2012(H3N2) 29 >KF790278,A/New York/40/2012(H3N2) C.......A...G..G.....G..............A............C..AC.A..............................................T..........G.A............C........C......A..............G......................C..................T.G.A.............. 21 21 , 21 21 29:>KF790278,A/New York/40/2012(H3N2) 30 >Index/32g12f1.c2,55-62 C.......A...G..G.....G...G..........A............C..AC.............................................A..T..........G.A.......A....C........C......A....T.........G......................C..................T.G.A.............. 24 24 , 24 24 30:>Index/32g12f1.c2,55-62 31 >KF790178,A/Vermont/16/2012(H3N2) C.......A...G..G.....G..............A............C...C................................................T..........G.A............C........C......A..............G......................C................G.T.G.A.............. 21 20 , 21 20 31:>KF790178,A/Vermont/16/2012(H3N2) 32 >KF789680,A/Virginia/14/2012(H3N2) C.......A...G..G.....G..............A............C...C................................................T..........G.A............C.....T..C......A..G...........G............G.........C..................T.G.A.............. 22 22 , 22 22 32:>KF789680,A/Virginia/14/2012(H3N2) 33 >KF789674,A/Maryland/43/2012(H3N2) C.......A...G..G.....G..............A............C...C................................................T..........G.A............C.....T..C......A..G...........G............G.........C..................T.G.A.............. 23 22 , 23 22 33:>KF789674,A/Maryland/43/2012(H3N2) 34 >KF789912,A/Alabama/35/2012(H3N2) C.......A...G..G.....G..............A............C...C................................................T..........G.A............C.....T..C......A..G...........G............G.........C..................T.G.A.............. 22 22 , 22 22 34:>KF789912,A/Alabama/35/2012(H3N2) 35 >KF790242,A/Nevada/26/2012(H3N2) C.......A...G..G.....G..............A............C...C.................................G..............T....M.....G..............C........C......A..............G......................C..................T.G.A....A......... 23 21 , 23 21 35:>KF790242,A/Nevada/26/2012(H3N2) 36 >KF790209,A/Mississippi/12/2012(H3N2) C.....C.A...G.CG.....G..............A............C...C..............G.................................T..........G..............C........C.....GA..............G......................C..................T.G.A.............. 22 22 , 22 22 36:>KF790209,A/Mississippi/12/2012(H3N2) 37 >KF790093,A/Wisconsin/37/2012(H3N2) C.....C.A...G.CG.....G..............A............C...C................................................T..........G..............C........C.....GA..............G......................C..................T.G.A.............. 22 21 , 22 21 37:>KF790093,A/Wisconsin/37/2012(H3N2) 38 >KF790402,A/Nebraska/04/2013(H3N2) C.....C.A...G.CG.....G..............A............C...C................................................T..........G..............C........C......A......A.......G......................C..................T.G.A.............. 22 21 , 22 21 38:>KF790402,A/Nebraska/04/2013(H3N2) 39 >KF790265,A/Mississippi/13/2012(H3N2) C.......A...G..G.....G..............A............C...C................................................T..........G..............C........C......A...Y..........G......................C..................T.G.A.............. 20 19 , 20 19 39:>KF790265,A/Mississippi/13/2012(H3N2) 40 >KF789596,A/Colorado/20/2012(H3N2) C.......A...G........G..............A............C...C................................................T..........G.........A....C........C......A..............G......................C..................T.G.A.............. 18 18 , 18 18 40:>KF789596,A/Colorado/20/2012(H3N2) 41 >Index/H3N3-2011-reassortedEI/2011(H3N2) .....................G..............A............C...C................................................T..........G..............C...............A..............G......................C....................G.A.............. 12 12 , 12 12 41:>Index/H3N3-2011-reassortedEI/2011(H3N2) 42 >Index/H3N2-2011-normalEI/2011(H3N2) C......................................T...................................................................................................G.............A.................................................................. 7 4 , 7 4 42:>Index/H3N2-2011-normalEI/2011(H3N2) 43 >KC892570,A/Pennsylvania/09/2012(H3N2) .......T........T........G......AAT.................................T........A...................T...........A.................G...........G..........................C....A............T................T.................. 16 16 , 16 16 43:>KC892570,A/Pennsylvania/09/2012(H3N2) 44 >KF789697,A/Pennsylvania/09/2012(H3N2) .......T........T........G......AAT.................................T........A.................C.T.....A.....A.................G...........G..........................C....A............T................T.................. 18 18 , 18 18 44:>KF789697,A/Pennsylvania/09/2012(H3N2) 45 >KF789838,A/Wisconsin/06/2013(H3N2) ................T........G......A.T.............T................G..T..G..G..A...................T...........AR................G...........G..........................C....A....A...........................G............... 20 19 , 20 19 45:>KF789838,A/Wisconsin/06/2013(H3N2) 46 >KF789767,A/New Mexico/11/2013(H3N2) C...............T........G......A.T.............T................G..T..G..G.GA...................T...........AR.....G..........G...........G..........................CA...A....A.........................A.G.............G. 26 25 , 26 25 46:>KF789767,A/New Mexico/11/2013(H3N2) 47 >KF789567,A/Idaho/03/2013(H3N2) C...............T........G......A.T.............T................G..T..G..G..A...................T...........A......G..........G...........G..........................CA...A....A.........................A.G.............G. 23 23 , 23 23 47:>KF789567,A/Idaho/03/2013(H3N2) 48 >KF790514,A/Arizona/11/2012(H3N2) C...............T........G......A.T.............T................G..TT.G..G..A...................T...........A......G..........G...........G..........................CA...A....A.........................A.G.............G. 25 24 , 25 24 48:>KF790514,A/Arizona/11/2012(H3N2) 49 >KF790408,A/Texas/11/2013(H3N2) ................T........G......A.T.............T................G..TT.G..G..A...................T...........A.................G...T.......G..........................C....A....A...........................G.............G. 21 21 , 21 21 49:>KF790408,A/Texas/11/2013(H3N2) 50 >KF790027,A/Massachusetts/07/2013(H3N2) ................T........G......A.T.......T.....T................G..TT.G..G..A...................T...........A.................G...........G.............A............C.A..A....A...........................G.............G. 25 23 , 25 23 50:>KF790027,A/Massachusetts/07/2013(H3N2) 51 >KF789585,A/Florida/46/2012(H3N2) ...........C....T...A....G......A.T.......T.....T................G..T..G..G..A...................T...........A.................G...........G..........................C....A....A...........................G.............G. 22 22 , 22 22 51:>KF789585,A/Florida/46/2012(H3N2) 52 >KF789889,A/Wisconsin/51/2012(H3N2) ................T...A....G......A.T.......T.....T................G..T..G..G..A...................T...........A.................G...........G..........................C....A....A...........................G.............G. 21 21 , 21 21 52:>KF789889,A/Wisconsin/51/2012(H3N2) 53 >KF789895,A/New Hampshire/21/2012(H3N2) ................T...A....G......A.T.......T.....T................G..T..G..G..A...................T...........A.................G...........G..........................C....A....A...........................G.............G. 22 21 , 22 21 53:>KF789895,A/New Hampshire/21/2012(H3N2) 54 >KF790411,A/Massachusetts/05/2013(H3N2) ................T........G......A.T.......T.....T................G..T..G..G..A...................T...........A.................G...........G.............A............C....A....A...........................G.............G. 21 21 , 21 21 54:>KF790411,A/Massachusetts/05/2013(H3N2) 55 >KF790310,A/Massachusetts/04/2013(H3N2) ................T........G......A.T.......T.....T................G..T..G..G..A...................T...........A.................G...........G.............A............C....A....A...........................G.............G. 23 21 , 23 21 55:>KF790310,A/Massachusetts/04/2013(H3N2) 56 >KF790482,A/Florida/09/2013(H3N2) ................T........G......A.T.......T.....T................G..T..G..G..A...................T...........A.................G...........G.............A............C....G....A...........................G.............G. 22 21 , 22 21 56:>KF790482,A/Florida/09/2013(H3N2) 57 >KF789954,A/Rhode Island/02/2013(H3N2) ................T........G......A.T.............T...............TG..T..G..G..A...................T.......C...A.................G...........G.............A............C....G....A...........................G.............G. 23 22 , 23 22 57:>KF789954,A/Rhode Island/02/2013(H3N2) 58 >KF789731,A/New Mexico/06/2013(H3N2) ................T........G......A.T.............T...............TG..T..G..G..A...................T...........A.................G...........G.............A............C....G....A...........................G.............G. 21 21 , 21 21 58:>KF789731,A/New Mexico/06/2013(H3N2) 59 >KF790148,A/Arkansas/03/2013(H3N2) ................T........GG.....A.T.............T................G..T..G..G..A...................T...........A.................G...........G.............A............C....G....A...........................G.....T.......G. 22 22 , 22 22 59:>KF790148,A/Arkansas/03/2013(H3N2) 60 >KF790144,A/Arkansas/13/2013(H3N2) ................T........GG.....A.T.............T................G..T..G..G..A...................T...........A.................G...........G.............A............C....G....A...........................G.....T.......G. 23 22 , 23 22 60:>KF790144,A/Arkansas/13/2013(H3N2) 61 >KF790136,A/Arkansas/07/2013(H3N2) ................T........GG.....A.T.............T................G..T..G..G..A...................T...........A.................G...........G.............A............C....G....A...........................G.....T.......G. 22 22 , 22 22 61:>KF790136,A/Arkansas/07/2013(H3N2) 62 >KF789970,A/Arkansas/06/2013(H3N2) ................T........GG.....A.T.............T................G..T..G..G..A...................T.........Y.A.................G...........G.............A............C....G....A...........................G.....T.......G. 24 23 , 24 23 62:>KF789970,A/Arkansas/06/2013(H3N2) 63 >KF789975,A/Arkansas/04/2013(H3N2) ................T........GG.....A.T.............T................G..T..G..G..A...................T...........A.................G...........G.............A............C....G....A...........................G.....T.......G. 22 22 , 22 22 63:>KF789975,A/Arkansas/04/2013(H3N2) 64 >KF789560,A/Florida/06/2013(H3N2) ................T........G......A.T.............T................G..T..G..G..A...................T...........A.................G...........G.............A............C....A....A...........................G.............G. 20 20 , 20 20 64:>KF789560,A/Florida/06/2013(H3N2) 65 >KF790362,A/New York/06/2013(H3N2) ................T........G......A.T.............T......A.........G..T..G..G..A...................T...........A.................G...........G.............A............C....A....A...........................G.............G. 21 21 , 21 21 65:>KF790362,A/New York/06/2013(H3N2) 66 >KF790302,A/New Jersey/02/2013(H3N2) ................T........G......A.T.............T................G..T..G..G..A...................T...........A.................G...........G.............A............C....A....A...........................G.............G. 20 20 , 20 20 66:>KF790302,A/New Jersey/02/2013(H3N2) 67 >KF790404,A/Iowa/02/2013(H3N2) ................T........G......A.T.............T................G..T..G..G..A...................C...........AR................G...........G.............A............C....A....A..........A................G.............G. 23 22 , 23 22 67:>KF790404,A/Iowa/02/2013(H3N2) 68 >KF789635,A/Texas/09/2013(H3N2) ................T........G......A.T.............T................G..T..G..G..A...................T...........AG................G...........G.............A............C....A....A...........................G.............G. 21 21 , 21 21 68:>KF789635,A/Texas/09/2013(H3N2) 69 >KF789842,A/North Carolina/06/2013(H3N2) ................T........G......A.T.............T................G..T..G..G..A...................T...........AG................G...........G.............A............C....A....A...........................G.............G. 21 21 , 21 21 69:>KF789842,A/North Carolina/06/2013(H3N2) 70 >KF790147,A/Texas/14/2013(H3N2) ................T........G......A.T.............T................G..T..G..G..A..C................T...........AG................G...........G.............A............C....A....A..........................GG.............G. 24 23 , 24 23 70:>KF790147,A/Texas/14/2013(H3N2) 71 >KF789965,A/Massachusetts/12/2013(H3N2) ................T........G......A.T.............T................G..T..G..G..A..C................T...........A.................G...........G.............A............C....A....A..................T........G.............G. 24 22 , 24 22 71:>KF789965,A/Massachusetts/12/2013(H3N2) 72 >KF790297,A/Massachusetts/13/2013(H3N2) .........C......T........G......A.T.............T................G..T..G..GC.A..C................T...........A.................G.........C.G.............A............C....A....A...........................G.............G. 25 24 , 25 24 72:>KF790297,A/Massachusetts/13/2013(H3N2) 73 >KF789849,A/Utah/07/2013(H3N2) ................T........G......A.T.............T................G..T..G..GC.A..C................T...........A.................G...........G.........T...A............C....A....A...........................G.............G. 23 23 , 23 23 73:>KF789849,A/Utah/07/2013(H3N2) 74 >KF790427,A/Missouri/05/2013(H3N2) ................T........G......A.T.............T................G..T..G..G..A...................T...........A.................G...........G.........A...A............C....A....AT..........................G.............G. 22 22 , 22 22 74:>KF790427,A/Missouri/05/2013(H3N2) 75 >KF790384,A/New Mexico/24/2012(H3N2) ................T........G......A.T.............T................G..T..G..G..A...................T...........AG................G...........G..........................C....A....AT..........................G.............G. 21 21 , 21 21 75:>KF790384,A/New Mexico/24/2012(H3N2) 76 >KF790137,A/Oklahoma/03/2013(H3N2) ................T........G......A.T.............T.........T......G..T..G..G..A...G...............T...........AG................G...........G..........................C....A..C.A...........................G.............G. 24 23 , 24 23 76:>KF790137,A/Oklahoma/03/2013(H3N2) 77 >KF790129,A/Virginia/06/2013(H3N2) C.......T.......T........G......A.T.............T.........T......G..T..G..G..A...................T...........A..T..............G...........G..........................C....A..C.A..................T........G.............G. 25 25 , 25 25 77:>KF790129,A/Virginia/06/2013(H3N2) 78 >KF790119,A/Louisiana/04/2013(H3N2) ................T.A......G......A.T.............T.........T......G..T..G..G..A...................T...........A.................G...........G..........................C....A..C.A...........................G.............G. 26 22 , 26 22 78:>KF790119,A/Louisiana/04/2013(H3N2) 79 >KF790201,A/North Carolina/01/2013(H3N2) .........................G......A.T.............T.........T.....TG..T..G..G..A...................T...........A.................G...........G..........................C....A..C.A...........................G.............G. 22 21 , 22 21 79:>KF790201,A/North Carolina/01/2013(H3N2) 80 >KF789829,A/Connecticut/13/2012(H3N2) ................T........G......A.T.............T...............T...T..G..G..A...................T...........A.................G..........AG........C.................C....A....A......C....................G.............G. 22 22 , 22 22 80:>KF789829,A/Connecticut/13/2012(H3N2) 81 >KF790118,A/Alaska/03/2013(H3N2) ................T........G.C....A.T.............T................GG.T..G..G..A...................T...........A....G............G...........G........C.................C....A....A...........................G.............G. 24 23 , 24 23 81:>KF790118,A/Alaska/03/2013(H3N2) 82 >KF789562,A/Massachusetts/06/2013(H3N2) ................T........G.C....A.T.............T................GG.T..G..G..A...................T...........A.................G...........G........C.................C....A....A...........................G.............G. 22 22 , 22 22 82:>KF789562,A/Massachusetts/06/2013(H3N2) 83 >KF789891,A/Kansas/16/2012(H3N2) ................T........G......A.T.............T................G..T..G..G..A...................T...........A.................G...........G........C.................C....A....A...........................G.............G. 20 20 , 20 20 83:>KF789891,A/Kansas/16/2012(H3N2) 84 >KF790053,A/Wyoming/01/2013(H3N2) ................T........G......A.T.............T................G..T..G..G..A...................T...........A.................G...........G........C.................C....A....A...........................G..........S..G. 22 21 , 22 21 84:>KF790053,A/Wyoming/01/2013(H3N2) 85 >KF790225,A/Texas/82/2012(H3N2) ................T........G......A.T.............T................G..T..G..G..A...................T...........A.................G...........G..........................C....A....A...........................G.............G. 19 19 , 19 19 85:>KF790225,A/Texas/82/2012(H3N2) 86 >KF790414,A/Nebraska/03/2013(H3N2) ................T........G......A.T.............T................G..T..G..G..A...................T...........A.................G...........G..........................C....A....A...........................G.............G. 21 19 , 21 19 86:>KF790414,A/Nebraska/03/2013(H3N2) 87 >KF790311,A/Nebraska/15/2012(H3N2) ................T........G......A.T.............T................G..T..G..G..A...................T...........A.................G...........G..........................C....A....A...........................G.............G. 19 19 , 19 19 87:>KF790311,A/Nebraska/15/2012(H3N2) 88 >KF789810,A/Iowa/22/2012(H3N2) ................T........G......A.T.............T................G..T..G..G..A...................T...........A.................G.T.........G..........................C....A....A...........................G.............G. 20 20 , 20 20 88:>KF789810,A/Iowa/22/2012(H3N2) 89 >KF789966,A/Rhode Island/06/2013(H3N2) ................T........G......A.T.............T................G..T..G..G..A.........G....A....T...........A.................A.T.........G..........................C....A....A...........................G............... 23 21 , 23 21 89:>KF789966,A/Rhode Island/06/2013(H3N2) 90 >KF790180,A/New York/37/2012(H3N2) ................T........G......A.T.............T................G..T..G..G..A.........G.........T...........A.................A.T.........G..........................C....A....A...........................G.............G. 21 21 , 21 21 90:>KF790180,A/New York/37/2012(H3N2) 91 >KF789958,A/West Virginia/01/2013(H3N2) ................T........G......A.T.............TY...............G..T..G..G..A.........GR........T...........A.................A.T.........G..........................C....A....A...........................G.............G. 23 23 , 23 23 91:>KF789958,A/West Virginia/01/2013(H3N2) 92 >KF790258,A/New York/39/2012(H3N2) ................T........G......A.T.............T................G..T..G..G..A.........G.........T...........A.................A.T.........G..........................C....A....A...........................G.............G. 21 21 , 21 21 92:>KF790258,A/New York/39/2012(H3N2) 93 >KF789872,A/Hawaii/02/2013(H3N2) ................T........G......A.T.............T................G..T..G..G..A.........G.........T.........T.AG................A.T.........G..........................C....A....A...........................G.............G. 23 23 , 23 23 93:>KF789872,A/Hawaii/02/2013(H3N2) 94 >KF790224,A/Rhode Island/08/2012(H3N2) ................T........G......A.T.............T................G..T..G..G..A.........G.........T...........A.................A.T.........G..........................C....A....A...........................G.............G. 21 21 , 21 21 94:>KF790224,A/Rhode Island/08/2012(H3N2) 95 >KF790277,A/New York/39/2012(H3N2) ................T........G......A.T.............T................G..T..G..G..A.........G...K.....T......M....A.................A.T.........G..........................C....A....A...........................G.............G. 24 23 , 24 23 95:>KF790277,A/New York/39/2012(H3N2) 96 >KF789774,A/Massachusetts/11/2013(H3N2) ................T........G......A.T...........A.T................G..T..G..G..A...................T...........A.................G...........G.......G..................C....A....A...........................G.............G. 22 21 , 22 21 96:>KF789774,A/Massachusetts/11/2013(H3N2) 97 >KF790232,A/Iowa/14/2012(H3N2) ................T........G......A.T.............T................G..T..G..G..A...................T...Y.......A.................G...........G..........................C....A....A...........................G.............G. 20 20 , 20 20 97:>KF790232,A/Iowa/14/2012(H3N2) 98 >KF789841,A/New Jersey/03/2013(H3N2) ................T........G......A.T.............T................G..T..G..G..A..............A....T...........A.................G...........G..........................C....A....A...........................G.............G. 20 20 , 20 20 98:>KF789841,A/New Jersey/03/2013(H3N2) 99 >KF790416,A/Iowa/01/2013(H3N2) ................T........G......A.T.............T........A.......G..T..G..G..A...................T...........A.................G...........G..........................C....A....A...........................G.............G. 21 20 , 21 20 99:>KF790416,A/Iowa/01/2013(H3N2) 100 >KF790248,A/Iowa/15/2012(H3N2) ................T........G......A.T.............T................G..T..G..G..A...................T...........A.................G...........G..........................C....A....A...........................G.............G. 19 19 , 19 19 100:>KF790248,A/Iowa/15/2012(H3N2) 101 >KF790459,A/North Dakota/01/2013(H3N2) ..........T.....T........G......A.T.............T................G..T..G..G..A...................T...........A.................G...........G..........................C....A....A...........................G.............G. 21 20 , 21 20 101:>KF790459,A/North Dakota/01/2013(H3N2) 102 >KF790483,A/West Virginia/11/2013(H3N2) .........A......T........G......A.T.............T................G..T..G..G..A...................T...........A.................G...........G..........................C....A....A........G..C...............G.............G. 22 22 , 22 22 102:>KF790483,A/West Virginia/11/2013(H3N2) 103 >KF789974,A/West Virginia/05/2013(H3N2) .........A......T........G......A.T.............T................G..T..G..G..A...................T...........A.................G...........G..........................C....A....A........G..C...............G.............G. 22 22 , 22 22 103:>KF789974,A/West Virginia/05/2013(H3N2) 104 >KF789858,A/West Virginia/10/2013(H3N2) .........A......T........G......A.T.............T................G..T..G..G..A...................T...........A.................G...........G..........................C....A....A........G..C...............G.............G. 22 22 , 22 22 104:>KF789858,A/West Virginia/10/2013(H3N2) 105 >KF789978,A/West Virginia/06/2013(H3N2) .........A......T........G......A.T.............T................G..T..G..G..A...................T...........A.................G...........G..........................C....A....A........G..C...............G.............G. 22 22 , 22 22 105:>KF789978,A/West Virginia/06/2013(H3N2) 106 >KF790419,A/New York/60/2012(H3N2) ................T........G......A.T.............T................G..T..G..G..A...................T...........A.................G...........G..........................C....A....A...........................G.............G. 19 19 , 19 19 106:>KF790419,A/New York/60/2012(H3N2) 107 >KF789736,A/Montana/03/2013(H3N2) ................T........G......A.T.............T................G..T..G..G..A...................T...........A...............C.G...........G..........................C....A....A...........................G.............G. 22 20 , 22 20 107:>KF789736,A/Montana/03/2013(H3N2) 108 >KF789770,A/North Carolina/28/2012(H3N2) ................T........G......A.T.............T................G..TK.G..G..A...................T...........A...............C.G...........G..........................C....A....A...........................G.............G. 22 21 , 22 21 108:>KF789770,A/North Carolina/28/2012(H3N2) 109 >KF790339,A/Delaware/06/2013(H3N2) ................T...............A.T.............T................G..TK.G..G..A....G..............T...........A.................G...........G..........................C..G.A....A.A.........................G.............G. 24 22 , 24 22 109:>KF790339,A/Delaware/06/2013(H3N2) 110 >KF789637,A/Idaho/24/2012(H3N2) ................T...............A.T.............T................G..T..G..G..A....G..............T...........A.................G...........G..........................C..G.A....A.A.........................G.............G. 21 21 , 21 21 110:>KF789637,A/Idaho/24/2012(H3N2) 111 >KF789828,A/Idaho/38/2012(H3N2) ................T...............A.T.............T................G..T..G..G..A....G..............T...........AR................G...........G..........................C..G.A....A.A.........................G.............G. 23 22 , 23 22 111:>KF789828,A/Idaho/38/2012(H3N2) 112 >KF789541,A/Colorado/02/2013(H3N2) ................T...............A.T.............T................G..T..G..G..A....G..............T...........A.................G...........G..........................C..G.A....A.A.........................G.............G. 21 21 , 21 21 112:>KF789541,A/Colorado/02/2013(H3N2) 113 >KF790127,A/Colorado/27/2012(H3N2) ................T...............A.T.............T................G..T..G..G..A.T..G..............T...........A.................G...........G.........M................C..G.A....A.A.........................G.............G. 23 23 , 23 23 113:>KF790127,A/Colorado/27/2012(H3N2) 114 >KF789544,A/Washington/06/2013(H3N2) ................T...............A.T.............T................G..T..G..G..A....G..............T...........A.................G...........G..........................C..G.A....A.A.........................G.............G. 21 21 , 21 21 114:>KF789544,A/Washington/06/2013(H3N2) 115 >KF790418,A/New Hampshire/03/2013(H3N2) ................TA..............A.T.............T................G..T..G..G..A....G..............T...........A.................G...........G..........................C..G.A....A.A.........................G.............G. 23 22 , 23 22 115:>KF790418,A/New Hampshire/03/2013(H3N2) 116 >KF789627,A/California/16/2013(H3N2) ................T...............A.T.............T................G..T..G..G..A....G..............T...........A.................G...........G..........................C..G.A....A.A.........................G.............G. 21 21 , 21 21 116:>KF789627,A/California/16/2013(H3N2) 117 >KF789847,A/Washington/07/2013(H3N2) ................T...............A.T.............T................G..T..G..G..A....G..............T...........A.................G...........G..........................C..G.A....A.A.........................G.............G. 23 21 , 23 21 117:>KF789847,A/Washington/07/2013(H3N2) 118 >KF789753,A/Washington/60/2012(H3N2) ................T...............A.T.............T................G..T..G..G..A....G..............T...........A.................G...........G..........................C..G.A....A.A.........................G.............G. 21 21 , 21 21 118:>KF789753,A/Washington/60/2012(H3N2) 119 >KF789799,A/Idaho/37/2012(H3N2) ................T...............A.T.............T................G..T..G..G..A....G..............T...........A.................G...........G..........................C..G.A....A.A.........................G.............G. 24 21 , 24 21 119:>KF789799,A/Idaho/37/2012(H3N2) 120 >KF789947,A/Alaska/01/2013(H3N2) ................T...............A.T.............T................G..T..G..G..A....G..............T...........A.................G...........G..........................C..G.A....A.A.........................G.............G. 21 21 , 21 21 120:>KF789947,A/Alaska/01/2013(H3N2) 121 >KF790527,A/Minnesota/17/2012(H3N2) ................T...............A.T.............T..........T.....G..T..G..G..A....G..............T...........A.................G...........G..........................C..G.A....A.A.........................G.............G. 22 22 , 22 22 121:>KF790527,A/Minnesota/17/2012(H3N2) 122 >KF790348,A/Utah/03/2013(H3N2) ................T...............A.T.............T................G..T..G..G..A....G..............T...........A.................G...........G..........................C..G.A....A.A.........................G.............G. 21 21 , 21 21 122:>KF790348,A/Utah/03/2013(H3N2) 123 >KF790503,A/Nevada/03/2013(H3N2) ................T...............A.T.............T................G..T..G..G..A....G..............T...........A.................G...........G..........................C..G.A....A.A.............T...........G.............G. 23 22 , 23 22 123:>KF790503,A/Nevada/03/2013(H3N2) 124 >KF790329,A/Nevada/36/2012(H3N2) ................T...............A.T.............T................G..T..G..G..A....G..............T...........A.................G...........G..........................C..G.A....A.A.............T...........G.............G. 22 22 , 22 22 124:>KF790329,A/Nevada/36/2012(H3N2) 125 >KF789915,A/Delaware/24/2012(H3N2) ................T...............A.T.............T................G..T..G..G..A....G..............T...........A.................G...........G..........................C..G.A....A.A.........................G.............G. 21 21 , 21 21 125:>KF789915,A/Delaware/24/2012(H3N2) 126 >KF790065,A/Minnesota/01/2013(H3N2) C...............T...............A.T.............T................G..T..G..G..A....G..............T...........A.................G...........G..........................C..G.A....A.A.........................G.....A.......G. 23 23 , 23 23 126:>KF790065,A/Minnesota/01/2013(H3N2) 127 >KF789957,A/Montana/01/2013(H3N2) ................T...............A.T.............T................G..T..G..G..A....G..............T...........A.................G...........G..........................C..G.A....A.A.........................G.............G. 21 21 , 21 21 127:>KF789957,A/Montana/01/2013(H3N2) 128 >KF790214,A/Idaho/23/2012(H3N2) ................T...............A.T.............T................G..T..G..G..A....G..............T...........A.................G...........G..........................C..G.A....A.A.........................G.............G. 21 21 , 21 21 128:>KF790214,A/Idaho/23/2012(H3N2) 129 >KF790330,A/Maryland/01/2013(H3N2) ................T...............A.T.............T................G..T..G..G..A....G..............T...........A.................G...........G..........................C..G.A....A.A.........................G.............G. 23 21 , 23 21 129:>KF790330,A/Maryland/01/2013(H3N2) 130 >KF790001,A/Washington/50/2012(H3N2) ................T...............A.T.............T................G..T..G..G..A....G..............T...........A.................G...........G..........................C..G.A....A.A.........................G.............G. 21 21 , 21 21 130:>KF790001,A/Washington/50/2012(H3N2) 131 >KF790077,A/Oregon/15/2012(H3N2) ................T...............A.T.............T................G..T..G..G..A....G..............T...........A.................G...........G......C...................C..G.A....A.A.........................G.............G. 22 22 , 22 22 131:>KF790077,A/Oregon/15/2012(H3N2) 132 >KF789818,A/Washington/61/2012(H3N2) ................T...............A.T.............T................G..T..G..G..A....G..............T...........A.................G...........G..........................C..G.A....A.A.........................G.............G. 21 21 , 21 21 132:>KF789818,A/Washington/61/2012(H3N2) 133 >KF790438,A/Utah/27/2012(H3N2) ................T...............A.T.............T................G..T..G..G..A....G..............T...........A.................G...........G..................A.......C..G.A....A.A.........................G.............G. 22 22 , 22 22 133:>KF790438,A/Utah/27/2012(H3N2) 134 >KF789590,A/Nevada/27/2012(H3N2) ................T...............A.T.............T................G..T..G..G..A....G..............T...........A.................G...........G..........................C..G.A....A.A.........................G.............G. 21 21 , 21 21 134:>KF789590,A/Nevada/27/2012(H3N2) 135 >KF790331,A/Washington/04/2013(H3N2) ................T...............A.T.............T................G..T..G..G..A....G..............T...........A.................G...........G..........................C..G.A....A.A.........................G.............G. 22 21 , 22 21 135:>KF790331,A/Washington/04/2013(H3N2) 136 >KF789539,A/Michigan/01/2013(H3N2) ................T...............A.T.............T................G..T..G..G..A....G..............T...........A.................G...........G..........................C..G.A....A.A.........................G.............G. 21 21 , 21 21 136:>KF789539,A/Michigan/01/2013(H3N2) 137 >KF790516,A/Washington/53/2012(H3N2) ................T...............A.T.............T................G..T..G..G..A....G..............T...........A.................G...........G..........................C..G.A....A.A.........................G.............G. 22 21 , 22 21 137:>KF790516,A/Washington/53/2012(H3N2) 138 >KF790307,A/Missouri/02/2013(H3N2) ................T...............A.T.............T................G..T..G..G..A....G..............T...........A.................G...........G..........................C..G.A....A.A.........................G.............G. 21 21 , 21 21 138:>KF790307,A/Missouri/02/2013(H3N2) 139 >KF790076,A/Nebraska/02/2013(H3N2) ................T...............A.T.............T................G..T..G..G..A....G.............GT...........A.................G...........G.................T........C..G.A....A.A.........................G.............G. 24 23 , 24 23 139:>KF790076,A/Nebraska/02/2013(H3N2) 140 >KF789623,A/Kentucky/03/2013(H3N2) ................T........G......A.T.............T...........A....G..T..G..G..A..................GT...........A.................G......T....G..........................C....A....A...........................G.............G. 23 22 , 23 22 140:>KF789623,A/Kentucky/03/2013(H3N2) 141 >KF789597,A/Alabama/24/2012(H3N2) ................T........G......A.T.............T...........A....G..T..G..G..A..................GT...........A.................G......T....G..........................C....A....A...........................G.............G. 22 22 , 22 22 141:>KF789597,A/Alabama/24/2012(H3N2) 142 >KF790114,A/Alabama/17/2012(H3N2) ................T........G......A.T.............T...........A....G..T..G..G..A..................GT...........A.................G......T....G..........................C....A....A...........................G.............G. 22 22 , 22 22 142:>KF790114,A/Alabama/17/2012(H3N2) 143 >KF789600,A/Montana/13/2012(H3N2) ................T........G......A.T.............T...........A....G..T..G..G..A..................GT...........A.................G......T....G..........................C....A....A...........................G.............G. 23 22 , 23 22 143:>KF789600,A/Montana/13/2012(H3N2) 144 >KF790351,A/Kentucky/01/2013(H3N2) ................T........G......A.T.............T...........A....G..T..G..G..A..................GT...........A.................G......T....G..........................C....A....A...........................G.............G. 22 22 , 22 22 144:>KF790351,A/Kentucky/01/2013(H3N2) 145 >KF790257,A/Alabama/18/2012(H3N2) ................T........G......A.T.............T...........A....G..T..G..G..A..................GT...........A.................G......T....G..........................C....A....A...........................G.............G. 23 22 , 23 22 145:>KF790257,A/Alabama/18/2012(H3N2) 146 >KF789662,A/Alabama/17/2012(H3N2) ................T........G......A.T.............T...........A....G..T..G..G..A..................GT...........A.................G......T....G..........................C....A....A...........................G.............G. 22 22 , 22 22 146:>KF789662,A/Alabama/17/2012(H3N2) 147 >KF789949,A/New York/04/2013(H3N2) ......C.........T........G......A.T.............T...........A....G..T..G..G..A...................T...........A.................G...........G.............A............C....A....A...........................G.........T...G. 23 23 , 23 23 147:>KF789949,A/New York/04/2013(H3N2) 148 >KF789879,A/Virginia/03/2013(H3N2) ................T........G......A.T.............T................G..T..G..G..A...................T...........A.................G...........G.............A............C....A....A...........................G.............G. 20 20 , 20 20 148:>KF789879,A/Virginia/03/2013(H3N2) 149 >KF790010,A/Wisconsin/08/2013(H3N2) ................T........G......A.T.............T....C...........G..T..G..G..A...................T...........A.................G...........G.............A............C....A....A...........................G.............G. 22 21 , 22 21 149:>KF790010,A/Wisconsin/08/2013(H3N2) 150 >KF790389,A/Minnesota/04/2013(H3N2) ................T........G......A.T.............T................G..T..G..G..A...................T...........A.................G...........G.............A............C....A....A...........................G.............G. 22 20 , 22 20 150:>KF790389,A/Minnesota/04/2013(H3N2) 151 >KF789968,A/Florida/21/2013(H3N2) ................T........G......A.T.............T................G..T..G..G..A......A............T...........A.................G...........G.............A............C....A....A...........................G.............G. 22 21 , 22 21 151:>KF789968,A/Florida/21/2013(H3N2) 152 >KF790032,A/Florida/08/2013(H3N2) ................T........G......A.T.............T................G..T..G..G..A...................T...........A.................G...........G.............A............C....A....A...........................G.............G. 20 20 , 20 20 152:>KF790032,A/Florida/08/2013(H3N2) 153 >KF790037,A/North Dakota/02/2013(H3N2) ................T........G......A.T.............T................G..T..G..G..A...................T...........A.................G...........G.............A............C....A....A.A..............C..........G.............G. 22 22 , 22 22 153:>KF790037,A/North Dakota/02/2013(H3N2) 154 >KF789840,A/California/18/2013(H3N2) ................T........G......A.T.............T................G..T..G..G..A...................T...........A.................G...........G.............A............C....A....A................C..........G.............G. 21 21 , 21 21 154:>KF789840,A/California/18/2013(H3N2) 155 >KF789874,A/Massachusetts/15/2012(H3N2) ................T........G......A.T.............T................G..T..G..G..A...................T...........A.................G...........G.............A............C....A....A...........................G.............G. 21 20 , 21 20 155:>KF789874,A/Massachusetts/15/2012(H3N2) 156 >KF789888,A/New Jersey/05/2013(H3N2) ............G...T........G......A.T.............T................G..T..G..G..A...................T...........A.................G...........G.............A............C....A....A...........................G.............G. 21 21 , 21 21 156:>KF789888,A/New Jersey/05/2013(H3N2) 157 >KF790256,A/Pennsylvania/20/2012(H3N2) ................T........G......A.T.............T................G..T..G..G..A...................T...........A.................G...........G.............A............C....A....A...........................G.............G. 20 20 , 20 20 157:>KF790256,A/Pennsylvania/20/2012(H3N2) 158 >KF790403,A/Delaware/08/2013(H3N2) ................T........G......A.T.............T................G..T..G..G..A...................T...........A.................G...........G.............A............C....A....A...........................G.............G. 21 20 , 21 20 158:>KF790403,A/Delaware/08/2013(H3N2) 159 >KF789822,A/New York/47/2012(H3N2) ................T........G......A.T.............T................G..T..G..G..A...................T...........A.................G...........G.............A............C....A....A...........................G.............G. 20 20 , 20 20 159:>KF789822,A/New York/47/2012(H3N2) 160 >KF789630,A/Wyoming/03/2013(H3N2) ................T.A......G......A.T.............T................G..T..G..G..A...................T...........A.................G...........G.............A............C....A....A...........................G.............G. 21 21 , 21 21 160:>KF789630,A/Wyoming/03/2013(H3N2) 161 >KF790039,A/New York/05/2013(H3N2) ................T........G......A.T.............T................G..T..G..G..A...................T...........A.................G...........G.............A............C....A....A.........T...............A.G.............G. 22 22 , 22 22 161:>KF790039,A/New York/05/2013(H3N2) 162 >KF789660,A/Maryland/06/2013(H3N2) ................T........G......A.T.............T................G..T..G..G..A...................T.........T.A.................G...........G..........................C....A....A.........T.................G.............G. 24 21 , 24 21 162:>KF789660,A/Maryland/06/2013(H3N2) 163 >KF789591,A/New Jersey/04/2012(H3N2) ................T........G......A.T.............T.T.................T..G..G..A...................T...........A.................G...........G..........................C....A....A...........................GA.......C....G. 21 21 , 21 21 163:>KF789591,A/New Jersey/04/2012(H3N2) 164 >KF789671,A/New Jersey/08/2012(H3N2) ................T........G......A.T.............T...................T..G..G..A...................T...........A.................G...........G.............A............C....A....A...........................G.............G. 20 19 , 20 19 164:>KF789671,A/New Jersey/08/2012(H3N2) 165 >KC892601,A/Alaska/04/2012(H3N2) ................T..G.....G......A.T.............T..................TT.....G.GA...................T...........A.................G...........G..........................C....A...G..................T.........G.............G. 21 21 , 21 21 165:>KC892601,A/Alaska/04/2012(H3N2) 166 >KF790088,A/Alaska/04/2012(H3N2) ................T..G.....G......A.T.............T..................TT.....G.GA.............T.....T...........A........G........G...........G..........................C....A...G..................T.........G.............G. 24 23 , 24 23 166:>KF790088,A/Alaska/04/2012(H3N2) 167 >KF790275,A/Arizona/09/2012(H3N2) ................T........G..C...A.T........T....T...................T.....G..A.............TT....T...........A.....A..S........G...A.......G......C...................C....A................................G.............G. 24 24 , 24 24 167:>KF790275,A/Arizona/09/2012(H3N2) 168 >KF790270,A/Arizona/09/2012(H3N2) ................T........G..C...A.T........T....T...................T.....G..A..............T....T...........A.....A...........G...A.......G......C...................C....A................................G.............G. 22 22 , 22 22 168:>KF790270,A/Arizona/09/2012(H3N2) 169 >KF790286,A/Indiana/161/2012(H3N2) ................T........G..C...A.T........T....T...................T.....G..A..............T....T...........AG....A...........G...A.......G......C...................C....A................................G.............G. 24 23 , 24 23 169:>KF790286,A/Indiana/161/2012(H3N2) 170 >KF789871,A/Michigan/02/2013(H3N2) ................T........G......A.T........T....T...................TT....GC.A........C..........T...........AG....A...........G...A.......G......C...................C....A................................GA............G. 26 25 , 26 25 170:>KF789871,A/Michigan/02/2013(H3N2) 171 >KF790011,A/Oklahoma/08/2013(H3N2) ................T........G......A.T........T....T...................T.....G..A........C..........T...........A.....A...........G...A.......G......C...................C....A................................G.............G. 23 21 , 23 21 171:>KF790011,A/Oklahoma/08/2013(H3N2) 172 >KF790345,A/Indiana/01/2013(H3N2) ................T........G......A.T........T....T...................T.....G..A........C..........T...........A.....A...........G...A.......G......C...................C....A................................G.............G. 22 21 , 22 21 172:>KF790345,A/Indiana/01/2013(H3N2) 173 >KF789998,A/Montana/10/2012(H3N2) ................T........G......A.T........T....T...................T.....G..A...................T...........A.....A...........G...A.......G......C...........A.......C....A.............G..................G.............G. 22 22 , 22 22 173:>KF789998,A/Montana/10/2012(H3N2) 174 >KF789613,A/North Carolina/04/2013(H3N2) ................T....G...G......A.T........T....T...................T.....G..A...................T...........A.....A...........G...A.......G......C...................C....A................................G.............G. 22 21 , 22 21 174:>KF789613,A/North Carolina/04/2013(H3N2) 175 >KF790378,A/Alaska/05/2013(H3N2) ................T........G......A.T........T....T...................T.....G..A...................T...G.......A.....A...........G...A.......G......C...................C....A................................G.............G. 21 21 , 21 21 175:>KF790378,A/Alaska/05/2013(H3N2) 176 >KF790109,A/Delaware/10/2012(H3N2) ................T........G......A.T........T....T...................T.....G..A.......T...........T...........A.....A...........G...A.......G......C...................C....A................................G.............G. 21 21 , 21 21 176:>KF790109,A/Delaware/10/2012(H3N2) 177 >KF790429,A/Delaware/11/2012(H3N2) ................T........G......A.T........T....T...................T.....G..A.......T...........T...........A.....A...........G...A.......G......C...................C....A................................G.............G. 21 21 , 21 21 177:>KF790429,A/Delaware/11/2012(H3N2) 178 >KF789701,A/Delaware/01/2013(H3N2) ................T........G......A.T........T....T...................T.....G..A.......T...........T...........A.....A...........G...A.......G......C...................C....A................................G.............G. 21 21 , 21 21 178:>KF789701,A/Delaware/01/2013(H3N2) 179 >KF790440,A/Delaware/15/2012(H3N2) ................T........G......A.T........T....T...................T.....G..A.......T...........T...........A.....A...........G...A.......G......C...................C....A................................G.............G. 21 21 , 21 21 179:>KF790440,A/Delaware/15/2012(H3N2) 180 >KF789569,A/Alaska/06/2013(H3N2) ................T........G......A.T........T....T....C..............T.....G..A...................T...........A.....A...........G...A.......G......C...................C....A................................G.............G. 21 21 , 21 21 180:>KF789569,A/Alaska/06/2013(H3N2) 181 >KF790167,A/Washington/52/2012(H3N2) ................T........G......A.T........T....T....C..............T.....G..A...................T...........A.....A...........G...A.......G..........................C....A................................G.............G. 20 20 , 20 20 181:>KF790167,A/Washington/52/2012(H3N2) 182 >KF789780,A/Kansas/14/2012(H3N2) ................T........G......A.T........T....T...................T.....G..A...................T...........A.....A...........G...A.......G.G........................C....A................................G.............G. 20 20 , 20 20 182:>KF789780,A/Kansas/14/2012(H3N2) 183 >KF790464,A/Oklahoma/05/2013(H3N2) ................T........G......A.T........T....T...................T.....G..A...................T...........A.....A...........G...A.......G.G........................C....A................................G.............G. 20 20 , 20 20 183:>KF790464,A/Oklahoma/05/2013(H3N2) 184 >KF790360,A/Oklahoma/05/2013(H3N2) ................T........G......A.T........T....T...................T.....G..A.............T.....T......Y....A.....A...........G...A.......G.G........................C....A................................G.............G. 22 22 , 22 22 184:>KF790360,A/Oklahoma/05/2013(H3N2) 185 >KF790197,A/Florida/40/2012(H3N2) ................T........G......A.T........T....T..A................T.....G..A.A...........T.....T...........A.....A...........G...A.......G..........................C....A................................G.............G. 23 22 , 23 22 185:>KF790197,A/Florida/40/2012(H3N2) 186 >KF789661,A/Hawaii/24/2012(H3N2) ................T........G......A.T........T....T..A................T.....G..A...................T.........Y.A.....A...........G...A.......G..........................C....A................................G.............G. 22 21 , 22 21 186:>KF789661,A/Hawaii/24/2012(H3N2) 187 >KF790064,A/Vermont/28/2012(H3N2) ...G............T........G......A.T........T....T..A................T.....G..A.................C.T...........A.....A...........G...A.......G..........................C....A................................G.............G. 23 22 , 23 22 187:>KF790064,A/Vermont/28/2012(H3N2) 188 >KF790084,A/Vermont/28/2012(H3N2) ...G............T........G......A.T........T....T..A................T.....G..A...................T...........AR....A...........G...A.......G..........................C....A................................G.............G. 22 22 , 22 22 188:>KF790084,A/Vermont/28/2012(H3N2) 189 >KF789714,A/Texas/91/2012(H3N2) ................T........G......A.T........T....T.T.................T.....G..A...................T...........AG....A...........G...A.......G..........................C....A................................G.............G. 21 21 , 21 21 189:>KF789714,A/Texas/91/2012(H3N2) 190 >KF789614,A/Maryland/03/2013(H3N2) ................T........G......A.T........T....T...................T.....G..A...................T...........A.....A...........G...A.......G..........................C....A.................A..............G.............G. 21 20 , 21 20 190:>KF789614,A/Maryland/03/2013(H3N2) 191 >KF790356,A/Utah/02/2013(H3N2) ................T........G......A.T........T....T...................T.....G..A...................T...........A.....A...........G...A.......G..........................C....A................................G.............G. 20 19 , 20 19 191:>KF790356,A/Utah/02/2013(H3N2) 192 >KF790153,A/California/04/2013(H3N2) ................T........G......A.T........T....T...................T.....G..A...................T...........A.....A...........G...A.......G..........................C....A................................G.............G. 20 19 , 20 19 192:>KF790153,A/California/04/2013(H3N2) 193 >KF790457,A/New Mexico/05/2013(H3N2) ................T........G......A.T........T....T...................T.....G..A...................T...........A.....A...........G...A.......G..........................C....A................................G.............G. 19 19 , 19 19 193:>KF790457,A/New Mexico/05/2013(H3N2) 194 >KF789684,A/Rhode Island/09/2012(H3N2) ................T........G......A.T........T....T........A..........T.....G..A...................T.........M.A.....A...........G...A.......G..........................C....A................................G.............G. 21 21 , 21 21 194:>KF789684,A/Rhode Island/09/2012(H3N2) 195 >KF789547,A/Pennsylvania/03/2013(H3N2) ................T........G......A.T........T....T........A..........T.....G..A...................T...........A.....A.....A.....G...A.......G..........................C....A................................G.............G. 22 21 , 22 21 195:>KF789547,A/Pennsylvania/03/2013(H3N2) 196 >Index/32g12f1.c2,10-37 ................T........G......A.T........T....T...................T.....G..A...................T...........A.....A...........G...A.......G..........................C....A................................G.............G. 19 19 , 19 19 196:>Index/32g12f1.c2,10-37 197 >KF789752,A/Oregon/12/2012(H3N2) ................T........G......A.T........T....T...................T.....G..A...................T...........A.....A...........G...A.......G..........................C....A................................G.............G. 22 19 , 22 19 197:>KF789752,A/Oregon/12/2012(H3N2) 198 >KF790532,A/Maryland/05/2013(H3N2) .............A..T........G......A.T........T....T...................T..G..G..A...................T...........A.....A....A......G...A.......G..........................C....A................................G.............G. 22 22 , 22 22 198:>KF790532,A/Maryland/05/2013(H3N2) 199 >KF790316,A/District Of Columbia/02/2012(H3N2) .............A..T........G......A.T...C....T....T...................T..G..G..A...................T........A..A.....A....A......G...A.......G..........................C....A................................G.............G. 24 24 , 24 24 199:>KF790316,A/District Of Columbia/02/2012(H3N2) 200 >KF790361,A/Florida/12/2013(H3N2) .............A..T........G......A.T........T....T...................T.....G..A...................T...........A.....A....A......G...A.......G........C.................C....A................................G.............G. 22 22 , 22 22 200:>KF790361,A/Florida/12/2013(H3N2) 201 >KF789618,A/Nebraska/06/2013(H3N2) .............A..T........G......A.T........T....T...................T.....G..A...................T...........A.....A....A......G...A.......G..........................C....A................................G.............G. 22 21 , 22 21 201:>KF789618,A/Nebraska/06/2013(H3N2) 202 >KF790106,A/Kentucky/16/2012(H3N2) ......C......A..T........G......A.T........T....T...................T.....G..A...................T...........A.....A....A......G...A.......G..........................C....A................................G.............G. 22 22 , 22 22 202:>KF790106,A/Kentucky/16/2012(H3N2) 203 >KF790059,A/Texas/111/2012(H3N2) ................T........G......A.T........T....T...................T.....G..A...................T...........A.....A...........G...A.......G..........................C....A................................G.............G. 19 19 , 19 19 203:>KF790059,A/Texas/111/2012(H3N2) 204 >KF790060,A/Texas/81/2012(H3N2) ................T........G......A.T........T....T...................T.....G..A...................T...........A.....A...........G...A.......G.............A............C....A................................G.............G. 20 20 , 20 20 204:>KF790060,A/Texas/81/2012(H3N2) 205 >KF790448,A/California/42/2012(H3N2) ................T........G......A.T........T....T...................T.....G..A...................T...........A.....A...........G...A.......G.............A............C....A................................G.............G. 21 20 , 21 20 205:>KF790448,A/California/42/2012(H3N2) 206 >KF789535,A/California/15/2013(H3N2) ................T........G......A.T........T...AT...................T.G...G..A...................T...........A.....A...........G...A.......G..........................C....A................................G..A..........G. 22 22 , 22 22 206:>KF789535,A/California/15/2013(H3N2) 207 >KF789725,A/Montana/14/2012(H3N2) ................T........G......A.T........T...AT...................T.G...G..A...................T...........A.....A...........G...A.......G..........................C....A................................G..A..........G. 22 22 , 22 22 207:>KF789725,A/Montana/14/2012(H3N2) 208 >KF789982,A/New York/35/2012(H3N2) ................T........G......A.T........T....T...................T.....G..A...................T...........A.....A...........G...A.......G..........................C....A................................G.............G. 22 19 , 22 19 208:>KF789982,A/New York/35/2012(H3N2) 209 >KF790049,A/Texas/01/2013(H3N2) ................T........G......A.T.............T...................TT....G..A...................T...........A.....A...........G...A.......G..........................C....A................................G............... 18 18 , 18 18 209:>KF790049,A/Texas/01/2013(H3N2) 210 >KF790524,A/Maryland/33/2012(H3N2) ................T........G......A.T.............T...................T.....G..A...................T...........A.................G......T....G..................A.....A.C....A................................G.............G. 22 19 , 22 19 210:>KF790524,A/Maryland/33/2012(H3N2) 211 >KF790325,A/Delaware/07/2013(H3N2) ................T........G......T.T.............T...................T...A.G..A...................T...........AR................G...........G..........................C....A................................G.............G. 18 18 , 18 18 211:>KF790325,A/Delaware/07/2013(H3N2) 212 >KF789664,A/Maryland/29/2012(H3N2) ................T........G......A.T.............T...................T.....G..A...................T...........A.................G...........G..........................C....A...........................G....G.............G. 18 17 , 18 17 212:>KF789664,A/Maryland/29/2012(H3N2) 213 >Index/32g12f1.c2,38-41 ................T........G......A.T....A........T..............A....T.....G..A..............A....T...........A.................G...........G..........................C....A...............................GG.............G. 23 20 , 23 20 213:>Index/32g12f1.c2,38-41 214 >KF790138,A/North Carolina/02/2013(H3N2) ................T........G......A.T..G..........T...................T.....G..A...................T...........A.................G....C......G..........................C....A...............................GG.............G. 20 19 , 20 19 214:>KF790138,A/North Carolina/02/2013(H3N2) 215 >KF789615,A/Oklahoma/06/2013(H3N2) ................T........G......A.T...........A.T...................T.....G..A...................T...........A.................G....C......G..........................C....A...............................GG............GG. 20 20 , 20 20 215:>KF789615,A/Oklahoma/06/2013(H3N2) 216 >KF790019,A/New Mexico/08/2013(H3N2) ................T........G......A.T.............T...................T.....G..A...................T...........A.................G....C......G..........................C....A...............................GG............GG. 21 19 , 21 19 216:>KF790019,A/New Mexico/08/2013(H3N2) 217 >KF790398,A/District Of Columbia/01/2013(H3N2) ................T........G......A.T.............T...................T.....G..A...................T...........A.................G...........G.........................CC....A...............................GG.............G. 20 18 , 20 18 217:>KF790398,A/District Of Columbia/01/2013(H3N2) 218 >KF789571,A/Alabama/07/2013(H3N2) ................T........G...C..A.T.........C...T...................T.....G..A...................T.....A.....A.................G...........G.....G.G.T................C....A.A............................AGG...........A.G. 26 26 , 26 26 218:>KF789571,A/Alabama/07/2013(H3N2) 219 >KF789550,A/Nevada/04/2013(H3N2) ................T........G...C..A.T.........C...T...................T.....G..A...................T.....A.....A.........C.......G...........G.....G...T................C....A.A............................AGG...........A.G. 30 26 , 30 26 219:>KF789550,A/Nevada/04/2013(H3N2) 220 >KF789579,A/Indiana/164/2012(H3N2) ................T........G...C..A.T.............T...................T.....G..A...................T.....A.....A.........G.......G...........G.....G...T................C....A.A......................A.....AGG...........A.G. 26 26 , 26 26 220:>KF789579,A/Indiana/164/2012(H3N2) 221 >KF790244,A/Indiana/162/2012(H3N2) ................T........G...C..A.T.............T...................T.....G..A...................T.....A.....A.........G.......G...........G.....G...T................C....A.A......................A.....AGG...........A.G. 28 26 , 28 26 221:>KF790244,A/Indiana/162/2012(H3N2) 222 >KF790205,A/Colorado/18/2012(H3N2) ..........T.....T........G...C..A.T.............T...................T.....G..A.............T.....T.....A.....A.................G...........G.........T................C....A...............A..............AGG...........A.G. 26 25 , 26 25 222:>KF790205,A/Colorado/18/2012(H3N2) 223 >KF790104,A/Colorado/18/2012(H3N2) ..........T.....T........G...C..A.T.............T...................T.....G..A...................T.....A.....A.................G...........G.........T................C....A...............A..............AGG...........A.G. 24 24 , 24 24 223:>KF790104,A/Colorado/18/2012(H3N2) 224 >KF789582,A/North Carolina/24/2012(H3N2) ................T........G...C..A.T.............T...................T.....G..A...................T.....A.....A.................G...........G..........................C....A..............................AGG.............G. 22 20 , 22 20 224:>KF789582,A/North Carolina/24/2012(H3N2) 225 >KF790452,A/South Dakota/01/2013(H3N2) ..A.............T........G......A.T.......T.....T...................T.....G..A..........A........T.....A.....A.................G...........G..........................C....A.........T....................AGG...T......A..GA 26 26 , 26 26 225:>KF790452,A/South Dakota/01/2013(H3N2) 226 >KF789923,A/North Dakota/08/2012(H3N2) ..A.............T........G......A.T.......T.....T...................T.....G..A..........A........T.....A.....A.................G...........G..........................C....A.........T....................AGG...T..........A 25 24 , 25 24 226:>KF789923,A/North Dakota/08/2012(H3N2) 227 >KF790135,A/New York/03/2013(H3N2) ................T........G......A.T.......T.....T...................T.....G..A..........A........T.....A.....A.................G...........G..........................C....A.........T....................AGG...T........... 22 22 , 22 22 227:>KF790135,A/New York/03/2013(H3N2) 228 >KF789769,A/Ohio/102/2012(H3N2) ................T........G......A.T.......T.....T...................T.....G..A..........A........T.....A.....A.................G...........G..........................C....A.........T....................AGG...T.........G. 24 23 , 24 23 228:>KF789769,A/Ohio/102/2012(H3N2) 229 >KF789546,A/California/13/2013(H3N2) ................T........G......A.T.......T.....T...................T.....G..A..........A........T.....A.....A.................G...........G..........................C....A.........T....................AG....T.........G. 22 22 , 22 22 229:>KF789546,A/California/13/2013(H3N2) 230 >KF789689,A/Nebraska/11/2012(H3N2) ................T........G......A.T.......T.....T...................T.....G..A..........A........T.....A.....A.................G...........G..........................C....A.........T....................AGG...T.........G. 23 23 , 23 23 230:>KF789689,A/Nebraska/11/2012(H3N2) 231 >KF789722,A/Ohio/97/2012(H3N2) ................T........G......A.T.......T.....T...................T.....G..A..........A........T.....A.....A.....A...........G...........G..........................C....A.........T....................AGG...T.........G. 25 24 , 25 24 231:>KF789722,A/Ohio/97/2012(H3N2) 232 >KF789709,A/Missouri/04/2013(H3N2) ................T........G......A.T.......T.....T...................T.....G..A..........A........T.....A.....A.....A...........G...........G..........................C....A.........T....................AGG...T.........G. 24 24 , 24 24 232:>KF789709,A/Missouri/04/2013(H3N2) 233 >KF789605,A/West Virginia/20/2012(H3N2) ................T........G......A.T.......T.....T...................T.....G..A..........A........T.....A.....A.....A...........G...........G..........................C....A.........T.C..................AGG...T.........G. 25 25 , 25 25 233:>KF789605,A/West Virginia/20/2012(H3N2) 234 >KF790125,A/Missouri/04/2013(H3N2) ................T........G......A.T.......T.....T...................TT....G..A..........A......C.T.....A.....A.....A...........G...........G..........................C....A.........T....................AGG...T.........G. 26 26 , 26 26 234:>KF790125,A/Missouri/04/2013(H3N2) 235 >KF789728,A/North Carolina/05/2013(H3N2) ................T........G......A.T.......T.....T...................TT....G..A..........A........T.....A.....AG................G...........G...............A..........C....A.........T....................AGG...T.........G. 29 26 , 29 26 235:>KF789728,A/North Carolina/05/2013(H3N2) 236 >KF790323,A/New Mexico/23/2012(H3N2) ................T........G......A.T.......T.....T...................T.....G..A..........A........T.....A.....AG................G...........G..........................C....A.........T....................AGG...T.........G. 26 24 , 26 24 236:>KF790323,A/New Mexico/23/2012(H3N2) 237 >KF790190,A/Michigan/25/2012(H3N2) ................T........G......A.T.......T.....T...................T.....G..A..........A........T.....A.....AG................G...........G..........................C....A.........T....................AGG...T.........G. 24 24 , 24 24 237:>KF790190,A/Michigan/25/2012(H3N2) 238 >KF789732,A/Vermont/19/2012(H3N2) ................T........G......A.T.......T.....T...................T.....G..A..........A........T.....A.....A.................G...........G..........................C....A.........T....................AGG...T.........G. 23 23 , 23 23 238:>KF789732,A/Vermont/19/2012(H3N2) 239 >KF789646,A/Idaho/02/2013(H3N2) ................T........G......A.T.......T.....T..............A....T.....G..A..........A........T.....A.....A.................G...........G..........................C....A.........T....................AGG...T.........G. 25 24 , 25 24 239:>KF789646,A/Idaho/02/2013(H3N2) 240 >KF790054,A/California/46/2012(H3N2) ................T........G......A.T.......T.....T...................T.....G..A..........A........T.....A.....A.................G...........G..........................C....A.........T....................AGG...T.........G. 23 23 , 23 23 240:>KF790054,A/California/46/2012(H3N2) 241 >KF790454,A/Nevada/02/2013(H3N2) ................T........G......A.T.......T.....T...................T.....G..A..........A........T.....A.....A.................G...........G..........................C....A.........T....................AGG...T.........G. 25 23 , 25 23 241:>KF790454,A/Nevada/02/2013(H3N2) 242 >KF789953,A/Ohio/01/2013(H3N2) ................T........G......A.T.......T.....T...................T.....G..A..........A........T.....A.....A.................G...........G..........................C....A.........T....................AGG...T.........G. 23 23 , 23 23 242:>KF789953,A/Ohio/01/2013(H3N2) 243 >KF790509,A/California/11/2013(H3N2) ................T........G......A.T.......T.....T...................T.....G..A..........A........T...C.A.....A.................G...........G..........................C....A.........T....................AGG...T.........G. 26 24 , 26 24 243:>KF790509,A/California/11/2013(H3N2) 244 >KF790213,A/Iowa/13/2012(H3N2) ................T........G......A.T.......T.....T...................T.....G..A..........A........T.....A.....A.................G...........G..........................C....A.........T....................AGG...T.........G. 23 23 , 23 23 244:>KF790213,A/Iowa/13/2012(H3N2) 245 >KF790512,A/Idaho/01/2013(H3N2) ................T........G......A.T.......T.....T...................T.....G..A..........A........T.....A.....A.................G...........G..........................C....A.........T....................AGG.T.T.........G. 25 24 , 25 24 245:>KF790512,A/Idaho/01/2013(H3N2) 246 >KF789826,A/Washington/62/2012(H3N2) ................T........G......A.T.......T.....T...................T.....G..A..........A........T.....A.....A.................G...........G..........................C....A.........T....................AGG...T.........G. 23 23 , 23 23 246:>KF789826,A/Washington/62/2012(H3N2) 247 >KF790446,A/Wyoming/20/2012(H3N2) ................T........G......A.T.......T.....T...................T.....G..A..........A........T.....A.....A.................G.....A.....G..........................C....A.........T....................AGG...T.........G. 24 24 , 24 24 247:>KF790446,A/Wyoming/20/2012(H3N2) 248 >KF789775,A/South Dakota/12/2012(H3N2) ................T........G......A.T.......T.....T...................T.....G..A..........A........T.....A.....A.................G.....A.....G..........................C....A.........T....................AGG...T.........G. 24 24 , 24 24 248:>KF789775,A/South Dakota/12/2012(H3N2) 249 >KF789688,A/South Dakota/10/2012(H3N2) ................T........G......A.T.......T.....T...................T.....G..A..........A........T.....A.....A.................G.....A.....G..........................C....A.........T....................AGG...T.........G. 24 24 , 24 24 249:>KF789688,A/South Dakota/10/2012(H3N2) 250 >KF789791,A/South Dakota/14/2012(H3N2) ................T........G......A.T.......T.....T...................T.....G..A..........A........T.....A.....A.................G.....A.....G..........................C....A.........T....................AGG...T.........G. 24 24 , 24 24 250:>KF789791,A/South Dakota/14/2012(H3N2) 251 >KF789794,A/South Dakota/12/2012(H3N2) ................T........G......A.T.......T.....T...................T.....G..A..........A..T.....T.....A.....A........G........G.....A.....G..........................C....A.........T....................AGG...T.........G. 26 26 , 26 26 251:>KF789794,A/South Dakota/12/2012(H3N2) 252 >KF790051,A/South Dakota/15/2012(H3N2) ................T........G......A.T.......T.....T...................T........A..........A..T.....T.....AA....A.................G.....A.....G..........................C....A.........T....................AGG...T.........G. 25 25 , 25 25 252:>KF790051,A/South Dakota/15/2012(H3N2) 253 >KF790373,A/Ohio/01/2013(H3N2) ................T........G......A.T.......T.....T...................T.....G..A.A........A..T.....T.....A.....A.......M.........G...........G..........................C....A.........T....................AGG...T.........G. 26 26 , 26 26 253:>KF790373,A/Ohio/01/2013(H3N2) 254 >KF790009,A/South Dakota/16/2012(H3N2) ................T........G......A.T.......T.....T...................T.....G..A.M........A..T.R...T.....A.....A........R........G...........G..........................C....A.........T....................AGG...T.........G. 27 27 , 27 27 254:>KF790009,A/South Dakota/16/2012(H3N2) 255 >KF790141,A/Georgia/03/2013(H3N2) ................T........G......A.T.............T...................T.....G..A.............T.....T.....A.A...A........M........G...........G..C.......................C....A.................A........A...AGG.............G. 25 25 , 25 25 255:>KF790141,A/Georgia/03/2013(H3N2) 256 >KF789884,A/Georgia/03/2013(H3N2) ................T........G......A.T.............T...................T.....G..A...................T.....A.A...A.................G...........G..C.......................C....A.................A........A...AGG.............G. 23 23 , 23 23 256:>KF789884,A/Georgia/03/2013(H3N2) 257 >KF790115,A/Kansas/04/2013(H3N2) ................T........G......A.T.............T...................T.....G..A..............A....T.....A.....AR................G...........G..C........A.A............C....A........................T.A...AGG.............G. 28 26 , 28 26 257:>KF790115,A/Kansas/04/2013(H3N2) 258 >KF790023,A/New Mexico/09/2013(H3N2) ................T........G......A.T.............T...................T.....G..A..............A....T.....A.....AG................G...........G..........................C....A..........................A...AGG.............G. 22 22 , 22 22 258:>KF790023,A/New Mexico/09/2013(H3N2) 259 >KF790333,A/District Of Columbia/01/2012(H3N2) ................T........G......A.T.............T...................T........A............A......T.....A.....A.................G...........G..........A.........C.....C....A.........................GA...AGG..A..........G. 25 24 , 25 24 259:>KF790333,A/District Of Columbia/01/2012(H3N2) 260 >KF789759,A/Nevada/28/2012(H3N2) ................T........G......A.T.....T.......T...................T.....G..AC...........A......T.....A.....A...............C.G...........G..........A.......A.C....CC....A.........................GA...AGG..A..........G. 31 30 , 31 30 260:>KF789759,A/Nevada/28/2012(H3N2) 261 >KF790455,A/California/10/2013(H3N2) ................T........G......A.T.....T.......T...................T.....G..A............A......T.....A.....A......G..........G...........G........C.A.........C.....C....A.........................GA...AGG..A..........G. 30 28 , 30 28 261:>KF790455,A/California/10/2013(H3N2) 262 >KF790066,A/Colorado/01/2013(H3N2) ................T........G......A.T.....T.......T...................T.....G..A............A......T.....A.....A.....A...........G...........G..........A.........C.....C....A.........................GA...AGG..A..........G. 27 27 , 27 27 262:>KF790066,A/Colorado/01/2013(H3N2) 263 >KF789716,A/Colorado/21/2012(H3N2) ................T........G......A.T.....T.......T...................T.....G.GA............A......T.....A.....AR....A...........G...........G..........A.........C.....C....A...............A..........A...AGG.............G. 28 28 , 28 28 263:>KF789716,A/Colorado/21/2012(H3N2) 264 >KF789812,A/Illinois/15/2012(H3N2) ................T........G......A.T.....T.......T...................T.....G..A............A......T.....A.....AG................G...........G..........A.........C.....C....A..........................A...AGG.............G. 25 25 , 25 25 264:>KF789812,A/Illinois/15/2012(H3N2) 265 >KF790230,A/North Dakota/05/2012(H3N2) ................T........G......A.T.....T.......T...................T.....G..A............A......T.....A.....AG................G...........G..........A.........C.....C....A..........................A...AGG............... 24 24 , 24 24 265:>KF790230,A/North Dakota/05/2012(H3N2) 266 >KF789640,A/Vermont/02/2013(H3N2) ................T........G......A.T.....T.......T...................T.....G..A............A......T.....A.....A.................G...........G..........A.........C.....C....A..........................A...AGG.............G. 24 24 , 24 24 266:>KF789640,A/Vermont/02/2013(H3N2) 267 >KF790368,A/Ohio/92/2012(H3N2) ................T........G......A.T.....T.......T.......A...........T.....G..A............A......T.....A.....A..........A......G...........G..........A.........C.....C....A..........................A...AGG.............G. 26 26 , 26 26 267:>KF790368,A/Ohio/92/2012(H3N2) 268 >KF789656,A/Oregon/01/2013(H3N2) ................T........G......A.T.....T.......T...................T.....G..A............A......T.....A.....A.................G...........G..........A.........C.....C....A..........................A...AGG.............G. 24 24 , 24 24 268:>KF789656,A/Oregon/01/2013(H3N2) 269 >KF790028,A/Michigan/03/2013(H3N2) ................T........G......A.T.....T.......T...................T..G..G..A............A......T.....A.....A.................G...........G..........A.........C.....C....A..........................A...AGG.............G. 26 25 , 26 25 269:>KF790028,A/Michigan/03/2013(H3N2) 270 >KF789740,A/Minnesota/03/2013(H3N2) ................T........G......A.T.....T.......T..........G........T.....G..A............A......T.....A.....A.................G...........G..........A.........C..C..C....A..........................A...AGG.............G. 26 26 , 26 26 270:>KF789740,A/Minnesota/03/2013(H3N2) 271 >KF790473,A/New Mexico/04/2013(H3N2) ................TT.......G......A.T.....T.......T...................T.....G..A............A......T.....A.....A.................G...........G..........A.........C.....C....A..........................A...AGG.............G. 26 25 , 26 25 271:>KF790473,A/New Mexico/04/2013(H3N2) 272 >KF789628,A/Kansas/02/2013(H3N2) ................T........G......A.T.....T.......T...................T.....G..A.......T....A......T.....A.....A.................G...........G..........A.........C.....C....A..........................A...AGG.............G. 26 25 , 26 25 272:>KF789628,A/Kansas/02/2013(H3N2) 273 >KF789952,A/Illinois/01/2013(H3N2) ................T........G......A.T.....T.......T...................T.....G..A............A......T.....A.....A.................G...........G..........A.........C.....C....A..........................A...AGG.............G. 26 24 , 26 24 273:>KF789952,A/Illinois/01/2013(H3N2) 274 >KF790357,A/Mississippi/01/2013(H3N2) ................T........G......A.T.....T.......T......A............T.....G..A............A......T.....A.....A.................G...........G..........A.........C.....C....A..........................A...AGG.............G. 25 25 , 25 25 274:>KF790357,A/Mississippi/01/2013(H3N2) 275 >KF790334,A/Pennsylvania/02/2013(H3N2) ................T........G......A.T.....T.......T...................T.....G..A.....G......A......T.....A.....A.................G...........G..........A.........C.....C....A..........................A...AGG.............G. 25 25 , 25 25 275:>KF790334,A/Pennsylvania/02/2013(H3N2) 276 >KF790478,A/Louisiana/01/2013(H3N2) ................T........G......A.T.....T.......T...................T.....G..A............A......T.....A.....A.................G...........G..........A.........C.....C....A..........................A...AGG.............G. 25 24 , 25 24 276:>KF790478,A/Louisiana/01/2013(H3N2) 277 >KF789906,A/California/14/2013(H3N2) ................T........G......A.T.....T.......T...................T.....G..A............A......T.....A.....A.................G...........G.G........A.........C.....C....A..........................A...AGG.............G. 25 25 , 25 25 277:>KF789906,A/California/14/2013(H3N2) 278 >KF790439,A/Wisconsin/41/2012(H3N2) ................T........G.....AA.T.....T.......T...................T.....G..A............A......T.....A.....A.................G...........G..........A.........C.....C....A..........................A...AGG.............G. 25 25 , 25 25 278:>KF790439,A/Wisconsin/41/2012(H3N2) 279 >KF790413,A/Wisconsin/05/2013(H3N2) ................T........G.....AA.T.....T.......T...................T.....G..A............A......T.....A.....A.................G...........G..........A.........C.....C....A..........................A...AGG.............G. 26 25 , 26 25 279:>KF790413,A/Wisconsin/05/2013(H3N2) 280 >KF789673,A/Missouri/13/2012(H3N2) ................T........G.....AA.T.....T.......T...................T.....G..A............A......T.....A.....A.................G...........G..........A.........C.....C....A..........................A...AGG.............G. 25 25 , 25 25 280:>KF789673,A/Missouri/13/2012(H3N2) 281 >KF789619,A/Connecticut/01/2013(H3N2) ................T........G......A.T.....T.......T...................T.....G..A......A.....A......T.....A.....A.................G...........G..........A.........C.....C....A..........................A...AGG.............G. 25 25 , 25 25 281:>KF789619,A/Connecticut/01/2013(H3N2) 282 >KF790160,A/Wisconsin/38/2012(H3N2) ................T........G......A.T.....T.......T...................T.....G..A............A......T.....A.....A.................G...........G..........A.........C.....C....A..........................A...AGG.............G. 24 24 , 24 24 282:>KF790160,A/Wisconsin/38/2012(H3N2) 283 >KF789977,A/Oregon/01/2013(H3N2) ................T........G......A.T.....T.......T...................TT....G..A............A....C.T.....A.....A.................G...........G..........A.........C.....C....A..........................A...AGG.............G. 26 26 , 26 26 283:>KF789977,A/Oregon/01/2013(H3N2) 284 >KF790041,A/Kansas/01/2013(H3N2) ................T........G......A.T.....T.......T...................T.....G..A............A......T.....A.....A.................G...........G..........A.........C.....C....A..........................A...AGG.............G. 24 24 , 24 24 284:>KF790041,A/Kansas/01/2013(H3N2) 285 >KF789633,A/Louisiana/02/2013(H3N2) ................T........G......A.T.....T.......T...................T.....G..A............A......T.....A.....A.................G...........G..........A.........C.....C....A..........................A...AGG..........T..G. 25 25 , 25 25 285:>KF789633,A/Louisiana/02/2013(H3N2) 286 >KF789741,A/Tennessee/02/2013(H3N2) ................T........G......A.T.....T.......T...................T.....G..A............A......T.....A.....A.................G...........G..........A.........C.....C....A..........................A...AGG.............G. 24 24 , 24 24 286:>KF789741,A/Tennessee/02/2013(H3N2) 287 >KF789885,A/Maine/11/2012(H3N2) ................T........G......A.T.....T.......T...................T.....G..A...................T.....A.....A.T...............G...........G..........A.G.......C.....C....A..........................A...AGG.............G. 25 25 , 25 25 287:>KF789885,A/Maine/11/2012(H3N2) 288 >KF789650,A/Mississippi/02/2013(H3N2) ................T........G......A.T.....T.......T...................T.....G..A...................T.....A.....A.T...............G...........G..........A.G.......C.....C....A..........................A...AGG.............G. 25 25 , 25 25 288:>KF789650,A/Mississippi/02/2013(H3N2) 289 >KF790517,A/California/12/2013(H3N2) C...............T........G......A.T.....T.......T...................T.....G..A...................T.....A.....A.T...............G...........G..........A.G.......C.....C....A..........................A...AGG.............G. 26 26 , 26 26 289:>KF790517,A/California/12/2013(H3N2) 290 >KF789787,A/Michigan/32/2012(H3N2) ................T........G......A.T.....T.......T...................T.....G..A...................T.....A.....A.T...............G...........G..........A.G.......C.....C....A..........................A...AGG.............G. 25 25 , 25 25 290:>KF789787,A/Michigan/32/2012(H3N2) 291 >KF790155,A/Minnesota/05/2013(H3N2) ................T........G......A.T..G..........T...................T.....G..A...................T.....A.....A.................G..........AG..........................C....A..........................A...AGG.............G. 25 22 , 25 22 291:>KF790155,A/Minnesota/05/2013(H3N2) 292 >KF789739,A/California/22/2013(H3N2) ................T........G......A.T.............TC..................T.....G..A.....G.............T.....A.....A.................G...........G.................T........C....A.......................T..A...AGG.............G. 24 24 , 24 24 292:>KF789739,A/California/22/2013(H3N2) 293 >KF790391,A/Alaska/04/2013(H3N2) ................T........G......A.T.............T...................T.....G..A...................T.....A.....A.................G...........G..........................C....A..........................A...AGG.............G. 22 20 , 22 20 293:>KF790391,A/Alaska/04/2013(H3N2) 294 >KF790036,A/Nevada/05/2013(H3N2) ................T........G......A.T.............T...................T.....G..A...................T.....A.....A.................G...........G..........................C....A..........................A...AGG.............G. 20 20 , 20 20 294:>KF790036,A/Nevada/05/2013(H3N2) 295 >KF790500,A/Kansas/11/2012(H3N2) ................T........G......A.T.............T.......A...........T.....G..A...................T.....A.....A.................G...........G..........................C....A..........................A...AGG.............G. 22 21 , 22 21 295:>KF790500,A/Kansas/11/2012(H3N2) 296 >KF790100,A/Wyoming/18/2012(H3N2) ................T........G......A.T.............T...A...............T.....G..A...................T...........A.................G...........G..........................C....A..................A............GG.............G. 21 19 , 21 19 296:>KF790100,A/Wyoming/18/2012(H3N2) 297 >KF789667,A/Maryland/30/2012(H3N2) ................T........G......A.T.................................T.....G..A..............T....T.....T.....A..T..............G...........G..........................C....A..................A.....................G.....G. 20 19 , 20 19 297:>KF789667,A/Maryland/30/2012(H3N2) 298 >KF790432,A/Oregon/11/2012(H3N2) ....T...........T........G......A.T.................................T.....G..A...................T.....T.....A..T..............G...........G..........................C....A..................A.....................G.....G. 21 19 , 21 19 298:>KF790432,A/Oregon/11/2012(H3N2) 299 >KF790229,A/Oklahoma/05/2012(H3N2) ....T...........T........G......A.T.................................T.....G..A...................T.....T.....A..T..............G...........G..........................C....A..................A.....................G.....G. 19 19 , 19 19 299:>KF790229,A/Oklahoma/05/2012(H3N2) 300 >A/Czech Republic/121/2012,2012/03/06,Czech Republic ................T........G......A.T......C.....................A....T........A...................T...........A.T...............G...........G..........................C....A..............................................G. 18 16 , 18 16 300:>A/Czech Republic/121/2012,2012/03/06,Czech Republic 301 >KF790228,A/Hawaii/30/2012(H3N2) ........A.......T........G......A.T.................................T........A..C................T........T..A.................G...........G.............A..C.........C...TA..............................................G. 19 19 , 19 19 301:>KF790228,A/Hawaii/30/2012(H3N2) 302 >KF790430,A/Massachusetts/07/2012(H3N2) ........A.......T........G......A.T.................................T........A..C................T........S..AR................G...........G.........T...A..C.........C...TA..............................................G. 23 21 , 23 21 302:>KF790430,A/Massachusetts/07/2012(H3N2) 303 >KF790502,A/Pennsylvania/21/2012(H3N2) ........A.......T........G......A.T.................................T........A..C................T...........A.................G..C........G.........T...A..C.........C...TA..............................................G. 20 20 , 20 20 303:>KF790502,A/Pennsylvania/21/2012(H3N2) 304 >KF790461,A/New Mexico/03/2013(H3N2) ........A.......T........G......A.T.................................T........A..C................T.........Y.A.................G..C........G.........T...A..C.........C...TA..............................................G. 23 21 , 23 21 304:>KF790461,A/New Mexico/03/2013(H3N2) 305 >KF790262,A/New Hampshire/12/2012(H3N2) ........A.......T........G......A.T.................................T........A..C................T...........A.................G..C........G.........T...A..C.........C...TA..............................................G. 20 20 , 20 20 305:>KF790262,A/New Hampshire/12/2012(H3N2) 306 >KF789668,A/New Hampshire/11/2012(H3N2) ........A.......T........G......A.T.................................T........A..C................T...........A.................G...........G.........T...A..C.........C...TA..............................................G. 19 19 , 19 19 306:>KF789668,A/New Hampshire/11/2012(H3N2) 307 >KF790236,A/New York/38/2012(H3N2) ........A.......T........G......A.T.................................T........A..C..............C.T...........A.................G...........G.........T...A..C.........C...TA..............................................G. 20 20 , 20 20 307:>KF790236,A/New York/38/2012(H3N2) 308 >KF789870,A/New Hampshire/11/2012(H3N2) ........A.......T........G......A.T.................................T........A..C..............C.T...........A.................G...........G.........T...A..C.........C...TA..............................................G. 20 20 , 20 20 308:>KF789870,A/New Hampshire/11/2012(H3N2) 309 >KF790282,A/New York/38/2012(H3N2) ........A.......T........G......A.T.................................T........A..C................T...........A.................G...........G.........T...A..C.........C...TA..............................................G. 19 19 , 19 19 309:>KF790282,A/New York/38/2012(H3N2) 310 >KF789989,A/Hawaii/26/2012(H3N2) ........A.......T........G......A.T.................................T........A..C................T...........A.................G...........G.............A..C.........C...TA..............................................G. 18 18 , 18 18 310:>KF789989,A/Hawaii/26/2012(H3N2) 311 >KF790171,A/Hawaii/28/2012(H3N2) ........A.......T........G......A.T.................................T........A..C................T...........A.................G...........G.............A..C.........C...TA..............................................G. 19 18 , 19 18 311:>KF790171,A/Hawaii/28/2012(H3N2) 312 >KF789941,A/Hawaii/45/2012(H3N2) ........A.......T........G......A.T.................................T........A..C................T...........A.................G...........G.............A..C.........C...TA..............................................G. 18 18 , 18 18 312:>KF789941,A/Hawaii/45/2012(H3N2) 313 >KF790223,A/Hawaii/29/2012(H3N2) ........A.......T........G......A.T.................................T........A..C................T...........A.................G...........G.............A..C.........C...TA..............................................G. 19 18 , 19 18 313:>KF790223,A/Hawaii/29/2012(H3N2) 314 >KF789927,A/California/49/2012(H3N2) ........A.......T........G......A.T.................................T........A..C................T...........A.................G...........G.............A..C.........C...TA..............................................G. 18 18 , 18 18 314:>KF789927,A/California/49/2012(H3N2) 315 >KF789990,A/Hawaii/25/2012(H3N2) ........A.......T........G......A.T...........................G.....T........A..C................T...........A.................G...........G.............A..C.........C...TA..............................................G. 19 19 , 19 19 315:>KF789990,A/Hawaii/25/2012(H3N2) 316 >KF789993,A/Hawaii/25/2012(H3N2) ........A.......T........G......A.T...........................G.....T........A..C..........T.....T......T....A.................G...........G.............A..C.........C...TA..............................................G. 21 21 , 21 21 316:>KF789993,A/Hawaii/25/2012(H3N2) 317 >KF789999,A/Hawaii/26/2012(H3N2) ........A.......T........G......A.T.................................T........A..C..........T.R...T......Y....A.................G...........G.............A..C.........C...TA..............................................G. 21 21 , 21 21 317:>KF789999,A/Hawaii/26/2012(H3N2) 318 >KF789587,A/New Hampshire/16/2012(H3N2) ................T........G......A.T.................................T........A.............T.....T...........A.................G...........G..........................C....A.....T............................T.......T...G. 20 17 , 20 17 318:>KF789587,A/New Hampshire/16/2012(H3N2) 319 >KF789696,A/Maine/05/2012(H3N2) .C...........A..T........G......A.T..........................G......T........A....G..............T...........A.................G...........G..........................C....A.......A...........................A..........G. 21 19 , 21 19 319:>KF789696,A/Maine/05/2012(H3N2) 320 >KC893164,A/Maine/05/2012(H3N2) .C...........A..T........G......A.T..........................G......T........A....G..............T...........A.................G...........G..........................C....A.......A...........................A..........G. 19 19 , 19 19 320:>KC893164,A/Maine/05/2012(H3N2) 321 >KF790394,A/New York/61/2012(H3N2) ......................................C...................................G......................T...........A.............................G.......................C..C.................................A......A..........G. 13 10 , 13 10 321:>KF790394,A/New York/61/2012(H3N2) 322 >KF789877,A/Arkansas/05/2012(H3N2) .............A....A...T............CA................................K...GG.........A...............G........A................A...................................T...............T.A............C......A........G.......... 18 18 , 18 18 322:>KF789877,A/Arkansas/05/2012(H3N2) 323 >KF790184,A/Alaska/23/2012(H3N2) .............A........T.A..........CA..................................G.GG.........A......T........G........A........G.......A.........C................A........T.................A............C......A........G.......... 21 21 , 21 21 323:>KF790184,A/Alaska/23/2012(H3N2) 324 >KF790196,A/Alaska/22/2012(H3N2) .............A........T.A..........CA..................................G.GG.........A...............G........A................A.........C................A........T.................A............C......A........G.......... 20 19 , 20 19 324:>KF790196,A/Alaska/22/2012(H3N2) 325 >KF790195,A/Alaska/23/2012(H3N2) .............A........T.A..........CA..................................G.GG.........A...............G........A................A.........C................A........T.................A............C......A........G.......... 19 19 , 19 19 325:>KF790195,A/Alaska/23/2012(H3N2) 326 >KF789796,A/Alaska/31/2012(H3N2) .............A........T.A..........CA..................................G.GG.........A...............G........A................A.........C................A........T.................A............C......A........G.......... 20 19 , 20 19 326:>KF789796,A/Alaska/31/2012(H3N2) 327 >KF790255,A/Alaska/24/2012(H3N2) .............A........T.A..........CA..................................G.GG.........A...............G........A................A.........C................A........T.................A............C......A........G.......... 19 19 , 19 19 327:>KF790255,A/Alaska/24/2012(H3N2) 328 >KF790238,A/Alaska/24/2012(H3N2) .............A........T.A..........CA..................................G.GG.........A..........C....G........A................A.........C................A........T.................A............C......A........G.......... 20 20 , 20 20 328:>KF790238,A/Alaska/24/2012(H3N2) 329 >KF790216,A/Alaska/22/2012(H3N2) .............A........T.A..........CA..................................G.GG.........A..........C....G........A................A.........C................A........T.................A............C......A........G.......... 20 20 , 20 20 329:>KF790216,A/Alaska/22/2012(H3N2) 330 >KF789606,A/North Dakota/07/2012(H3N2) .............A........T............CA.....T..............................GG...C.....A...............G........A................A...................................T.....A...........A............C......A........G.......... 19 18 , 19 18 330:>KF789606,A/North Dakota/07/2012(H3N2) 331 >KF790370,A/Hawaii/27/2012(H3N2) .............A...........................................................GG.....C...A...............G........A............A...A.............T.......................................A............C......A........G.....T.... 16 15 , 16 15 331:>KF790370,A/Hawaii/27/2012(H3N2) 332 >KF790343,A/Hawaii/27/2012(H3N2) .............A...........................................................GG.....C...A......T........G........A.......M....A...A.............T.......................................A............C......A........G.....T.... 17 17 , 17 17 332:>KF790343,A/Hawaii/27/2012(H3N2) 333 >KF790425,A/Texas/83/2012(H3N2) ........A..C.............................................................GG........................TG........A...........A....A........T............................................A.........AA.C......A................... 16 15 , 16 15 333:>KF790425,A/Texas/83/2012(H3N2) 334 >Index/32g12f1.c2,42-53 ........A..C.............................................................GG........................TG........A...........A....A........T............................................A.........AA.C......A................... 15 15 , 15 15 334:>Index/32g12f1.c2,42-53 335 >KF790187,A/Maryland/32/2012(H3N2) ...........C.............................................................GG........................TG........A................A........T............................................A.........AA.C......A................... 14 13 , 14 13 335:>KF790187,A/Maryland/32/2012(H3N2) 336 >KF790185,A/Louisiana/09/2012(H3N2) ................................A........................................GG.........................G........A................A........T............................................A............C......A................... 15 10 , 15 10 336:>KF790185,A/Louisiana/09/2012(H3N2) 337 >KF790227,A/Maine/08/2012(H3N2) .......................................................................G.GG.........................GC........................A........T............................................A...........TC......A................... 17 11 , 17 11 337:>KF790227,A/Maine/08/2012(H3N2) ---Index----------------------------------------------------TTGAAATCGTCTACTACGGTGACACAATTTGGGTCTGATGCTCCTTGCCTCGCTTGGGACGAAGCAACCGAAGAATAGTCTAAAGCTAGAGGGGTTAGTGATCGCTCCAGACCAAGAAATCGGGCTCTACTCAGCCTTGACATACATATCGGAGCGTAGATCATGTAGGACCAGTATCGCGCTTCACGTGGGCTCCGACAGCGAAGCGGAGTATCCCAAG -codon-position--------------------------------------------- 11 1 1 11 1 1 2 212 12 2 111 11 212 1 1 1212 2 2 2 122 111 2 2 12 11 1 12 122 2 2 21 1 1 1 2 2 1 1 1 1 1 2 12 2 0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000011111111111111111111111111111111111111111111111111111111111111111111111111111 0000000000000000000001111111111111112222222222222233333333334444444444444444455555555555556666666666666677777777777777788888888888999999999999900000000000111111111111122222222223333333333334444444444455555555555666666666 0122233334445557778990334445667888990011223477888901124556990111233456677789900111234466990001223448889900011122336668812333477889013456777889900111345888011123566799901345567892234456667891123445789900112455677112356778 9812836793582570284368594676251027155609287069125130685784035389005760823822814689870314163596399032790345904516262584569037303271359446258383459147276037103551867314508654795160384732351923687398451479384547958344732013
NA from H3N2, USA 2012f , all states
Code:000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111 000000000000000000000000001111111111111111111111111122222222222222222222222222222222222233333333333333333333333344444444444444444444444444444555555555555555555566666666666666666666666666666777777777777777777777777788888888888888888888899999999999999999999999999990000000000000000000000000000000011111111111111111111111111111122222222222222222222222222333333333333333334444 011223345555667777888889990111122223345566677777788900000111112222233333344445566777788800011222333445677777888900012222334445555566667778889000011112444557888900111223334456666666777889999000111223344445556678888900122344445556667889900002233333334444566888999990000011112222233334445567788999900000111122344555666677888899900001223333444466777778999000013344556889990000 626578951789261278245783563178916790574658902457805202467036791235912457901245647038935803625147169686925689034926870679891361236934891246798145703692369259589139235790363780134569258140369058124032814572360370367229858706790271480781803671404567892359109136123560346812560367905781470921806257801467036918712578014845125827934798150369057803256891016245810547379360582356 -codon-position----------------------------------------------------------------- 11 2 122 2 2 1 1 1 2 1 121 1 1 1 121 1 1 2 21 2 1 2 1 1 1 1 2 121 1 2 1 1 1 2 1 122 1 1 1 2212 12 1 1 1 1 1 1 2 121 1 12 1 1 1 2 11 1 122 1 1 2 1 2 1 1 12 12 1 1 2212 2 1121 112 1 1 2 1 2 2 2 2 12 2 2 1122 1 2 11 1 1 2 1 1 1 2 1 11 1 1212 ---Index------------------------------------------------------------------------TTAAGTTCTAATGCTGTTACTGATCTTCATAGCACTCACGAAATAAGAAATGACGCCCCCAAAGAGAATCCCAACTGAAAGGAACAAATTGTGGTCGGCGGAACTCTGAAGCTCGAACGGTGCCTGATGCTAGACCAGTATTTCGGCGAGATTCTTGGGTATCTCGGGTAATAAGAATCCGCGGACTTCAATTAAAGGTAAAAATTACGGACGTTGACGCCTCATTGCAGCAACAGCCGAGTATTGTTCATGGAAAAAAGCCCAAGCTTTGATCTGAGTGTTAGACTAGGGAGTCGCGAGACAGACCGACCTAGCTATGGACGCGTAAGTTACTTAGAGCGCGGTGAAAAGTAACGGGCCTTTGGATCCCAT 1 >Index/USA-2007 .................................................................................................................................................................................................................................................................................................................................................................................... 0 0 , 0 0 1:>Index/USA-2007 2 >Index/Brisbane-like/2007 .................................................................................................................................................................................................................................................................................................................................................................................... 0 0 , 0 0 2:>Index/Brisbane-like/2007 3 >Index/2009/Egypt/Iowa ................CC..C.........G..........................................................................................A............T...................................G................................................................................................................................A................................................G....................... 9 9 , 9 9 3:>Index/2009/Egypt/Iowa 4 >Index/Perth-like/2009 .......................................................................................G...............................A.A................................................G..............................................................A..........................................G.....G......................................................................................... 7 7 , 7 7 4:>Index/Perth-like/2009 5 >KF765552,A/Texas/90/2009(H3N2))6 neuraminidase (NA) gene .......................................................................................G...............................A.A................................................G..............................................................A.............C............................G.....G......................................................................................... 8 8 , 8 8 5:>KF765552,A/Texas/90/2009(H3N2))6 neuraminidase (NA) gene 6 >2007/02/06,14278,AUS,A/Brisbane/10/07 ...................................................................................................................................................................................................................................................C........................................................G....................................................................... 2 2 , 2 2 6:>2007/02/06,14278,AUS,A/Brisbane/10/07 7 >KF790044,A/Alaska/02/2013(H3N2))6 neuraminidase (NA) gene .C................................T...................A............G.......C......G............A...............T.........A.Y.R......................GR....................G............A..................................AT................T.............G...........A..............A........C........A..C..T..................G.....G....................T.................C...... 29 29 , 29 29 7:>KF790044,A/Alaska/02/2013(H3N2))6 neuraminidase (NA) gene 8 >KF790047,A/Alaska/02/2013(H3N2))6 neuraminidase (NA) gene .C................................T...................A............G.......C......G............A...............T.........A..........................G.....................G............A..................................AT................T.............G...........A..............A........C........A..C..T..................G.....G....................T.................C...... 26 26 , 26 26 8:>KF790047,A/Alaska/02/2013(H3N2))6 neuraminidase (NA) gene 9 >KF790218,A/South Carolina/16/2012(H3N2))6 neuraminidase (NA) gene ..................................T...................A....................C......G............................T.........A....R...........................................G............A...................................T................T.............G...........A.......................C........A..C..T..................G.....G....................T.................C...... 21 21 , 21 21 9:>KF790218,A/South Carolina/16/2012(H3N2))6 neuraminidase (NA) gene 10 >KF789813,A/Georgia/22/2012(H3N2))6 neuraminidase (NA) gene ..................................T...................A....................C......G............................T.........A....G...........................................G............A...................................T................T.............G...........A.......................C........A..C..T..................G.....G....................T.................C...... 21 21 , 21 21 10:>KF789813,A/Georgia/22/2012(H3N2))6 neuraminidase (NA) gene 11 >KF789545,A/California/55/2012(H3N2))6 neuraminidase (NA) gene ..................................T...................A....................C......G............................T.........A.Y..............................................G............A...................................T................T.............G...........A..........T............C........A..C..T..................G.....G....................T.................C...... 22 22 , 22 22 11:>KF789545,A/California/55/2012(H3N2))6 neuraminidase (NA) gene 12 >KF789934,A/Florida/01/2013(H3N2))6 neuraminidase (NA) gene ..................................T...................A....................C......G............................T.........A.T............................................G.G............A...................................T................T.............G...........A.......................C........A..C..T..................G.....G....................T.................C...... 22 22 , 22 22 12:>KF789934,A/Florida/01/2013(H3N2))6 neuraminidase (NA) gene 13 >KF790272,A/Nevada/26/2012(H3N2))6 neuraminidase (NA) gene ...............................A......................A....................C......G............................T.........A................C...............................G............A...................................T................T.............G...........A.......................C........A..C..T..................G.....G....................T.................C...... 21 21 , 21 21 13:>KF790272,A/Nevada/26/2012(H3N2))6 neuraminidase (NA) gene 14 >Index/32g12f1.c2,55-62 ......................................................A....................C......G............................T.........A................................................G................................................T................T.............G...................................C........A..C..T..................G.....G....................T.................C...... 17 17 , 17 17 14:>Index/32g12f1.c2,55-62 15 >KF790086,A/Delaware/23/2012(H3N2))6 neuraminidase (NA) gene ....T.................................................A....................C......G............................T.........A...R............................................G................................................T...........G....T.............G................................R..C........A..C..T..................G.....G....................T.................C...... 21 21 , 21 21 15:>KF790086,A/Delaware/23/2012(H3N2))6 neuraminidase (NA) gene 16 >KF790068,A/Delaware/23/2012(H3N2))6 neuraminidase (NA) gene ....T.................................................A....................C......G............................T.........A................................................G................................................T...........G....T.............G...................................C........A..C..T..................G.....G....................T.................C...... 19 19 , 19 19 16:>KF790068,A/Delaware/23/2012(H3N2))6 neuraminidase (NA) gene 17 >KF789580,A/Colorado/20/2012(H3N2))6 neuraminidase (NA) gene ..................G...................................A....................C..G...G............................T.........A................................................G................................................T................T.............G...................................C........A..C..T..................G.....G....................T.................C...... 19 19 , 19 19 17:>KF789580,A/Colorado/20/2012(H3N2))6 neuraminidase (NA) gene 18 >KF790253,A/New York/40/2012(H3N2))6 neuraminidase (NA) gene ......................................................A....................C...................................T.........A................................................G................................................T................T.............A...................................C........A..C..T..........G.......G.....G....................T.................C...... 17 17 , 17 17 18:>KF790253,A/New York/40/2012(H3N2))6 neuraminidase (NA) gene 19 >KF789911,A/Alabama/35/2012(H3N2))6 neuraminidase (NA) gene ......................................................A....................C.....T.............................T.........A............................................A...G................................................T......A.........T.............G...................................C........A..C..T..................G.....G....................T.................C...... 19 19 , 19 19 19:>KF789911,A/Alabama/35/2012(H3N2))6 neuraminidase (NA) gene 20 >KF789677,A/Virginia/14/2012(H3N2))6 neuraminidase (NA) gene ......................................................A....................C.....T.............................T.........A....R.......................................A...G................................................T......A.........T.............G...................................C........A..C..T..................G.....G....................T.................C...... 20 20 , 20 20 20:>KF789677,A/Virginia/14/2012(H3N2))6 neuraminidase (NA) gene 21 >KF789685,A/Maryland/43/2012(H3N2))6 neuraminidase (NA) gene ................................................R.....A....................C.....T.............................T.........A....R.......................................A...G................................................T......A.........T.............G...................................C........A..C..T..................G.....G....................T.................C...... 21 21 , 21 21 21:>KF789685,A/Maryland/43/2012(H3N2))6 neuraminidase (NA) gene 22 >KF790177,A/Vermont/16/2012(H3N2))6 neuraminidase (NA) gene ......................................................A..............T.....C...................................T.........A....R...........................................G................................................T................T.............G...................................C........A..C..T............T.....G.....G....................T.....T...........C...... 20 20 , 20 20 22:>KF790177,A/Vermont/16/2012(H3N2))6 neuraminidase (NA) gene 23 >KF790295,A/Mississippi/13/2012(H3N2))6 neuraminidase (NA) gene ......................................................A....................C......G............................T.........A....R...........................................G................................................T................T.A...........G...............................G...C........A..C..T..................G.....G....................T.................C...... 20 20 , 20 20 23:>KF790295,A/Mississippi/13/2012(H3N2))6 neuraminidase (NA) gene 24 >KF789924,A/Georgia/16/2012(H3N2))6 neuraminidase (NA) gene ......................................................AT...................C...................................T.........A....R...........................................G................................................T................T.............G...................................C........A..C..T..................G.....G....................T.................C...T.. 19 19 , 19 19 24:>KF789924,A/Georgia/16/2012(H3N2))6 neuraminidase (NA) gene 25 >KF789901,A/Georgia/15/2012(H3N2))6 neuraminidase (NA) gene ......................................................AT...................C...................................T.........A...R............................................G................................................T................T.............G...................................C........A..C..T..................G.....G....................T.................C...T.. 19 19 , 19 19 25:>KF789901,A/Georgia/15/2012(H3N2))6 neuraminidase (NA) gene 26 >KF789992,A/Florida/39/2012(H3N2))6 neuraminidase (NA) gene ......................................................A....................C...................................T.........A...R............................................G................................................T................T.............G...................................CG.......A..C..T..................G.....G..C.................T.................C...... 19 19 , 19 19 26:>KF789992,A/Florida/39/2012(H3N2))6 neuraminidase (NA) gene 27 >KF789779,A/Louisiana/16/2012(H3N2))6 neuraminidase (NA) gene ......................................................A....................C...................................T.........A................................................G................................................T...G............T.............G...................................C........A..C..T..................G.....G....................T.................C...... 17 17 , 17 17 27:>KF789779,A/Louisiana/16/2012(H3N2))6 neuraminidase (NA) gene 28 >KF790098,A/Wisconsin/37/2012(H3N2))6 neuraminidase (NA) gene ......................................................A....T...............C...................................T.........A.T................................A.............G...................................G............T................T.............G...................................C........A..C..T..................G.....G....................T.................C...... 20 20 , 20 20 28:>KF790098,A/Wisconsin/37/2012(H3N2))6 neuraminidase (NA) gene 29 >KF790105,A/Mississippi/12/2012(H3N2))6 neuraminidase (NA) gene ......................................................A....T...............C...................................T.........A.Y................................A.............G...................................G............T................T.............G...................................C........A..C..T..................G.....G....................T.................C...... 20 20 , 20 20 29:>KF790105,A/Mississippi/12/2012(H3N2))6 neuraminidase (NA) gene 30 >KF790417,A/Nebraska/04/2013(H3N2))6 neuraminidase (NA) gene ......................................................A....T...............C...................................T.........A..................................A.............G...................................G............T................T.............G...................................C........A..C..T..................G.....G....................T.................C...... 19 19 , 19 19 30:>KF790417,A/Nebraska/04/2013(H3N2))6 neuraminidase (NA) gene 31 >KF790161,A/Oklahoma/04/2012(H3N2))6 neuraminidase (NA) gene .....................................G...................................................................T........A......A..........T.................................A...G......................G............G............T....C.................G.................A....................C.............A..C..T.............................................T.........T.......C...... 20 20 , 20 20 31:>KF790161,A/Oklahoma/04/2012(H3N2))6 neuraminidase (NA) gene 32 >KF790288,A/Maine/08/2012(H3N2))6 neuraminidase (NA) gene C...........................G.G..........................................................................................A................................................G....C.................GG........................T........................................A...G.............C................A..C............G.........................GA........T.................C....G. 20 20 , 20 20 32:>KF790288,A/Maine/08/2012(H3N2))6 neuraminidase (NA) gene 33 >KF790173,A/Louisiana/09/2012(H3N2))6 neuraminidase (NA) gene C.................................................................................G......................................A....R...........................................G....C.................GG................T.......T............................................G..................A...........A..C............G.A....A..................GA........T.................C....G. 22 22 , 22 22 33:>KF790173,A/Louisiana/09/2012(H3N2))6 neuraminidase (NA) gene 34 >Index/32g12f1.c2,42-53 C.....................................................A..................................................................A.......T..................G.....................G....C.................GG........................T............................................G..................A...........A..C............G..........................A........TG................C...... 19 19 , 19 19 34:>Index/32g12f1.c2,42-53 35 >KF790498,A/Texas/83/2012(H3N2))6 neuraminidase (NA) gene C..........................................C..........A..................................................................A...R...T..................G.....................G..G.C.................GG........................T............................................G..................A...........A..C............G..........................A........TG................C...... 22 22 , 22 22 35:>KF790498,A/Texas/83/2012(H3N2))6 neuraminidase (NA) gene 36 >KF790182,A/Maryland/32/2012(H3N2))6 neuraminidase (NA) gene C........................................................................................................................A.M.....T.................A......................G....C.................GG........................T............................................G.....A............A...........A..C............G.........................GA........TG................C...... 21 21 , 21 21 36:>KF790182,A/Maryland/32/2012(H3N2))6 neuraminidase (NA) gene 37 >KF790206,A/Hawaii/27/2012(H3N2))6 neuraminidase (NA) gene C.......................................................................G..............................T.................A.T.............................................GG....C.................GT........................T............G.......A.............T...........A................A...........A..C....................A.................GA........T.......A.........C...... 24 24 , 24 24 37:>KF790206,A/Hawaii/27/2012(H3N2))6 neuraminidase (NA) gene 38 >KF790207,A/Hawaii/27/2012(H3N2))6 neuraminidase (NA) gene C.......................................................................G..............................T.................A...............................................GG....C.................GT........................T............G.......A.............T...........A................A....R......A..C....................A.................GA........T.......A.........C...... 24 24 , 24 24 38:>KF790207,A/Hawaii/27/2012(H3N2))6 neuraminidase (NA) gene 39 >KF790271,A/Alaska/24/2012(H3N2))6 neuraminidase (NA) gene C........................................................................................................................A................................................G....C.................GT........................T............G.................................A......T.........A...........A..C......................................GA........T.......A.........C...... 18 18 , 18 18 39:>KF790271,A/Alaska/24/2012(H3N2))6 neuraminidase (NA) gene 40 >KF790176,A/Alaska/22/2012(H3N2))6 neuraminidase (NA) gene C........................................................................................................................A................................................G....C.................GT........................T............G.................................A......T.........A...........A..C......................................GA........T.......A.........C...... 18 18 , 18 18 40:>KF790176,A/Alaska/22/2012(H3N2))6 neuraminidase (NA) gene 41 >KF790189,A/Alaska/23/2012(H3N2))6 neuraminidase (NA) gene C........................................................................................................................A................................................G....C.................GT........................T............G.................................A......T.........A...........A..C......................................GA........T.......A.........CA..... 19 19 , 19 19 41:>KF790189,A/Alaska/23/2012(H3N2))6 neuraminidase (NA) gene 42 >KF790202,A/Alaska/23/2012(H3N2))6 neuraminidase (NA) gene C........................................................................................................................A....R...........................................G....C.................GT........................T............G.................................A......T.........A...........A..C......................................GA........T.......A.........CA..... 20 20 , 20 20 42:>KF790202,A/Alaska/23/2012(H3N2))6 neuraminidase (NA) gene 43 >KF790226,A/Alaska/24/2012(H3N2))6 neuraminidase (NA) gene C........................................................................................................................A....R...........................................G....C.................GT........................T............G.................................A......T.........A...........A..C......................................GA........T.......A.........C...... 19 19 , 19 19 43:>KF790226,A/Alaska/24/2012(H3N2))6 neuraminidase (NA) gene 44 >KF789801,A/Alaska/31/2012(H3N2))6 neuraminidase (NA) gene C........................................................................................................................A....R...........................................G....C.................GT........................T............G.................................A......T.........A...........A..C......................................GA........T.......A.........C...... 19 19 , 19 19 44:>KF789801,A/Alaska/31/2012(H3N2))6 neuraminidase (NA) gene 45 >KF789575,A/North Dakota/07/2012(H3N2))6 neuraminidase (NA) gene C...........K............................................................................................................A....R...........................................G....C.................GT........................T............G.................................A......T.........A...........AT.C......................................GA........T.......A.........C...... 21 21 , 21 21 45:>KF789575,A/North Dakota/07/2012(H3N2))6 neuraminidase (NA) gene 46 >KF789886,A/Arkansas/05/2012(H3N2))6 neuraminidase (NA) gene C...................................................................A....................................................A...RR...........................................G....C.................GT........................T............G.................................A......T.........A...........A..C......................................GA........T.......A.........C...... 21 21 , 21 21 46:>KF789886,A/Arkansas/05/2012(H3N2))6 neuraminidase (NA) gene 47 >KF790198,A/Alaska/22/2012(H3N2))6 neuraminidase (NA) gene C........................................................................................................................A...R............................................G....C.................GT........................T............G.................................A......T.........A...........A..C......................................GA........T.......A.........C...... 19 19 , 19 19 47:>KF790198,A/Alaska/22/2012(H3N2))6 neuraminidase (NA) gene 48 >KF790392,A/New York/61/2012(H3N2))6 neuraminidase (NA) gene C...............C.................................C...............................................A......................A................................................G....C.................GT............T...........T............G.................................A......T.........A...........A..C......................................GA........T...A...A.........C..T... 24 24 , 24 24 48:>KF790392,A/New York/61/2012(H3N2))6 neuraminidase (NA) gene 49 >KF790435,A/Louisiana/11/2012(H3N2))6 neuraminidase (NA) gene ................C......C.........G.......................................................................................A..........................G.....................G.....................C............C.............T....................................G..........................A...........A..C..T.............................................T.................C.....C 17 17 , 17 17 49:>KF790435,A/Louisiana/11/2012(H3N2))6 neuraminidase (NA) gene 50 >Index/H3N3-2011-reassortedEI/2011(H3N2) .........................................................................................................................A................................................G................................................T...........................................................................A..C..T.............................................T.................C...... 8 8 , 8 8 50:>Index/H3N3-2011-reassortedEI/2011(H3N2) 51 >KF789908,A/Florida/68/2012(H3N2))6 neuraminidase (NA) gene .......................................................................................................T.................A.............................C..................G................C...............................T...........................................................................A..C..T........................G....................T.................C...... 12 12 , 12 12 51:>KF789908,A/Florida/68/2012(H3N2))6 neuraminidase (NA) gene 52 >KF789902,A/Kentucky/24/2012(H3N2))6 neuraminidase (NA) gene .....................................................................T.....C...........................T..............A..A.................G...........C.............A....G................C...........G...................T.....C...........................G.........................................A..C..T.......................CG....................C.................C...... 21 21 , 21 21 52:>KF789902,A/Kentucky/24/2012(H3N2))6 neuraminidase (NA) gene 53 >KF789603,A/Kentucky/17/2012(H3N2))6 neuraminidase (NA) gene .....................................................................T.....C...........................T..............A..A....R............G...........C.............A....G................C...........G...................T.....C...........................G.........................................A..C..T.......................CG....................C.................C...... 22 22 , 22 22 53:>KF789603,A/Kentucky/17/2012(H3N2))6 neuraminidase (NA) gene 54 >KF790513,A/Tennessee/10/2012(H3N2))6 neuraminidase (NA) gene .....................................................................T.....C...........................T..............A..A....R............G...........C.............A....G................C...........G...................T.....C...........................G.........................................A..C..T.......................CG....................C.................C...... 22 22 , 22 22 54:>KF790513,A/Tennessee/10/2012(H3N2))6 neuraminidase (NA) gene 55 >KF790487,A/South Carolina/22/2012(H3N2))6 neuraminidase (NA) gene .....................................................................T.....C...........................T..............A..A.................G...........C.............A....G................C...........G...................T.....C...........................G...........R.............................A..C..T.......................CG....................C.................C...... 22 22 , 22 22 55:>KF790487,A/South Carolina/22/2012(H3N2))6 neuraminidase (NA) gene 56 >KF789816,A/Virginia/16/2012(H3N2))6 neuraminidase (NA) gene .....................................................................T.....C...........................T..............A..A.................G...........C.............A....G................C...........G.C.................T.....C...........................G.........................................A..C..T.....A.................CG....................C.................C...... 23 23 , 23 23 56:>KF789816,A/Virginia/16/2012(H3N2))6 neuraminidase (NA) gene 57 >KF789809,A/Virginia/16/2012(H3N2))6 neuraminidase (NA) gene .....................................................................T.....C...........................T....R.........A..A...R.............G...........C.............A....G................C...........G.C.................T.....C...........................G.........................................A..C..T.....A.................CG....................C.................C...... 25 25 , 25 25 57:>KF789809,A/Virginia/16/2012(H3N2))6 neuraminidase (NA) gene 58 >KF789672,A/Virginia/15/2012(H3N2))6 neuraminidase (NA) gene ................................................................R....T.....C...........................T..............A..A...R.............G...........C.............A....G................C...........G.C.................T.....C...........................G.........................................A..C..T.......................CG....................C.................C...... 24 24 , 24 24 58:>KF789672,A/Virginia/15/2012(H3N2))6 neuraminidase (NA) gene 59 >KF789914,A/South Carolina/24/2012(H3N2))6 neuraminidase (NA) gene .....................................................................T.....C...........................T..............A..A.Y.R.............G...........C.............A....G................C...........G...................T.....C...........................G.........................................A..C..T.......................CG....................C.................C...... 23 23 , 23 23 59:>KF789914,A/South Carolina/24/2012(H3N2))6 neuraminidase (NA) gene 60 >KF789704,A/Kentucky/18/2012(H3N2))6 neuraminidase (NA) gene .....................................................................T.....C...........................T..............A..A.................G...........C.............A....G................C...........G...................T.....C...........................G.........................................A..C..T.......................CG....................C............C....C...... 22 22 , 22 22 60:>KF789704,A/Kentucky/18/2012(H3N2))6 neuraminidase (NA) gene 61 >KF789969,A/South Carolina/24/2012(H3N2))6 neuraminidase (NA) gene ........................T............................................T.....C...........................T..............A..A.................G...........C.............A....G................C...........G...................T.....C...........................G.........................................A..C..T.......................CG....................C.................C...... 22 22 , 22 22 61:>KF789969,A/South Carolina/24/2012(H3N2))6 neuraminidase (NA) gene 62 >KF789720,A/Tennessee/18/2012(H3N2))6 neuraminidase (NA) gene .....................................................................T.....C...........................T..............A..A.................G...........C.............A....G................C...........G...................T.....C...........................G.........................................A..C..T.......................CG....................C.................C...... 21 21 , 21 21 62:>KF789720,A/Tennessee/18/2012(H3N2))6 neuraminidase (NA) gene 63 >KF789760,A/Michigan/33/2012(H3N2))6 neuraminidase (NA) gene .....................................................................T.....C...........................T..............A..A.................G...........C.............A....G................C...........G...................T.....C...........................G.........................................A..C..T.......................CG....................C.................C...... 21 21 , 21 21 63:>KF789760,A/Michigan/33/2012(H3N2))6 neuraminidase (NA) gene 64 >A/Czech Republic/121/2012,2012/03/06,Czech Republic ...T.......................................................................C....A..G....C................................A............T....G..............................G.......T..................A....................AT........................................................................A..A..C...........................G....................T.................C...... 19 19 , 19 19 64:>A/Czech Republic/121/2012,2012/03/06,Czech Republic 65 >KF789595,A/New Hampshire/16/2012(H3N2))6 neuraminidase (NA) gene ....................................T......................................C....A..G....C..........................C.....A............T....G..............................G.......T..................A.......C............AT......................G..A..............................................A..AT.C...........................G....................T.................C...... 24 24 , 24 24 65:>KF789595,A/New Hampshire/16/2012(H3N2))6 neuraminidase (NA) gene 66 >KF789695,A/Maine/05/2012(H3N2))6 neuraminidase (NA) gene ...........................................................................C....A..G....C................................A............T....G..............................G.......T.A................A....................AT........................C...............................................A..A..C...........................G................A...T.................C...... 21 21 , 21 21 66:>KF789695,A/Maine/05/2012(H3N2))6 neuraminidase (NA) gene 67 >KC893168,A/Maine/05/2012(H3N2))6 neuraminidase (NA) gene ...........................................................................C....A..G....C................................A...R........T....G..............................G.......T.A................A....................AT........................C...............................................A..A..C...........................G................A...T.................C...... 22 22 , 22 22 67:>KC893168,A/Maine/05/2012(H3N2))6 neuraminidase (NA) gene 68 >KF790034,A/Oklahoma/08/2013(H3N2))6 neuraminidase (NA) gene ...........................................................................C....A..G....C.A................A....A........A.Y.R........T....G..............................G.......T.A................A....................AT..............C......................C..................................A..A..C..........T................G...............A....T.................C...... 28 28 , 28 28 68:>KF790034,A/Oklahoma/08/2013(H3N2))6 neuraminidase (NA) gene 69 >KF790220,A/Arizona/09/2012(H3N2))6 neuraminidase (NA) gene ...........................................................................C....A..G....C................................A.Y..........T....G..............................G.......T..................A....................AT..............C...............................................G.........A..A..C..........T................G...............A....T.................C...... 23 23 , 23 23 69:>KF790220,A/Arizona/09/2012(H3N2))6 neuraminidase (NA) gene 70 >KF790268,A/Arizona/09/2012(H3N2))6 neuraminidase (NA) gene ...........................................................................C....A..G....C.............R..................A............T....G..............................G.......T..................A....................AT..............C...............................................G.........A..A..C..........T................G...............A....T.................C...... 23 23 , 23 23 70:>KF790268,A/Arizona/09/2012(H3N2))6 neuraminidase (NA) gene 71 >KF790245,A/Indiana/161/2012(H3N2))6 neuraminidase (NA) gene ...........................................................................C....A..G....C................................A...R........T....G..............................G.......T..................A....................AT..............C...............................................G.........A..A..C..........T................G...............A....T.................C...... 23 23 , 23 23 71:>KF790245,A/Indiana/161/2012(H3N2))6 neuraminidase (NA) gene 72 >KF790344,A/New Mexico/05/2013(H3N2))6 neuraminidase (NA) gene ...........................................................................C....A..G....C....A...........................A...R........T....G..............................G.......T..................A....................AT..............C.........................................................A..A..C..........T................G...............A....T.................C...... 23 23 , 23 23 72:>KF790344,A/New Mexico/05/2013(H3N2))6 neuraminidase (NA) gene 73 >KF789778,A/Oregon/12/2012(H3N2))6 neuraminidase (NA) gene ...........................................................................C....A..G....C................................A...R........T....G....A.........................G.......T..................A....................AT..............C.........................................................A..A..C..........T................G...............A....T.................C...... 23 23 , 23 23 73:>KF789778,A/Oregon/12/2012(H3N2))6 neuraminidase (NA) gene 74 >KF789781,A/Kansas/14/2012(H3N2))6 neuraminidase (NA) gene ...........................................................................C....A.GG....C................................A...R........T....G..............................G.......T..................A....................AT..............C.......................G.................................A..A..C..........T................G...............A....T.................C...... 24 24 , 24 24 74:>KF789781,A/Kansas/14/2012(H3N2))6 neuraminidase (NA) gene 75 >KF789921,A/Hawaii/24/2012(H3N2))6 neuraminidase (NA) gene ....................................................R......................C....A..G....C................................A...R........T....G..............................G.......T..................A....................AT..............C.........................................................A..A..C..........T................G...............A....T.G...............C...... 24 24 , 24 24 75:>KF789921,A/Hawaii/24/2012(H3N2))6 neuraminidase (NA) gene 76 >KF789542,A/Pennsylvania/03/2013(H3N2))6 neuraminidase (NA) gene ...........................................................................C....A..G....C................................A..CR........T....G..............................G.......T..................A....................AT..............C...................................A.....................A..A..C..........T................G...............A....T.................C...... 24 24 , 24 24 76:>KF789542,A/Pennsylvania/03/2013(H3N2))6 neuraminidase (NA) gene 77 >KF790004,A/New York/35/2012(H3N2))6 neuraminidase (NA) gene ...........................................................................C....A..G....C................................A...R........T....G..............................G.......T..................A....................AT..............C.........................................................A..A..C..........T................G...............A....T.................C...... 22 22 , 22 22 77:>KF790004,A/New York/35/2012(H3N2))6 neuraminidase (NA) gene 78 >KF790085,A/Vermont/28/2012(H3N2))6 neuraminidase (NA) gene ...........................................................................C....A..G....C................................A...R........T....G..............................G.......T..................A....................AT..............C.........................................................A..A..C..........T................G...............A....T.................C...... 22 22 , 22 22 78:>KF790085,A/Vermont/28/2012(H3N2))6 neuraminidase (NA) gene 79 >KF790101,A/Delaware/10/2012(H3N2))6 neuraminidase (NA) gene ...........................................................................C....A..G....C................................A...R........T....G..............................G.......T..................A....................AT..............C.........................................................A..A..C..........T................G...............A....T.................C...... 22 22 , 22 22 79:>KF790101,A/Delaware/10/2012(H3N2))6 neuraminidase (NA) gene 80 >KF790434,A/Delaware/11/2012(H3N2))6 neuraminidase (NA) gene ...........................................................................C....A..G....C................................A...R........T....G..............................G.......T..................A....................AT..............C.........................................................A..A..C..........T.........A......G...............A....T.................C...... 23 23 , 23 23 80:>KF790434,A/Delaware/11/2012(H3N2))6 neuraminidase (NA) gene 81 >KF790170,A/Washington/52/2012(H3N2))6 neuraminidase (NA) gene ...........................................................................C....A..G....C................................A...R........T....G......................................T..................A....................AT..............C.........................................................A..A..C..........T................G...........A...A....T.................C...... 22 22 , 22 22 81:>KF790170,A/Washington/52/2012(H3N2))6 neuraminidase (NA) gene 82 >KF789621,A/Maryland/03/2013(H3N2))6 neuraminidase (NA) gene ....A.....G................................................................C....A..G....C................................A............T....G..............................G.......T..................A...G..........A.....AT..............C.........................................................A..A..C..........T................G...........A...A....T.................C...... 26 26 , 26 26 82:>KF789621,A/Maryland/03/2013(H3N2))6 neuraminidase (NA) gene 83 >KF790154,A/California/04/2013(H3N2))6 neuraminidase (NA) gene ..C........................................................................C....A..G....C................................A............T....G......................T.......G.......T.....G............A....................AT..............C.........................................................A..A..C..........T................G...............A....T.................C...... 24 24 , 24 24 83:>KF790154,A/California/04/2013(H3N2))6 neuraminidase (NA) gene 84 >KF789624,A/North Carolina/04/2013(H3N2))6 neuraminidase (NA) gene .................A.........................................................C....A..G....C................................A............T....G..............................G.......T.......................................AT..............C.........................................................A..A..C..........T................G...............A....T.................C...... 21 21 , 21 21 84:>KF789624,A/North Carolina/04/2013(H3N2))6 neuraminidase (NA) gene 85 >KF789711,A/Texas/91/2012(H3N2))6 neuraminidase (NA) gene ...........................................................................C....A..G....C................................A............T....G..W...........................G.......T..................A....................AT..............C.........................................................A..A..C..........T................G...............A....T.................C...... 22 22 , 22 22 85:>KF789711,A/Texas/91/2012(H3N2))6 neuraminidase (NA) gene 86 >KF790193,A/Florida/40/2012(H3N2))6 neuraminidase (NA) gene ..............................................A............................C....A..G....C................................A............T....G..............................G.......T..................A....................AT..............C.........................................................A..A..C..........T................G...............A....T.................C...... 22 22 , 22 22 86:>KF790193,A/Florida/40/2012(H3N2))6 neuraminidase (NA) gene 87 >KF790243,A/California/42/2012(H3N2))6 neuraminidase (NA) gene ...........................................................................C....A..G....C................................A............T....G..............................G.......T..................A....................AT..............C.........................................................A..A..C..........T................G...............A....T.................C...... 21 21 , 21 21 87:>KF790243,A/California/42/2012(H3N2))6 neuraminidase (NA) gene 88 >Index/32g12f1.c2,10-37 ...........................................................................C....A..G....C................................A............T....G..............................G.......T..................A....................AT..............C.........................................................A..A..C..........T................G...............A....T.................C...... 21 21 , 21 21 88:>Index/32g12f1.c2,10-37 89 >KF790075,A/Vermont/28/2012(H3N2))6 neuraminidase (NA) gene ...........................................................................C....A..G....C................................A............T....G..............................G.......T..................A....................AT..............C.........................................................A..A..C..........T................G...............A....T.................C...... 21 21 , 21 21 89:>KF790075,A/Vermont/28/2012(H3N2))6 neuraminidase (NA) gene 90 >KF789678,A/Rhode Island/09/2012(H3N2))6 neuraminidase (NA) gene ...........................................................................C....A..G....C................................A............T....G..............................G.......T..................A....................AT..............C.........................................................A..A..C..........T................G...............A....T.................C...... 21 21 , 21 21 90:>KF789678,A/Rhode Island/09/2012(H3N2))6 neuraminidase (NA) gene 91 >KF789850,A/Michigan/02/2013(H3N2))6 neuraminidase (NA) gene ...........................................................................C....A..G....C................................A............T....G..............................G.......T..................A....................AT..............C.........................................................A..A..C..........T................G...............A....T.................C...... 21 21 , 21 21 91:>KF789850,A/Michigan/02/2013(H3N2))6 neuraminidase (NA) gene 92 >KF790445,A/Delaware/15/2012(H3N2))6 neuraminidase (NA) gene .........................C.................................................C....A..G....C................................A............T....G..............................G.......T..................A....................AT..............C.........................................................A..A..C..........T................G...............A....T.................C...... 22 22 , 22 22 92:>KF790445,A/Delaware/15/2012(H3N2))6 neuraminidase (NA) gene 93 >KF789918,A/Texas/01/2013(H3N2))6 neuraminidase (NA) gene ........................................G..................................C....A..G....C................................A............T....G..............................G.......T..................A....................AT..............C.........................................................A..A..C..........T................G...............A....T.................C...... 22 22 , 22 22 93:>KF789918,A/Texas/01/2013(H3N2))6 neuraminidase (NA) gene 94 >KF790347,A/Utah/02/2013(H3N2))6 neuraminidase (NA) gene ........................................G..................................C....A..G....C................................A............T....G..............................G.......T..................A....................AT..............C.......................C.................................A..A..C..........T................G...............A....T.................C...... 23 23 , 23 23 94:>KF790347,A/Utah/02/2013(H3N2))6 neuraminidase (NA) gene 95 >KF790377,A/Oklahoma/05/2013(H3N2))6 neuraminidase (NA) gene ........................................G..................................C....A..G....C................................A............T.G..G..............................G.......T..................A..................T.AT..............C.........................................................A..A..C..........T................G...............A....T.................C...... 24 24 , 24 24 95:>KF790377,A/Oklahoma/05/2013(H3N2))6 neuraminidase (NA) gene 96 >KF790462,A/Oklahoma/05/2013(H3N2))6 neuraminidase (NA) gene ........................................G..................................C....A..G....C................................A...R........T.G..G..............................G.......T..................A..................T.AT..............C.........................................................A..A..C..........T................G...............A....T.................C...... 25 25 , 25 25 96:>KF790462,A/Oklahoma/05/2013(H3N2))6 neuraminidase (NA) gene 97 >KF789554,A/California/15/2013(H3N2))6 neuraminidase (NA) gene ...........................................................................C....A..G....C................................A...R........T....G............C.................G.......TT.................A....................AT..............C.........................................................A..A..C..........T................G...............A....T....C............C...... 25 25 , 25 25 97:>KF789554,A/California/15/2013(H3N2))6 neuraminidase (NA) gene 98 >KF789719,A/Montana/14/2012(H3N2))6 neuraminidase (NA) gene ...........................................................................C....A..G....C................................A............T....G........G.....................G.......TT.................A....................AT..............C.........................................................A..A..C..........T................G...............A....T.................C...... 23 23 , 23 23 98:>KF789719,A/Montana/14/2012(H3N2))6 neuraminidase (NA) gene 99 >KF790058,A/Delaware/01/2013(H3N2))6 neuraminidase (NA) gene .........................................G.................................C....A..G....C................................A............T....G..............................G.......T...........G......A....................AT..............C.........................................................A..A..C..........T................G...............A....T.................C...... 23 23 , 23 23 99:>KF790058,A/Delaware/01/2013(H3N2))6 neuraminidase (NA) gene 100 >KF789991,A/Montana/10/2012(H3N2))6 neuraminidase (NA) gene .............................C...................................A.........C....A..G....C................................A....R.......T....G..............................G.......T..................A....................AT..............C.........................................................A..A..C..........T................G...............A....T.................C...... 24 24 , 24 24 100:>KF789991,A/Montana/10/2012(H3N2))6 neuraminidase (NA) gene 101 >KF789570,A/Indiana/01/2013(H3N2))6 neuraminidase (NA) gene ...........................................................................C....A..G....C................................A....R.......T....G..............................G.......T..................A....................AT..............C.................................C.......................A..A..C..........T................G...............A....T.................C...... 23 23 , 23 23 101:>KF789570,A/Indiana/01/2013(H3N2))6 neuraminidase (NA) gene 102 >KF790057,A/Texas/111/2012(H3N2))6 neuraminidase (NA) gene ...........................................................................C....A..G....C................................A....R.......T....G..............................G.......T..................A....................AT..............C.........................................................A..A..C.....T....T................G...............A....T.................C...... 23 23 , 23 23 102:>KF790057,A/Texas/111/2012(H3N2))6 neuraminidase (NA) gene 103 >KF789984,A/Texas/81/2012(H3N2))6 neuraminidase (NA) gene ...........................................................................C....A..G....C................................A...RR.......T....G..............................G.......T..................A....................AT.C............C.........................................................A..A..C..........T................G...............A....T.................C...... 24 24 , 24 24 103:>KF789984,A/Texas/81/2012(H3N2))6 neuraminidase (NA) gene 104 >KF790112,A/Kentucky/16/2012(H3N2))6 neuraminidase (NA) gene ...........................................................................C....A..G....C................................A....R.......T....G..............................G.......T..................A....................AT..............C....................................G....................A..A..C..........T................G...............A....T.................C...... 23 23 , 23 23 104:>KF790112,A/Kentucky/16/2012(H3N2))6 neuraminidase (NA) gene 105 >KF790399,A/Florida/12/2013(H3N2))6 neuraminidase (NA) gene ...........................T.................G........A....................C....A..G....C................................A............T....G..............................G.......T..................A....G...............AT..............C....................................G....................A..A..C..........T................G...............A....T.................C...... 26 26 , 26 26 105:>KF790399,A/Florida/12/2013(H3N2))6 neuraminidase (NA) gene 106 >KF789609,A/Nebraska/06/2013(H3N2))6 neuraminidase (NA) gene ..................................................C...A....M...............C....A..G....C................................A...R........T....G..............................G.......T..................A....................AT..............C....................................G....................A..A..C..........T................G...............A....T........A........C...... 27 27 , 27 27 106:>KF789609,A/Nebraska/06/2013(H3N2))6 neuraminidase (NA) gene 107 >KF790371,A/Maryland/05/2013(H3N2))6 neuraminidase (NA) gene ...........................................................................C....A..G....C................................A...R........T....G......T.......................G.......T..................A....................AT..............C............................C.......G....................A..A..C......A...T................G...............A....T.................C...... 26 26 , 26 26 107:>KF790371,A/Maryland/05/2013(H3N2))6 neuraminidase (NA) gene 108 >KF790336,A/District Of Columbia/02/2012(H3N2))6 neuraminidase (NA) gene ...........................................................................C....A..G....C................................A...R........T....G..............................G.......T..................A....................AT..............C....................................G....................A..A..C......A...T................G...............A....T.................C...... 24 24 , 24 24 108:>KF790336,A/District Of Columbia/02/2012(H3N2))6 neuraminidase (NA) gene 109 >KF789648,A/Alaska/06/2013(H3N2))6 neuraminidase (NA) gene ...........................................................................C....A..G....C...A............................A...A........T....G.C............................G.......T..................A....................AT..............C.........................................................A..A..C..........T................G...............A....T..............C..C...... 25 25 , 25 25 109:>KF789648,A/Alaska/06/2013(H3N2))6 neuraminidase (NA) gene 110 >KF790381,A/Alaska/05/2013(H3N2))6 neuraminidase (NA) gene ...........................................................................C....A..G....C...A............................A...R........T....G.C............................G.......T..................A....................AT..............C.........................................................A..A..C..........T................G...............A....T.................C...... 24 24 , 24 24 110:>KF790381,A/Alaska/05/2013(H3N2))6 neuraminidase (NA) gene 111 >KF789750,A/Maryland/06/2013(H3N2))6 neuraminidase (NA) gene .........................................T.................................C....A..G....C...A............................A...R........T....G..............................G....G..T..G......T........A.................A..AT..............C.........................................................A..A..C...........................G....................T.........A.....A.C...... 28 28 , 28 28 111:>KF789750,A/Maryland/06/2013(H3N2))6 neuraminidase (NA) gene 112 >KF789866,A/Hawaii/02/2013(H3N2))6 neuraminidase (NA) gene .................................G.........................................C....A..G....C...A............................A...R........T....G..............................G.......T..................A...................TAT..............C...................................................C.....A..A..C...........................G....................T.................CC..... 25 25 , 25 25 112:>KF789866,A/Hawaii/02/2013(H3N2))6 neuraminidase (NA) gene 113 >KF789972,A/West Virginia/01/2013(H3N2))6 neuraminidase (NA) gene .................................G.........................................C....A..G....C................................A...R........T....G..............................G.......T..................A...................TAT..............C.........................................................A..A..C...........................G....................T......T..........CC..... 24 24 , 24 24 113:>KF789972,A/West Virginia/01/2013(H3N2))6 neuraminidase (NA) gene 114 >KF790472,A/Rhode Island/06/2013(H3N2))6 neuraminidase (NA) gene .................................G.........................................C....A..G....C................................A...R........T....G..............................G.......T..................A...................TAT..............C.......................................C.................A..A..C...........................G....................T.................CC..... 24 24 , 24 24 114:>KF790472,A/Rhode Island/06/2013(H3N2))6 neuraminidase (NA) gene 115 >KF790163,A/New York/37/2012(H3N2))6 neuraminidase (NA) gene .................................G.........................................C....A..G....C................................A............T....G..............................G.......T..................A...................TAT..............C.........................................................A..A..C...........................G....................T.................CC..... 22 22 , 22 22 115:>KF790163,A/New York/37/2012(H3N2))6 neuraminidase (NA) gene 116 >KF790264,A/Rhode Island/08/2012(H3N2))6 neuraminidase (NA) gene .................................G.........................................C....A..G....C................................A............T....G..............................G.......T..................A...................TAT..............C.........................................................A..A..C...........................G....................T.................CC..... 22 22 , 22 22 116:>KF790264,A/Rhode Island/08/2012(H3N2))6 neuraminidase (NA) gene 117 >KF790292,A/New York/39/2012(H3N2))6 neuraminidase (NA) gene .................................G.........................................C....A..G....C................................A............T....G..............................G.......T..................A...................TAT..............C.........................................................A..A..C...........................G....................T.................CC..... 22 22 , 22 22 117:>KF790292,A/New York/39/2012(H3N2))6 neuraminidase (NA) gene 118 >KF790222,A/New York/39/2012(H3N2))6 neuraminidase (NA) gene .................................G.........................................C....A..G....C...........R....................A............T....G..............................G.......T..................A...................TAT..............C.........................................................A..A..C...........................G....................T.................CC..... 23 23 , 23 23 118:>KF790222,A/New York/39/2012(H3N2))6 neuraminidase (NA) gene 119 >KF789896,A/Kansas/16/2012(H3N2))6 neuraminidase (NA) gene ...........................................................................C....A..G....C................................A........C...T....G..............................G.......T..................A....................AT.............YC.........................................................A..A..C...........................G....................T.................C...... 21 21 , 21 21 119:>KF789896,A/Kansas/16/2012(H3N2))6 neuraminidase (NA) gene 120 >KF789935,A/Wyoming/01/2013(H3N2))6 neuraminidase (NA) gene ...........................................................................C....A..G....C................................A........C...T....G..............................G.......T..................A....................AT..............C.........................................................A..A..C...........................G....................T.................C...... 20 20 , 20 20 120:>KF789935,A/Wyoming/01/2013(H3N2))6 neuraminidase (NA) gene 121 >KF789682,A/New Jersey/08/2012(H3N2))6 neuraminidase (NA) gene ......C.C...........C......................................................C....A..G....CC................C..............A...R....C...T....G............C.................G.......T..........G.......A....................AT..............C.........................................................A..A..C...........................G....................T.................C...... 28 28 , 28 28 121:>KF789682,A/New Jersey/08/2012(H3N2))6 neuraminidase (NA) gene 122 >KF790237,A/Pennsylvania/20/2012(H3N2))6 neuraminidase (NA) gene ...........................................................................C....A..G....C.................C..............A....R.......T....G..............................G.......T..........G.......A....................AT..............C.........................................................A..A..C...........................G........G...........T.................C...... 23 23 , 23 23 122:>KF790237,A/Pennsylvania/20/2012(H3N2))6 neuraminidase (NA) gene 123 >KF790094,A/Wyoming/18/2012(H3N2))6 neuraminidase (NA) gene ............................G..............................................C....A..G....C................................A....R.......T....G..............................G.......T..................A....................AT..............C.......................................C.................A..A..C............C..............G....................T.................C...... 23 23 , 23 23 123:>KF790094,A/Wyoming/18/2012(H3N2))6 neuraminidase (NA) gene 124 >KF789559,A/Idaho/03/2013(H3N2))6 neuraminidase (NA) gene ...........................................................................C....A..G....C.....A..........................A....R.......T....G..............................G.......T..................A....................AT..............C.TT.G....................................................A..A..C.....................G.....G....................T.................C...... 25 25 , 25 25 124:>KF789559,A/Idaho/03/2013(H3N2))6 neuraminidase (NA) gene 125 >KF790519,A/Arizona/11/2012(H3N2))6 neuraminidase (NA) gene ...........................................................................C....A..G....C.....A..........................A....R.......T....G..............................G.......T..................A....................AT..............C.TT.G....................................................A..A..C.....................G.....G....................T.................C...... 25 25 , 25 25 125:>KF790519,A/Arizona/11/2012(H3N2))6 neuraminidase (NA) gene 126 >KF789643,A/New Mexico/11/2013(H3N2))6 neuraminidase (NA) gene ...........................................................................C....A..G....C.....A..........................A...R........T....G..............................G......CT..................A....................AT..............C.TT.G....................................................A..A..C.....................G.....G....................T.................C...... 26 26 , 26 26 126:>KF789643,A/New Mexico/11/2013(H3N2))6 neuraminidase (NA) gene 127 >KF790405,A/New York/60/2012(H3N2))6 neuraminidase (NA) gene .......................................A...................................C....A..G....C.....A..........................A...R........T....G..............................G..G....T..................A....................AT..............C.........................................................A..A..C.....................G.....G....................T.................C...... 24 24 , 24 24 127:>KF790405,A/New York/60/2012(H3N2))6 neuraminidase (NA) gene 128 >KF789586,A/New Jersey/04/2012(H3N2))6 neuraminidase (NA) gene ...........................................................................C....A..G....C.....A..........................A.M.R........T....G..............................G.......T..................A....................AT..............C.........................................................A..A..C.................G...G.....G....................T.................C...... 24 24 , 24 24 128:>KF789586,A/New Jersey/04/2012(H3N2))6 neuraminidase (NA) gene 129 >KF789565,A/Michigan/01/2013(H3N2))6 neuraminidase (NA) gene .............A........................................A....................C....A..G....C.....A..........................A...R........T....G........................T.....G.......T..................A..G.................AT..............C.........................................................AC.A..C.....................G.....G....................T.................C...... 27 27 , 27 27 129:>KF789565,A/Michigan/01/2013(H3N2))6 neuraminidase (NA) gene 130 >KF789844,A/Washington/07/2013(H3N2))6 neuraminidase (NA) gene .....G................................................A....................C....A..G....C.....A..........................A...R........T....G........................T.....G.......T.A................A..G.................AT..............C.........................................................A..A..C.....................G.....G....................T.................C...... 27 27 , 27 27 130:>KF789844,A/Washington/07/2013(H3N2))6 neuraminidase (NA) gene 131 >KF790387,A/Delaware/06/2013(H3N2))6 neuraminidase (NA) gene ......................................................A....................C....A..G....C.....A..........................A...R........T....G........................T.....G.......T..................A..G.................AT..............C...T.....................................................A..A..C.....................G.....G....................T.................C...... 26 26 , 26 26 131:>KF790387,A/Delaware/06/2013(H3N2))6 neuraminidase (NA) gene 132 >KF790073,A/Oregon/15/2012(H3N2))6 neuraminidase (NA) gene ......................................................A....................C....A..G....C.....A..........................A...R........T....G........................T.....G.......T..................A..G.................AT..............C.........................................................A..A..C.....................G.....G....................T.................C...... 25 25 , 25 25 132:>KF790073,A/Oregon/15/2012(H3N2))6 neuraminidase (NA) gene 133 >KF790005,A/Washington/50/2012(H3N2))6 neuraminidase (NA) gene ......................................................A....................C....A..G....C.....A..........................A...R........T....G........................T.....G.......T..................A..G.................AT..............C.........................................................A..A..C.....................G.....G....................T.................C...... 25 25 , 25 25 133:>KF790005,A/Washington/50/2012(H3N2))6 neuraminidase (NA) gene 134 >KF790158,A/Delaware/24/2012(H3N2))6 neuraminidase (NA) gene ......................................................A....................C....A..G....C.....A..........................A...R........T....G........................T.....G.......T..................A..G.................AT..............C.........................................................A..A..C.....................G.....G....................T.................C...... 25 25 , 25 25 134:>KF790158,A/Delaware/24/2012(H3N2))6 neuraminidase (NA) gene 135 >KF789549,A/Washington/06/2013(H3N2))6 neuraminidase (NA) gene ......................................................A....................C....A..G....C.....A..........................A...R........T....G........................T.....G.......T..................A..G.................AT..............C.........................................................A..A..C.....................G.....G....................T.................C...... 25 25 , 25 25 135:>KF789549,A/Washington/06/2013(H3N2))6 neuraminidase (NA) gene 136 >KF790327,A/Washington/04/2013(H3N2))6 neuraminidase (NA) gene ......................................................A....................C....A..G....C.....A..........................A...R........T....G........................T.....G.......T..................A..G.................AT..............C.........................................................A..A..C.....................G.....G....................T.................C...... 25 25 , 25 25 136:>KF790327,A/Washington/04/2013(H3N2))6 neuraminidase (NA) gene 137 >KF789814,A/Idaho/37/2012(H3N2))6 neuraminidase (NA) gene ......................................................A....................C....A..G....C.....A..........................A...R........T....G........................T.....G.......T.....................G.................AT..............C.........................................................A..A..C.....................G.....G....................T.................C...... 24 24 , 24 24 137:>KF789814,A/Idaho/37/2012(H3N2))6 neuraminidase (NA) gene 138 >KF790406,A/New Hampshire/03/2013(H3N2))6 neuraminidase (NA) gene ......................................................A....................C....A..G....C.....A..........................A...R........T....G........................T.....G.......T..................A..G.................AT..............C......C.CC...T..................CCC..C.......C..........GA..A..C..........T..........G.....G....................T.................C...... 36 36 , 36 36 138:>KF790406,A/New Hampshire/03/2013(H3N2))6 neuraminidase (NA) gene 139 >KF789620,A/California/16/2013(H3N2))6 neuraminidase (NA) gene ......................................................A....................C....A..G....C.....A.A........................A...R........T....G..........G.............T.....G.......T..................A..G.................AT..............C.........................................................A..A..C.....................G.....G....................T.................C...... 27 27 , 27 27 139:>KF789620,A/California/16/2013(H3N2))6 neuraminidase (NA) gene 140 >KF790337,A/Missouri/02/2013(H3N2))6 neuraminidase (NA) gene ......................................................A....................C....A..G....C.....A..........................A...R........T....G..........G.............T.A...G.......T..................A..G.................AT..............C.........................................................A..A..C.....................G.....G....................T.................C...... 27 27 , 27 27 140:>KF790337,A/Missouri/02/2013(H3N2))6 neuraminidase (NA) gene 141 >KF790067,A/Nebraska/02/2013(H3N2))6 neuraminidase (NA) gene ......................................................A....................C....A..G....C.....A..........................A....R.......T....G..........G.............T.A...G.......T..................A..G.................AT..............C.........................................................A..A..C.....................G.....G....................T.................C...... 27 27 , 27 27 141:>KF790067,A/Nebraska/02/2013(H3N2))6 neuraminidase (NA) gene 142 >KF790069,A/Minnesota/01/2013(H3N2))6 neuraminidase (NA) gene ......................................................A....................C....A..G....C.....A..........................A............T....G..........G.............T.A...G.......T..................A..G.................AT..............C.........................................................A..A..C.....................G.....G....................T.................C...... 26 26 , 26 26 142:>KF790069,A/Minnesota/01/2013(H3N2))6 neuraminidase (NA) gene 143 >KF790499,A/Minnesota/17/2012(H3N2))6 neuraminidase (NA) gene ......................................................A....................C....A..G....C.....A..........................A............T....G..........G.............T.A...G.......T..................A..G.................AT..............C.........................................................A..A..C.....................G.....G....................T.................C...Y.. 27 27 , 27 27 143:>KF790499,A/Minnesota/17/2012(H3N2))6 neuraminidase (NA) gene 144 >KF790151,A/Colorado/27/2012(H3N2))6 neuraminidase (NA) gene ......................................................A....................C....A..G....C.....A..........................A............T....G..........G.............T.A...G.......T...........G......A..G.................AT..............C.........................................................A..A..C.....................G.....G....................T.................C...... 27 27 , 27 27 144:>KF790151,A/Colorado/27/2012(H3N2))6 neuraminidase (NA) gene 145 >KF790358,A/Utah/03/2013(H3N2))6 neuraminidase (NA) gene ......................................................A....................C....A..G....C.....A.......................A..A............T....G..........G.............T.....G.......T..................A..G.................AT..............C....C....................................................A..A..C.....................G.....G......CC..........A.T.................C...... 30 30 , 30 30 145:>KF790358,A/Utah/03/2013(H3N2))6 neuraminidase (NA) gene 146 >KF789777,A/Washington/60/2012(H3N2))6 neuraminidase (NA) gene ......................................................A....................C....A..G....C.....A..........................A............T....G........................T.....G.......T..T...............A..G.................AT..............C.........................................................A..A..C.....................G.....G....................T.................C...... 25 25 , 25 25 146:>KF789777,A/Washington/60/2012(H3N2))6 neuraminidase (NA) gene 147 >KF790308,A/Maryland/01/2013(H3N2))6 neuraminidase (NA) gene ......................................................A....................C....A..G....C.....A..........................A....W.......T....G........................T.....G.......T..................A..G.................AT..............C.........................................................A..A..C.....................G.....G....................T.................C...... 25 25 , 25 25 147:>KF790308,A/Maryland/01/2013(H3N2))6 neuraminidase (NA) gene 148 >KF789593,A/Nevada/27/2012(H3N2))6 neuraminidase (NA) gene ......................................................A....................C....A..G....C.....A..........................A....R.......T....G........................T.....G.......T..................A..G.................AT..............C.........................................................A..A..C.....................G.....G....................T.................C...... 25 25 , 25 25 148:>KF789593,A/Nevada/27/2012(H3N2))6 neuraminidase (NA) gene 149 >KF789795,A/Washington/61/2012(H3N2))6 neuraminidase (NA) gene ......................................................A....................C....A..G....C.....A..........................A....R.......T....G........................T.....G.......T..................A..G.................AT..............C.........................................................A..A..C.....................G.....G....................T.................C...... 25 25 , 25 25 149:>KF789795,A/Washington/61/2012(H3N2))6 neuraminidase (NA) gene 150 >KF790518,A/Nevada/03/2013(H3N2))6 neuraminidase (NA) gene ...................................................A..A....................C....A..G....C.....A..........................A....R.......T....G........................T.....G.......T..................A..G.................AT..............C.........................................................A..A..C.....................G.....G....................T.................C...... 26 26 , 26 26 150:>KF790518,A/Nevada/03/2013(H3N2))6 neuraminidase (NA) gene 151 >KF790312,A/Nevada/36/2012(H3N2))6 neuraminidase (NA) gene ...................................................A..A....................C....A..G....C.....A..........................A....R.......T....G........................T.....G.......T..................A..G.................AT..............C.........................................................A..A..C.....................G.....G....................T.................C...... 26 26 , 26 26 151:>KF790312,A/Nevada/36/2012(H3N2))6 neuraminidase (NA) gene 152 >KF789827,A/Idaho/38/2012(H3N2))6 neuraminidase (NA) gene ......................................................A....................C....A..G....C..C..A.....A....................A....R.......T....G........................T.....G.......T..................A..G.................AT..............CA........................................................A..A..C.....................G.....G....................T.................C...... 28 28 , 28 28 152:>KF789827,A/Idaho/38/2012(H3N2))6 neuraminidase (NA) gene 153 >KF789956,A/Montana/01/2013(H3N2))6 neuraminidase (NA) gene ......................................................A....................C....A..G....C..C..A..........................A............T....G........................T.....G.......T..................A..G.................AT..............CA........................................................A..A..C.....................G.....G....................T.................C...... 26 26 , 26 26 153:>KF789956,A/Montana/01/2013(H3N2))6 neuraminidase (NA) gene 154 >KF789540,A/Colorado/02/2013(H3N2))6 neuraminidase (NA) gene ......................................................A....................C....A..G....C..C..A..........................A............T....G........................T.....G.......T..................A..G.................AT..............CA........................................................A..A..C.....................G.....G....................T.................C...... 26 26 , 26 26 154:>KF789540,A/Colorado/02/2013(H3N2))6 neuraminidase (NA) gene 155 >KF790496,A/Washington/53/2012(H3N2))6 neuraminidase (NA) gene ......................................................A....................C....A..G....C..C..A..........................A...R........T....G........................T.....G.......T..................A..G.................AT..............CA........................................................A..A..C.....................G.....G....................T.................C...... 27 27 , 27 27 155:>KF790496,A/Washington/53/2012(H3N2))6 neuraminidase (NA) gene 156 >KF790449,A/Utah/27/2012(H3N2))6 neuraminidase (NA) gene ......................................................A....................C....A..G....C.....A.........C................A...R........T....G........................T.....G.......T..................A..G.................AT..............CA........................................................A..A..C.....................G.....G....................T.................C...... 27 27 , 27 27 156:>KF790449,A/Utah/27/2012(H3N2))6 neuraminidase (NA) gene 157 >KF790493,A/Idaho/24/2012(H3N2))6 neuraminidase (NA) gene ......................................................A....................C....A..G....C.....A..........................A.Y.R........T....G........................T.....G.......T..................A..G.................AT.......T......CA........................................................A..A..C.....................G.....G....................T.................C...... 28 28 , 28 28 157:>KF790493,A/Idaho/24/2012(H3N2))6 neuraminidase (NA) gene 158 >KF790108,A/Idaho/23/2012(H3N2))6 neuraminidase (NA) gene ......................................................A....................C....A..G....C.....A..........................A.Y..........T....G........................T.....G.......T..................A..G.................AT..............CA........................................................A..A..C.....................G.....G....................T.................C...... 26 26 , 26 26 158:>KF790108,A/Idaho/23/2012(H3N2))6 neuraminidase (NA) gene 159 >KF789746,A/Alaska/01/2013(H3N2))6 neuraminidase (NA) gene ...............A......................................A....................C....A..G....C.....A..........................A.Y..........T....G........................T.....G.......T..................A..G.................AT..............C.........................................................A..A..CA....................G.....G....................T.................C...... 27 27 , 27 27 159:>KF789746,A/Alaska/01/2013(H3N2))6 neuraminidase (NA) gene 160 >KF790346,A/Utah/07/2013(H3N2))6 neuraminidase (NA) gene ...........................................................................C....A..G....C................................A.A..........T....G.........A....................G.......T..................A..G.................AT..............C.........................................................A..A..C...........................G....................T.................C...... 22 22 , 22 22 160:>KF790346,A/Utah/07/2013(H3N2))6 neuraminidase (NA) gene 161 >KF789920,A/Maryland/30/2012(H3N2))6 neuraminidase (NA) gene ............................................G.............A................C....A..G....C......T.......T.................A.T..........T....G..............................G.......T..................A....................AT..............C.....................................C...................A..A..C.......T...................G....................T.................C...... 26 26 , 26 26 161:>KF789920,A/Maryland/30/2012(H3N2))6 neuraminidase (NA) gene 162 >KF790437,A/Oregon/11/2012(H3N2))6 neuraminidase (NA) gene ............................................G..............................C....A..G....C..............T.................A....R.......T....GC.............................G.......T..................A....................AT..............C................................................A........A..A..C.......T.................A.G....................T.................C...... 26 26 , 26 26 162:>KF790437,A/Oregon/11/2012(H3N2))6 neuraminidase (NA) gene 163 >KF790266,A/Oklahoma/05/2012(H3N2))6 neuraminidase (NA) gene ............................................G..............................C....A..G....C................................A............T....GC.............................G.......T..................A....................AT..............C..................................................T......A..A..C.......T....Y............A.G....................T..A..........Y...C...... 27 27 , 27 27 163:>KF790266,A/Oklahoma/05/2012(H3N2))6 neuraminidase (NA) gene 164 >KF789876,A/New Hampshire/21/2012(H3N2))6 neuraminidase (NA) gene ...........................................................................C....A..G....C................................A............T....G..............................G.......T..................A....................AT..............C.........................................................A..A..C...........................G....................T.................C...... 19 19 , 19 19 164:>KF789876,A/New Hampshire/21/2012(H3N2))6 neuraminidase (NA) gene 165 >KF789584,A/Florida/46/2012(H3N2))6 neuraminidase (NA) gene ...........................................................................C....A..G....C................................A............T....G..............................G.......T..................A....................AT..............C.........................................................A..A..C...........................G....................T.................C...... 19 19 , 19 19 165:>KF789584,A/Florida/46/2012(H3N2))6 neuraminidase (NA) gene 166 >KF790471,A/North Dakota/01/2013(H3N2))6 neuraminidase (NA) gene ...........................................................................C....A..G....C................................A............T....G..............................G.......T..................A....................AT..............C.........................................................A..A..C...........................G....................T.................C...... 19 19 , 19 19 166:>KF790471,A/North Dakota/01/2013(H3N2))6 neuraminidase (NA) gene 167 >KF789835,A/Wisconsin/06/2013(H3N2))6 neuraminidase (NA) gene ...........................................................................C....A..G....C................................A............T....G..............................G.......T..................A....................AT..............C.........................................................A..A..C...........................G....................T.................C...... 19 19 , 19 19 167:>KF789835,A/Wisconsin/06/2013(H3N2))6 neuraminidase (NA) gene 168 >KF789821,A/Connecticut/13/2012(H3N2))6 neuraminidase (NA) gene ...........................................................................C....A..G....C................................A............T....G..............................G.......T..................A....................AT..............C.........................................................A..A..C...........................G....................T.................C...... 19 19 , 19 19 168:>KF789821,A/Connecticut/13/2012(H3N2))6 neuraminidase (NA) gene 169 >KF790289,A/Iowa/15/2012(H3N2))6 neuraminidase (NA) gene ...........................................................................C....A..G....C................................A............T....G..............................G...A...T..................A....................AT..............C.................A.......................................A..A..C...........................G....................T.................C...... 21 21 , 21 21 169:>KF790289,A/Iowa/15/2012(H3N2))6 neuraminidase (NA) gene 170 >KF789797,A/Iowa/22/2012(H3N2))6 neuraminidase (NA) gene ...........................................................................C....A..G....C................................A...R........T....G..............................G...A...T..................A....................AT..............C.........................................................A..A..C...........................G....................T.................C...... 21 21 , 21 21 170:>KF789797,A/Iowa/22/2012(H3N2))6 neuraminidase (NA) gene 171 >KF790383,A/New Mexico/24/2012(H3N2))6 neuraminidase (NA) gene ...........................................................................C....A..G.G..C................................A...R........T....G..............................G.......T..................A....................AT..............C.........................................................A..A..C...........................G....................T.................C...... 21 21 , 21 21 171:>KF790383,A/New Mexico/24/2012(H3N2))6 neuraminidase (NA) gene 172 >KF790306,A/Nebraska/15/2012(H3N2))6 neuraminidase (NA) gene ...........C...............................................................C....A..G....C................................A...R........T....G..............................G.......T..................A....................AT..............C.........................................................A..A..C...........................G....................T.................C...... 21 21 , 21 21 172:>KF790306,A/Nebraska/15/2012(H3N2))6 neuraminidase (NA) gene 173 >KF790421,A/Nebraska/03/2013(H3N2))6 neuraminidase (NA) gene .......A...C...............................................................C....A..G....C................................A............T....G..............................G.......T..................A....................AT..............C.........................................................A..A..C...........................G.........A..........T.................C...... 22 22 , 22 22 173:>KF790421,A/Nebraska/03/2013(H3N2))6 neuraminidase (NA) gene 174 >KF790476,A/Iowa/01/2013(H3N2))6 neuraminidase (NA) gene ...........................................................................C....A..G....C................................A.A....A.....T....G..............................G.......T..................A....................AT..............C.........................................................A..A..C...........................G.........A..........T.................C...... 22 22 , 22 22 174:>KF790476,A/Iowa/01/2013(H3N2))6 neuraminidase (NA) gene 175 >KF789878,A/Virginia/03/2013(H3N2))6 neuraminidase (NA) gene ...........................................................................C....A..G....C.................C..............A.A..........T....G..............................G.......T..................A....................AT..............C.........................................................A..A..C...........................G....................T.................C...... 21 21 , 21 21 175:>KF789878,A/Virginia/03/2013(H3N2))6 neuraminidase (NA) gene 176 >KF790128,A/North Carolina/06/2013(H3N2))6 neuraminidase (NA) gene ...........................................................................C....A..G....C.................C..............A.Y..........T....G..............................G.......T..................A....................AT..............C..............C..........................................A..AT.C...........................G....................T.................C...... 23 23 , 23 23 176:>KF790128,A/North Carolina/06/2013(H3N2))6 neuraminidase (NA) gene 177 >KF790382,A/Minnesota/04/2013(H3N2))6 neuraminidase (NA) gene ...........................................................................C....A..G....C.................C..............A............T....G..............................G.......T..................A........G...........AT..............C..............C..........................................A..A..C...........................G....................T.................C...... 22 22 , 22 22 177:>KF790382,A/Minnesota/04/2013(H3N2))6 neuraminidase (NA) gene 178 >KF789962,A/Rhode Island/02/2013(H3N2))6 neuraminidase (NA) gene .......................................................................T...C....A..G....C...........A.....C..............A............T....G..............................G.......T..................A....................AT..............C.........................................................A..A..C...........................G....................T.................C...... 22 22 , 22 22 178:>KF789962,A/Rhode Island/02/2013(H3N2))6 neuraminidase (NA) gene 179 >KF790012,A/Massachusetts/07/2013(H3N2))6 neuraminidase (NA) gene ...........................................................................C....A..G....C............T....C......M.......A............T....G..............................G.......T..................A....................AT..............C.........................................................A..A..C...........................G....................T.................C...... 22 22 , 22 22 179:>KF790012,A/Massachusetts/07/2013(H3N2))6 neuraminidase (NA) gene 180 >KF790146,A/Arkansas/13/2013(H3N2))6 neuraminidase (NA) gene ...........................................................................C....A..G....C............T....CT.............A............T....G..............................G.......T..................A....................AT..............C.........................................................A.AA..C...........................G....................T.....C...........C...... 24 24 , 24 24 180:>KF790146,A/Arkansas/13/2013(H3N2))6 neuraminidase (NA) gene 181 >KF789733,A/New York/04/2013(H3N2))6 neuraminidase (NA) gene ...........................................................................C....A..G....C................TCT.............A...R........T....G..............................G.......T..................A....................AT..............C.........................................................A..A..C...........................G....................T.....C...........C...... 24 24 , 24 24 181:>KF789733,A/New York/04/2013(H3N2))6 neuraminidase (NA) gene 182 >KF790484,A/Arkansas/06/2013(H3N2))6 neuraminidase (NA) gene ...........................................................................C....A..G....C.................CT.............A...R........T....G..............................G.......T..................A....................AT..............C.........................................................A.AA..C...........................G....................T.....C...........C...... 24 24 , 24 24 182:>KF790484,A/Arkansas/06/2013(H3N2))6 neuraminidase (NA) gene 183 >KF789979,A/Arkansas/04/2013(H3N2))6 neuraminidase (NA) gene ...........................................................................C....A..G....C.................CT.............A...R........T....G..............................G.......T..................A....................AT..............C.........................................................A.AA..C...........................G....................T.....C...........C...... 24 24 , 24 24 183:>KF789979,A/Arkansas/04/2013(H3N2))6 neuraminidase (NA) gene 184 >KF789980,A/Arkansas/03/2013(H3N2))6 neuraminidase (NA) gene ...........................................................................C....A..G....C.................CT.............A...R........T....G..............................G.......T..................A....................AT..............C.........................................................A.AA..C...........................G....................T.....C...........C...... 24 24 , 24 24 184:>KF789980,A/Arkansas/03/2013(H3N2))6 neuraminidase (NA) gene 185 >KF790033,A/Arkansas/07/2013(H3N2))6 neuraminidase (NA) gene .........G.................................................................C....A..G....C.................CT.............A...R........T....G..............................G.......T..................A....................AT..............C.........................................................A.AA..C...........................G....................T.....C...........C...... 25 25 , 25 25 185:>KF790033,A/Arkansas/07/2013(H3N2))6 neuraminidase (NA) gene 186 >KF790511,A/Maryland/33/2012(H3N2))6 neuraminidase (NA) gene ...G.................................................................T.....C....A..G....C................................A...R........T....G..............................G.......T..................A....................AT..............C......................C..................................A.AA..C...........................G....................T.................C...... 24 24 , 24 24 186:>KF790511,A/Maryland/33/2012(H3N2))6 neuraminidase (NA) gene 187 >KF790121,A/North Carolina/02/2013(H3N2))6 neuraminidase (NA) gene ...........................................................................C....A..G....C................................A...R........T....G...........................A..G.......T..................A....................AT..............C......................C..................................A..A..C...........................G....................T.................C...... 22 22 , 22 22 187:>KF790121,A/North Carolina/02/2013(H3N2))6 neuraminidase (NA) gene 188 >KF789622,A/Oklahoma/06/2013(H3N2))6 neuraminidase (NA) gene ...........................................................................C....A..G....C................................A...R........T....G...........................A..G.......T..................A....................AT..............C......................C..................................A..A..C...........................G....................T.................C...... 22 22 , 22 22 188:>KF789622,A/Oklahoma/06/2013(H3N2))6 neuraminidase (NA) gene 189 >KF790013,A/New Mexico/08/2013(H3N2))6 neuraminidase (NA) gene ...........................................................................C....A..G....C................................A....R.......T....G...........................A..G.......T.................TA....................AT..............C......................C...............................A..A..A..C...........................G....................T.................C...... 24 24 , 24 24 189:>KF790013,A/New Mexico/08/2013(H3N2))6 neuraminidase (NA) gene 190 >KF789676,A/Missouri/13/2012(H3N2))6 neuraminidase (NA) gene ...G.................................................T.....................C....A..G....C................................A....R.......T....G..............................G.......T..................A....................AT..............C......................................................A..A..A..C...........................G....................T.................C...... 23 23 , 23 23 190:>KF789676,A/Missouri/13/2012(H3N2))6 neuraminidase (NA) gene 191 >KF789702,A/Tennessee/02/2013(H3N2))6 neuraminidase (NA) gene .....................................................T.....................C....A..G....C...............C................A....RC......T....G..............................G.......T..................A....................AT..............C......................................................A..A..A..C...........................G.A..................T.................C...... 25 25 , 25 25 191:>KF789702,A/Tennessee/02/2013(H3N2))6 neuraminidase (NA) gene 192 >KF790020,A/Michigan/03/2013(H3N2))6 neuraminidase (NA) gene .....................................................T.....................C....A..G....C...............C................A............T....G..............................G.......T..................A....................AT..............C......................................................A..A..A..C.......A...................G....................T.................C...... 23 23 , 23 23 192:>KF790020,A/Michigan/03/2013(H3N2))6 neuraminidase (NA) gene 193 >KF790530,A/Kansas/01/2013(H3N2))6 neuraminidase (NA) gene .....................................................T.....................C....A..G....C................................A............T....G..............................G.......T..................A....................AT..............C......................................................A..A..A..C...........................G....................T.................C...... 21 21 , 21 21 193:>KF790530,A/Kansas/01/2013(H3N2))6 neuraminidase (NA) gene 194 >KF790359,A/Mississippi/01/2013(H3N2))6 neuraminidase (NA) gene .....................................................T.....................C....A..G....C................................A............T....G..............................G.......T..................A....................AT..............C......................................................A..A..A..C...........................G....................T.................C...... 21 21 , 21 21 194:>KF790359,A/Mississippi/01/2013(H3N2))6 neuraminidase (NA) gene 195 >KF790390,A/Wisconsin/05/2013(H3N2))6 neuraminidase (NA) gene .....................................................T.....................C....A..G....C................................A...........GT....G..............................G.......T..................A....................AT..............C......................................................A..A..A..C...........................G....................T.................C...... 22 22 , 22 22 195:>KF790390,A/Wisconsin/05/2013(H3N2))6 neuraminidase (NA) gene 196 >KF789789,A/Nevada/28/2012(H3N2))6 neuraminidase (NA) gene .....................................................T...T.................C....A..G....C................................A............T....G..............................G.......T..................A...................TAT..............C......................................................A..A..A..C...........................G....................T.................C...... 23 23 , 23 23 196:>KF789789,A/Nevada/28/2012(H3N2))6 neuraminidase (NA) gene 197 >KF789617,A/Vermont/02/2013(H3N2))6 neuraminidase (NA) gene .....................................................T.....................C....A..G....C................................A............T....G..............................G.......T..................A...................TATT.............C......................................................A..A..A..C...........................G....................T.................C...... 23 23 , 23 23 197:>KF789617,A/Vermont/02/2013(H3N2))6 neuraminidase (NA) gene 198 >KF790071,A/Colorado/01/2013(H3N2))6 neuraminidase (NA) gene .....................................................T.....................C....A..G....C................................A............T....G..............................G.......T................G.A............G.......AT..............C......................................................A..A..A..C...........................G....................T.................C...... 23 23 , 23 23 198:>KF790071,A/Colorado/01/2013(H3N2))6 neuraminidase (NA) gene 199 >KF789632,A/Kansas/02/2013(H3N2))6 neuraminidase (NA) gene .....................................................T.....................C....A..G....C................................A............T....G..............................G.......T..................A....................AT..............C......................................................A..A..A..C........................A..G.....T..............T.................C...... 23 23 , 23 23 199:>KF789632,A/Kansas/02/2013(H3N2))6 neuraminidase (NA) gene 200 >KF790162,A/Wisconsin/38/2012(H3N2))6 neuraminidase (NA) gene .....................................................T.....................C....A..G....C................................A............T....G..............................G.......T..................A....................AT..............C......................................................A..A..A..C...........................G.....T..............T.................C...... 22 22 , 22 22 200:>KF790162,A/Wisconsin/38/2012(H3N2))6 neuraminidase (NA) gene 201 >KF789817,A/Illinois/15/2012(H3N2))6 neuraminidase (NA) gene .....................................................T.....................C....A..G....C................................A............T....G..............................G.......T..................A....................AT..............C......................................................A..A..A..C...........................G.....T..............T.................C...... 22 22 , 22 22 201:>KF789817,A/Illinois/15/2012(H3N2))6 neuraminidase (NA) gene 202 >KF789963,A/Illinois/01/2013(H3N2))6 neuraminidase (NA) gene .....................................................T.....................C....A..G....C................................A...R........T....G..............................G.......T..................A....................AT..............C......................................................A..A..A..C...........................G.....T..............T.................C...... 23 23 , 23 23 202:>KF789963,A/Illinois/01/2013(H3N2))6 neuraminidase (NA) gene 203 >KF789734,A/Minnesota/03/2013(H3N2))6 neuraminidase (NA) gene .....................................................T.....................C....A..G....C................................A...R........T....G..............................G.......T..................A....................AT..............C......................................................A..A..A..C...........................G.....T..............T.................C...... 23 23 , 23 23 203:>KF789734,A/Minnesota/03/2013(H3N2))6 neuraminidase (NA) gene 204 >KF790456,A/Louisiana/01/2013(H3N2))6 neuraminidase (NA) gene .....................................................T.....................C....A..G....C................................A...R........T....G..............................G.......T..................A....................AT..............C......................................................A..A..A..C...........................G....RT..............T.................C...... 24 24 , 24 24 204:>KF790456,A/Louisiana/01/2013(H3N2))6 neuraminidase (NA) gene 205 >KF790374,A/Ohio/92/2012(H3N2))6 neuraminidase (NA) gene .....................................................T.....................C....A..G....C................................A...R........T....G..............................G.......T..................A....................AT..............C......................................................A..A..A..C...........................G....................T.................C...... 22 22 , 22 22 205:>KF790374,A/Ohio/92/2012(H3N2))6 neuraminidase (NA) gene 206 >KF789566,A/California/14/2013(H3N2))6 neuraminidase (NA) gene .....................................................T.....................C....A..G....C................................A...R........T....G..............................G.......T..................A....................AT..............C......................................................A..A..A..C...........................G....................T.................C...... 22 22 , 22 22 206:>KF789566,A/California/14/2013(H3N2))6 neuraminidase (NA) gene 207 >KF790322,A/Pennsylvania/02/2013(H3N2))6 neuraminidase (NA) gene .....................................................T.....................C....A..G....C................................A...R........T....G..............................G.......T..................A....................AT..............C......................................................A..A..A..C...........................G....................T.................C...... 22 22 , 22 22 207:>KF790322,A/Pennsylvania/02/2013(H3N2))6 neuraminidase (NA) gene 208 >KF790442,A/Wisconsin/41/2012(H3N2))6 neuraminidase (NA) gene .....................................................T.....................C....A..G....C................................A...R........T....G..............................G.......T..................A....................AT..............C......................................................A..A..A..C...........................G....................T.................C...... 22 22 , 22 22 208:>KF790442,A/Wisconsin/41/2012(H3N2))6 neuraminidase (NA) gene 209 >KF789638,A/Connecticut/01/2013(H3N2))6 neuraminidase (NA) gene .....................................................T.....................C....A..G....C................................A...R........T....G..............................G.......T..................A....................AT..............C......................................................A..A..A..C...........................G....................T.................C...... 22 22 , 22 22 209:>KF789638,A/Connecticut/01/2013(H3N2))6 neuraminidase (NA) gene 210 >KF790460,A/California/10/2013(H3N2))6 neuraminidase (NA) gene .....................................................T.....................C....A..G....C................................A...R........T....G..............................G.......T..................A....................AT..............C......................................................A..A..A..C...........................G....................T.................C...... 22 22 , 22 22 210:>KF790460,A/California/10/2013(H3N2))6 neuraminidase (NA) gene 211 >KF789625,A/Louisiana/02/2013(H3N2))6 neuraminidase (NA) gene .....................................................T.....................C....A..G....C................................A...R........T....G..............................G.......T..................A....................AT..............C...............................A......................A..A..A..C...........................G....................T.................C...... 23 23 , 23 23 211:>KF789625,A/Louisiana/02/2013(H3N2))6 neuraminidase (NA) gene 212 >KF789705,A/Colorado/21/2012(H3N2))6 neuraminidase (NA) gene .....................................................T.....................C....A..G....C................................A.A..........T....G..............................G.......T..................A....................AT..............C............................C.........................A..A..A..C...........................G....................T.................C...... 23 23 , 23 23 212:>KF789705,A/Colorado/21/2012(H3N2))6 neuraminidase (NA) gene 213 >KF790335,A/District Of Columbia/01/2012(H3N2))6 neuraminidase (NA) gene .....................................................T.....................C....A..G....C................................A.M..........T....G..............................G.......T..................A....................AT..............C......................................................A..A..A..C...........................G....................T.................C...... 22 22 , 22 22 213:>KF790335,A/District Of Columbia/01/2012(H3N2))6 neuraminidase (NA) gene 214 >KF790458,A/New Mexico/04/2013(H3N2))6 neuraminidase (NA) gene .....................................................T............G........C....A..G....C...A............................A.Y..........T....G.....A........................G.......T..................A....................AT..............C......................................................A..A..A..C...........................G....................T.................C...... 25 25 , 25 25 214:>KF790458,A/New Mexico/04/2013(H3N2))6 neuraminidase (NA) gene 215 >KF789657,A/Oregon/01/2013(H3N2))6 neuraminidase (NA) gene .....................................................T............G........C....A..G....C................................A............T....G..............................G.......T..................A....................AT..............C......................................................A..A..A..C................................................T.................C...... 21 21 , 21 21 215:>KF789657,A/Oregon/01/2013(H3N2))6 neuraminidase (NA) gene 216 >KF789655,A/Oregon/01/2013(H3N2))6 neuraminidase (NA) gene .....................................................T............G........C....A..G....C................................A............T....G..............................G.......T..................A....................AT..............C......................................................A..A..A..C................................................T.................C...... 21 21 , 21 21 216:>KF789655,A/Oregon/01/2013(H3N2))6 neuraminidase (NA) gene 217 >KF790284,A/North Dakota/05/2012(H3N2))6 neuraminidase (NA) gene .....................................................T................T....C....A..G....C................................A............T....G..............................G.......T..................A....................AT..............C......................................................A..A..A..C...........................G....................T.................C...... 22 22 , 22 22 217:>KF790284,A/North Dakota/05/2012(H3N2))6 neuraminidase (NA) gene 218 >KF790350,A/Mississippi/02/2013(H3N2))6 neuraminidase (NA) gene .....................................................T.....................C....A..G....C................................A..C.........T....G..............................G.......T..................A....................AT..............C......................................................A..A..A..C...........................G....................T.................C...... 22 22 , 22 22 218:>KF790350,A/Mississippi/02/2013(H3N2))6 neuraminidase (NA) gene 219 >KF789758,A/Michigan/32/2012(H3N2))6 neuraminidase (NA) gene .....................................................T.....................C....A..G....C................................A..C.........T....G..............................G.......T..................A....................AT..............C......................................................A..A..A..C...........................G....................T.................C...... 22 22 , 22 22 219:>KF789758,A/Michigan/32/2012(H3N2))6 neuraminidase (NA) gene 220 >KF789881,A/Maine/11/2012(H3N2))6 neuraminidase (NA) gene .....................................................T.....................C....A..G....C................................A..CA........T....G.........A....................G.......T..................A....................AT..............C....................G.................................A..A..A..CA..........................G....................T...G.............C...... 27 27 , 27 27 220:>KF789881,A/Maine/11/2012(H3N2))6 neuraminidase (NA) gene 221 >KF790504,A/California/12/2013(H3N2))6 neuraminidase (NA) gene .....................................................T......G..............C....A..G....C.....................A..........A..CR........T....G..............................G.......T..................A....................AT..............C...................................A..................A..A..A..CA..........................G....................T.................C...... 27 27 , 27 27 221:>KF790504,A/California/12/2013(H3N2))6 neuraminidase (NA) gene 222 >KF790045,A/Georgia/03/2013(H3N2))6 neuraminidase (NA) gene ......................................T..............T.....................C....A..G....C................................A...R........T....G.C........................A...G....T..T..................A....................AT..........T...C..........................T..............................A..A..CA..........................G....................T.................C...... 28 28 , 28 28 222:>KF790045,A/Georgia/03/2013(H3N2))6 neuraminidase (NA) gene 223 >KF790139,A/Georgia/03/2013(H3N2))6 neuraminidase (NA) gene ......................................T..............T.....................C....A..G....C................................A............T....G.C........................A...G....T..T..................A....................AT..........T...C..........................T..............................A..A..CA..........................G....................T.................C...... 27 27 , 27 27 223:>KF790139,A/Georgia/03/2013(H3N2))6 neuraminidase (NA) gene 224 >KF789857,A/Kansas/04/2013(H3N2))6 neuraminidase (NA) gene .....................................................T.....................C....A..G....C................................A....R.......T....G.C..............A.............G....T..T..................A....................AT..............C.........................................................A..A..C...........................G....................T.................C...... 24 24 , 24 24 224:>KF789857,A/Kansas/04/2013(H3N2))6 neuraminidase (NA) gene 225 >KF790521,A/Kansas/11/2012(H3N2))6 neuraminidase (NA) gene .....................................................T.....................C....A..G.G..C................................A....R.......T....G.C.................................T..T..................A....................AT..............C.........................................................A..A..C...........................G....................T.................C...... 23 23 , 23 23 225:>KF790521,A/Kansas/11/2012(H3N2))6 neuraminidase (NA) gene 226 >KF790031,A/Nevada/05/2013(H3N2))6 neuraminidase (NA) gene .....................................................T.....................C....A..GT...C................................A...A........T....G.C............................G....T..T..................AG...................AT..............C.........................................................A..A..C...........................G....................T.................C...... 25 25 , 25 25 226:>KF790031,A/Nevada/05/2013(H3N2))6 neuraminidase (NA) gene 227 >KF790016,A/New Mexico/09/2013(H3N2))6 neuraminidase (NA) gene .....................................................T.....................C....A..G....C................................A...R........T....G.C............................G....T..T..................AG...................AT..............C.........................................................A..A..C...........................G....................T.................C...... 24 24 , 24 24 227:>KF790016,A/New Mexico/09/2013(H3N2))6 neuraminidase (NA) gene 228 >KF790468,A/California/22/2013(H3N2))6 neuraminidase (NA) gene ...................T.................................TA....................C....A..G....C................................A...R........T....G.C.T..........................G....T..T..................A...............C....AT..............C....................................G....................A..A..C..................C........G....................T.................C...... 29 29 , 29 29 228:>KF790468,A/California/22/2013(H3N2))6 neuraminidase (NA) gene 229 >KF790192,A/Alaska/04/2013(H3N2))6 neuraminidase (NA) gene ...................T.................................TA....................C....A..G....C................................A...R........T....G.C................A...........G....T..T..................A..G.................AT..............C.........................................................A..A..C..................C........G....................T.................C...... 28 28 , 28 28 229:>KF790192,A/Alaska/04/2013(H3N2))6 neuraminidase (NA) gene 230 >KF789855,A/Minnesota/05/2013(H3N2))6 neuraminidase (NA) gene ......................G..............................T.....................C....A..G....C................................A...R........T....G.C................A..........GG.G..T..T..................A....................AT..............C.........................................................A..A..C...........................G....................T.................C...... 27 27 , 27 27 230:>KF789855,A/Minnesota/05/2013(H3N2))6 neuraminidase (NA) gene 231 >KF790150,A/Alabama/07/2013(H3N2))6 neuraminidase (NA) gene ......................G..............................T.....................C....A..G....C................................A....R.......T....G..............................G.......T..................A.........T..........AT..............C....................................................G....A..A.AC...........................G....................T.................C...... 25 25 , 25 25 231:>KF790150,A/Alabama/07/2013(H3N2))6 neuraminidase (NA) gene 232 >KF789561,A/Nevada/04/2013(H3N2))6 neuraminidase (NA) gene ......................G..............................T.....................C....A..G....C................................A...R........T....G.................A............G.......T..................A.........T..........AT..............C....................................................G....A..A.AC...........................G....................T.................C...... 26 26 , 26 26 232:>KF789561,A/Nevada/04/2013(H3N2))6 neuraminidase (NA) gene 233 >KF789592,A/Indiana/164/2012(H3N2))6 neuraminidase (NA) gene .....................................................T.....................C....A..G....C................................A...R........T....G..............................GC......T..................A.........T..........AT..............C....................................................G....A..A..C................C..........G....................T.................C...... 25 25 , 25 25 233:>KF789592,A/Indiana/164/2012(H3N2))6 neuraminidase (NA) gene 234 >KF790259,A/Indiana/162/2012(H3N2))6 neuraminidase (NA) gene .....................................................T.....................C....A..G....C................................A...R........T....G..............................GC......T..................A.........T..........AT.........A....C....................................................G....A..A..C................C..........G....................T.................C...... 26 26 , 26 26 234:>KF790259,A/Indiana/162/2012(H3N2))6 neuraminidase (NA) gene 235 >KF790103,A/Colorado/18/2012(H3N2))6 neuraminidase (NA) gene .....................................................T.....................C.G..A..G....C................................A...R........T....G..............................G.......T..................A.........T..........AT..............C...............................................G....G....A..A..C.......................A...G....................T.................C...... 26 26 , 26 26 235:>KF790103,A/Colorado/18/2012(H3N2))6 neuraminidase (NA) gene 236 >KF790199,A/Colorado/18/2012(H3N2))6 neuraminidase (NA) gene .....................................................T.....................C.G..A..G....C................................A............T....G..............................G.......T..................A.........T..........AT..............C...............................................G....G....A..A..C.......................A...G....................T.................C...... 25 25 , 25 25 236:>KF790199,A/Colorado/18/2012(H3N2))6 neuraminidase (NA) gene 237 >KF790523,A/California/11/2013(H3N2))6 neuraminidase (NA) gene .....................................................T.....................C....A..G....C.............................A..A...A........T....G.......................C......G.......T..................A.........T..........AT..............C.........................................................A..A..C...........................G...................GT.................C...... 25 25 , 25 25 237:>KF790523,A/California/11/2013(H3N2))6 neuraminidase (NA) gene 238 >KF789563,A/California/13/2013(H3N2))6 neuraminidase (NA) gene .....................................................T..T..................C....A..G....C.............................A..A...R........T....G..............................G.......T..................A.........T..........AT..............C............C...............................A............A..A..C...........................G....................T.................C...... 26 26 , 26 26 238:>KF789563,A/California/13/2013(H3N2))6 neuraminidase (NA) gene 239 >KF790529,A/Idaho/02/2013(H3N2))6 neuraminidase (NA) gene ......................................A..............T.....................C....A..G....C.............................A..A...R........T....G..............................G.......T..................A.........T..........AT..............C............C............................................A..A..C...........................G....................T.................C...... 25 25 , 25 25 239:>KF790529,A/Idaho/02/2013(H3N2))6 neuraminidase (NA) gene 240 >KF789601,A/West Virginia/20/2012(H3N2))6 neuraminidase (NA) gene .....................................................T.....................C....A..G....C.............................A..A...R........T....G..............................G.......T..................A.........T..........AT..............C............C............................................A..A..C...........................G....................T.................C...... 24 24 , 24 24 240:>KF789601,A/West Virginia/20/2012(H3N2))6 neuraminidase (NA) gene 241 >KF789913,A/California/46/2012(H3N2))6 neuraminidase (NA) gene .....................................................T.....................C....A..G....C.............................A..A...R........T....G..............................G.......T..................A.........T..........AT..............C............C............................................A..A..C...........................G....................T.................C...... 24 24 , 24 24 241:>KF789913,A/California/46/2012(H3N2))6 neuraminidase (NA) gene 242 >KF789724,A/Missouri/04/2013(H3N2))6 neuraminidase (NA) gene .....................................................T.....................C....A..G....C.............................A..A...R........T....G..............................G.......T..................A.........T..........AT..............C............C............................................A..A..C...........................G....................T.................C...... 24 24 , 24 24 242:>KF789724,A/Missouri/04/2013(H3N2))6 neuraminidase (NA) gene 243 >KF789764,A/South Dakota/12/2012(H3N2))6 neuraminidase (NA) gene .....................................................T.....................C....A..G....C.............................A..A...R........T....G..............................G.......T..................A.........T..........AT..............C............C............................................A..A..C...........................G....................T.................C...... 24 24 , 24 24 243:>KF789764,A/South Dakota/12/2012(H3N2))6 neuraminidase (NA) gene 244 >KF789589,A/North Carolina/24/2012(H3N2))6 neuraminidase (NA) gene ....................................T................T.....................C....A..G....C.............................A..A...R........T....G..............................G.......T..................A.........T..........AT..............C............C............................................A..A..C...........................G....................T.................C...... 25 25 , 25 25 244:>KF789589,A/North Carolina/24/2012(H3N2))6 neuraminidase (NA) gene 245 >KF790477,A/South Dakota/01/2013(H3N2))6 neuraminidase (NA) gene ................................A....................T.....................C....A..G....C.............................A..A...R........T....G..............................G.......T..................A.........T..........AT..............C............C............................................A..A..C....A......................G....................T.................C...... 26 26 , 26 26 245:>KF790477,A/South Dakota/01/2013(H3N2))6 neuraminidase (NA) gene 246 >KF789669,A/Nebraska/11/2012(H3N2))6 neuraminidase (NA) gene ................................A....................T.....................C....A..G....C.............................A..A...R........T....G..............................G.......T..................A.........T..........AT..............C............C............................................A..A..C....A......................G....................T.................C...... 26 26 , 26 26 246:>KF789669,A/Nebraska/11/2012(H3N2))6 neuraminidase (NA) gene 247 >KF789936,A/North Dakota/08/2012(H3N2))6 neuraminidase (NA) gene ................................A....................T.....................C....A..G....C.............................A..A............T....G..............................G.......T..................A.........T..........AT..............C............C............................................A..A..C....A......................G....................T.................C...... 25 25 , 25 25 247:>KF789936,A/North Dakota/08/2012(H3N2))6 neuraminidase (NA) gene 248 >KF790007,A/South Dakota/16/2012(H3N2))6 neuraminidase (NA) gene .....................................................T.....................C....A..G....C.............................A..A............T....G..............................G.......T..................A.........T..........AT..............C............C............................................A..A..C....A......................G....................T.................C...... 24 24 , 24 24 248:>KF790007,A/South Dakota/16/2012(H3N2))6 neuraminidase (NA) gene 249 >KF790313,A/New Mexico/23/2012(H3N2))6 neuraminidase (NA) gene ................C....................................T.....................C....A..G....C.............................A..A.....A......T....G..............................G.......T..................A.........T..........AT..............C............C............................................A..A..C....A......................G....................T.................C...... 26 26 , 26 26 249:>KF790313,A/New Mexico/23/2012(H3N2))6 neuraminidase (NA) gene 250 >KF790441,A/Wyoming/20/2012(H3N2))6 neuraminidase (NA) gene .....................................................T.....................C....A..G....C.............................A..A............T....G..............................G.......T..................A.........T..........AT..............C............C...A........................................A..A..C...........................G....................C.................C...... 24 24 , 24 24 250:>KF790441,A/Wyoming/20/2012(H3N2))6 neuraminidase (NA) gene 251 >KF789679,A/North Carolina/05/2013(H3N2))6 neuraminidase (NA) gene .....................................................T.....................C....A..G....C....................G......W.A..A............T....G..............................G.......T..................A.........T..........AT........R.....C............C............................................A..A..C...........................G....................T.................C...... 26 26 , 26 26 251:>KF789679,A/North Carolina/05/2013(H3N2))6 neuraminidase (NA) gene 252 >KF790133,A/New York/03/2013(H3N2))6 neuraminidase (NA) gene .....................................................T.....................C....A..G....C....................G........A..A............T....G..............................G.......T..................A.........T..........AT..............C............C............................................A..A..C...........................G....................T.................C...... 24 24 , 24 24 252:>KF790133,A/New York/03/2013(H3N2))6 neuraminidase (NA) gene 253 >KF789765,A/Ohio/102/2012(H3N2))6 neuraminidase (NA) gene .....................................................T.....................C....A..G....C.............................A..A............T....G......A.......................G.......T..................A.........T..........AT..............C............C............................................A..A..C...........................G....................T.................C...... 24 24 , 24 24 253:>KF789765,A/Ohio/102/2012(H3N2))6 neuraminidase (NA) gene 254 >KF789721,A/Vermont/19/2012(H3N2))6 neuraminidase (NA) gene .....................................................T.....................C....A..G....C.............................A..A............T....G..............................G.......T..................A.........T..........AT..............C............C............................................A..A..C...........................G....................T.................C...... 23 23 , 23 23 254:>KF789721,A/Vermont/19/2012(H3N2))6 neuraminidase (NA) gene 255 >KF789718,A/Ohio/97/2012(H3N2))6 neuraminidase (NA) gene .....................................................T.....................C....A..G....C.............................A..A............T....G..............................G.......T..................A.........T..........AT..............C............C............................................A..A..C...........................G....................T.................C...... 23 23 , 23 23 255:>KF789718,A/Ohio/97/2012(H3N2))6 neuraminidase (NA) gene 256 >KF789951,A/Ohio/01/2013(H3N2))6 neuraminidase (NA) gene .....................................................T.....................C....A..G....C.............................A..A............T....G..............................G.......T..................A.........T..........AT..............C............C............................................A..A..C...........................G....................T.................C...... 23 23 , 23 23 256:>KF789951,A/Ohio/01/2013(H3N2))6 neuraminidase (NA) gene 257 >KF790367,A/Ohio/01/2013(H3N2))6 neuraminidase (NA) gene .....................................................T.....................C....A..G....C.............................A..A............T....G..............................G.......T..................A.........T..........AT..............C............C............................................A..A..C...........................G....................T.................C...... 23 23 , 23 23 257:>KF790367,A/Ohio/01/2013(H3N2))6 neuraminidase (NA) gene 258 >KF790469,A/Nevada/02/2013(H3N2))6 neuraminidase (NA) gene .....................................................T.....................C....A..G....C.............................A..A............T....G..............................G.......T..................A.........T..........AT..............C............C............................................A..A..C...........................G....................T.................C...... 23 23 , 23 23 258:>KF790469,A/Nevada/02/2013(H3N2))6 neuraminidase (NA) gene 259 >KF789811,A/South Dakota/12/2012(H3N2))6 neuraminidase (NA) gene .....................................................T.....................C....A..G....C.............................A..A............T....G..............................G.......T..................A.........T..........AT..............C............C............................................A..A..C...........................G....................T.................C...... 23 23 , 23 23 259:>KF789811,A/South Dakota/12/2012(H3N2))6 neuraminidase (NA) gene 260 >KF789686,A/South Dakota/10/2012(H3N2))6 neuraminidase (NA) gene .....................................................T.....................C....A..G....C.............................A..A............T....G..............................G.......T..................A.........T..........AT..............C............C............................................A..A..C...........................G....................T.................C...... 23 23 , 23 23 260:>KF789686,A/South Dakota/10/2012(H3N2))6 neuraminidase (NA) gene 261 >KF790131,A/Missouri/04/2013(H3N2))6 neuraminidase (NA) gene .....................................................T.....................C....A..G....C.............................A..A............T....G..............................G.......T..................A.........T..........AT..............C............C............................................A..A..C...........................G....................T.................C...... 23 23 , 23 23 261:>KF790131,A/Missouri/04/2013(H3N2))6 neuraminidase (NA) gene 262 >KF790393,A/Idaho/01/2013(H3N2))6 neuraminidase (NA) gene .....................................................T.....................C....A..G....C.............................A..A....G.......T....G..............................G.......T..................A.........T..........AT...G..........C............C............................................A..A..C...........................G....................T.................C...... 25 25 , 25 25 262:>KF790393,A/Idaho/01/2013(H3N2))6 neuraminidase (NA) gene 263 >KF789792,A/South Dakota/14/2012(H3N2))6 neuraminidase (NA) gene .....................................................T.....................C....A..G....C.............................A..A....R.......T....G..............................G.......T..................A.........T..........AT..............C............C............................................A..A..C...........................G....................T.................C...... 24 24 , 24 24 263:>KF789792,A/South Dakota/14/2012(H3N2))6 neuraminidase (NA) gene 264 >KF790166,A/Michigan/25/2012(H3N2))6 neuraminidase (NA) gene .....................A...............................T.....................C....A..G....C.............................A..A............T....G..............................G.......T..................A.........T..........AT..............C............C............................................A..A..C...........................G....................T.................C...... 24 24 , 24 24 264:>KF790166,A/Michigan/25/2012(H3N2))6 neuraminidase (NA) gene 265 >KF790055,A/South Dakota/15/2012(H3N2))6 neuraminidase (NA) gene .....................................................T.....................C....A..G....C.............................A..A............T....G..............................G.......T..................A.........T..........AT..............C............C............................................A..A..C...........................G....................T........................ 22 22 , 22 22 265:>KF790055,A/South Dakota/15/2012(H3N2))6 neuraminidase (NA) gene 266 >KF789820,A/Washington/62/2012(H3N2))6 neuraminidase (NA) gene .....................................................T.....................C....A..G....C.............................A..A.A..........T....G..............................G.......T..................A.........T..........AT..............C............C............................................A..A..C...........................G....................T.................C...... 24 24 , 24 24 266:>KF789820,A/Washington/62/2012(H3N2))6 neuraminidase (NA) gene 267 >KF790092,A/Iowa/13/2012(H3N2))6 neuraminidase (NA) gene .....................................................T.....................C....A..G....C.............................A..A.Y..........T....G..............................G.......T..................A.........T..........AT..............C............C............................................A..A..C...........................G....................T.................C...... 24 24 , 24 24 267:>KF790092,A/Iowa/13/2012(H3N2))6 neuraminidase (NA) gene 268 >KF789693,A/Massachusetts/11/2013(H3N2))6 neuraminidase (NA) gene ....................C......................C...............................C....A..G....C................................A.Y..........T...................................G.......T..................A....................AT..............C.........................................................A..A..C...........................G...............A....T...........T.....C.A.... 24 24 , 24 24 268:>KF789693,A/Massachusetts/11/2013(H3N2))6 neuraminidase (NA) gene 269 >KF790120,A/Oklahoma/03/2013(H3N2))6 neuraminidase (NA) gene ..............C..............................................C.............C....A..G....C..........................G.....A.Y..........T....G..............................G.......T..................A....................AT..............C.........................................................A..A..C...........................G....................T.................C...... 23 23 , 23 23 269:>KF790120,A/Oklahoma/03/2013(H3N2))6 neuraminidase (NA) gene 270 >KF789976,A/North Carolina/01/2013(H3N2))6 neuraminidase (NA) gene ..............C..............................................C.............C....A..G....C................................AT...........T....G..............................G.......T..................A....................AT..............C.........................................................A..A..C...........................G....................T.................C...... 22 22 , 22 22 270:>KF789976,A/North Carolina/01/2013(H3N2))6 neuraminidase (NA) gene 271 >KF790132,A/Virginia/06/2013(H3N2))6 neuraminidase (NA) gene ..............C..............................................C.............C....A..G....C................................A...R........T....G..............................G.......T...T..............A....................AT..............C.........................................................A..A..C...........................G....................T.................C...... 23 23 , 23 23 271:>KF790132,A/Virginia/06/2013(H3N2))6 neuraminidase (NA) gene 272 >KF790123,A/Louisiana/04/2013(H3N2))6 neuraminidase (NA) gene ..............C....................C.........................C.............C....A..G....C................................A...R........T....G..............................G.......T..................A....................AT..............C.........................................................A..A..C...........................G....................T.................C...... 23 23 , 23 23 272:>KF790123,A/Louisiana/04/2013(H3N2))6 neuraminidase (NA) gene 273 >KF790208,A/Alaska/04/2012(H3N2))6 neuraminidase (NA) gene ...................................C.......................................C....A..G....C................................A............T....G..............................G.......T..................A....................AT..............C.........................................................A..A..C...........................G....................T.................C...... 20 20 , 20 20 273:>KF790208,A/Alaska/04/2012(H3N2))6 neuraminidase (NA) gene 274 >KC892417,A/Alaska/04/2012(H3N2))6 neuraminidase (NA) gene ...................................C.......................................C....A..G....C................................A............T....G..............................G.......T..................A....................AT..............C.........................................................A..A..C...........................G....................T.................C...... 20 20 , 20 20 274:>KC892417,A/Alaska/04/2012(H3N2))6 neuraminidase (NA) gene 275 >KF790501,A/Texas/11/2013(H3N2))6 neuraminidase (NA) gene ..........................C........C.............................A.........C....A..G....C................................A............T....G..............................G.......T..................A....................AT..............C.........................................................A..A..C...........................G....................T.................C...... 22 22 , 22 22 275:>KF790501,A/Texas/11/2013(H3N2))6 neuraminidase (NA) gene 276 >KF789894,A/Wisconsin/51/2012(H3N2))6 neuraminidase (NA) gene ..........................C................................................C....A..G....C................................A............T....G..............................G.......T..................A....................AT..............C.........................................................A..A..C...........................G....................T.................C...... 20 20 , 20 20 276:>KF789894,A/Wisconsin/51/2012(H3N2))6 neuraminidase (NA) gene 277 >Index/32g12f1.c2,38-41 ...........................................................................C....A..G....C................................A............T....G...................G..........G.......T..................A....................AT..............C.........................................................A..A..C...........................G....................T.................C...... 20 20 , 20 20 277:>Index/32g12f1.c2,38-41 278 >KF789744,A/Montana/03/2013(H3N2))6 neuraminidase (NA) gene ...........................................................................C....A..G....C................................A............T....G..............................G.......T..................A....................AT..............C.........................................................A..A..C.........G.................G....................T.................C...... 20 20 , 20 20 278:>KF789744,A/Montana/03/2013(H3N2))6 neuraminidase (NA) gene 279 >KF789763,A/North Carolina/28/2012(H3N2))6 neuraminidase (NA) gene ...........................................................................C....A..G....C................................A............T....G..............................G.......T..................A....................AT..............C.........................................................A..A..C.........G.................GC...................T......A.A........C...... 23 23 , 23 23 279:>KF789763,A/North Carolina/28/2012(H3N2))6 neuraminidase (NA) gene 280 >KF790285,A/Iowa/14/2012(H3N2))6 neuraminidase (NA) gene ...........................................................................C....A..G....C................................A...A........T....G..............................G.......T..................A....................AT..............C.........................................................A..A..C...........................G....................T.................C...... 20 20 , 20 20 280:>KF790285,A/Iowa/14/2012(H3N2))6 neuraminidase (NA) gene 281 >KF789837,A/New Jersey/03/2013(H3N2))6 neuraminidase (NA) gene ...........................................................................C....A..G....C..................A.............A............T....G..............................G.......T..................A....................AT..............C.........................................................A..A..C...........................G....................T.................C...... 20 20 , 20 20 281:>KF789837,A/New Jersey/03/2013(H3N2))6 neuraminidase (NA) gene 282 >KF789599,A/Alabama/24/2012(H3N2))6 neuraminidase (NA) gene ................................A..........................................C....A..G....C................................A............T....G..............................G.......T..................A....................AT..............C.........................................................A..A..C...........................G....................T.................C...... 20 20 , 20 20 282:>KF789599,A/Alabama/24/2012(H3N2))6 neuraminidase (NA) gene 283 >KF789642,A/Kentucky/03/2013(H3N2))6 neuraminidase (NA) gene ................................A..........................................C....A..G....C................................A............T....G..............................G.......T..................A....................AT..............C.........................................................A..A..C...........................G....................T.................C...... 20 20 , 20 20 283:>KF789642,A/Kentucky/03/2013(H3N2))6 neuraminidase (NA) gene 284 >KF789588,A/Montana/13/2012(H3N2))6 neuraminidase (NA) gene ................................A..........................................C....A..G....C................................A............T....G..............................G.......T..................A....................AT..............C.........................................................A..A..C...........................G....................T.................C...... 20 20 , 20 20 284:>KF789588,A/Montana/13/2012(H3N2))6 neuraminidase (NA) gene 285 >KF790354,A/Kentucky/01/2013(H3N2))6 neuraminidase (NA) gene ................................A..........................................C....A..G....C................................A............T....G..............................G.......T..................A....................AT..............C.........................................................A..A..C...........................G....................T.................C...... 20 20 , 20 20 285:>KF790354,A/Kentucky/01/2013(H3N2))6 neuraminidase (NA) gene 286 >KF789925,A/Alabama/17/2012(H3N2))6 neuraminidase (NA) gene ................................A..........................................C....A..G....C................................A...R........T....G..............................G.......T..................A....................AT..............C.........................................................A..A..C...........................G....................T.................C...... 21 21 , 21 21 286:>KF789925,A/Alabama/17/2012(H3N2))6 neuraminidase (NA) gene 287 >KF790290,A/Alabama/18/2012(H3N2))6 neuraminidase (NA) gene ................................A..........................................C....A..G....C................................A...R........T....G..............................G.......T..................A....................AT..............C.........................................................A..A..C...........................G....................T.................C...... 21 21 , 21 21 287:>KF790290,A/Alabama/18/2012(H3N2))6 neuraminidase (NA) gene 288 >KF790481,A/West Virginia/05/2013(H3N2))6 neuraminidase (NA) gene ...........................................................................C....A..G....C...............................CA...R........T....G..............................G....C..T..................A....................AT..............C.........................................................A..A..C......................T....G....................T.................C...... 23 23 , 23 23 288:>KF790481,A/West Virginia/05/2013(H3N2))6 neuraminidase (NA) gene 289 >KF789967,A/West Virginia/10/2013(H3N2))6 neuraminidase (NA) gene ...........................................................................C....A..G....C...............................CA...R........T....G..............................G....C..T..................A....................AT..............C.........................................................A..A..C......................T....G....................T.................C...... 23 23 , 23 23 289:>KF789967,A/West Virginia/10/2013(H3N2))6 neuraminidase (NA) gene 290 >KF789861,A/West Virginia/11/2013(H3N2))6 neuraminidase (NA) gene ...........................................................................C....A..G....C...............................CA...R........T....G..............................G....C..T..................A....................AT..............C.........................................................A..A..C......................T....G....................T.................C...... 23 23 , 23 23 290:>KF789861,A/West Virginia/11/2013(H3N2))6 neuraminidase (NA) gene 291 >KF790485,A/West Virginia/06/2013(H3N2))6 neuraminidase (NA) gene ...........................................................................C....A..G....C...............................CA............T....G..............................G....C..T..................A....................AT..............C.........................................................A..A..C......................T....G....................T.................C...... 22 22 , 22 22 291:>KF790485,A/West Virginia/06/2013(H3N2))6 neuraminidase (NA) gene 292 >KF790235,A/New York/38/2012(H3N2))6 neuraminidase (NA) gene ...........................................................................C.......G....C................................A............T....G....................T.........G.......T..................A....................AT..............C.........................................................A..A..C...........................G....................T.................C...... 19 19 , 19 19 292:>KF790235,A/New York/38/2012(H3N2))6 neuraminidase (NA) gene 293 >KF790269,A/New York/38/2012(H3N2))6 neuraminidase (NA) gene ...........................................................................C.......G....C................................A.Y..........T....G....................T.........G.......T..................A....................AT..............C.........................................................A..A..C...........................G....................T.................C...... 20 20 , 20 20 293:>KF790269,A/New York/38/2012(H3N2))6 neuraminidase (NA) gene 294 >KF789943,A/California/49/2012(H3N2))6 neuraminidase (NA) gene ...........................................................................C.......G....C...............................CA.Y.R........T....G..............................G.......T..................A..........A.........AT..............C......C..................................................A..A..C...........................G....................T.................C...... 23 23 , 23 23 294:>KF789943,A/California/49/2012(H3N2))6 neuraminidase (NA) gene 295 >KF790239,A/Hawaii/30/2012(H3N2))6 neuraminidase (NA) gene ...........................................................................C.......G....C........A.......................A...R........T....G..............................G.......T..................A..........A.........AT..............C......C..................................................A..A..C...........................G....................T.................C...... 22 22 , 22 22 295:>KF790239,A/Hawaii/30/2012(H3N2))6 neuraminidase (NA) gene 296 >KF789910,A/Hawaii/45/2012(H3N2))6 neuraminidase (NA) gene ...........................................................................C.......G....C................................A...A........T....G..............................G.......T..................A..........A.........AT..............C......C..................................................A..A..C...........................G....................T.................C...... 21 21 , 21 21 296:>KF789910,A/Hawaii/45/2012(H3N2))6 neuraminidase (NA) gene 297 >KF790179,A/Hawaii/28/2012(H3N2))6 neuraminidase (NA) gene ...........................................................................C.......G....C................................A............T....G..............................G.......T..................A..........A.........AT..............C......C..................................................A..A..C...........................G....................T.................C...... 20 20 , 20 20 297:>KF790179,A/Hawaii/28/2012(H3N2))6 neuraminidase (NA) gene 298 >KF790283,A/Hawaii/29/2012(H3N2))6 neuraminidase (NA) gene ...........................................................................C.......G....C................................A....R.......T....G..Y...........................G.......T..................A..........A.........AT..............C......C..................................................A..A..C...........................G....................T.................C...... 22 22 , 22 22 298:>KF790283,A/Hawaii/29/2012(H3N2))6 neuraminidase (NA) gene 299 >KF790494,A/Pennsylvania/21/2012(H3N2))6 neuraminidase (NA) gene ...........................................................................C.......G..C.C................................A....R.......T....G..............................G.......T......T...........A....................AT..............C........Y................................................A..A..C...........................G............A.......T.................C...... 23 23 , 23 23 299:>KF790494,A/Pennsylvania/21/2012(H3N2))6 neuraminidase (NA) gene 300 >KF789994,A/Hawaii/26/2012(H3N2))6 neuraminidase (NA) gene ...........................................................................C.......G....C................................A....R.......T....G..............................G.......T..................A....................AT..............C.........................................................A..A..C...........................G....................T.................C...... 19 19 , 19 19 300:>KF789994,A/Hawaii/26/2012(H3N2))6 neuraminidase (NA) gene 301 >KF789986,A/Hawaii/25/2012(H3N2))6 neuraminidase (NA) gene ...........................................................................C.......G....C................................A............T....G.........R....................G.......T..................A....................AT..............C.........................................................A..A..C...........................G....................T.................C...... 19 19 , 19 19 301:>KF789986,A/Hawaii/25/2012(H3N2))6 neuraminidase (NA) gene 302 >KF790431,A/Massachusetts/07/2012(H3N2))6 neuraminidase (NA) gene ...........................................................................C.......G....C................................A............T....G..............................G.......T..................A....................AT..............C.........................................................A..A..C...........................G....................T.................C...... 18 18 , 18 18 302:>KF790431,A/Massachusetts/07/2012(H3N2))6 neuraminidase (NA) gene 303 >KF790252,A/New Hampshire/12/2012(H3N2))6 neuraminidase (NA) gene ...........................................................................C.......G....C................................A............T....G..............................G.......T..................A....................AT..............C.........................................................A..A..C...........................G....................T.................C...... 18 18 , 18 18 303:>KF790252,A/New Hampshire/12/2012(H3N2))6 neuraminidase (NA) gene 304 >KF789988,A/Hawaii/26/2012(H3N2))6 neuraminidase (NA) gene ...........................................................................C.......G....C................................A............T....G..............................G.......T..................A....................AT..............C.........................................................A..A..C...........................G....................T.................C...... 18 18 , 18 18 304:>KF789988,A/Hawaii/26/2012(H3N2))6 neuraminidase (NA) gene 305 >KF789873,A/New Hampshire/11/2012(H3N2))6 neuraminidase (NA) gene ...........................................................................C.......G....C................................A............T....G..............................G.......T..................A....................AT..............C.........................................................A..A..C...........................G....................T.................C...... 18 18 , 18 18 305:>KF789873,A/New Hampshire/11/2012(H3N2))6 neuraminidase (NA) gene 306 >KF789930,A/New Hampshire/11/2012(H3N2))6 neuraminidase (NA) gene ...........................................................................C.......G....C................................A...R........T....G..............................G.......T..................A....................AT..............C.........................................................A..A..C...........................G....................T.................C...... 19 19 , 19 19 306:>KF789930,A/New Hampshire/11/2012(H3N2))6 neuraminidase (NA) gene 307 >KF790002,A/Hawaii/25/2012(H3N2))6 neuraminidase (NA) gene ...........................................................................C.......G....C................................A...R........T....G..............................G.......T..................A....................AT..............C.........................................................A..A..C...........................G....................T.................C...... 19 19 , 19 19 307:>KF790002,A/Hawaii/25/2012(H3N2))6 neuraminidase (NA) gene 308 >KF790467,A/New Mexico/03/2013(H3N2))6 neuraminidase (NA) gene ...........................................................................C.......G....C................................A...R........T....G..............................G......CT..................A....................AT..............C.........................................................A..A..C...........................G.............A......T.................C...... 21 21 , 21 21 308:>KF790467,A/New Mexico/03/2013(H3N2))6 neuraminidase (NA) gene 309 >KF790249,A/Texas/82/2012(H3N2))6 neuraminidase (NA) gene ...........................................................................C....A..G....C................................A...R........T....G..............................G.......T..................A....................AT..............C.........................................................A..A..C...........................G....................T.................C...... 20 20 , 20 20 309:>KF790249,A/Texas/82/2012(H3N2))6 neuraminidase (NA) gene 310 >KF790363,A/District Of Columbia/01/2013(H3N2))6 neuraminidase (NA) gene ...........................................................................C....A..G....C................................A...R........T....G..............................G.......T..................A....................AT..............C...........C.............................................A..A..C...........................G....................T..........A......C...... 22 22 , 22 22 310:>KF790363,A/District Of Columbia/01/2013(H3N2))6 neuraminidase (NA) gene 311 >KF790122,A/Alaska/03/2013(H3N2))6 neuraminidase (NA) gene ...........................................................................C....A..G....C................................A...R........T....G...............C..............G.......T..................A...........A........AT..............C.........................................................A..A..C...........................G....................T.................C...... 22 22 , 22 22 311:>KF790122,A/Alaska/03/2013(H3N2))6 neuraminidase (NA) gene 312 >KF789568,A/Massachusetts/06/2013(H3N2))6 neuraminidase (NA) gene ...........................................................................C....A..G....C................................A...R........T....G...............C..............G.......T..................A...........A........AT..............C.........................................................A..A..C...........................G....................TG................C...... 23 23 , 23 23 312:>KF789568,A/Massachusetts/06/2013(H3N2))6 neuraminidase (NA) gene 313 >KF790025,A/Wisconsin/08/2013(H3N2))6 neuraminidase (NA) gene ...........................................................................C....A..G....C.................C..............A...R........T....G..............C...............G.......T..................A.....................T..............C.........................................................A..A..C...........................G....................TG................C...... 22 22 , 22 22 313:>KF790025,A/Wisconsin/08/2013(H3N2))6 neuraminidase (NA) gene 314 >KF790052,A/North Dakota/02/2013(H3N2))6 neuraminidase (NA) gene ...........................................................................C....A..G....C.................C..............A...R........T....G..............................G.....G.T..................A....................AT..............C.........................................................A..A..C...........................G...C................TG................C...... 24 24 , 24 24 314:>KF790052,A/North Dakota/02/2013(H3N2))6 neuraminidase (NA) gene 315 >KF789836,A/California/18/2013(H3N2))6 neuraminidase (NA) gene ...........................................................................C....A..G....C.................C..............A.Y.R........T....G..............................G.....G.T..................A....................AT..............C.........................................................A..A..C...........................G....................T.................C...... 23 23 , 23 23 315:>KF789836,A/California/18/2013(H3N2))6 neuraminidase (NA) gene 316 >KF789823,A/New York/47/2012(H3N2))6 neuraminidase (NA) gene ...........................................................................C....A..G....C.................C..............A...R........T....G..............................G.......T..................A....................AT..............C........................................R................A..A..C...........................G....................T.................C...... 22 22 , 22 22 316:>KF789823,A/New York/47/2012(H3N2))6 neuraminidase (NA) gene 317 >KF789729,A/New Mexico/06/2013(H3N2))6 neuraminidase (NA) gene ...........................................................................C....A..G....C.................C..............A...R........T..A.G..............................G.......T..................A....................AT..............C.........................................................A..A..C...........................G....................T.................C...... 22 22 , 22 22 317:>KF789729,A/New Mexico/06/2013(H3N2))6 neuraminidase (NA) gene 318 >KF789607,A/Wyoming/03/2013(H3N2))6 neuraminidase (NA) gene ...........................................................................C....A..G....C.................C..............A...R........T....G..............................G.......T..................A....................AT..A...........C.......................................................A.A..A..C...........................G....................T.................C...... 23 23 , 23 23 318:>KF789607,A/Wyoming/03/2013(H3N2))6 neuraminidase (NA) gene 319 >KF789863,A/New Jersey/05/2013(H3N2))6 neuraminidase (NA) gene ...............................................................A...........C....A..G....C.................CA.............A...R........T....G..............................G.......T..................A....................AT..............C.........................................................A..A..C...........................G....................T.................C...... 23 23 , 23 23 319:>KF789863,A/New Jersey/05/2013(H3N2))6 neuraminidase (NA) gene 320 >KF790042,A/Florida/09/2013(H3N2))6 neuraminidase (NA) gene .C.........................................................................C....A..G....C.................C..............A...R........T....G.............T................G.......T..................A....................AT....C.........C.........................................................A..A..C...........................G....................T.................C...... 24 24 , 24 24 320:>KF790042,A/Florida/09/2013(H3N2))6 neuraminidase (NA) gene 321 >KF790318,A/Massachusetts/04/2013(H3N2))6 neuraminidase (NA) gene ...........................................................................C....A..G....C..........R......C..............A...R........T...CG..............................G.......T..................A....................AT..............C........................T................................A..A..C...........................G....................T.................C...... 24 24 , 24 24 321:>KF790318,A/Massachusetts/04/2013(H3N2))6 neuraminidase (NA) gene 322 >KF790533,A/Iowa/02/2013(H3N2))6 neuraminidase (NA) gene ...........................................................................C....A..G....C.................C..............A...R........T....G..............................G.......T..................A....................AT.........AA...C.................................................G.......A..A..C...........................G....................T.................C...... 24 24 , 24 24 322:>KF790533,A/Iowa/02/2013(H3N2))6 neuraminidase (NA) gene 323 >KF790410,A/Delaware/08/2013(H3N2))6 neuraminidase (NA) gene ...........................................................................C....A..G....C.................C..............A............T....G..............................G.......T..................A....................AT..............C.........................................................A..A..C...........................G....................T.................C...... 20 20 , 20 20 323:>KF790410,A/Delaware/08/2013(H3N2))6 neuraminidase (NA) gene 324 >KF789897,A/Massachusetts/15/2012(H3N2))6 neuraminidase (NA) gene ...........................................................................C....A..G....C.................C..............A............T....G..............................G.......T..................A..G.................AT..............C.........................................................A..A..C...........................G....................T.................C...... 21 21 , 21 21 324:>KF789897,A/Massachusetts/15/2012(H3N2))6 neuraminidase (NA) gene 325 >KF790317,A/New Jersey/02/2013(H3N2))6 neuraminidase (NA) gene ...........................................................................C....A..G....C.................C..............A............T....G...............C..............G.......T..................A....................AT..............C.........................................................A..A..C...........................G....................T.................C...... 21 21 , 21 21 325:>KF790317,A/New Jersey/02/2013(H3N2))6 neuraminidase (NA) gene 326 >KF789747,A/Texas/09/2013(H3N2))6 neuraminidase (NA) gene .................................................G.........................C....A..G....C.................C..............A............T....G..........................A...G.......T..................A....................AT..............C.........................................................A..A..C...........................G....................T.................C...... 22 22 , 22 22 326:>KF789747,A/Texas/09/2013(H3N2))6 neuraminidase (NA) gene 327 >KF790021,A/Florida/08/2013(H3N2))6 neuraminidase (NA) gene ...........................................................................C....A..G....C.................C..............A............T....G..............................G.......T..................A................C...AT..............C...................................R.....................A..A..C...........................G....................T.................C...... 22 22 , 22 22 327:>KF790021,A/Florida/08/2013(H3N2))6 neuraminidase (NA) gene 328 >KF790422,A/Massachusetts/05/2013(H3N2))6 neuraminidase (NA) gene ...........................................................................C....A..G....C.................C..............A............T....G..............................G.......T..................A....................AT..............C.........................................................A..A..C...........................G....................T.................C...... 20 20 , 20 20 328:>KF790422,A/Massachusetts/05/2013(H3N2))6 neuraminidase (NA) gene 329 >KF790024,A/New York/05/2013(H3N2))6 neuraminidase (NA) gene ..........................................C................................C....A..G....C.................C..............A............T....G..............................G.......T..................A....................AT..............C.........................................................A..A..C...........................G....................T.................C...... 21 21 , 21 21 329:>KF790024,A/New York/05/2013(H3N2))6 neuraminidase (NA) gene 330 >KF790372,A/New York/06/2013(H3N2))6 neuraminidase (NA) gene ...........................................................................C....A..G....C.................C..............A............T....G..............................G.......T..................A.....................T..............C.........................................................A..A..C...........................G....................T.................C...... 19 19 , 19 19 330:>KF790372,A/New York/06/2013(H3N2))6 neuraminidase (NA) gene 331 >KF789536,A/Florida/06/2013(H3N2))6 neuraminidase (NA) gene ...........................................................................C....A..G....C.................C..............A............T....G..............................G.......T..................A....................AT..............C.........................................................A..A..C..........T................G....................T.................C...... 21 21 , 21 21 331:>KF789536,A/Florida/06/2013(H3N2))6 neuraminidase (NA) gene 332 >KC892571,A/Pennsylvania/09/2012(H3N2))6 neuraminidase (NA) gene ..............................................................T..........G.CA...A..G....C................................A............T....G..................A...........G.......T..................A....................AT..............C.........................................................A..A..C..........T................G....................T...C.............C...... 25 25 , 25 25 332:>KC892571,A/Pennsylvania/09/2012(H3N2))6 neuraminidase (NA) gene 333 >KF789694,A/Pennsylvania/09/2012(H3N2))6 neuraminidase (NA) gene ..............................................................T..........G.CA...A..G....C................................A............T....G..................A...........G.......T..................A....................AT..............C.........................................................A..A..C..........T................G....................T...C.............C...... 25 25 , 25 25 333:>KF789694,A/Pennsylvania/09/2012(H3N2))6 neuraminidase (NA) gene 334 >KF790314,A/Delaware/07/2013(H3N2))6 neuraminidase (NA) gene ...............................................GG..........................C....A..G....C......................T.........A............T....G..............................G.......T............G.....A....................AT..............C.........................................................A..A..C...........................G....................T.................C...... 23 23 , 23 23 334:>KF790314,A/Delaware/07/2013(H3N2))6 neuraminidase (NA) gene 335 >KF789931,A/Maryland/29/2012(H3N2))6 neuraminidase (NA) gene ..........................................................................TC....A.......C................................A....R.......T....G..............................G.......T..................A.............T......AT..............C.........................................................A..A..C...........................G....................T...............TAC...... 23 23 , 23 23 335:>KF789931,A/Maryland/29/2012(H3N2))6 neuraminidase (NA) gene 336 >KF789971,A/Florida/21/2013(H3N2))6 neuraminidase (NA) gene ...........................................................................C....A..G...........T.....................T...A....R....T..TT..................................G.......T..................A.....TC..............T...........................C.G..............G...........................A..A..C...........................G..............T.....T.................C...... 26 26 , 26 26 336:>KF789971,A/Florida/21/2013(H3N2))6 neuraminidase (NA) gene 337 >KF790142,A/Texas/14/2013(H3N2))6 neuraminidase (NA) gene ............................G..............................................C....A..G.................................T...A....R....T..TT..................................G.......T..................A.....T...............T...........................C.G....................A.....................A..A..C...........................G..............T.....T.................C...... 25 25 , 25 25 337:>KF790142,A/Texas/14/2013(H3N2))6 neuraminidase (NA) gene 338 >KF789973,A/Massachusetts/12/2013(H3N2))6 neuraminidase (NA) gene ...........................................................................C....A..G.................................T...A....R....T..TT.................T................G.......T..................A.....T...............T........G..................C.G..........................................A..A..C...........................G..............T.....T.................C...... 25 25 , 25 25 338:>KF789973,A/Massachusetts/12/2013(H3N2))6 neuraminidase (NA) gene 339 >KF790380,A/Missouri/05/2013(H3N2))6 neuraminidase (NA) gene ...........................................................................C....A..G.................................T...A...R.....T..TT..................................G.......T..................A..G..T...............T...........................C.G..........................................A..A..C...........................G..............T..C..T.................C...... 25 25 , 25 25 339:>KF790380,A/Missouri/05/2013(H3N2))6 neuraminidase (NA) gene 340 >KF790299,A/Massachusetts/13/2013(H3N2))6 neuraminidase (NA) gene ...........................................................................C....A..G.................................T...A...R.....T..TT..................................G.......T..................A.....T...............T...........................C.G..........................................A..A..C...........................G..............T.....T.................C...... 23 23 , 23 23 340:>KF790299,A/Massachusetts/13/2013(H3N2))6 neuraminidase (NA) gene 341 >Index/H3N2-2011-normalEI/2011(H3N2) ........................................G.......................................A........................................A.......................................A........G.......T..................A.....................T........................A...............................................A..A..C...G.....................A......................T.................C...... 16 16 , 16 16 341:>Index/H3N2-2011-normalEI/2011(H3N2) 342 >Index/2009/Egypt-Iowa+NA,2009// .........................................................................................................................A................................................G................................................T...........................................................................A..C................................................T.................C...... 7 7 , 7 7 342:>Index/2009/Egypt-Iowa+NA,2009// 343 >KF765544,A/Finland/584/2009(H3N2))6 neuraminidase (NA) gene ...............................................................................G.........................................A................................................G...............C................................T..........................................................................................A................................A...T.................C...... 9 9 , 9 9 343:>KF765544,A/Finland/584/2009(H3N2))6 neuraminidase (NA) gene 344 >KF765550,A/Finland/97/2009(H3N2))6 neuraminidase (NA) gene .........................................................................................................................A................................................G...............C................................T..........................................................................................A....................................T.................C...... 7 7 , 7 7 344:>KF765550,A/Finland/97/2009(H3N2))6 neuraminidase (NA) gene 345 >KF765539,A/Finland/636/2009(H3N2))6 neuraminidase (NA) gene .............A.........................................................................G...............................A.A................................................G................................................T.............A.....G.................................................................................................................................... 8 8 , 8 8 345:>KF765539,A/Finland/636/2009(H3N2))6 neuraminidase (NA) gene 346 >KF765546,A/Finland/98/2009(H3N2))6 neuraminidase (NA) gene .......................................................................................G...............................A.A................................................G................................................T.............A.....G.................................................................................................................................... 7 7 , 7 7 346:>KF765546,A/Finland/98/2009(H3N2))6 neuraminidase (NA) gene ---Index------------------------------------------------------------------------TTAAGTTCTAATGCTGTTACTGATCTTCATAGCACTCACGAAATAAGAAATGACGCCCCCAAAGAGAATCCCAACTGAAAGGAACAAATTGTGGTCGGCGGAACTCTGAAGCTCGAACGGTGCCTGATGCTAGACCAGTATTTCGGCGAGATTCTTGGGTATCTCGGGTAATAAGAATCCGCGGACTTCAATTAAAGGTAAAAATTACGGACGTTGACGCCTCATTGCAGCAACAGCCGAGTATTGTTCATGGAAAAAAGCCCAAGCTTTGATCTGAGTGTTAGACTAGGGAGTCGCGAGACAGACCGACCTAGCTATGGACGCGTAAGTTACTTAGAGCGCGGTGAAAAGTAACGGGCCTTTGGATCCCAT -codon-position----------------------------------------------------------------- 11 2 122 2 2 1 1 1 2 1 121 1 1 1 121 1 1 2 21 2 1 2 1 1 1 1 2 121 1 2 1 1 1 2 1 122 1 1 1 2212 12 1 1 1 1 1 1 2 121 1 12 1 1 1 2 11 1 122 1 1 2 1 2 1 1 12 12 1 1 2212 2 1121 112 1 1 2 1 2 2 2 2 12 2 2 1122 1 2 11 1 1 2 1 1 1 2 1 11 1 1212 000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111 000000000000000000000000001111111111111111111111111122222222222222222222222222222222222233333333333333333333333344444444444444444444444444444555555555555555555566666666666666666666666666666777777777777777777777777788888888888888888888899999999999999999999999999990000000000000000000000000000000011111111111111111111111111111122222222222222222222222222333333333333333334444 011223345555667777888889990111122223345566677777788900000111112222233333344445566777788800011222333445677777888900012222334445555566667778889000011112444557888900111223334456666666777889999000111223344445556678888900122344445556667889900002233333334444566888999990000011112222233334445567788999900000111122344555666677888899900001223333444466777778999000013344556889990000 626578951789261278245783563178916790574658902457805202467036791235912457901245647038935803625147169686925689034926870679891361236934891246798145703692369259589139235790363780134569258140369058124032814572360370367229858706790271480781803671404567892359109136123560346812560367905781470921806257801467036918712578014845125827934798150369057803256891016245810547379360582356
segment 7:
Code:000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000 000000000001111111111111111112222222222222222333333333333333344444444444444444444555555555555555566666666666666667777777777777777777888888888888888888888899999999999 334444568990012455666778888890144455666779999000112233555899900112234556777888899012224444556789900000112233457781223455666667788899022334444445556677888911234555677 690358197392812409378570356957606958147361357369254803124108928140681698147037926141580136254321403469281502222851035468023675801203839890346780593714256829530026749 -codon-position--------------------------------------------- 11 2 12 1 2 21 1 1 2 1 1 12 1 1 1 2 1 1 21 11211 121111112 1 121 12 11 11 11 1212121 ---Index----------------------------------------------------CTAGTAAGACTGCACAAACCTATGGTTGGCACTCTGTATTCTACGGATGGGCTGCATCCATGGTATGGAGGCCGCGTAGAGATGTGTTGCTATAAGGGGGCGGTTGGAGGTTCGTGGGGGCCGTGCGATAGCGTTCGTATGACCACCAACCAAGAAAAGGCCCTG 1 >Index/USA-2007 ..................................................................................................................................................................... 0 0 , 0 0 1:>Index/USA-2007 2 >Index/Perth-like/2009 ......................................C........................................G...A...........A................T.................................................... 5 5 , 5 5 2:>Index/Perth-like/2009 3 >Index/Brisbane-like/2007 ..................................................................................................................................................................... 0 0 , 0 0 3:>Index/Brisbane-like/2007 4 >2007/02/06,14278,AUS,A/Brisbane/10/07 ........................................................C.............................C.............................................................................. 2 2 , 2 2 4:>2007/02/06,14278,AUS,A/Brisbane/10/07 5 >Index/2009/Egypt/Iowa ......................................C........................................G...A................................................................................. 3 3 , 3 3 5:>Index/2009/Egypt/Iowa 6 >Index/H3N2-2011-normalEI/2011(H3N2) ......................................C..........................C.............G...A.......T..G..............................................................G....... 7 7 , 7 7 6:>Index/H3N2-2011-normalEI/2011(H3N2) 7 >Index/2009/Egypt-Iowa+NA,2009// ......................................C........................................G...A................................................................................. 3 3 , 3 3 7:>Index/2009/Egypt-Iowa+NA,2009// 8 >Index/32g12f1.c2,42-53 ......................................C..C.........................A...........G...A.........................A..........................A............................ 7 7 , 7 7 8:>Index/32g12f1.c2,42-53 9 >KF790507,A/Texas/83/2012(H3N2) ......................................C..C.........................A...........G...A.........................A..........................A............................ 7 7 , 7 7 9:>KF790507,A/Texas/83/2012(H3N2) 10 >KF790172,A/Louisiana/09/2012(H3N2) ......................................C..C.........................A...........G...A................................................................................. 5 5 , 5 5 10:>KF790172,A/Louisiana/09/2012(H3N2) 11 >KF790254,A/Maine/08/2012(H3N2) ................................CT....C..C.........................A...........G...A.............A...................................C.........................A..... 10 10 , 10 10 11:>KF790254,A/Maine/08/2012(H3N2) 12 >Index/32g12f1.c2,38-41 ......................................C..C.........................A...........G...A..................A....................A......................................... 7 7 , 7 7 12:>Index/32g12f1.c2,38-41 13 >KF790174,A/Maryland/32/2012(H3N2) ......................................C..C.........................A...........G...A.....T........................................................................... 6 6 , 6 6 13:>KF790174,A/Maryland/32/2012(H3N2) 14 >KF789708,A/Kentucky/18/2012(H3N2) .......A.....................A........C.T........A.............................G..CA.....A..............................T..........T................................. 11 11 , 11 11 14:>KF789708,A/Kentucky/18/2012(H3N2) 15 >KF789710,A/Kentucky/17/2012(H3N2) .......A.....................A........C.T........A.............................G...A.....A..............................T..........T................................. 10 10 , 10 10 15:>KF789710,A/Kentucky/17/2012(H3N2) 16 >KF790486,A/South Carolina/22/2012(H3N2) .......A.....................A........C.T........A.............................G...A.....A..............................T..........T................................. 10 10 , 10 10 16:>KF790486,A/South Carolina/22/2012(H3N2) 17 >KF789907,A/Kentucky/24/2012(H3N2) .......A.....................A........C.T........A.............................G...A.....A..............................T..........T................................. 10 10 , 10 10 17:>KF789907,A/Kentucky/24/2012(H3N2) 18 >KF789939,A/South Carolina/24/2012(H3N2) .......A.....................A........C.T........A.............................G...A.....A..............................T..........T................................. 10 10 , 10 10 18:>KF789939,A/South Carolina/24/2012(H3N2) 19 >KF790428,A/Tennessee/10/2012(H3N2) .......A.....................A........C.T........A.............................G...A.....A..............................T..........T................................. 10 10 , 10 10 19:>KF790428,A/Tennessee/10/2012(H3N2) 20 >KF789932,A/South Carolina/24/2012(H3N2) .......A.....................A........C.T........A.............................G...A.....A..............................T..........T................................. 10 10 , 10 10 20:>KF789932,A/South Carolina/24/2012(H3N2) 21 >KF789802,A/Virginia/16/2012(H3N2) .......A.....................A........C.T........A.............................G...A.....A..........................A...T..........T................................. 11 11 , 11 11 21:>KF789802,A/Virginia/16/2012(H3N2) 22 >KF789675,A/Virginia/15/2012(H3N2) .......A.....................A........C.T........A.............................G...A.....A..........................A...T..........T................................. 11 11 , 11 11 22:>KF789675,A/Virginia/15/2012(H3N2) 23 >KF789803,A/Virginia/16/2012(H3N2) .......A.....................A........C.T........A.............................G...A.....A..........................A...T..........T................................. 11 11 , 11 11 23:>KF789803,A/Virginia/16/2012(H3N2) 24 >KF789757,A/Michigan/33/2012(H3N2) .......A.....................A........C.T........A.............................G...A.....A..........................A...T..........T................................. 11 11 , 11 11 24:>KF789757,A/Michigan/33/2012(H3N2) 25 >KF789713,A/Tennessee/18/2012(H3N2) .......A.....................A........C.T........A.............................G...A.....A..........................A...T..........T................................. 11 11 , 11 11 25:>KF789713,A/Tennessee/18/2012(H3N2) 26 >KF789940,A/Florida/68/2012(H3N2) .............................A........C.T........A.............................G...A.....A..............................T............................................ 8 8 , 8 8 26:>KF789940,A/Florida/68/2012(H3N2) 27 >KF790424,A/Alaska/02/2013(H3N2) .............................A........C.T........A.....................T.......G...A.....A.............................................TA........T................... 11 11 , 11 11 27:>KF790424,A/Alaska/02/2013(H3N2) 28 >KF789808,A/Georgia/22/2012(H3N2) .............................A........C.T........A.....................T.......G...A.....A.............................................TA........T................... 11 11 , 11 11 28:>KF789808,A/Georgia/22/2012(H3N2) 29 >KF789903,A/Alaska/02/2013(H3N2) .............................A........C.T........A.....................T.......G...A.....A.............................................TA........T................... 11 11 , 11 11 29:>KF789903,A/Alaska/02/2013(H3N2) 30 >KF789937,A/Florida/01/2013(H3N2) .............................A........C.T........A.....................T.......G...A.....A.............................................TA........T................... 11 11 , 11 11 30:>KF789937,A/Florida/01/2013(H3N2) 31 >KF789553,A/California/55/2012(H3N2) .............................A........C.T........A.....................T.......G...A.....A.............................................TA........T................... 11 11 , 11 11 31:>KF789553,A/California/55/2012(H3N2) 32 >KF790246,A/South Carolina/16/2012(H3N2) .............................A........C.T........A.....................T.......G...A.....A......................................C......TA........T................... 12 12 , 12 12 32:>KF790246,A/South Carolina/16/2012(H3N2) 33 >KF790078,A/Delaware/23/2012(H3N2) .........A...................A........C.T........A.....................T.......G...A.....A..............................................A........T................... 11 11 , 11 11 33:>KF790078,A/Delaware/23/2012(H3N2) 34 >KF790072,A/Delaware/23/2012(H3N2) .........A...................A........C.T........A.....................T.......G...A.....A..............................................A........T................... 11 11 , 11 11 34:>KF790072,A/Delaware/23/2012(H3N2) 35 >KF790274,A/Mississippi/13/2012(H3N2) .............................A........C.T........A.....................T.......G...A.....A..............................................A........T................... 10 10 , 10 10 35:>KF790274,A/Mississippi/13/2012(H3N2) 36 >KF790191,A/Vermont/16/2012(H3N2) .............................A........C.T........A.....................T.......G...A.....A..............................................A........T................... 10 10 , 10 10 36:>KF790191,A/Vermont/16/2012(H3N2) 37 >KF790241,A/New York/40/2012(H3N2) .............................A........C.T........A.....................T.......G...A.....A.......A.................A....................A........T................... 12 12 , 12 12 37:>KF790241,A/New York/40/2012(H3N2) 38 >KF790233,A/Nevada/26/2012(H3N2) .............................A........C.T........A.....................T.......G...A.....A.......A......................................A........T................... 11 11 , 11 11 38:>KF790233,A/Nevada/26/2012(H3N2) 39 >KF789860,A/Maryland/43/2012(H3N2) .............................A........C.T........A.....................T.......G...A.....A.......A......................................A........T................... 11 11 , 11 11 39:>KF789860,A/Maryland/43/2012(H3N2) 40 >KF789749,A/Louisiana/16/2012(H3N2) .............................A........C.T........A.....................T.......G...A.....A.......A......................................A........T................... 11 11 , 11 11 40:>KF789749,A/Louisiana/16/2012(H3N2) 41 >KF789919,A/Alabama/35/2012(H3N2) .............................A........C.T........A.....................T.......G...A.....A.......A......................................A........T................... 11 11 , 11 11 41:>KF789919,A/Alabama/35/2012(H3N2) 42 >KF790000,A/Florida/39/2012(H3N2) .............................A........C.T........A.....................T.......G...A.....A.......A...A..................................A........T................... 12 12 , 12 12 42:>KF790000,A/Florida/39/2012(H3N2) 43 >KF789833,A/Virginia/14/2012(H3N2) .............................A........C.T........A.....................T.......GA..A.....A.......A......................................A........T................... 12 12 , 12 12 43:>KF789833,A/Virginia/14/2012(H3N2) 44 >KF790096,A/Wisconsin/37/2012(H3N2) ......................C......A........C.T........A.....................T.......G...A.....A..............................................A........T................... 11 11 , 11 11 44:>KF790096,A/Wisconsin/37/2012(H3N2) 45 >KF790110,A/Mississippi/12/2012(H3N2) ......................C......A........C.T........A.....................T.......G...A.....A.........S....................................A........T...............A... 13 13 , 13 13 45:>KF790110,A/Mississippi/12/2012(H3N2) 46 >KF790396,A/Nebraska/04/2013(H3N2) ......................C......A....C...C.T........A.....................T.......G...A.....A...............A..............................A........T................... 13 13 , 13 13 46:>KF790396,A/Nebraska/04/2013(H3N2) 47 >Index/32g12f1.c2,55-62 .............................A....C...C.T........AA....................T.......G...A.....A..............................................A........T................... 12 12 , 12 12 47:>Index/32g12f1.c2,55-62 48 >KF789573,A/Colorado/20/2012(H3N2) .............................A........C.T........AA....................T.......G...A.....A..............................................A........T....T.............. 12 12 , 12 12 48:>KF789573,A/Colorado/20/2012(H3N2) 49 >KF789692,A/Georgia/15/2012(H3N2) .............................A........C.T........A.....................T.....C.G...A.....A..............................................A........T................... 11 11 , 11 11 49:>KF789692,A/Georgia/15/2012(H3N2) 50 >KF789922,A/Georgia/16/2012(H3N2) .............................A........C.T........A.....................T.....C.G...A.....A..............................................A........T........G.......... 12 12 , 12 12 50:>KF789922,A/Georgia/16/2012(H3N2) 51 >Index/H3N3-2011-reassortedEI/2011(H3N2) .............................A........C.T........A.............................G...A.....A........................................................................... 7 7 , 7 7 51:>Index/H3N3-2011-reassortedEI/2011(H3N2) 52 >KF790164,A/Oklahoma/04/2012(H3N2) .........T......T..T.....G...A........C.T........A.....G.......................G...A.....A...................T.............................C....................A.T.. 16 16 , 16 16 52:>KF790164,A/Oklahoma/04/2012(H3N2) 53 >KF790492,A/Louisiana/11/2012(H3N2) ..........G..................A........C.T........A....................A.T......G...A.....A................A...................T.......C.............G................ 14 14 , 14 14 53:>KF790492,A/Louisiana/11/2012(H3N2) 54 >KF790474,A/California/22/2013(H3N2) ..................T....A...T..........C.............C...............G..T....C..G...A.............A........A................................................G......... 13 13 , 13 13 54:>KF790474,A/California/22/2013(H3N2) 55 >KF789755,A/Michigan/32/2012(H3N2) ..................T....A...T..........C.............C...............G..T.......G...A......................................................G.......................... 10 10 , 10 10 55:>KF789755,A/Michigan/32/2012(H3N2) 56 >KF789864,A/Minnesota/05/2013(H3N2) ..................T....A...T..........C.............C...............G..T.......G...A.............................A................................................... 10 10 , 10 10 56:>KF789864,A/Minnesota/05/2013(H3N2) 57 >KF790046,A/Georgia/03/2013(H3N2) ....C.............T....A...T..........C.............C...............G..T.......G...A..............A.................................................................. 11 11 , 11 11 57:>KF790046,A/Georgia/03/2013(H3N2) 58 >KF790140,A/Georgia/03/2013(H3N2) ....C.............T....A...T..........C.............C...............G..T.......G...A..............A.................................................................. 11 11 , 11 11 58:>KF790140,A/Georgia/03/2013(H3N2) 59 >KF789882,A/Maine/11/2012(H3N2) ..................T....A...T..........C.............C...............G..T.......G...A....................C........................................T................... 11 11 , 11 11 59:>KF789882,A/Maine/11/2012(H3N2) 60 >KF789793,A/Illinois/15/2012(H3N2) ..................T....A...T..........C.............C...............G..T.......G...A..........................................................T...................... 10 10 , 10 10 60:>KF789793,A/Illinois/15/2012(H3N2) 61 >KF789723,A/Minnesota/03/2013(H3N2) ..................T....A...T..........C.............C...............G..T.......G...A..........................................................T...................... 10 10 , 10 10 61:>KF789723,A/Minnesota/03/2013(H3N2) 62 >KF790508,A/Ohio/92/2012(H3N2) ..................T....A...T..........C.............C...............G..T.......G...A................................................................................. 9 9 , 9 9 62:>KF790508,A/Ohio/92/2012(H3N2) 63 >KF790035,A/Nevada/05/2013(H3N2) ..................T....A...T..........C.............C...............G..T.......G...A................................................................................. 9 9 , 9 9 63:>KF790035,A/Nevada/05/2013(H3N2) 64 >KF790349,A/Mississippi/02/2013(H3N2) ..................T....A...T..........C.............C...............G..T.......G...A................................................................................. 9 9 , 9 9 64:>KF790349,A/Mississippi/02/2013(H3N2) 65 >KF790475,A/Louisiana/01/2013(H3N2) ..................T....A...T..........C.............C...............G..T.......G...A................................................................................. 9 9 , 9 9 65:>KF790475,A/Louisiana/01/2013(H3N2) 66 >KF790401,A/Alaska/04/2013(H3N2) ..................T....A...T..........C.............C...............G..T.......G...A................................................................................. 9 9 , 9 9 66:>KF790401,A/Alaska/04/2013(H3N2) 67 >KF789639,A/Vermont/02/2013(H3N2) ..................T....A...T..........C.............C...............G..T.......G...A................................................................................. 9 9 , 9 9 67:>KF789639,A/Vermont/02/2013(H3N2) 68 >KF790520,A/California/12/2013(H3N2) ..................T....A...T..........C.............C...............G..T.......G...A................................................................................. 9 9 , 9 9 68:>KF790520,A/California/12/2013(H3N2) 69 >KF789727,A/Colorado/21/2012(H3N2) ..................T....A...T..........C.............C...............G..T.......G...A................................................................................. 9 9 , 9 9 69:>KF789727,A/Colorado/21/2012(H3N2) 70 >KF790188,A/Wisconsin/38/2012(H3N2) ..................T....A...T..........C.............C...............G..T.......G...A................................................................................. 9 9 , 9 9 70:>KF790188,A/Wisconsin/38/2012(H3N2) 71 >KF789641,A/Louisiana/02/2013(H3N2) ..................T....A...T..........C.............C...............G..T.......G...A................................................................................. 9 9 , 9 9 71:>KF789641,A/Louisiana/02/2013(H3N2) 72 >KF790510,A/Kansas/11/2012(H3N2) ..................T....A...T..........C.............C...............G..T.......G...A................................................................................. 9 9 , 9 9 72:>KF790510,A/Kansas/11/2012(H3N2) 73 >KF790029,A/New Mexico/09/2013(H3N2) ..................T....A...T..........C.............C...............G..T.......G...A................................................................................. 9 9 , 9 9 73:>KF790029,A/New Mexico/09/2013(H3N2) 74 >KF789960,A/Illinois/01/2013(H3N2) ..................T....A...T..........C.............C...............G..T.......G...A................................................................................. 9 9 , 9 9 74:>KF789960,A/Illinois/01/2013(H3N2) 75 >KF790470,A/New Mexico/04/2013(H3N2) ..................T....A...T..........C.............C..................T.......G...A................................................................................. 8 8 , 8 8 75:>KF790470,A/New Mexico/04/2013(H3N2) 76 >KF789658,A/Oregon/01/2013(H3N2) ..................T....A...T..........C.............C..................T.......G...A................................................................................. 8 8 , 8 8 76:>KF789658,A/Oregon/01/2013(H3N2) 77 >KF790040,A/Kansas/01/2013(H3N2) ..................T....A...T..........C.............C..................T.......G...A................................................................................. 8 8 , 8 8 77:>KF790040,A/Kansas/01/2013(H3N2) 78 >KF790303,A/Pennsylvania/02/2013(H3N2) ..................T....A...T..........C.............C..................T.......G...A................................................................................. 8 8 , 8 8 78:>KF790303,A/Pennsylvania/02/2013(H3N2) 79 >KF790030,A/Michigan/03/2013(H3N2) ..................T....A...T..........C.............C..................T.......G...A................................................................................. 8 8 , 8 8 79:>KF790030,A/Michigan/03/2013(H3N2) 80 >KF790342,A/Mississippi/01/2013(H3N2) ..................T....A...T..........C.............C..................T.......G...A................................................................................. 8 8 , 8 8 80:>KF790342,A/Mississippi/01/2013(H3N2) 81 >KF789654,A/Oregon/01/2013(H3N2) ..................T....A...T..........C.............C..................T.......G...A................................................................................. 8 8 , 8 8 81:>KF789654,A/Oregon/01/2013(H3N2) 82 >KF789737,A/Tennessee/02/2013(H3N2) ..................T....A...T..........C.............C..................T.......G...A.........................................A....................................... 9 9 , 9 9 82:>KF789737,A/Tennessee/02/2013(H3N2) 83 >KF789537,A/California/14/2013(H3N2) ..................T....A...T.........TC.............C..................T.......G...A................................................................................. 9 9 , 9 9 83:>KF789537,A/California/14/2013(H3N2) 84 >KF789687,A/Missouri/13/2012(H3N2) ..................T....A...T..........C.............C..................T.......G...A............A..............................G..................................... 10 10 , 10 10 84:>KF789687,A/Missouri/13/2012(H3N2) 85 >KF790397,A/Wisconsin/05/2013(H3N2) ..................T....A...T..........C.............C..................T.......G...A............A.................................................................... 9 9 , 9 9 85:>KF790397,A/Wisconsin/05/2013(H3N2) 86 >KF790447,A/Wisconsin/41/2012(H3N2) ..................T....A...T..........C.............C..................T.......G...A............A.................................................................... 9 9 , 9 9 86:>KF790447,A/Wisconsin/41/2012(H3N2) 87 >KF790294,A/North Dakota/05/2012(H3N2) ..................T....A...T..........C.............C..................T.......G...A........................T........................................................ 9 9 , 9 9 87:>KF790294,A/North Dakota/05/2012(H3N2) 88 >KF789634,A/Kansas/02/2013(H3N2) ..................T....A...T..........C...G.........C...............G..T.......G...A................................................................................. 10 10 , 10 10 88:>KF789634,A/Kansas/02/2013(H3N2) 89 >KF789666,A/Kansas/04/2013(H3N2) ..................T....A...T..........C.............C...............G..T.......G...A.............................................G................................... 10 10 , 10 10 89:>KF789666,A/Kansas/04/2013(H3N2) 90 >KF790305,A/District Of Columbia/01/2012(H3N2) ..................T....A..CT..........C.............C...............G..T...A...G...A................................................................................. 11 11 , 11 11 90:>KF790305,A/District Of Columbia/01/2012(H3N2) 91 >KF790083,A/Colorado/01/2013(H3N2) ..................T....A..CT..........C.............C...............G..T...A...G...A................................................................................. 11 11 , 11 11 91:>KF790083,A/Colorado/01/2013(H3N2) 92 >KF790466,A/California/10/2013(H3N2) ..................T....A..CT..........C.............C...............G..T...A...G...A................................................................................. 11 11 , 11 11 92:>KF790466,A/California/10/2013(H3N2) 93 >KF789783,A/Nevada/28/2012(H3N2) ..................T....A..CT..........C.............C...............G..T.......G...A................................................................................. 10 10 , 10 10 93:>KF789783,A/Nevada/28/2012(H3N2) 94 >KF789612,A/Connecticut/01/2013(H3N2) ..................T....A...T...T......C.............C...............G..T.......G...A........................................................A........................ 11 11 , 11 11 94:>KF789612,A/Connecticut/01/2013(H3N2) 95 >KF789745,A/North Carolina/05/2013(H3N2) ......C................A...T...T......C.............C...............G..T.......G...A..............................C..................................T............... 12 12 , 12 12 95:>KF789745,A/North Carolina/05/2013(H3N2) 96 >KF790134,A/New York/03/2013(H3N2) .......................A...T...T......C.............C...............G..T.......G...A..............................C................................................C. 11 11 , 11 11 96:>KF790134,A/New York/03/2013(H3N2) 97 >KF790522,A/California/11/2013(H3N2) .......................A...T...T......C.............C...............G..T.......G...A..............................C........................C......................... 11 11 , 11 11 97:>KF790522,A/California/11/2013(H3N2) 98 >KF789756,A/Ohio/102/2012(H3N2) .......................A...TA..T......C.............C...............G..T.......G...A..............................C.................................................. 11 11 , 11 11 98:>KF789756,A/Ohio/102/2012(H3N2) 99 >KF790296,A/South Dakota/16/2012(H3N2) .......................A...T...T......C.............C...............G..T.......G...A..............................C.................................................. 10 10 , 10 10 99:>KF790296,A/South Dakota/16/2012(H3N2) 100 >KF790526,A/Idaho/02/2013(H3N2) .......................A...T...T......C.............C...............G..T.......G...A..............................C.................................................. 10 10 , 10 10 100:>KF790526,A/Idaho/02/2013(H3N2) 101 >KF789832,A/Nebraska/11/2012(H3N2) .......................A...T...T......C.............C...............G..T.......G...A..............................C.................................................. 10 10 , 10 10 101:>KF789832,A/Nebraska/11/2012(H3N2) 102 >KF789790,A/South Dakota/14/2012(H3N2) .......................A...T...T......C.............C...............G..T.......G...A..............................C.................................................. 10 10 , 10 10 102:>KF789790,A/South Dakota/14/2012(H3N2) 103 >KF789715,A/Ohio/97/2012(H3N2) .......................A...T...T......C.............C...............G..T.......G...A..............................C.................................................. 10 10 , 10 10 103:>KF789715,A/Ohio/97/2012(H3N2) 104 >KF790525,A/Idaho/01/2013(H3N2) .......................A...T...T......C.............C...............G..T.......G...A..............................C.................................................. 10 10 , 10 10 104:>KF790525,A/Idaho/01/2013(H3N2) 105 >KF789681,A/South Dakota/10/2012(H3N2) .......................A...T...T......C.............C...............G..T.......G...A..............................C.................................................. 10 10 , 10 10 105:>KF789681,A/South Dakota/10/2012(H3N2) 106 >KF789788,A/South Dakota/12/2012(H3N2) .......................A...T...T......C.............C...............G..T.......G...A..............................C.................................................. 10 10 , 10 10 106:>KF789788,A/South Dakota/12/2012(H3N2) 107 >KF789830,A/Washington/62/2012(H3N2) .......................A...T...T......C.............C...............G..T.......G...A..............................C.................................................. 10 10 , 10 10 107:>KF789830,A/Washington/62/2012(H3N2) 108 >KF790126,A/Missouri/04/2013(H3N2) .......................A...T...T......C.............C...............G..T.......G...A..............................C.................................................. 10 10 , 10 10 108:>KF790126,A/Missouri/04/2013(H3N2) 109 >KF790210,A/South Dakota/15/2012(H3N2) .......................A...T...T......C.............C...............G..T.......G...A..............................C.................................................. 10 10 , 10 10 109:>KF790210,A/South Dakota/15/2012(H3N2) 110 >KF790300,A/New Mexico/23/2012(H3N2) .......................A...T...T......C.............C...............G..T.......G...A..............................C.................................................. 10 10 , 10 10 110:>KF790300,A/New Mexico/23/2012(H3N2) 111 >KF790099,A/Iowa/13/2012(H3N2) .......................A...T...T......C.............C...............G..T.......G...A..............................C.................................................. 10 10 , 10 10 111:>KF790099,A/Iowa/13/2012(H3N2) 112 >KF789938,A/California/46/2012(H3N2) .......................A...T...T......C.............C...............G..T.......G...A..............................C.................................................. 10 10 , 10 10 112:>KF789938,A/California/46/2012(H3N2) 113 >KF790463,A/Nevada/02/2013(H3N2) .......................A...T...T......C.............C...............G..T.......G...A..............................C.................................................. 10 10 , 10 10 113:>KF790463,A/Nevada/02/2013(H3N2) 114 >KF789726,A/Missouri/04/2013(H3N2) .......................A...T...T......C.............C...............G..T.......G...A..............................C.................................................. 10 10 , 10 10 114:>KF789726,A/Missouri/04/2013(H3N2) 115 >KF789555,A/California/13/2013(H3N2) .......................A...T...T......C.............C...............G..T.......G...A..............................C.................................................. 10 10 , 10 10 115:>KF789555,A/California/13/2013(H3N2) 116 >KF789602,A/West Virginia/20/2012(H3N2) .......................A...T...T......C.............C...............G..T.......G...A..............................C.................................................. 10 10 , 10 10 116:>KF789602,A/West Virginia/20/2012(H3N2) 117 >KF789742,A/South Dakota/01/2013(H3N2) .......................A...T...T......C.............C...............G..T.......G...A..............................C.................................................. 10 10 , 10 10 117:>KF789742,A/South Dakota/01/2013(H3N2) 118 >KF789806,A/South Dakota/12/2012(H3N2) .......................A...T...T......C.............C...............G..T.......G...A..............................C.................................................. 10 10 , 10 10 118:>KF789806,A/South Dakota/12/2012(H3N2) 119 >KF789942,A/North Dakota/08/2012(H3N2) .......................A...T...T......C.............C...............G..T.......G...A..............................C.................................................. 10 10 , 10 10 119:>KF789942,A/North Dakota/08/2012(H3N2) 120 >KF790175,A/Michigan/25/2012(H3N2) .......................A...T...T......C.............C...............G..T.......G...A..............................C.................................................. 10 10 , 10 10 120:>KF790175,A/Michigan/25/2012(H3N2) 121 >KF789955,A/Ohio/01/2013(H3N2) .......................A...T...T......C.............C...............G..T.......G...A..............................C.............................G.................... 11 11 , 11 11 121:>KF789955,A/Ohio/01/2013(H3N2) 122 >KF790376,A/Ohio/01/2013(H3N2) .......................A...T...T......C.............C...............G..T.......G...A..............................C.............................G.................... 11 11 , 11 11 122:>KF790376,A/Ohio/01/2013(H3N2) 123 >KF790443,A/Wyoming/20/2012(H3N2) .......................A...T...T......C.............C...............G..T.......G...A..............................C...............................A.................. 11 11 , 11 11 123:>KF790443,A/Wyoming/20/2012(H3N2) 124 >KF789730,A/Vermont/19/2012(H3N2) ....................C..A...T...T......C.............C...............G..T.......G...A..............................C.................................................. 11 11 , 11 11 124:>KF789730,A/Vermont/19/2012(H3N2) 125 >KF789636,A/Nebraska/06/2013(H3N2) .......................A...T...T......C.............................G..T.......G...A......C.......................................................................... 9 9 , 9 9 125:>KF789636,A/Nebraska/06/2013(H3N2) 126 >KF790304,A/Nebraska/15/2012(H3N2) .......................A...T..........C..C..........................G..T.......G...A......C...................................................................A...... 10 10 , 10 10 126:>KF790304,A/Nebraska/15/2012(H3N2) 127 >KF789647,A/Nebraska/03/2013(H3N2) .......................A...T..........C..C..........................G..T.......G...A..........................................................................A...... 9 9 , 9 9 127:>KF789647,A/Nebraska/03/2013(H3N2) 128 >KF790251,A/Iowa/14/2012(H3N2) .......................A...T..........C.............................G..T.......G...A..........................................................................A...... 8 8 , 8 8 128:>KF790251,A/Iowa/14/2012(H3N2) 129 >KF789577,A/Florida/46/2012(H3N2) .......................A...T..........C.............................G..T.......G...A..........................................................................A...... 8 8 , 8 8 129:>KF789577,A/Florida/46/2012(H3N2) 130 >KF789892,A/New Hampshire/21/2012(H3N2) .......................A...T..........C.............................G..T.......G...A..........................................................................A...... 8 8 , 8 8 130:>KF789892,A/New Hampshire/21/2012(H3N2) 131 >KF790217,A/Iowa/15/2012(H3N2) .......................A...T..........C.............................G..T.......G...A..........................................................................A...... 8 8 , 8 8 131:>KF790217,A/Iowa/15/2012(H3N2) 132 >KF789890,A/Wisconsin/51/2012(H3N2) .......................A...T..........C.............................G..T.......G...A..........................................................................A...... 8 8 , 8 8 132:>KF789890,A/Wisconsin/51/2012(H3N2) 133 >KF789807,A/Iowa/22/2012(H3N2) .......................A...T..........C..............A..............G..T.......G...A..........................................................................A...... 9 9 , 9 9 133:>KF789807,A/Iowa/22/2012(H3N2) 134 >KF790279,A/Texas/82/2012(H3N2) ...A...................A...T..........C.............................G..T.......G...A..........................................................................A...... 9 9 , 9 9 134:>KF790279,A/Texas/82/2012(H3N2) 135 >KF790465,A/Iowa/01/2013(H3N2) .......................A...T..........C....T........................G..T.......G...A..........................................................................A...... 9 9 , 9 9 135:>KF790465,A/Iowa/01/2013(H3N2) 136 >KF790263,A/Oklahoma/05/2012(H3N2) .......................A...T..........C....T........................G..T.......G...A................................................................................. 8 8 , 8 8 136:>KF790263,A/Oklahoma/05/2012(H3N2) 137 >KF789754,A/Kansas/14/2012(H3N2) .......................A...T..........C.............................G..T.......G...A...........................................................T..................... 8 8 , 8 8 137:>KF789754,A/Kansas/14/2012(H3N2) 138 >KF789893,A/Massachusetts/15/2012(H3N2) .......................A...T..........C.............................G..T.......G...A...............................R................................................. 8 8 , 8 8 138:>KF789893,A/Massachusetts/15/2012(H3N2) 139 >KF790080,A/Vermont/28/2012(H3N2) ..............Y........A...T..........C.............................G..T.......G...A................................................................................. 8 8 , 8 8 139:>KF790080,A/Vermont/28/2012(H3N2) 140 >KF789572,A/Utah/02/2013(H3N2) .......................A...T..........C.............................G..T.......G...A..............................................................T.................. 8 8 , 8 8 140:>KF789572,A/Utah/02/2013(H3N2) 141 >KF789815,A/Washington/61/2012(H3N2) .......................A...T..........C........................A....G..T.......G...A................................................................................. 8 8 , 8 8 141:>KF789815,A/Washington/61/2012(H3N2) 142 >KF789574,A/North Carolina/24/2012(H3N2) .......................A...T..........C.............C...............G..T.......G...A................................................................................. 8 8 , 8 8 142:>KF789574,A/North Carolina/24/2012(H3N2) 143 >KF789594,A/Indiana/164/2012(H3N2) ............T..........A...T..........C.............C...............G..........G...A..............................................A................G................. 10 10 , 10 10 143:>KF789594,A/Indiana/164/2012(H3N2) 144 >KF790260,A/Indiana/162/2012(H3N2) .......................A...T..........C.............C...............G..........G...A..............................................A................G................. 9 9 , 9 9 144:>KF790260,A/Indiana/162/2012(H3N2) 145 >KF790111,A/Colorado/18/2012(H3N2) .......................A...T..........C.............C...............G..T.......G...A.............................A................A.................................. 10 10 , 10 10 145:>KF790111,A/Colorado/18/2012(H3N2) 146 >KF790200,A/Colorado/18/2012(H3N2) .......................A...T..........C.............C...............G..T.......G...A.............................A................A.................................. 10 10 , 10 10 146:>KF790200,A/Colorado/18/2012(H3N2) 147 >KF789653,A/Alabama/07/2013(H3N2) .......................A...T..........C.............C...............G..T.......G...A..................................A...........A.................................. 10 10 , 10 10 147:>KF789653,A/Alabama/07/2013(H3N2) 148 >KF789551,A/Nevada/04/2013(H3N2) .......................A...T..........C.............C...............G..T.......G...A.........................................A....A.................................. 10 10 , 10 10 148:>KF789551,A/Nevada/04/2013(H3N2) 149 >KF790395,A/Massachusetts/05/2013(H3N2) .......................A...T..........C.............................G..T.......G...A..............................................A.................................. 8 8 , 8 8 149:>KF790395,A/Massachusetts/05/2013(H3N2) 150 >KF790409,A/New York/06/2013(H3N2) .......................A...T..........C.............................G..T.......G...A........................A........................................................ 8 8 , 8 8 150:>KF790409,A/New York/06/2013(H3N2) 151 >KF789626,A/North Carolina/04/2013(H3N2) .......................A...T.......A..C.............................G..T.......G...A........................A.......A................................................ 10 10 , 10 10 151:>KF789626,A/North Carolina/04/2013(H3N2) 152 >KF789898,A/New Jersey/03/2013(H3N2) .........A.............A...T..........C.............................G..T.......G...A................................A................................................ 9 9 , 9 9 152:>KF789898,A/New Jersey/03/2013(H3N2) 153 >KF790017,A/Wisconsin/08/2013(H3N2) .........A.............A...T..........C.............................G..T.......G...A................................................................................. 8 8 , 8 8 153:>KF790017,A/Wisconsin/08/2013(H3N2) 154 >KF790490,A/Oregon/11/2012(H3N2) .........T.............A...T..........C.............................G..T.......G...A................................................................................. 8 8 , 8 8 154:>KF790490,A/Oregon/11/2012(H3N2) 155 >KF790281,A/New York/39/2012(H3N2) .......................A...T..........C.............................G..T.......G...A................................................................................. 7 7 , 7 7 155:>KF790281,A/New York/39/2012(H3N2) 156 >KF790014,A/Oklahoma/08/2013(H3N2) .......................A...T..........C.............................G..T.......G...A................................................................................. 7 7 , 7 7 156:>KF790014,A/Oklahoma/08/2013(H3N2) 157 >KF789985,A/Washington/50/2012(H3N2) .......................A...T..........C.............................G..T.......G...A................................................................................. 7 7 , 7 7 157:>KF789985,A/Washington/50/2012(H3N2) 158 >KF789948,A/Washington/07/2013(H3N2) .......................A...T..........C.............................G..T.......G...A................................................................................. 7 7 , 7 7 158:>KF789948,A/Washington/07/2013(H3N2) 159 >KF790326,A/District Of Columbia/02/2012(H3N2) .......................A...T..........C.............................G..T.......G...A................................................................................. 7 7 , 7 7 159:>KF790326,A/District Of Columbia/02/2012(H3N2) 160 >KF789887,A/Virginia/03/2013(H3N2) .......................A...T..........C.............................G..T.......G...A................................................................................. 7 7 , 7 7 160:>KF789887,A/Virginia/03/2013(H3N2) 161 >KF790353,A/Indiana/01/2013(H3N2) .......................A...T..........C.............................G..T.......G...A................................................................................. 7 7 , 7 7 161:>KF790353,A/Indiana/01/2013(H3N2) 162 >KF790366,A/District Of Columbia/01/2013(H3N2) .......................A...T..........C.............................G..T.......G...A................................................................................. 7 7 , 7 7 162:>KF790366,A/District Of Columbia/01/2013(H3N2) 163 >KF790379,A/Minnesota/04/2013(H3N2) .......................A...T..........C.............................G..T.......G...A................................................................................. 7 7 , 7 7 163:>KF790379,A/Minnesota/04/2013(H3N2) 164 >KF789651,A/Alaska/06/2013(H3N2) .......................A...T..........C.............................G..T.......G...A................................................................................. 7 7 , 7 7 164:>KF789651,A/Alaska/06/2013(H3N2) 165 >KF790497,A/Minnesota/17/2012(H3N2) .......................A...T..........C.............................G..T.......G...A................................................................................. 7 7 , 7 7 165:>KF790497,A/Minnesota/17/2012(H3N2) 166 >KF790423,A/Arizona/11/2012(H3N2) .......................A...T..........C.............................G..T.......G...A................................................................................. 7 7 , 7 7 166:>KF790423,A/Arizona/11/2012(H3N2) 167 >KF789552,A/Colorado/02/2013(H3N2) .......................A...T..........C.............................G..T.......G...A................................................................................. 7 7 , 7 7 167:>KF789552,A/Colorado/02/2013(H3N2) 168 >Index/32g12f1.c2,10-37 .......................A...T..........C.............................G..T.......G...A................................................................................. 7 7 , 7 7 168:>Index/32g12f1.c2,10-37 169 >KF789548,A/Idaho/03/2013(H3N2) .......................A...T..........C.............................G..T.......G...A................................................................................. 7 7 , 7 7 169:>KF789548,A/Idaho/03/2013(H3N2) 170 >KF789576,A/Montana/13/2012(H3N2) .......................A...T..........C.............................G..T.......G...A................................................................................. 7 7 , 7 7 170:>KF789576,A/Montana/13/2012(H3N2) 171 >KF789598,A/New Jersey/04/2012(H3N2) .......................A...T..........C.............................G..T.......G...A................................................................................. 7 7 , 7 7 171:>KF789598,A/New Jersey/04/2012(H3N2) 172 >KF789631,A/Texas/09/2013(H3N2) .......................A...T..........C.............................G..T.......G...A................................................................................. 7 7 , 7 7 172:>KF789631,A/Texas/09/2013(H3N2) 173 >KF790385,A/Alaska/05/2013(H3N2) .......................A...T..........C.............................G..T.......G...A................................................................................. 7 7 , 7 7 173:>KF790385,A/Alaska/05/2013(H3N2) 174 >KF789738,A/Alaska/01/2013(H3N2) .......................A...T..........C.............................G..T.......G...A................................................................................. 7 7 , 7 7 174:>KF789738,A/Alaska/01/2013(H3N2) 175 >KF789831,A/New York/47/2012(H3N2) .......................A...T..........C.............................G..T.......G...A................................................................................. 7 7 , 7 7 175:>KF789831,A/New York/47/2012(H3N2) 176 >KF790341,A/Utah/03/2013(H3N2) .......................A...T..........C.............................G..T.......G...A................................................................................. 7 7 , 7 7 176:>KF790341,A/Utah/03/2013(H3N2) 177 >KF790328,A/New Jersey/02/2013(H3N2) .......................A...T..........C.............................G..T.......G...A................................................................................. 7 7 , 7 7 177:>KF790328,A/New Jersey/02/2013(H3N2) 178 >KF789946,A/Delaware/24/2012(H3N2) .......................A...T..........C.............................G..T.......G...A................................................................................. 7 7 , 7 7 178:>KF789946,A/Delaware/24/2012(H3N2) 179 >KF789961,A/Rhode Island/02/2013(H3N2) .......................A...T..........C.............................G..T.......G...A................................................................................. 7 7 , 7 7 179:>KF789961,A/Rhode Island/02/2013(H3N2) 180 >KF790008,A/Texas/81/2012(H3N2) .......................A...T..........C.............................G..T.......G...A................................................................................. 7 7 , 7 7 180:>KF790008,A/Texas/81/2012(H3N2) 181 >KF790221,A/Arizona/09/2012(H3N2) .......................A...T..........C.............................G..T.......G...A................................................................................. 7 7 , 7 7 181:>KF790221,A/Arizona/09/2012(H3N2) 182 >KF790043,A/Florida/09/2013(H3N2) .......................A...T..........C.............................G..T.......G...A................................................................................. 7 7 , 7 7 182:>KF790043,A/Florida/09/2013(H3N2) 183 >KF790273,A/California/42/2012(H3N2) .......................A...T..........C.............................G..T.......G...A................................................................................. 7 7 , 7 7 183:>KF790273,A/California/42/2012(H3N2) 184 >KF790124,A/California/04/2013(H3N2) .......................A...T..........C.............................G..T.......G...A................................................................................. 7 7 , 7 7 184:>KF790124,A/California/04/2013(H3N2) 185 >KF790247,A/New York/39/2012(H3N2) .......................A...T..........C.............................G..T.......G...A................................................................................. 7 7 , 7 7 185:>KF790247,A/New York/39/2012(H3N2) 186 >KF790194,A/Florida/40/2012(H3N2) .......................A...T..........C.............................G..T.......G...A................................................................................. 7 7 , 7 7 186:>KF790194,A/Florida/40/2012(H3N2) 187 >KF790451,A/Oklahoma/05/2013(H3N2) .......................A...T..........C.............................G..T.......G...A................................................................................. 7 7 , 7 7 187:>KF790451,A/Oklahoma/05/2013(H3N2) 188 >KF790168,A/New York/37/2012(H3N2) .......................A...T..........C.............................G..T.......G...A................................................................................. 7 7 , 7 7 188:>KF790168,A/New York/37/2012(H3N2) 189 >KF790130,A/Colorado/27/2012(H3N2) .......................A...T..........C.............................G..T.......G...A................................................................................. 7 7 , 7 7 189:>KF790130,A/Colorado/27/2012(H3N2) 190 >KF790267,A/Alabama/18/2012(H3N2) .......................A...T..........C.............................G..T.......G...A................................................................................. 7 7 , 7 7 190:>KF790267,A/Alabama/18/2012(H3N2) 191 >KF790079,A/Nebraska/02/2013(H3N2) .......................A...T..........C.............................G..T.......G...A................................................................................. 7 7 , 7 7 191:>KF790079,A/Nebraska/02/2013(H3N2) 192 >KF790261,A/Rhode Island/08/2012(H3N2) .......................A...T..........C.............................G..T.......G...A................................................................................. 7 7 , 7 7 192:>KF790261,A/Rhode Island/08/2012(H3N2) 193 >KF790250,A/Indiana/161/2012(H3N2) .......................A...T..........C.............................G..T.......G...A................................................................................. 7 7 , 7 7 193:>KF790250,A/Indiana/161/2012(H3N2) 194 >KF790186,A/Washington/52/2012(H3N2) .......................A...T..........C.............................G..T.......G...A................................................................................. 7 7 , 7 7 194:>KF790186,A/Washington/52/2012(H3N2) 195 >KF790215,A/Delaware/10/2012(H3N2) .......................A...T..........C.............................G..T.......G...A................................................................................. 7 7 , 7 7 195:>KF790215,A/Delaware/10/2012(H3N2) 196 >KF790453,A/North Dakota/01/2013(H3N2) .......................A...T..........C.............................G..T.......G...A................................................................................. 7 7 , 7 7 196:>KF790453,A/North Dakota/01/2013(H3N2) 197 >KF790159,A/Virginia/06/2013(H3N2) .......................A...T..........C.............................G..T.......G...A................................................................................. 7 7 , 7 7 197:>KF790159,A/Virginia/06/2013(H3N2) 198 >KF790082,A/Minnesota/01/2013(H3N2) .......................A...T..........C.............................G..T.......G...A................................................................................. 7 7 , 7 7 198:>KF790082,A/Minnesota/01/2013(H3N2) 199 >KF790074,A/Vermont/28/2012(H3N2) .......................A...T..........C.............................G..T.......G...A................................................................................. 7 7 , 7 7 199:>KF790074,A/Vermont/28/2012(H3N2) 200 >KF790291,A/Arizona/09/2012(H3N2) .......................A...T..........C.............................G..T.......G...A................................................................................. 7 7 , 7 7 200:>KF790291,A/Arizona/09/2012(H3N2) 201 >KF790018,A/New York/05/2013(H3N2) .......................A...T..........C.............................G..T.......G...A................................................................................. 7 7 , 7 7 201:>KF790018,A/New York/05/2013(H3N2) 202 >KF789996,A/New York/35/2012(H3N2) .......................A...T..........C.............................G..T.......G...A................................................................................. 7 7 , 7 7 202:>KF789996,A/New York/35/2012(H3N2) 203 >KF790309,A/Missouri/02/2013(H3N2) .......................A...T..........C.............................G..T.......G...A................................................................................. 7 7 , 7 7 203:>KF790309,A/Missouri/02/2013(H3N2) 204 >KF790324,A/Maryland/01/2013(H3N2) .......................A...T..........C.............................G..T.......G...A................................................................................. 7 7 , 7 7 204:>KF790324,A/Maryland/01/2013(H3N2) 205 >KF789917,A/North Carolina/01/2013(H3N2) .......................A...T..........C.............................G..T.......G...A................................................................................. 7 7 , 7 7 205:>KF789917,A/North Carolina/01/2013(H3N2) 206 >KF789859,A/Michigan/02/2013(H3N2) .......................A...T..........C.............................G..T.......G...A................................................................................. 7 7 , 7 7 206:>KF789859,A/Michigan/02/2013(H3N2) 207 >KF789751,A/New Mexico/05/2013(H3N2) .......................A...T..........C.............................G..T.......G...A................................................................................. 7 7 , 7 7 207:>KF789751,A/New Mexico/05/2013(H3N2) 208 >KF789712,A/Texas/91/2012(H3N2) .......................A...T..........C.............................G..T.......G...A................................................................................. 7 7 , 7 7 208:>KF789712,A/Texas/91/2012(H3N2) 209 >KF789663,A/Alabama/17/2012(H3N2) .......................A...T..........C.............................G..T.......G...A................................................................................. 7 7 , 7 7 209:>KF789663,A/Alabama/17/2012(H3N2) 210 >KC892572,A/Pennsylvania/09/2012(H3N2) .......................A...T..........C.............................G..T.......G...A................................................................................. 7 7 , 7 7 210:>KC892572,A/Pennsylvania/09/2012(H3N2) 211 >KF790420,A/New Hampshire/03/2013(H3N2) .......................A...T..........C.............................G..T.......G...A................................................................................. 7 7 , 7 7 211:>KF790420,A/New Hampshire/03/2013(H3N2) 212 >KF789556,A/California/15/2013(H3N2) .......................A...T..........C.............................G..T.......G...A................................................................................. 7 7 , 7 7 212:>KF789556,A/California/15/2013(H3N2) 213 >KF789533,A/Washington/06/2013(H3N2) .......................A...T..........C.............................G..T.......G...A................................................................................. 7 7 , 7 7 213:>KF789533,A/Washington/06/2013(H3N2) 214 >KF790444,A/Delaware/15/2012(H3N2) .......................A...T..........C.............................G..T.......G...A................................................................................. 7 7 , 7 7 214:>KF790444,A/Delaware/15/2012(H3N2) 215 >KF789557,A/Florida/06/2013(H3N2) .......................A...T..........C.............................G..T.......G...A................................................................................. 7 7 , 7 7 215:>KF789557,A/Florida/06/2013(H3N2) 216 >KF789583,A/Alabama/24/2012(H3N2) .......................A...T..........C.............................G..T.......G...A................................................................................. 7 7 , 7 7 216:>KF789583,A/Alabama/24/2012(H3N2) 217 >KF789629,A/California/16/2013(H3N2) .......................A...T..........C.............................G..T.......G...A................................................................................. 7 7 , 7 7 217:>KF789629,A/California/16/2013(H3N2) 218 >KF789698,A/Pennsylvania/09/2012(H3N2) .......................A...T..........C.............................G..T.......G...A................................................................................. 7 7 , 7 7 218:>KF789698,A/Pennsylvania/09/2012(H3N2) 219 >KF790375,A/Oklahoma/05/2013(H3N2) .......................A...T..........C.............................G..T.......G...A................................................................................. 7 7 , 7 7 219:>KF790375,A/Oklahoma/05/2013(H3N2) 220 >KF789768,A/Oregon/12/2012(H3N2) .......................A...T..........C.............................G..T.......G...A................................................................................. 7 7 , 7 7 220:>KF789768,A/Oregon/12/2012(H3N2) 221 >KF789869,A/Hawaii/02/2013(H3N2) .......................A...T..........C.............................G..T.......G...A................................................................................. 7 7 , 7 7 221:>KF789869,A/Hawaii/02/2013(H3N2) 222 >KF789928,A/Maryland/30/2012(H3N2) .......................A...T..........C.............................G..T.......G...A................................................................................. 7 7 , 7 7 222:>KF789928,A/Maryland/30/2012(H3N2) 223 >KF790320,A/Washington/04/2013(H3N2) .......................A...T..........C.............................G..T.......G...A................................................................................. 7 7 , 7 7 223:>KF790320,A/Washington/04/2013(H3N2) 224 >KF790113,A/Alabama/17/2012(H3N2) .......................A...T..........C.............................G..T.......G...A................................................................................. 7 7 , 7 7 224:>KF790113,A/Alabama/17/2012(H3N2) 225 >KF790003,A/Montana/10/2012(H3N2) .......................A...T..........C.............................G..T.......G...A................................................................................. 7 7 , 7 7 225:>KF790003,A/Montana/10/2012(H3N2) 226 >KF790022,A/North Dakota/02/2013(H3N2) .......................A...T..........C.............................G..T.......G...A................................................................................. 7 7 , 7 7 226:>KF790022,A/North Dakota/02/2013(H3N2) 227 >KF790061,A/Delaware/01/2013(H3N2) .......................A...T..........C.............................G..T.......G...A................................................................................. 7 7 , 7 7 227:>KF790061,A/Delaware/01/2013(H3N2) 228 >KF790293,A/New Hampshire/12/2012(H3N2) .......................A...T..........C.............................G..T.......G...A...C............................................................................. 8 8 , 8 8 228:>KF790293,A/New Hampshire/12/2012(H3N2) 229 >KF789995,A/Hawaii/26/2012(H3N2) .......................A...T..........C.............................G..T.......G...A...C............................................................................. 8 8 , 8 8 229:>KF789995,A/Hawaii/26/2012(H3N2) 230 >KF790426,A/Pennsylvania/21/2012(H3N2) .......................A...T..........C.............................G..T.......G...A...C............................................................................. 8 8 , 8 8 230:>KF790426,A/Pennsylvania/21/2012(H3N2) 231 >KF790436,A/Massachusetts/07/2012(H3N2) .......................A...T..........C.............................G..T.......G...A...C............................................................................. 8 8 , 8 8 231:>KF790436,A/Massachusetts/07/2012(H3N2) 232 >KF790183,A/Hawaii/28/2012(H3N2) .......................A...T..........C.............................G..T.......G...A...C............................................................................. 8 8 , 8 8 232:>KF790183,A/Hawaii/28/2012(H3N2) 233 >KF790006,A/Hawaii/25/2012(H3N2) .......................A...T..........C.............................G..T.......G...A...C............................................................................. 8 8 , 8 8 233:>KF790006,A/Hawaii/25/2012(H3N2) 234 >KF790280,A/New York/38/2012(H3N2) .......................A...T..........C.............................G..T.......G...A...C............................................................................. 8 8 , 8 8 234:>KF790280,A/New York/38/2012(H3N2) 235 >KF790240,A/Hawaii/29/2012(H3N2) .......................A...T..........C.............................G..T.......G...A...C............................................................................. 8 8 , 8 8 235:>KF790240,A/Hawaii/29/2012(H3N2) 236 >KF789916,A/Hawaii/45/2012(H3N2) .......................A...T..........C.............................G..T.......G...A...C............................................................................. 8 8 , 8 8 236:>KF789916,A/Hawaii/45/2012(H3N2) 237 >KF790219,A/New York/38/2012(H3N2) .......................A...T..........C.............................G..T.......G...A...C............................................................................. 8 8 , 8 8 237:>KF790219,A/New York/38/2012(H3N2) 238 >KF789987,A/Hawaii/25/2012(H3N2) .......................A...T..........C.............................G..T.......G...A...C............................................................................. 8 8 , 8 8 238:>KF789987,A/Hawaii/25/2012(H3N2) 239 >KF789997,A/Hawaii/26/2012(H3N2) .......................A...T..........C.............................G..T.......G...A...C............................................................................. 8 8 , 8 8 239:>KF789997,A/Hawaii/26/2012(H3N2) 240 >KF790276,A/Hawaii/30/2012(H3N2) .......................A...T..........C.............................G..T.......G...A...C............................................................................. 8 8 , 8 8 240:>KF790276,A/Hawaii/30/2012(H3N2) 241 >KF789933,A/California/49/2012(H3N2) .......................A...T.....T....C.............................G..T.......G...A...C............................................................................. 9 9 , 9 9 241:>KF789933,A/California/49/2012(H3N2) 242 >KF789875,A/New Hampshire/11/2012(H3N2) .......................A...T..........C.............................G..T.......G...A...C...............................................................G............. 9 9 , 9 9 242:>KF789875,A/New Hampshire/11/2012(H3N2) 243 >KF789659,A/New Hampshire/11/2012(H3N2) .......................A...T..........C.............................G..T.......G...A...C...............................................................G............. 9 9 , 9 9 243:>KF789659,A/New Hampshire/11/2012(H3N2) 244 >KF790450,A/New Mexico/03/2013(H3N2) .......................A...T..........C.............................G..T.......G...A...CA............................................................................ 9 9 , 9 9 244:>KF790450,A/New Mexico/03/2013(H3N2) 245 >KF789900,A/Rhode Island/06/2013(H3N2) .............G.........A...T..........C.............................G..T.......G...A............................................C.................................... 9 9 , 9 9 245:>KF789900,A/Rhode Island/06/2013(H3N2) 246 >KF789558,A/Michigan/01/2013(H3N2) A......................A...T..........C............T................G..T.......G...A................................................................................. 9 9 , 9 9 246:>KF789558,A/Michigan/01/2013(H3N2) 247 >KF790097,A/Wyoming/18/2012(H3N2) .......................A...T..........C.............................G..T.......G...A...........................C.......A............................................. 9 9 , 9 9 247:>KF790097,A/Wyoming/18/2012(H3N2) 248 >KF789538,A/Pennsylvania/03/2013(H3N2) .......................A...T..........C.............................G..T.......G...AC................................................................................ 8 8 , 8 8 248:>KF789538,A/Pennsylvania/03/2013(H3N2) 249 >KF789834,A/Rhode Island/09/2012(H3N2) .......................A...T..........C.............................G..T.......G...AC................................................................................ 8 8 , 8 8 249:>KF789834,A/Rhode Island/09/2012(H3N2) 250 >KF789773,A/North Carolina/28/2012(H3N2) .......................A...T..........C..................T..........G..T.......G...A................................................................................. 8 8 , 8 8 250:>KF789773,A/North Carolina/28/2012(H3N2) 251 >KF789735,A/Montana/03/2013(H3N2) .......................A...T..........C..................T..........G..T.......G...A................................................................................. 8 8 , 8 8 251:>KF789735,A/Montana/03/2013(H3N2) 252 >KF789853,A/West Virginia/10/2013(H3N2) .......................A...T..........C..................T..........G..T.......G...A..................................................C.............................. 9 9 , 9 9 252:>KF789853,A/West Virginia/10/2013(H3N2) 253 >KF789856,A/West Virginia/05/2013(H3N2) .......................A...T..........C..................T..........G..T.......G...A..................................................C.............................. 9 9 , 9 9 253:>KF789856,A/West Virginia/05/2013(H3N2) 254 >KF789854,A/West Virginia/11/2013(H3N2) .......................A...T..........C..................T..........G..T.......G...A..................................................C.............................. 9 9 , 9 9 254:>KF789854,A/West Virginia/11/2013(H3N2) 255 >KF789851,A/West Virginia/06/2013(H3N2) .......................A...T..........C..................T..........G..T.......G...A..................................................C.............................. 9 9 , 9 9 255:>KF789851,A/West Virginia/06/2013(H3N2) 256 >KF789945,A/Texas/01/2013(H3N2) .......................A...T..........C.............................G..T.......G...A..........G...................................................................... 8 8 , 8 8 256:>KF789945,A/Texas/01/2013(H3N2) 257 >KF789703,A/Montana/14/2012(H3N2) .......................A...T..........C.............................G..T......AG...A................................................................................. 8 8 , 8 8 257:>KF789703,A/Montana/14/2012(H3N2) 258 >KF790433,A/Delaware/11/2012(H3N2) .......................A...T..........C.............................G..T.......G...A.....................................................................A........... 8 8 , 8 8 258:>KF790433,A/Delaware/11/2012(H3N2) 259 >KF790301,A/Delaware/07/2013(H3N2) .......................AA..T..........C.............................G..T.......G...A................................................................................. 8 8 , 8 8 259:>KF790301,A/Delaware/07/2013(H3N2) 260 >KF790338,A/Kentucky/01/2013(H3N2) .......................A...T..........C.............................G..T.......G...A........................................................................G........ 8 8 , 8 8 260:>KF790338,A/Kentucky/01/2013(H3N2) 261 >KF790070,A/Oregon/15/2012(H3N2) .......................A...T..........C.......G.....................G..T.......G...A................................................................................. 8 8 , 8 8 261:>KF790070,A/Oregon/15/2012(H3N2) 262 >KF789610,A/Wyoming/03/2013(H3N2) .......................A...T..........C.............................G..T.......G...A..............A.................................................................. 8 8 , 8 8 262:>KF789610,A/Wyoming/03/2013(H3N2) 263 >KF790340,A/California/18/2013(H3N2) ........G..............A...T..........C.............................G..T.......G...A................................................................................. 8 8 , 8 8 263:>KF790340,A/California/18/2013(H3N2) 264 >KF789649,A/New Mexico/11/2013(H3N2) ...R...................A...T..........C.............................G..T.......G...A................................................................................. 8 8 , 8 8 264:>KF789649,A/New Mexico/11/2013(H3N2) 265 >KF789717,A/Nevada/27/2012(H3N2) .......................A...T..........C.....A.......................G..T.......G...A................................................................................A 9 9 , 9 9 265:>KF789717,A/Nevada/27/2012(H3N2) 266 >KF790315,A/Nevada/36/2012(H3N2) .......................A...T..........C.....A.......................G..T.......G...A................................................................................A 9 9 , 9 9 266:>KF790315,A/Nevada/36/2012(H3N2) 267 >KF790506,A/Nevada/03/2013(H3N2) .......................A...T..........C.....A.......................G..T.......G...A................................................................................A 9 9 , 9 9 267:>KF790506,A/Nevada/03/2013(H3N2) 268 >KF789824,A/Idaho/38/2012(H3N2) .......................A...T..........C.............................G..T.......G...A................................................................................A 8 8 , 8 8 268:>KF789824,A/Idaho/38/2012(H3N2) 269 >KF790489,A/Utah/27/2012(H3N2) .......................A...T..........C.............................G..T.......G...A................................................................................A 8 8 , 8 8 269:>KF790489,A/Utah/27/2012(H3N2) 270 >KF790505,A/Washington/53/2012(H3N2) .......................A...T..........C.............................G..T.......G...A................................................................................A 8 8 , 8 8 270:>KF790505,A/Washington/53/2012(H3N2) 271 >KF789959,A/Montana/01/2013(H3N2) .......................A...T..........C.............................G..T.......G...A................................................................................A 8 8 , 8 8 271:>KF789959,A/Montana/01/2013(H3N2) 272 >KF790102,A/Idaho/23/2012(H3N2) .......................A...T..........C.............................G..T.......G...A................................................................................A 8 8 , 8 8 272:>KF790102,A/Idaho/23/2012(H3N2) 273 >KF789798,A/Idaho/37/2012(H3N2) .......................A...T..........C.............................G..T.......G...A................................................................................A 8 8 , 8 8 273:>KF789798,A/Idaho/37/2012(H3N2) 274 >KF790515,A/Idaho/24/2012(H3N2) .......................A...T..........C.............................G..T.......G...A................................................................................A 8 8 , 8 8 274:>KF790515,A/Idaho/24/2012(H3N2) 275 >KF789929,A/Maryland/29/2012(H3N2) .......................A...T..........C.............................G..T.......G...A............A.....................A.............................G................ 10 10 , 10 10 275:>KF789929,A/Maryland/29/2012(H3N2) 276 >KF790026,A/New Mexico/08/2013(H3N2) .......................A...T..........C.............................G..T.......G...A................................................................G................ 8 8 , 8 8 276:>KF790026,A/New Mexico/08/2013(H3N2) 277 >KF789608,A/Oklahoma/06/2013(H3N2) .......................A...T..........C.............................G..T.......G...A................................................................G................ 8 8 , 8 8 277:>KF789608,A/Oklahoma/06/2013(H3N2) 278 >KF789564,A/Florida/12/2013(H3N2) .......................A...T..........C.............................G..T.......G...A.........G....................................................................... 8 8 , 8 8 278:>KF789564,A/Florida/12/2013(H3N2) 279 >KF790332,A/Massachusetts/04/2013(H3N2) .......................A...T..........C.............................G..T...........A................................................................................. 6 6 , 6 6 279:>KF790332,A/Massachusetts/04/2013(H3N2) 280 >KF789786,A/Washington/60/2012(H3N2) .......................A...T..........C.............................G..T.......G...A.......................T......................................................... 8 8 , 8 8 280:>KF789786,A/Washington/60/2012(H3N2) 281 >KC892272,A/Alaska/04/2012(H3N2) ..G....................A...T....C.....C.............................G..T.......G...A................................................................................. 9 9 , 9 9 281:>KC892272,A/Alaska/04/2012(H3N2) 282 >KF790090,A/Alaska/04/2012(H3N2) ..G....................A...T....C.....C.............................G..T.......G...A................................................................................. 9 9 , 9 9 282:>KF790090,A/Alaska/04/2012(H3N2) 283 >KF790386,A/Maryland/05/2013(H3N2) .......................A...T..........C.............................G..T.A.....G...A.........................................................G....................... 9 9 , 9 9 283:>KF790386,A/Maryland/05/2013(H3N2) 284 >KF789700,A/Maine/05/2012(H3N2) .......................A...T..........C.............................G..T.......G.......................C............................................................. 7 7 , 7 7 284:>KF789700,A/Maine/05/2012(H3N2) 285 >KC892737,A/Maine/05/2012(H3N2) .......................A...T..........C.............................G..T.......G.......................C............................................................. 7 7 , 7 7 285:>KC892737,A/Maine/05/2012(H3N2) 286 >KF789578,A/New Hampshire/16/2012(H3N2) .......................A...T..........C............................AG..T.......G.G.R................................................................................. 9 9 , 9 9 286:>KF789578,A/New Hampshire/16/2012(H3N2) 287 >KF789652,A/Delaware/06/2013(H3N2) ......G................A...T..........C..A..........................G..T.......G...A................................................................................. 9 9 , 9 9 287:>KF789652,A/Delaware/06/2013(H3N2) 288 >KF790528,A/Maryland/33/2012(H3N2) .......................A...T..........C.T...........................G..T.......G...A....................................T............................................ 9 9 , 9 9 288:>KF790528,A/Maryland/33/2012(H3N2) 289 >KF790117,A/Louisiana/04/2013(H3N2) ...............G.......A...T..........C...................A.........G..T.......G...A................................................................................. 9 9 , 9 9 289:>KF790117,A/Louisiana/04/2013(H3N2) 290 >KF790415,A/Delaware/08/2013(H3N2) .......................A...T..........C.....................C....C..G..T.......G...A................................................................................. 9 9 , 9 9 290:>KF790415,A/Delaware/08/2013(H3N2) 291 >A/Czech Republic/121/2012,2012/03/06,Czech Republic .......................A...T..........CC.........A..................G..T.......G...A....................................................................G............ 10 10 , 10 10 291:>A/Czech Republic/121/2012,2012/03/06,Czech Republic 292 >KF790038,A/Massachusetts/07/2013(H3N2) .Y.....................A...T..........C.............................G..T.......G...A....................................................................R............ 9 9 , 9 9 292:>KF790038,A/Massachusetts/07/2013(H3N2) 293 >KF789905,A/New Jersey/05/2013(H3N2) .......................A...T..........C......R..A...................G..T.......G...A................................................................................. 9 9 , 9 9 293:>KF789905,A/New Jersey/05/2013(H3N2) 294 >KF790156,A/North Carolina/02/2013(H3N2) .......................A...T..........C.............................G..T.......G...A..................A..................................C........................... 9 9 , 9 9 294:>KF790156,A/North Carolina/02/2013(H3N2) 295 >KF790152,A/Oklahoma/03/2013(H3N2) .......................A...T..........C.............................G..T.......G...A..................A..................................C........................... 9 9 , 9 9 295:>KF790152,A/Oklahoma/03/2013(H3N2) 296 >KF790056,A/North Carolina/06/2013(H3N2) .......................A...T..G.......C....................R........G..T.......G...A................................................................................. 9 9 , 9 9 296:>KF790056,A/North Carolina/06/2013(H3N2) 297 >KF790062,A/Texas/111/2012(H3N2) .......................A...T........C.C.............................G..T.......G...A.......................................................................G......... 9 9 , 9 9 297:>KF790062,A/Texas/111/2012(H3N2) 298 >KF790319,A/Utah/07/2013(H3N2) ..........GA...........A...T..........C.............................GA.T.......G...A................................................................................. 10 10 , 10 10 298:>KF790319,A/Utah/07/2013(H3N2) 299 >KF790365,A/Texas/11/2013(H3N2) .......................A...T..........C.............................GA.T.......G...A................................................................................. 8 8 , 8 8 299:>KF790365,A/Texas/11/2013(H3N2) 300 >KF789926,A/Hawaii/24/2012(H3N2) .......................A...T..........C.............................GA.T.......G...A................................................................................. 8 8 , 8 8 300:>KF789926,A/Hawaii/24/2012(H3N2) 301 >KF790107,A/Kentucky/16/2012(H3N2) .......................A...T..........C.............................G..T.......G...A.............................................................T................... 8 8 , 8 8 301:>KF790107,A/Kentucky/16/2012(H3N2) 302 >KF790015,A/Florida/08/2013(H3N2) .......................A...T..........C.............................G..T.......G...A......................................A.......................................... 8 8 , 8 8 302:>KF790015,A/Florida/08/2013(H3N2) 303 >KF790412,A/New York/60/2012(H3N2) .......................A...T..........C.............................G..T.......G...A................................................A................................ 8 8 , 8 8 303:>KF790412,A/New York/60/2012(H3N2) 304 >KF789616,A/Maryland/03/2013(H3N2) .......................A...T..........C.............................G..T..T....G...A................................................................................. 8 8 , 8 8 304:>KF789616,A/Maryland/03/2013(H3N2) 305 >KF789611,A/Kentucky/03/2013(H3N2) .......................A...T..........C...............T.............G..T.......G...A................................................................................. 8 8 , 8 8 305:>KF789611,A/Kentucky/03/2013(H3N2) 306 >KF789825,A/Connecticut/13/2012(H3N2) .......................A...T..........C...............T.............G..T.......G...A................................A................................................ 9 9 , 9 9 306:>KF789825,A/Connecticut/13/2012(H3N2) 307 >KF790116,A/Alaska/03/2013(H3N2) .......................A...T..........C.............................G..T.......G...A................................A....T........................................... 9 9 , 9 9 307:>KF790116,A/Alaska/03/2013(H3N2) 308 >KF789839,A/Wisconsin/06/2013(H3N2) .................T.....A...T..........C.............................G..T.......G...A................................A................................................ 9 9 , 9 9 308:>KF789839,A/Wisconsin/06/2013(H3N2) 309 >KF790388,A/Maryland/06/2013(H3N2) .......................A...T..........C.............................G..T.......G...A................T...............A................................................ 9 9 , 9 9 309:>KF790388,A/Maryland/06/2013(H3N2) 310 >KF790352,A/New Mexico/24/2012(H3N2) .......................A...T..........C.............................G..T.......G...A................................A................................................ 8 8 , 8 8 310:>KF790352,A/New Mexico/24/2012(H3N2) 311 >KF789543,A/Massachusetts/06/2013(H3N2) .......................A...T..........C.............................G..T.......G...A................................A................................................ 8 8 , 8 8 311:>KF789543,A/Massachusetts/06/2013(H3N2) 312 >KF789883,A/Kansas/16/2012(H3N2) .......................A...T..........C......................A......G..T.......G...A................................A................................................ 9 9 , 9 9 312:>KF789883,A/Kansas/16/2012(H3N2) 313 >KF789909,A/Wyoming/01/2013(H3N2) .......................A...T..........C......................A......G..T.......G...A................................A................................................ 9 9 , 9 9 313:>KF789909,A/Wyoming/01/2013(H3N2) 314 >KF789981,A/West Virginia/01/2013(H3N2) .......................A...T..........C.............................G..T.......G...A................................R.........................Y...................... 9 9 , 9 9 314:>KF789981,A/West Virginia/01/2013(H3N2) 315 >KF790480,A/Massachusetts/11/2013(H3N2) .......................A...T..........C.............................G..T.......G...A..........................................................A...................... 8 8 , 8 8 315:>KF790480,A/Massachusetts/11/2013(H3N2) 316 >KF789743,A/New Mexico/06/2013(H3N2) .....................G.A...T..........C.............................G..T.......G...A................................................................................. 8 8 , 8 8 316:>KF789743,A/New Mexico/06/2013(H3N2) 317 >KF789691,A/New York/04/2013(H3N2) .......................A...T..........C.............................G..T.......G...A.A............................................................................... 8 8 , 8 8 317:>KF789691,A/New York/04/2013(H3N2) 318 >KF790364,A/Iowa/02/2013(H3N2) .......................A...T..........C.............................G..T.......G...A.A............................................................................... 8 8 , 8 8 318:>KF790364,A/Iowa/02/2013(H3N2) 319 >KF789683,A/New Jersey/08/2012(H3N2) .......................A...T..........C.............................G..T.......G...A.A............................................................................... 8 8 , 8 8 319:>KF789683,A/New Jersey/08/2012(H3N2) 320 >KF790234,A/Pennsylvania/20/2012(H3N2) .......................A...T..........C.............................G..T.......G...A.A............................................................................... 8 8 , 8 8 320:>KF790234,A/Pennsylvania/20/2012(H3N2) 321 >KF789865,A/Arkansas/07/2013(H3N2) .......................A...T..........C........A....................G..T.......G...A.A............................................................................... 9 9 , 9 9 321:>KF789865,A/Arkansas/07/2013(H3N2) 322 >KF790095,A/Arkansas/06/2013(H3N2) .......................A...T..........C........A....................G..T.......G...A.A............................................................................... 9 9 , 9 9 322:>KF790095,A/Arkansas/06/2013(H3N2) 323 >KF789867,A/Arkansas/04/2013(H3N2) .......................A...T..........C........A....................G..T.......G...A.A............................................................................... 9 9 , 9 9 323:>KF789867,A/Arkansas/04/2013(H3N2) 324 >KF790145,A/Arkansas/13/2013(H3N2) .......................A...T..........C........A....................G..T.......G...A.A............................................................................... 9 9 , 9 9 324:>KF790145,A/Arkansas/13/2013(H3N2) 325 >KF789868,A/Arkansas/03/2013(H3N2) .......................A...T..........C........A....................G..T.......G...A.A............................................................................... 9 9 , 9 9 325:>KF789868,A/Arkansas/03/2013(H3N2) 326 >KF790181,A/Alaska/23/2012(H3N2) .......................A..............C........C..............A.....G..........G...A................................................................................. 7 7 , 7 7 326:>KF790181,A/Alaska/23/2012(H3N2) 327 >KF789800,A/Alaska/31/2012(H3N2) .......................A..............C........C..............A.....G..........G...A................................................................................. 7 7 , 7 7 327:>KF789800,A/Alaska/31/2012(H3N2) 328 >KF789581,A/North Dakota/07/2012(H3N2) .......................A..............C........C..............A.....G..........G...A...............................A................................................. 8 8 , 8 8 328:>KF789581,A/North Dakota/07/2012(H3N2) 329 >KF789880,A/Arkansas/05/2012(H3N2) .......................A..............C........C..............A...T............G...A..............A..................A............................................... 9 9 , 9 9 329:>KF789880,A/Arkansas/05/2012(H3N2) 330 >KF790089,A/Hawaii/27/2012(H3N2) .......................A..............C........C..............A.....G..........G...A..........................C...................................................... 8 8 , 8 8 330:>KF790089,A/Hawaii/27/2012(H3N2) 331 >KF790091,A/Hawaii/27/2012(H3N2) .......................A..............C........C..............A.....G..........G...A..........................C...................................................... 8 8 , 8 8 331:>KF790091,A/Hawaii/27/2012(H3N2) 332 >KF790231,A/Alaska/24/2012(H3N2) .......................A..............C........C..............A.G...G..........G...A................................................................................. 8 8 , 8 8 332:>KF790231,A/Alaska/24/2012(H3N2) 333 >KF790369,A/Alaska/24/2012(H3N2) .......................A..............C........C..............A.G...G..........G...A................................................................................. 8 8 , 8 8 333:>KF790369,A/Alaska/24/2012(H3N2) 334 >KF790203,A/Alaska/22/2012(H3N2) .......................A..............C........C.....A........A.....G..........G...A................................................................................. 8 8 , 8 8 334:>KF790203,A/Alaska/22/2012(H3N2) 335 >KF790165,A/Alaska/22/2012(H3N2) .......................A..............C........C.....A........A.....G..........G...A................................................................................. 8 8 , 8 8 335:>KF790165,A/Alaska/22/2012(H3N2) 336 >KF790204,A/Alaska/23/2012(H3N2) .......................A..............C........C..............A.....G..........G...A................................................................................. 7 7 , 7 7 336:>KF790204,A/Alaska/23/2012(H3N2) 337 >KF790143,A/Texas/14/2013(H3N2) .....G..................A.............C.............................G..........G...A.........G...............................T....A...........G...................... 10 10 , 10 10 337:>KF790143,A/Texas/14/2013(H3N2) 338 >KF789852,A/Massachusetts/12/2013(H3N2) .....G..................A.............C.............................G..........G...A........GG..............................AT....A...........G...................... 12 12 , 12 12 338:>KF789852,A/Massachusetts/12/2013(H3N2) 339 >KF790298,A/Massachusetts/13/2013(H3N2) .....G.....A............A.............C.............................G..........G...A.........G...............................T....A...........G...................... 11 11 , 11 11 339:>KF790298,A/Massachusetts/13/2013(H3N2) 340 >KF790355,A/Missouri/05/2013(H3N2) .....G..................A.............C.............................G..........G...A...C.....G...............................T....A.................................. 10 10 , 10 10 340:>KF790355,A/Missouri/05/2013(H3N2) 341 >KF789862,A/Florida/21/2013(H3N2) .....G..................A.............C.............................G..........G...A...C.....G...............................T....A.................................. 10 10 , 10 10 341:>KF789862,A/Florida/21/2013(H3N2) 342 >KF790400,A/New York/61/2012(H3N2) .........A............................C.......G.....................G..........G...A................................................................................. 6 6 , 6 6 342:>KF790400,A/New York/61/2012(H3N2) ---Index----------------------------------------------------CTAGTAAGACTGCACAAACCTATGGTTGGCACTCTGTATTCTACGGATGGGCTGCATCCATGGTATGGAGGCCGCGTAGAGATGTGTTGCTATAAGGGGGCGGTTGGAGGTTCGTGGGGGCCGTGCGATAGCGTTCGTATGACCACCAACCAAGAAAAGGCCCTG -codon-position--------------------------------------------- 11 2 12 1 2 21 1 1 2 1 1 12 1 1 1 2 1 1 21 11211 121111112 1 121 12 11 11 11 1212121 000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000 000000000001111111111111111112222222222222222333333333333333344444444444444444444555555555555555566666666666666667777777777777777777888888888888888888888899999999999 334444568990012455666778888890144455666779999000112233555899900112234556777888899012224444556789900000112233457781223455666667788899022334444445556677888911234555677 690358197392812409378570356957606958147361357369254803124108928140681698147037926141580136254321403469281502222851035468023675801203839890346780593714256829530026749
Leave a comment:
-
Re: H3n2
HAs from India, summer 2013, have nucleotide mutations:
A430G,A472G,(T518C),G1087A,G1080A
giving amino-acid mutations T144A,R158G,(L173S),V363K
Code:000000000000000000000000000000000000000000000000000000000000000000000111111111111111111111111111 000000111111222222223333444444444555555556666666667777778888889999999000000111112233444555555556 034577048999012344891122135778888012445690011468891223693378891225678004588338995945124001244677 998202862016598203516838906280234182369546925002705696590732735344653597378015574643683798458081 -codon-position----------------------------------------------------- 11 221211 1 1 2121 11 2 1 2 11 1 1 1 1 12 22 2 2 1 122 1 1 ---Index------------------------------------------------------------TGTAACAAGACGGGTGCACTCCATGACAATACAGTACGAATTGCTGCAACGCCAGCGGCTATCAACCTAGCCCGTTAGAGCCGTGGTGCAAGCCAA 1 >Index/USA-2007 ................................................................................................ 0 0 , 0 0 1:>Index/USA-2007 2 >Index/Perth-like/2009 ...............A.............A.....C...C....A.......T......................G...A.T..........TAG. 12 12 , 12 12 2:>Index/Perth-like/2009 3 >Index/2009/Egypt/Iowa .....................A.........T...C...C....G.AG....T................A..A..G...A.T...........AG. 15 15 , 15 15 3:>Index/2009/Egypt/Iowa 4 >Index/H3N3-2011-reassortedEI/2011(H3N2) ......G.....A......C.A.C.......T...C...C....G.AG.T..TG......C........AA.A..GG..A.T.C.....G.A.AG. 27 27 , 27 27 4:>Index/H3N3-2011-reassortedEI/2011(H3N2) 5 >Index/H3N2-2011-normalEI/2011(H3N2) C........G...T.......AG........T...C...C....G.AG....T...............GA..AA.G.A.A.T...........AG. 22 22 , 22 22 5:>Index/H3N2-2011-normalEI/2011(H3N2) 6 >Index/2009/Egypt-Iowa+NA,2009// .....................A.........T...C...C....G.AG....T................A..A..G...A.T...........AG. 15 15 , 15 15 6:>Index/2009/Egypt-Iowa+NA,2009// 7 >A/Czech Republic/121/2012,2012/03/06,Czech Republic .....T.GA.TA..C......A..A.T....T.A.C..GC....GTAG..ATT......G........GA..A..G..CAAT...........AGG 33 33 , 33 33 7:>A/Czech Republic/121/2012,2012/03/06,Czech Republic 8 >Index/32g12f1.c2,10-37 .....T.GA.T.....T.T..A....T...GT.A.C...C....GTAG..A.T.A....G..A.....GA..A..G..CAAT........G..AGG 34 34 , 34 34 8:>Index/32g12f1.c2,10-37 9 >Index/32g12f1.c2,38-41 .....T.GA.T..A...GT..A..A.T...GT.A.C...C.CA.GTAG..A.T......G...G....GA..A..G..CAAT.......GG..AGG 38 38 , 38 38 9:>Index/32g12f1.c2,38-41 10 >Index/32g12f1.c2,42-53 .AC..................A......G.GT...C...C....G.ATG.A.T...A.A.......T..A..A..G...A.TA.AACA.....AG. 29 29 , 29 29 10:>Index/32g12f1.c2,42-53 11 >Index/32g12f1.c2,55-62 CA.GG.GG....A......CAA.C.......T...C...C....G.A..T..TGA..A..C......C.AATA..GG..A.T.C....TG.A.AG. 37 37 , 37 37 11:>Index/32g12f1.c2,55-62 12 >KF668185,A/India/LKO799/2011,2011/07/16,India,H3N2,Human,4 ------------------------......GT...C...C....GTAG..A.T...............GA..A..--------------------- 58 58 , 13 13 12:>KF668185,A/India/LKO799/2011,2011/07/16,India,H3N2,Human,4 13 >KF668186,A/India/LKO827/2011,2011/07/25,India,H3N2,Human,4 -------------------------.....GT...CT..CC...GTAG..A.T........C......GA..A----------------------- 64 64 , 16 16 13:>KF668186,A/India/LKO827/2011,2011/07/25,India,H3N2,Human,4 14 >KF668187,A/India/LKO845/2011,2011/07/26,India,H3N2,Human,4 ------------------------......GT...C...C....GTAG..A.T...............GA..A----------------------- 60 60 , 13 13 14:>KF668187,A/India/LKO845/2011,2011/07/26,India,H3N2,Human,4 15 >KF668188,A/India/LKO851/2011,2011/07/27,India,H3N2,Human,4 ------------------------......GT...C...C....GTAG..A.T...............GA..A----------------------- 60 60 , 13 13 15:>KF668188,A/India/LKO851/2011,2011/07/27,India,H3N2,Human,4 16 >KF668189,A/India/LKO856/2011,2011/07/28,India,H3N2,Human,4 ------------------------......GT...C...C....GTAG..A.T...............GA..A..--------------------- 58 58 , 13 13 16:>KF668189,A/India/LKO856/2011,2011/07/28,India,H3N2,Human,4 17 >KF668190,A/India/LKO871/2011,2011/07/29,India,H3N2,Human,4 ------------------------......GT...C...C....GTAG..A.T...............GA..A----------------------- 60 60 , 13 13 17:>KF668190,A/India/LKO871/2011,2011/07/29,India,H3N2,Human,4 18 >KF668191,A/India/LKO896/2011,2011/08/03,India,H3N2,Human,4 ------------------------......GT...C...C....GTAG..A.T...A...........GA..A----------------------- 61 61 , 14 14 18:>KF668191,A/India/LKO896/2011,2011/08/03,India,H3N2,Human,4 19 >KF668192,A/India/LKO983/2011,2011/08/25,India,H3N2,Human,4 ------------------------......GT...C...C....GTAG..A.T...............GA..A----------------------- 60 60 , 13 13 19:>KF668192,A/India/LKO983/2011,2011/08/25,India,H3N2,Human,4 20 >KF668193,A/India/LKO1442/2012,2012/01/23,India,H3N2,Human,4 ------------------------......GT...C...C....GTAG..A.T...............GA..A..--------------------- 58 58 , 13 13 20:>KF668193,A/India/LKO1442/2012,2012/01/23,India,H3N2,Human,4 21 >KF668194,A/India/LKO1501/2012,2012/02/14,India,H3N2,Human,4 ------------------------......GT...C...C....GTAG..A.T...............GA..A----------------------- 60 60 , 13 13 21:>KF668194,A/India/LKO1501/2012,2012/02/14,India,H3N2,Human,4 22 >KF668195,A/India/LKO3108/2012,2012/12/12,India,H3N2,Human,4 ------------------------......GT...C...C....GTAG..A.T...............GA..A..--------------------- 58 58 , 13 13 22:>KF668195,A/India/LKO3108/2012,2012/12/12,India,H3N2,Human,4 23 >KF668196,A/India/LKO3818/2013,2013/06/25,India,H3N2,Human,4 -------------------------GTG..GT.A.C.A.C....GTAG..A.T......G........GA..A----------------------- 67 67 , 19 19 23:>KF668196,A/India/LKO3818/2013,2013/06/25,India,H3N2,Human,4 24 >KF668197,A/India/LKO3824/2013,2013/06/26,India,H3N2,Human,4 ------------------------.GTG..GT.ACCT..C....GTAG..A.T......G....G...GA..A----------------------- 68 68 , 21 21 24:>KF668197,A/India/LKO3824/2013,2013/06/26,India,H3N2,Human,4 25 >KF668198,A/India/LKO3825/2013,2013/06/26,India,H3N2,Human,4 ------------------------.GTG..GT.ACC...C....GTAG..A.T......G........GA..A----------------------- 66 66 , 19 19 25:>KF668198,A/India/LKO3825/2013,2013/06/26,India,H3N2,Human,4 26 >KF668199,A/India/LKO3839/2013,2013/06/29,India,H3N2,Human,4 ------------------------.GTG..GT.ACC...C....GTAG..A.T......G........GA..A----------------------- 66 66 , 19 19 26:>KF668199,A/India/LKO3839/2013,2013/06/29,India,H3N2,Human,4 27 >KF668200,A/India/LKO3863/2013,2013/07/06,India,H3N2,Human,4 --------------------------TG..GT.A.C...C....GTAG..A.T......G........GA..A----------------------- 66 66 , 17 17 27:>KF668200,A/India/LKO3863/2013,2013/07/06,India,H3N2,Human,4 28 >KF668201,A/India/LKO3876/2013,2013/07/09,India,H3N2,Human,4 -------------------------GTG..GTGACC...C....GTAG..A.T......G........GA..A----------------------- 68 68 , 20 20 28:>KF668201,A/India/LKO3876/2013,2013/07/09,India,H3N2,Human,4 29 >KF668202,A/India/LKO3887/2013,2013/07/10,India,H3N2,Human,4 --------------------------TG..GT.A.C...C....GTAG..A.T......G.....T..GA..AAA--------------------- 67 67 , 20 20 29:>KF668202,A/India/LKO3887/2013,2013/07/10,India,H3N2,Human,4 30 >KF668203,A/India/LKO3889/2013,2013/07/11,India,H3N2,Human,4 -------------------------GTG..GT.ACC...C....GTAG..A.T......G........GA..A----------------------- 67 67 , 19 19 30:>KF668203,A/India/LKO3889/2013,2013/07/11,India,H3N2,Human,4 31 >KF668204,A/India/LKO3893/2013,2013/07/12,India,H3N2,Human,4 -------------------------GTG..GT.A.C...C...TGTAG..A.T......G.....T..GA..A----------------------- 68 68 , 20 20 31:>KF668204,A/India/LKO3893/2013,2013/07/12,India,H3N2,Human,4 32 >KF668205,A/India/LKO3906/2013,2013/07/15,India,H3N2,Human,4 --------------------------TG..GT.ACC...C....GTAG..A.T......G........GA..AAA--------------------- 67 67 , 20 20 32:>KF668205,A/India/LKO3906/2013,2013/07/15,India,H3N2,Human,4 33 >KF668206,A/India/LKO3913/2013,2013/07/16,India,H3N2,Human,4 ------------------------.GTG..GT.A.C...C....GTAG..A.T......G........GA..AAA--------------------- 65 65 , 20 20 33:>KF668206,A/India/LKO3913/2013,2013/07/16,India,H3N2,Human,4 34 >KF668207,A/India/LKO3914/2013,2013/07/16,India,H3N2,Human,4 ------------------------.GTG..GT.A.C...C....GTAG..A.T..T...G........GA..AAA--------------------- 66 66 , 21 21 34:>KF668207,A/India/LKO3914/2013,2013/07/16,India,H3N2,Human,4 ---Index------------------------------------------------------------TGTAACAAGACGGGTGCACTCCATGACAATACAGTACGAATTGCTGCAACGCCAGCGGCTATCAACCTAGCCCGTTAGAGCCGTGGTGCAAGCCAA -codon-position----------------------------------------------------- 11 221211 1 1 2121 11 2 1 2 11 1 1 1 1 12 22 2 2 1 122 1 1 000000000000000000000000000000000000000000000000000000000000000000000111111111111111111111111111 000000111111222222223333444444444555555556666666667777778888889999999000000111112233444555555556 034577048999012344891122135778888012445690011468891223693378891225678004588338995945124001244677 998202862016598203516838906280234182369546925002705696590732735344653597378015574643683798458081
NA has mutations A464T,A752T,A943G,
Code:00000000000000000000000000000000000000000000000000011111111111111111111111111 00000112222223344444444445555666667777788888999999900000000111111111111222223 02778160467780922335567780199046661135723799033344401244689000112555899047899 65785954273880969591941295915933692422487618368923535947205067365568519472100 -codon-position----------------------------------------------------- 12 12 2 2 11 2 1 1 1 1 1 2 1 2 1 11 22 1 212 1 ---Index------------------------------------------------------------TATTTAAGTGAAATCCGAGGCACCACATATAACCAAGAGGCACACTTTCATAGAAGTGGGAGCAACCTAAGAGGAAA 1 >Index/USA-2007 ............................................................................. 0 0 , 0 0 1:>Index/USA-2007 2 >Index/Perth-like/2009 ............G...A.A...........G...........A..........GG...................... 7 7 , 7 7 2:>Index/Perth-like/2009 3 >Index/2009/Egypt/Iowa ..CCCG............A...T.......G..............................A.............G. 9 9 , 9 9 3:>Index/2009/Egypt/Iowa 4 >Index/H3N3-2011-reassortedEI/2011(H3N2) ..................A...........G.........T..................AC.T...........T.C 8 8 , 8 8 4:>Index/H3N3-2011-reassortedEI/2011(H3N2) 5 >Index/H3N2-2011-normalEI/2011(H3N2) ......G..A........A..........AG.T...A...T....A............AAC..G......A...T.C 16 16 , 16 16 5:>Index/H3N2-2011-normalEI/2011(H3N2) 6 >Index/2009/Egypt-Iowa+NA,2009// ..................A...........G.........T..................AC.............T.C 7 7 , 7 7 6:>Index/2009/Egypt-Iowa+NA,2009// 7 >A/Czech Republic/121/2012,2012/03/06,Czech Republic .T......CA.G.C....A...T.G.....G.T...A..AT.................AAC..........G..T.C 19 19 , 19 19 7:>A/Czech Republic/121/2012,2012/03/06,Czech Republic 8 >Index/32g12f1.c2,10-37 ........CA.G.C....A...T.G.....G.T...A..AT..C..............AAC....T.....G.AT.C 21 21 , 21 21 8:>Index/32g12f1.c2,10-37 9 >Index/32g12f1.c2,38-41 ........CA.G.C....A...T.G..G..G.T...A..AT..C..............AAC..........G..T.C 20 20 , 20 20 9:>Index/32g12f1.c2,38-41 10 >Index/32g12f1.c2,42-53 C......A..........A.T.....G...GC..GG....T..........G...A...AC......G....A.TGC 19 19 , 19 19 10:>Index/32g12f1.c2,42-53 11 >Index/32g12f1.c2,55-62 .......AC.G...T...A...........G.........T...T.....G.....C..AC.T.....G..G..T.C 17 17 , 17 17 11:>Index/32g12f1.c2,55-62 12 >KF668208,A/India/LKO799/2011,2011/07/16,India,H3N2,Human,6 --------------.T..A...TT......G.T...A...T.T....C..........AAC........G.G----- 34 34 , 15 15 12:>KF668208,A/India/LKO799/2011,2011/07/16,India,H3N2,Human,6 13 >KF668209,A/India/LKO827/2011,2011/07/25,India,H3N2,Human,6 ---------------T..A...TT......G.T...A...T.T....C..........AAC........-------- 36 36 , 13 13 13:>KF668209,A/India/LKO827/2011,2011/07/25,India,H3N2,Human,6 14 >KF668210,A/India/LKO845/2011,2011/07/26,India,H3N2,Human,6 --------------.T..A...TT......G.T...A...T.T....C..........AAC........G.G----- 34 34 , 15 15 14:>KF668210,A/India/LKO845/2011,2011/07/26,India,H3N2,Human,6 15 >KF668211,A/India/LKO851/2011,2011/07/27,India,H3N2,Human,6 --------------.T..A...TT......G.T...A...T......C..........AAC..........G.---- 31 31 , 13 13 15:>KF668211,A/India/LKO851/2011,2011/07/27,India,H3N2,Human,6 16 >KF668212,A/India/LKO856/2011,2011/07/28,India,H3N2,Human,6 --------------.T..A...TT......G.T...A.A.T......C..........AAC........-------- 35 35 , 13 13 16:>KF668212,A/India/LKO856/2011,2011/07/28,India,H3N2,Human,6 17 >KF668213,A/India/LKO864/2011,2011/07/28,India,H3N2,Human,6 ---------------T..A...TT......G.T...A...T......C..........AAC..........G----- 33 33 , 13 13 17:>KF668213,A/India/LKO864/2011,2011/07/28,India,H3N2,Human,6 18 >KF668214,A/India/LKO871/2011,2011/07/29,India,H3N2,Human,6 ---------------T..A...TT......G.T...A...T.T....C..........AAC........-------- 36 36 , 13 13 18:>KF668214,A/India/LKO871/2011,2011/07/29,India,H3N2,Human,6 19 >KF668215,A/India/LKO896/2011,2011/08/03,India,H3N2,Human,6 --------------.T..A...TT......G.T...A...T.T....C..........AAC........G.G----- 34 34 , 15 15 19:>KF668215,A/India/LKO896/2011,2011/08/03,India,H3N2,Human,6 20 >KF668216,A/India/LKO940/2011,2011/08/11,India,H3N2,Human,6 ----------------..A...TT......G.T...A...T.T....C..........AAC........-------- 36 36 , 12 12 20:>KF668216,A/India/LKO940/2011,2011/08/11,India,H3N2,Human,6 21 >KF668217,A/India/LKO983/2011,2011/08/25,India,H3N2,Human,6 --------------.T..A...TT......G.T...A...T......C..........AAC........G.G----- 33 33 , 14 14 21:>KF668217,A/India/LKO983/2011,2011/08/25,India,H3N2,Human,6 22 >KF668218,A/India/LKO1442/2012,2012/01/23,India,H3N2,Human,6 ---------------T..A...TT......G.T...A...T.T....C..........AAC........-------- 36 36 , 13 13 22:>KF668218,A/India/LKO1442/2012,2012/01/23,India,H3N2,Human,6 23 >KF668219,A/India/LKO1501/2012,2012/02/14,India,H3N2,Human,6 ------------------A...TT......G.T...A...T.T....C..........AAC........-------- 38 38 , 12 12 23:>KF668219,A/India/LKO1501/2012,2012/02/14,India,H3N2,Human,6 24 >KF668220,A/India/LKO3108/2012,2012/12/12,India,H3N2,Human,6 ----------------.GAR..TT......G.T...A...T.T....C..........AAC........G.G----- 37 37 , 16 16 24:>KF668220,A/India/LKO3108/2012,2012/12/12,India,H3N2,Human,6 25 >KF668221,A/India/LKO3818/2013,2013/06/25,India,H3N2,Human,6 -------------------..TTT.T....G.T...AT..T......C.G........AAC..........G----- 39 39 , 15 15 25:>KF668221,A/India/LKO3818/2013,2013/06/25,India,H3N2,Human,6 26 >KF668222,A/India/LKO3824/2013,2013/06/26,India,H3N2,Human,6 ----------------------TT.T....G.T...AT..T......C.G........AAC..........G----- 41 41 , 14 14 26:>KF668222,A/India/LKO3824/2013,2013/06/26,India,H3N2,Human,6 27 >KF668223,A/India/LKO3825/2013,2013/06/26,India,H3N2,Human,6 --------------.T..A..TTT....G.G.T...AT..T......C.G........AAC..........G----- 36 36 , 17 17 27:>KF668223,A/India/LKO3825/2013,2013/06/26,India,H3N2,Human,6 28 >KF668224,A/India/LKO3839/2013,2013/06/29,India,H3N2,Human,6 --------------.T..A..TTT......G.T...AT..T......C.G........AAC...G......G----- 36 36 , 17 17 28:>KF668224,A/India/LKO3839/2013,2013/06/29,India,H3N2,Human,6 29 >KF668225,A/India/LKO3863/2013,2013/07/06,India,H3N2,Human,6 ---------------T..A..TTT......G.T...AT..T.....CC..........AAC..........G----- 36 36 , 16 16 29:>KF668225,A/India/LKO3863/2013,2013/07/06,India,H3N2,Human,6 30 >KF668226,A/India/LKO3876/2013,2013/07/09,India,H3N2,Human,6 ---------------T..A..TTT......G.T...AT..T......C.G........AAC..........G----- 36 36 , 16 16 30:>KF668226,A/India/LKO3876/2013,2013/07/09,India,H3N2,Human,6 31 >KF668227,A/India/LKO3887/2013,2013/07/10,India,H3N2,Human,6 --------------.T..A..TTT......G.TA..AT..T......C.G.......AAAC..........G----- 37 37 , 18 18 31:>KF668227,A/India/LKO3887/2013,2013/07/10,India,H3N2,Human,6 32 >KF668228,A/India/LKO3889/2013,2013/07/11,India,H3N2,Human,6 --------------.T..A..TTT......G.T...AT..TG.....C.G........AAC.....T....G----- 37 37 , 18 18 32:>KF668228,A/India/LKO3889/2013,2013/07/11,India,H3N2,Human,6 33 >KF668229,A/India/LKO3893/2013,2013/07/12,India,H3N2,Human,6 ----------------..A..TTT......G.T...AT..T......CAG..A.....AAC.........------- 39 39 , 16 16 33:>KF668229,A/India/LKO3893/2013,2013/07/12,India,H3N2,Human,6 34 >KF668230,A/India/LKO3906/2013,2013/07/15,India,H3N2,Human,6 ----------------..A..TTT......G.T...AT..T......C.G..A.....AAC..........G----- 37 37 , 16 16 34:>KF668230,A/India/LKO3906/2013,2013/07/15,India,H3N2,Human,6 35 >KF668231,A/India/LKO3913/2013,2013/07/16,India,H3N2,Human,6 ---------------T..A..TTT......G.T...AT..T......C.G........AAC..........G----- 36 36 , 16 16 35:>KF668231,A/India/LKO3913/2013,2013/07/16,India,H3N2,Human,6 36 >KF668232,A/India/LKO3914/2013,2013/07/16,India,H3N2,Human,6 -------------------..TTT......G.T...AT..T......C.G........AAC..........G----- 38 38 , 14 14 36:>KF668232,A/India/LKO3914/2013,2013/07/16,India,H3N2,Human,6 ---Index------------------------------------------------------------TATTTAAGTGAAATCCGAGGCACCACATATAACCAAGAGGCACACTTTCATAGAAGTGGGAGCAACCTAAGAGGAAA -codon-position----------------------------------------------------- 12 12 2 2 11 2 1 1 1 1 1 2 1 2 1 11 22 1 212 1 00000000000000000000000000000000000000000000000000011111111111111111111111111 00000112222223344444444445555666667777788888999999900000000111111111111222223 02778160467780922335567780199046661135723799033344401244689000112555899047899 65785954273880969591941295915933692422487618368923535947205067365568519472100
Leave a comment:
-
-
Re: H3n2
HA and NA from Japan,Hokkaido,2013 have been published.
It is very similar to the Texas genomes from Nov.
e.g. JMM_22
Leave a comment:
-
Re: H3n2
so, do the sequences give us hints, why this season was so bad in USA ?
Not really. I'm not sure.
And we have a severe season in Europe too, but with other strains.
-----------------------------------------------------------------------------------------------
the first appearance of the Czech/121 strain "1.)" , 28 out of 53 in Texas
and 75 out of 82 in Canada, was in many Singapore isolates from mid 2011
first: A/Singapore/TT430/2011/07/29
--------------------------------------------------------------------------------------------------------
the first appearance of the additional HA-mutations that are in the new reassorted
strain "2.)", in 4 out of 53 recent Texas genomes
- -not seen before
---------------------------------------------------------------------------------------------------------------
the first appearance of the new 3.) strain ,12 out of 53 in Texas, was in
A/Pavia/131/2012/02/21
A/St.Petersburg/RII25/2012/02/23
A/Ekaterinburg/RII3/2012/02/29
------------------------------------------------------------------------------------------------------------------
the first appearance of that "reassorted-2011" strain, "2.)", now seen in 8 out of 53 of the
Texas-JMM-genomes and in 7 out of 82 recent HAs from Canada
was in A/Pennsylvania/02/2010/02/21 , which is now public.
It was passaged 2010/02/21, but colleced 2010/01/07.
H3N2 was very rare in 2009/2010, but indeed there was
one H3 from week 2 in region 3:
And this sequence had been mentioned on the web already in Sept.2010.
2010 is surprisingly early for that new strain, which was one of the dominating H3 strains
the season later, and surprising is also that it first appeared in USA.
It would be interesting to see the travel history of that 74 year old male
from Pennsylvania. Was he in Asia over Christmas ? Maybe that was the reason why he
was sampled in the first place.
The next appearance was in Netherlands,April,2010.
------------------------------------------------------------------------------------------------------------------
Leave a comment:
-
Re: H3n2
lots of new sequences today at genbank
here are all human H3N2s since Sept.2012
you can immediately spot one reassortment at the 2 black bars on the right,
where the sequences are similar in HA but different in MP,PB2,PA
--------well, that's the old reassortment from 2011, both are still there and evolved in the meantime.
53 full genomes from Texas ("JMM") , 4 groups and 2-3 minor overlaps by exchanging(reassorting) segments
1.) 28 of them are similar to the Czech/121 virus from last season
4.) 8 of them are the 2011-reassorted virus
3.) 12 of them are a strain, that I don't know yet where it comes from, different from the other
3 strains circulating in Texas, but probably still a descendent from Egypt/Iowa/2009
2.) 4 are reassorted, getting segments 24568 from group 1.) and 137 from an ancester of group 3.)
Leave a comment:
-
Re: H3n2
rooted to Egypt/Iowa:
(looks as if I should redefine the 2011-normal-index ?!)
Leave a comment:
-
Re: H3n2
H3 in Denmark had seven mutations at key antigenic sites
In Denmark, the 2012/13 influenza season has been dominated by influenza A(H3N2). We estimated the vaccine effectiveness (VE) of the trivalent influenza vaccine by linking national registers in a test-negative case-control study of patients tested for influenza aged ≥65 years. The adjusted VE against laboratory-confirmed influenza A and B was -11% (95% CI: -41 to 14) and 69% (95% CI: 26 to 87), respectively. Genetic characterisation of the influenza A(H3N2) viruses indicated genetic drift, with seven substitutions at key antigenic sites. .
Based on HA amino acid sequence analysis, the Danish A(H3N2) viruses formed two main clades,
A and B (Figure 2).
Clade B is within the defined 3C A(H3) phylogenetic clade, where the 2012/13 A(H3N2)
vaccine component (A/Victoria/361/2011) is assigned,
but the Danish clade A should probably be assigned a new A(H3) clade. Five of the 22
Danish HA sequences included in the phylogenetic analysis, collected from week 46
(11 December 2012) to week 1 (2 January 2013), were from patients who had been
vaccinated before week 47: all five were located in clade A (Figure 2).
Altogether, seven amino acid substitutions in the HA defined the Danish clade A,
compared with egg-grown/tissue grown A/Victoria/361/2011 –
T128A, R/Q156H,V186G;R142G,N145S;N278K;S/Y219S.
Additional substitutions were Q33R, E/D190D and V347M.
The clade B viruses did not possess the substitutions at positions 128, 142 and 347.
The clade A viruses have lost the 126 N-linked glycosylation seen in A/Victoria/361/2011
and clade B (predicted by NetNGlyc 1.0 server [7]. For comparison, we included reference
HA sequences from influenza A(H3) viruses, obtained from the EpiFlu database of the
Global Initiative on Sharing Avian Influenza Data (GISAID) (Table 3).
=================================================0
DK-A = Quebec (Q49R,S61N,T64I,T144A,R158G,N161S,A214S,V239I,N294 K,N328S,V363M)
DK-B = Alberta (Q49R,S61N,T64I,N161S,A214S,V239I,N294K,N328S)
[as compared to Egypt/Iowa/2009]
while the vax-strain A/Victoria/361/2011 seems to have the additional mutations
H172RorQ,G202V,S235SorY,D190EorD
---------------------------------------------------------
6 H3-HAs from USA today at genbank
5 (3CA+2IL) are DK-B=ALB
1 (CA) is DK-A = Quebec
---------------------------------------------------------------
Leave a comment:
-
Re: H3n2
82 H3N2-HAs from Canada, this season, today at genbank
(segment 4 only)
I count ~4(10) different introductions
82=7+32+11+32=7+(6+6+4+16)+(9+2)+(22+8+2)
7 are from the reassorted strain 2011-reassorted-EI, index2-2011
the other 75 are similar to CZ121 in HA, "index3-2011"
Code:000000000000000000000000000000000000000000000000000000111111111111111111111111111111111 000111111111222222222333444444555566666667777788889999000000001111222222333334555555666 357023466889001446789224123578019900244990113625880188001134580139145699235671112347167 952802625021589077651185900622181439203035456594273537591487671315554936383716384057321 -codon-position------------------------------------ 1 2 2211 1 1 2 1 12 2 111 11 12 2 2 1 1 1 2 1 22 ---Index-------------------------------------------GCCAGAATTGGCGAGCACTCTCTTGCACAAGTGTGGAGTCGTAGAGCGTATCATACATCCGGCTAACCCGCTGCTCCGGAAAGGTCA 1 >Index/2009/Egypt/Iowa ....................................................................................... 0 0 , 0 0 1:>Index/2009/Egypt/Iowa 2 >Index/H3N3-2011-reassortedEI/2011(H3N2) ...G........A.......C.C................T....G....C.....A........G.........C....G..A.... 12 12 , 12 12 2:>Index/H3N3-2011-reassortedEI/2011(H3N2) 3 >Index/H3N2-2011-normalEI/2011(H3N2) ..............T.....................................G........A......................... 7 3 , 7 3 3:>Index/H3N2-2011-normalEI/2011(H3N2) 4 >KC526210,A/Ontario/004/2013(H3N2) ...G.G...A..A.......C.CC........A.....GT.CG.G....CC....A....T.T.G.........C.T..G..A.C.. 24 24 , 24 24 4:>KC526210,A/Ontario/004/2013(H3N2) 5 >KC535039,A/Quebec/016/2012(H3N2) ...G.G...A..A.......C.CC........A....AGT.CG.G....CC....A....T.T.G.......--------------- 38 35 , 20 20 5:>KC535039,A/Quebec/016/2012(H3N2) 6 >KC535052,A/Quebec/030/2012(H3N2) ...G.G...A..A.......C.CC........A....AGT.CG.G....CC....A....T.T.G........-------------- 38 34 , 21 20 6:>KC535052,A/Quebec/030/2012(H3N2) 7 >KC535043,A/Quebec/020/2012(H3N2) ...G.G...A..A.......C.CC........A.....GT.CG.G....CC....A....T.T.G.......--------------- 38 34 , 20 19 7:>KC535043,A/Quebec/020/2012(H3N2) 8 >KC535060,A/Quebec/039/2012(H3N2) ...G.G...A..A.......C.CC........A.....GT.CG.G....CC....A....T.T.G........-------------- 37 33 , 20 19 8:>KC535060,A/Quebec/039/2012(H3N2) 9 >KC539120,A/Alberta/054/2012(H3N2) ...G.....A..A.......C.CC........A.....GT.CG.G....CC....A....T.T.G.........CYT..G..A.C.. 26 24 , 25 24 9:>KC539120,A/Alberta/054/2012(H3N2) 10 >KC535055,A/Quebec/034/2012(H3N2) ...G.G...A..A.......C.CC........A....AGT.CG.G....CC....A....T.T.G.....----------------- 43 37 , 22 20 10:>KC535055,A/Quebec/034/2012(H3N2) 11 >KC539119,A/Alberta/053/2012(H3N2) ..T...G...AT.....T.........T..A......T.....A....G...G............C..A........A.....A..G 16 16 , 16 16 11:>KC539119,A/Alberta/053/2012(H3N2) 12 >KC539134,A/Alberta/068/2012(H3N2) ..T...G...AT.....T.........T..A..C...T.....A....G...G............C..A........A.....A..G 17 17 , 17 17 12:>KC539134,A/Alberta/068/2012(H3N2) 13 >KC535022,A/British Columbia/023/2012(H3N2) A.T...G...AT...............T..AC.....T.....A....G.C.G......T.A.C.C.TA...--------------- 37 34 , 19 19 13:>KC535022,A/British Columbia/023/2012(H3N2) 14 >KC535045,A/Quebec/022/2012(H3N2) A.T...G...AT...............T..AC.....T.....A....G.C.G......T.A.C.C.TA...--------------- 37 34 , 19 19 14:>KC535045,A/Quebec/022/2012(H3N2) 15 >KC535046,A/Quebec/023/2012(H3N2) A.T...G...AT...............T..AC.....T.....A....G.C.G......T.A.C.C.TA...--------------- 38 34 , 20 19 15:>KC535046,A/Quebec/023/2012(H3N2) 16 >KC535042,A/Quebec/019/2012(H3N2) A.T...G...AT...............T..AC.....T.....A....G...G......T.A.C.C.TA.----------------- 40 35 , 20 18 16:>KC535042,A/Quebec/019/2012(H3N2) 17 >KC526204,A/Ontario/030/2012(H3N2) ..T...G.C.AT......CT.......T.GA......T..A..A....G...G...G..T.....C..AA........AGG....AG 25 25 , 25 25 17:>KC526204,A/Ontario/030/2012(H3N2) 18 >KC526209,A/Ontario/003/2013(H3N2) ..T...G.C.AT......CT.......T.GA......T..A..A....G...G...G..T.....C..AA........AGG..---- 29 27 , 23 23 18:>KC526209,A/Ontario/003/2013(H3N2) 19 >KC526212,A/Ontario/006/2013(H3N2) ..T...G.C.AT......CT.......T.GA......T..A..A....G...G...G..T.....C..AA........AGG....AG 25 25 , 25 25 19:>KC526212,A/Ontario/006/2013(H3N2) 20 >KC535044,A/Quebec/021/2012(H3N2) ..T...G.C.AT......CT.......T.GA......T..A..A....G...G...G..T.....C..AA..--------------- 38 35 , 20 20 20:>KC535044,A/Quebec/021/2012(H3N2) 21 >KC535030,A/British Columbia/005/2013(H3N2) ..T...G.C.AT......CT.......T.GA......T..A..A....G...G...G..T.....C..AA...-------------- 38 34 , 21 20 21:>KC535030,A/British Columbia/005/2013(H3N2) 22 >KC526208,A/Ontario/002/2013(H3N2) ..T...G.C.AT......CT.......T.GA......T..A..A....G...G...G..T.....C..AA..........G.....G 23 22 , 23 22 22:>KC526208,A/Ontario/002/2013(H3N2) 23 >KC535027,A/British Columbia/002/2013(H3N2) ..T...G...AT.......T.......T.GA.A....T..A..A....G...G............C..A...--------------- 35 31 , 17 16 23:>KC535027,A/British Columbia/002/2013(H3N2) 24 >KC535049,A/Quebec/026/2012(H3N2) ..T...G...AT.......T.......T.GA...A..T..A..A....G...G.......A....C..A...--------------- 37 32 , 19 17 24:>KC535049,A/Quebec/026/2012(H3N2) 25 >KC526207,A/Ontario/001/2013(H3N2) ..T...G...AT.......T.......T.GA......T.....A....G...G............C..A..........GG.....G 21 17 , 21 17 25:>KC526207,A/Ontario/001/2013(H3N2) 26 >KC535061,A/Manitoba/001/2012(H3N2) ..T...G...AT....G..T.......T.GA......T.....A....G...G.G..........C..A.T---------------- 36 33 , 17 17 26:>KC535061,A/Manitoba/001/2012(H3N2) 27 >KC535062,A/Manitoba/002/2012(H3N2) ..T...G...AT....G..T.......T.GA......T.....A....G...G.G..........C..A.T---------------- 37 33 , 18 17 27:>KC535062,A/Manitoba/002/2012(H3N2) 28 >KC539115,A/Alberta/049/2012(H3N2) ..T...G...AT....G..T.......T.GA......T.....A....G...G.G..........C..A.T.T......GGG....G 22 22 , 22 22 28:>KC539115,A/Alberta/049/2012(H3N2) 29 >KC539116,A/Alberta/050/2012(H3N2) ..T...G...AT....G..T.......T.GA......T.....A....G...G.G..........C..A.T.T......GGG....G 22 22 , 22 22 29:>KC539116,A/Alberta/050/2012(H3N2) 30 >KC539117,A/Alberta/051/2012(H3N2) ..T...G...AT....G..T.......T.GA......T.....A....G...G.G..........C..A.T.T......GGG...-- 24 23 , 21 21 30:>KC539117,A/Alberta/051/2012(H3N2) 31 >KC539121,A/Alberta/055/2012(H3N2) ..T...G...AT....G..T.......T.GA......T.....A....G...G.G..........C..A.T.T......GGG...-- 24 23 , 21 21 31:>KC539121,A/Alberta/055/2012(H3N2) 32 >KC539122,A/Alberta/056/2012(H3N2) ..T...G...AT....G..T.......T.GA......T.....A....G...G.G..........C..A.T.T......GGG....G 22 22 , 22 22 32:>KC539122,A/Alberta/056/2012(H3N2) 33 >KC539124,A/Alberta/058/2012(H3N2) ..T...G...AT....G..T.......T.GA......T.....A....G...G.G..........C..A.T.T......GGG....G 22 22 , 22 22 33:>KC539124,A/Alberta/058/2012(H3N2) 34 >KC539127,A/Alberta/061/2012(H3N2) ..T...G...AT....G..T.......T.GA......T.....A....G...G.G..........C..A.T.T......GGG....G 22 22 , 22 22 34:>KC539127,A/Alberta/061/2012(H3N2) 35 >KC539128,A/Alberta/062/2012(H3N2) ..T...G...AT....G..T.......T.GA......T.....A....G...G.G..........C..A.T.T......GGG....G 23 22 , 22 22 35:>KC539128,A/Alberta/062/2012(H3N2) 36 >KC539130,A/Alberta/064/2012(H3N2) ..T...G...AT....G..T.......T.GA......T.....A....G...G.G..........C..A.T.T......GGG....G 22 22 , 22 22 36:>KC539130,A/Alberta/064/2012(H3N2) 37 >KC539132,A/Alberta/066/2012(H3N2) ..T...G...AT....G..T.......T.GA......T.....A....G...G.G..........C..A.T.T......GGG....G 22 22 , 22 22 37:>KC539132,A/Alberta/066/2012(H3N2) 38 >KC539133,A/Alberta/067/2012(H3N2) ..T...G...AT....G..T.......T.GA......T.....A....G...G.G..........C..A.T.T......GGG....G 22 22 , 22 22 38:>KC539133,A/Alberta/067/2012(H3N2) 39 >KC539123,A/Alberta/057/2012(H3N2) ..T...G...AT....G..T.......T.GA......T.....A....G...G.G..........C..A.T.T......GGG....G 23 22 , 23 22 39:>KC539123,A/Alberta/057/2012(H3N2) 40 >KC539131,A/Alberta/065/2012(H3N2) ..T...G...AT....G..T.......T.GA......T.....A....G...G.G..........C..A.T.T......GGG....G 23 22 , 23 22 40:>KC539131,A/Alberta/065/2012(H3N2) 41 >KC539112,A/Alberta/046/2012(H3N2) ..T...G...AT....G..T.......T.GA......T.....A....G...G.G..........C..A.T.T......GGG...-- 25 23 , 22 21 41:>KC539112,A/Alberta/046/2012(H3N2) 42 >KC535026,A/British Columbia/001/2013(H3N2) ..T...G...AT..A....T....A..T.GA......T.....A....G...G............C..A.----------------- 40 33 , 19 16 42:>KC535026,A/British Columbia/001/2013(H3N2) 43 >JX913034,A/Czech Republic/121/2012(H3N2) ..T...G...AT............A..T..A......T.....A....G...G............C..A.................G 18 14 , 18 14 43:>JX913034,A/Czech Republic/121/2012(H3N2) 44 >KC535035,A/Quebec/012/2012(H3N2) ..T...G...AT...T...T.......T.GA......T.....A.A..G..AG............C..A...--------------- 37 32 , 19 17 44:>KC535035,A/Quebec/012/2012(H3N2) 45 >KC539118,A/Alberta/052/2012(H3N2) ..T...G...AT...T...T.T.....T.GA......T.....A.A..G..AG............C..A....T......G.....G 21 21 , 21 21 45:>KC539118,A/Alberta/052/2012(H3N2) 46 >KC539135,A/Alberta/069/2012(H3N2) ..T...G...AT...T...T.T.....T.GA......T.....A.A..G..AG............C..A....T......G.....G 21 21 , 21 21 46:>KC539135,A/Alberta/069/2012(H3N2) 47 >KC526213,A/Ontario/007/2013(H3N2) ..T...G...AT...T...T.T.....T.GA......T.....A.A..G..AG............C..A....T......G.....G 22 21 , 22 21 47:>KC526213,A/Ontario/007/2013(H3N2) 48 >KC539113,A/Alberta/047/2012(H3N2) ..T...G...AT...T...T.T.....T.GA......T.....A.A..G..AGC...........C..A....T......G.....G 22 22 , 22 22 48:>KC539113,A/Alberta/047/2012(H3N2) 49 >KC539114,A/Alberta/048/2012(H3N2) ..T...G...AT...T...T.T.....T.GA......T.....A.A..G..AG............C..A....T......G.....G 22 21 , 22 21 49:>KC539114,A/Alberta/048/2012(H3N2) 50 >KC539125,A/Alberta/059/2012(H3N2) ..T...G...AT...T...T.T.....T.GA......T.....A.A..G..AG............C..A....T......G.....G 22 21 , 22 21 50:>KC539125,A/Alberta/059/2012(H3N2) 51 >KC539136,A/Alberta/070/2012(H3N2) ..T...GC..AT...T...T.......T.GA....T.T.....A.A..G..AG....C.......C..A...........G.....G 23 22 , 23 22 51:>KC539136,A/Alberta/070/2012(H3N2) 52 >KC535063,A/Manitoba/003/2012(H3N2) ..T...GC..AT...T...T.......T.GA....T.T.....A.A..G..AG....C.......C.-------------------- 49 39 , 21 19 52:>KC535063,A/Manitoba/003/2012(H3N2) 53 >KC539129,A/Alberta/063/2012(H3N2) .AT...G...AT.GAT...T.......T.GA......T.....A.AA.G..AG............CT.A...........G.....G 24 24 , 24 24 53:>KC539129,A/Alberta/063/2012(H3N2) 54 >KC539126,A/Alberta/060/2012(H3N2) .AT...G...AT.GAT...T.......T.GA......T.....A.AA.G..AG............CT.A......Y....G.....G 26 25 , 26 25 54:>KC539126,A/Alberta/060/2012(H3N2) 55 >KC526211,A/Ontario/005/2013(H3N2) ..T...G...AT.......T......GTGGA......T.....A....G...G........A...C..A..A........G.....G 20 20 , 20 20 55:>KC526211,A/Ontario/005/2013(H3N2) 56 >KC526214,A/Ontario/008/2013(H3N2) ..T...G...AT.......T......GTGGA......T.....A....G...G........A...C..A..A........G.....G 20 20 , 20 20 56:>KC526214,A/Ontario/008/2013(H3N2) 57 >KC535025,A/British Columbia/026/2012(H3N2) ..T...G...AT.......T......GTGGA......T.....A....G...G........A...C..A.----------------- 38 34 , 17 17 57:>KC535025,A/British Columbia/026/2012(H3N2) 58 >KC535036,A/Quebec/013/2012(H3N2) ..T...G...AT.......T......GTGGA......T.....A....G...G........A...C..A.----------------- 37 34 , 17 17 58:>KC535036,A/Quebec/013/2012(H3N2) 59 >KC535037,A/Quebec/014/2012(H3N2) ..T...G...AT.......T......GTGGA......T.....A....G...G........A...C..A..---------------- 36 33 , 17 17 59:>KC535037,A/Quebec/014/2012(H3N2) 60 >KC535038,A/Quebec/015/2012(H3N2) ..T...G...AT.......T......GTGGA......T.....A....G...G........A...C..A..---------------- 36 33 , 17 17 60:>KC535038,A/Quebec/015/2012(H3N2) 61 >KC535040,A/Quebec/017/2012(H3N2) ..T...G...AT.......T......GTGGA......T.....A....G...G........A...C..A.----------------- 38 34 , 17 17 61:>KC535040,A/Quebec/017/2012(H3N2) 62 >KC535041,A/Quebec/018/2012(H3N2) ..T...G...AT.......T......GTGGA......T.....A....G...G........A...C..A..---------------- 36 33 , 17 17 62:>KC535041,A/Quebec/018/2012(H3N2) 63 >KC535047,A/Quebec/024/2012(H3N2) ..T...G...AT.......T......GTGGA......T.....A....G...G........A...C..A..---------------- 36 33 , 17 17 63:>KC535047,A/Quebec/024/2012(H3N2) 64 >KC535048,A/Quebec/025/2012(H3N2) ..T...G...AT.......T......GTGGA......T.....A....G...G........A...C..A..A--------------- 36 33 , 18 18 64:>KC535048,A/Quebec/025/2012(H3N2) 65 >KC535054,A/Quebec/033/2012(H3N2) ..T...G...AT.......T......GTGGA......T.....A....G...G........A...C..A..A--------------- 36 33 , 18 18 65:>KC535054,A/Quebec/033/2012(H3N2) 66 >KC535058,A/Quebec/037/2012(H3N2) ..T...G...AT.......T......GTGGA......T.....A....G...G........A...C..A..---------------- 36 33 , 17 17 66:>KC535058,A/Quebec/037/2012(H3N2) 67 >KC526205,A/Ontario/031/2012(H3N2) ..T...G...AT.......T.....AGTGGA......T.....A....G...G........A...C..A..A........G.....G 21 21 , 21 21 67:>KC526205,A/Ontario/031/2012(H3N2) 68 >KC526206,A/Ontario/032/2012(H3N2) ..T...G...AT.......T.....AGTGGA......T.....A....G...G........A...C..A..A........G.....G 21 21 , 21 21 68:>KC526206,A/Ontario/032/2012(H3N2) 69 >KC535034,A/Quebec/011/2012(H3N2) ..T...G...AT.......T......GTGGA......T.....A....G...G........A...C..A..---------------- 37 33 , 18 17 69:>KC535034,A/Quebec/011/2012(H3N2) 70 >KC535050,A/Quebec/028/2012(H3N2) ..T...G...AT.......T......GTGGA.....GT.....A....G...G........A...C..A..A--------------- 37 34 , 19 19 70:>KC535050,A/Quebec/028/2012(H3N2) 71 >KC535059,A/Quebec/038/2012(H3N2) ..T...G...AT.......T......GTGGA.....GT.....A....G...G........A...C..A..---------------- 37 34 , 18 18 71:>KC535059,A/Quebec/038/2012(H3N2) 72 >KC535051,A/Quebec/029/2012(H3N2) ..T...G...AT.......T......GTGGA......T.....A....G...G........A...C..A..A--------------- 37 33 , 19 18 72:>KC535051,A/Quebec/029/2012(H3N2) 73 >KC535053,A/Quebec/031/2012(H3N2) ..T...G...AT.......T......GTGGA......T.....A....G...G........A...C..A..A--------------- 37 33 , 19 18 73:>KC535053,A/Quebec/031/2012(H3N2) 74 >KC535064,A/Manitoba/004/2012(H3N2) ..T...G...AT.......T......GTGGA......T.....A....G...G........A...C..A.----------------- 38 34 , 18 17 74:>KC535064,A/Manitoba/004/2012(H3N2) 75 >KC535056,A/Quebec/035/2012(H3N2) ..T...G...AT.......T......GTGGA......T.....A...AG...G........A...C..A.----------------- 40 35 , 19 18 75:>KC535056,A/Quebec/035/2012(H3N2) 76 >KC535021,A/British Columbia/022/2012(H3N2) ..T...G...AT.......T......GTGGA......T.....A....G...G............C..A..---------------- 36 32 , 17 16 76:>KC535021,A/British Columbia/022/2012(H3N2) 77 >KC535028,A/British Columbia/003/2013(H3N2) ..T.A.G...AT.......T......GTGGA......T.....A....G...GA....A......C..A..---------------- 38 35 , 19 19 77:>KC535028,A/British Columbia/003/2013(H3N2) 78 >KC535032,A/British Columbia/007/2013(H3N2) ..T.A.G...AT.......T......GTGGA......T.....A....G...GA....A.....----------------------- 57 40 , 17 17 78:>KC535032,A/British Columbia/007/2013(H3N2) 79 >KC535033,A/British Columbia/008/2013(H3N2) ..T.A.G...AT.......T......GTGGA......T.....A....G...GA....A......C..A..---------------- 38 35 , 19 19 79:>KC535033,A/British Columbia/008/2013(H3N2) 80 >KC535020,A/British Columbia/021/2012(H3N2) ..T.A.G...AT.......T......GTGGA......T.....A....G...GA....A......C..A..---------------- 39 35 , 20 19 80:>KC535020,A/British Columbia/021/2012(H3N2) 81 >KC535029,A/British Columbia/004/2013(H3N2) ..T.A.G...AT.......T......GTGGA......T.....A....G...GA....A......C..A..---------------- 39 35 , 20 19 81:>KC535029,A/British Columbia/004/2013(H3N2) 82 >KC535019,A/British Columbia/020/2012(H3N2) -.T.A.G...AT.......T......GTGGA......T.....A....G...GA....A......C..A..A........G....-- 28 24 , 23 21 82:>KC535019,A/British Columbia/020/2012(H3N2) 83 >KC535023,A/British Columbia/024/2012(H3N2) ..T.A.G...AT.......T......GTGGA......T.....A....G...GA....A......C..A..---------------- 40 35 , 21 19 83:>KC535023,A/British Columbia/024/2012(H3N2) 84 >KC535024,A/British Columbia/025/2012(H3N2) ..T.A.G...AT.......T......GTGGA......T.....A...AG...GA....A......C..A.----------------- 42 37 , 21 20 84:>KC535024,A/British Columbia/025/2012(H3N2) 85 >KC535031,A/British Columbia/006/2013(H3N2) ..T.......AT.......T......GTGGA......T.....A....G...G............C..A..---------------- 37 31 , 18 15 85:>KC535031,A/British Columbia/006/2013(H3N2) 86 >KC535057,A/Quebec/036/2012(H3N2) ..T...G...AT.......T......GTGGA..CA..T.....A....A...G............C..A..---------------- 39 34 , 20 18 86:>KC535057,A/Quebec/036/2012(H3N2) ---Index-------------------------------------------GCCAGAATTGGCGAGCACTCTCTTGCACAAGTGTGGAGTCGTAGAGCGTATCATACATCCGGCTAACCCGCTGCTCCGGAAAGGTCA -codon-position------------------------------------ 1 2 2211 1 1 2 1 12 2 111 11 12 2 2 1 1 1 2 1 22 000000000000000000000000000000000000000000000000000000111111111111111111111111111111111 000111111111222222222333444444555566666667777788889999000000001111222222333334555555666 357023466889001446789224123578019900244990113625880188001134580139145699235671112347167 952802625021589077651185900622181439203035456594273537591487671315554936383716384057321
(same positions-numeration as in the pdf from fludb above
but substract 16 to get the WHO-enumeration (in the first part) )
Code:000000000000000000000000000000000000000000000000 000000000000011111111112222222223333333334445555 124456666777800134456780113488990122677890290236 963991469038348070481378459658468708324452745681 ------------------------------------------------ LTKQVSTEDSQEIVKYNSTRNLNIASVIRANEKTANVQSKGGKIDGIR >Index/2009/Egypt/Iowa ................................................ >Index/H3N3-2011-reassortedEI/2011(H3N2) ........N......H...........V...A................ >Index/H3N2-2011-normalEI/2011(H3N2) ......A...H...R....................SM........... >KC526210,A/Ontario/004/2013(H3N2) ........N......H.........A.V...A..............T. >KC535039,A/Quebec/016/2012(H3N2) ........N......H........TA.V...A...........----- >KC535052,A/Quebec/030/2012(H3N2) ........N......H........TA.V...A...........----- >KC535043,A/Quebec/020/2012(H3N2) ...H....N......H.........A.V...A...........----- >KC535060,A/Quebec/039/2012(H3N2) ........N......H.........A.V...A.I.........----- >KC539120,A/Alberta/054/2012(H3N2) ........N......H.........A.V...A..D...........T- >KC535055,A/Quebec/034/2012(H3N2) ........N......Q........TA.V...A..........------ >KC539119,A/Alberta/053/2012(H3N2) ...R.NI.................S.I...K....S.........E.- >A/Victoria/361(vaccine-strain)/2011(H3N2) .....NI.................S.I........S............ >KC539134,A/Alberta/068/2012(H3N2) ...R.NI.................S.I...K....S.........E.. >KC535022,A/British Columbia/023/2012(H3N2) ...R.NI..............S..S.I...K....SM......----- >KC535045,A/Quebec/022/2012(H3N2) ...R.NI..............S..S.I...K....SM......----- >KC535046,A/Quebec/023/2012(H3N2) ...R.NI..............S..S.I...K....SM......----- >KC535042,A/Quebec/019/2012(H3N2) ...R.NI..............S..S.I...K....SM......----- >KC526204,A/Ontario/030/2012(H3N2) ...R.NI.............S...S.I...K....S........N... >KC526209,A/Ontario/003/2013(H3N2) ...R.NI.............S...S.I...K....S........N--- >KC526212,A/Ontario/006/2013(H3N2) ...R.NI.............S...S.I...K....S........N... >KC535044,A/Quebec/021/2012(H3N2) ...R.NI.............S...S.I...K....S.......----- >KC535030,A/British Columbia/005/2013(H3N2) ...R.NI....K........S...S.I...K....S.......----- >KC526208,A/Ontario/002/2013(H3N2) ...R.NI.............S...S.I...K....S............ >KC535027,A/British Columbia/002/2013(H3N2) ...R.NI.............S...S.I...K....S.......----- >KC535049,A/Quebec/026/2012(H3N2) ...R.NI.............S...S.I...K....S.......----- >KC526207,A/Ontario/001/2013(H3N2) ...R.NI.........S...S...S.I...K....S.......M.... >KC535061,A/Manitoba/001/2012(H3N2) ...R.NI.....V.......S...S.I...K....S.......----- >KC535062,A/Manitoba/002/2012(H3N2) ...R.NI.....V.......S...S.I...K....S.......----- >KC539115,A/Alberta/049/2012(H3N2) ...R.NI.....V.......S...S.I...K....S............ >KC539116,A/Alberta/050/2012(H3N2) ...R.NI.....V.......S...S.I...K....S............ >KC539117,A/Alberta/051/2012(H3N2) ...R.NI.....V.......S...S.I...K....S...........- >KC539121,A/Alberta/055/2012(H3N2) ...R.NI.....V.......S...S.I...K....S...........- >KC539122,A/Alberta/056/2012(H3N2) ...R.NI.....V.......S...S.I...K....S............ >KC539124,A/Alberta/058/2012(H3N2) ...R.NI.....V.......S...S.I...K....S............ >KC539127,A/Alberta/061/2012(H3N2) ...R.NI.....V.......S...S.I...K....S............ >KC539128,A/Alberta/062/2012(H3N2) ...R.NI.....V.......S...S.I...K....S...........- >KC539130,A/Alberta/064/2012(H3N2) ...R.NI.....V.......S...S.I...K....S...........- >KC539132,A/Alberta/066/2012(H3N2) ...R.NI.....V.......S...S.I...K....S...........- >KC539133,A/Alberta/067/2012(H3N2) ...R.NI.....V.......S...S.I...K....S............ >KC539123,A/Alberta/057/2012(H3N2) ...R.NI.....V.......S...S.I...K....S...........- >KC539131,A/Alberta/065/2012(H3N2) ...R.NI.....V.......S...S.I...K....S............ >KC539112,A/Alberta/046/2012(H3N2) ...R.NI.....V.......S...S.I...K....S...........- >KC535026,A/British Columbia/001/2013(H3N2) ...R.NI..........N..S...S.I...K.R..S......------ >JX913034,A/Czech Republic/121/2012(H3N2) ...R.NIK.........N....D.S.I...K....S............ >KC535035,A/Quebec/012/2012(H3N2) ..ER.NI......I......S...S.I...K....S.......----- >KC539118,A/Alberta/052/2012(H3N2) ...R.NI.............S...S.I...K....S............ >KC539135,A/Alberta/069/2012(H3N2) ...R.NI.............S...S.I...K....S...........- >KC526213,A/Ontario/007/2013(H3N2) ...R.NI.............S...S.I...K....S............ >KC539113,A/Alberta/047/2012(H3N2) ...R.NI.............S...S.I...K....S............ >KC539114,A/Alberta/048/2012(H3N2) .K.R.NI.............S...S.I...K....S............ >KC539125,A/Alberta/059/2012(H3N2) ...R.NI.............S...S.I...K....S............ >KC539136,A/Alberta/070/2012(H3N2) ...R.NI.............S...S.I...K....S...........M >KC535063,A/Manitoba/003/2012(H3N2) ...R.NI.............S...S.I...K....S.....R------ >KC539129,A/Alberta/063/2012(H3N2) I..R.NI..G..........S...S.I...K....S............ >KC539126,A/Alberta/060/2012(H3N2) I..R.NI..G..........S...S.I...K....S............ >KC526211,A/Ontario/005/2013(H3N2) ...R.NI...........AGS...S.I...K....SM........... >KC526214,A/Ontario/008/2013(H3N2) ...R.NI...........AGS...S.I...K....SM........... >KC535025,A/British Columbia/026/2012(H3N2) ...R.NI...........AGS...S.I...K....SM.....------ >KC535036,A/Quebec/013/2012(H3N2) ...R.NI...........AGS...S.I...K....SM......----- >KC535037,A/Quebec/014/2012(H3N2) ...R.NI...........AGS...S.I...K....SM......----- >KC535038,A/Quebec/015/2012(H3N2) ...R.NI...........AGS...S.I...K....SM......----- >KC535040,A/Quebec/017/2012(H3N2) ...R.NI...........AGS...S.I...K....SM.....------ >KC535041,A/Quebec/018/2012(H3N2) ...R.NI...........AGS...S.I...K....SM......----- >KC535047,A/Quebec/024/2012(H3N2) ...R.NI...........AGS...S.I...K....SM......----- >KC535048,A/Quebec/025/2012(H3N2) ...R.NI...........AGS...S.I...K....SM......----- >KC535054,A/Quebec/033/2012(H3N2) ...R.NI...........AGS...S.I...K....SM......----- >KC535058,A/Quebec/037/2012(H3N2) ...R.NI...........AGS...S.I...K....SM......----- >KC526205,A/Ontario/031/2012(H3N2) ...R.NI..........RAGS...S.I...K....SM........... >KC526206,A/Ontario/032/2012(H3N2) ...R.NI..........RAGS...S.I...K....SM........... >KC535034,A/Quebec/011/2012(H3N2) ...R.NI...........AGS...S.I..VK....SM......----- >KC535050,A/Quebec/028/2012(H3N2) ...R.NI...........AGS..VS.I...K....SM......----- >KC535059,A/Quebec/038/2012(H3N2) ...R.NI...........AGS..VS.I...K....SM......----- >KC535051,A/Quebec/029/2012(H3N2) ...R.NI...........AGS...S.I...K....SML.....----- >KC535053,A/Quebec/031/2012(H3N2) ...R.NI...........AGS...S.I...K....SM......----- >KC535064,A/Manitoba/004/2012(H3N2) ...R.NI...........AGS...S.I...K....SM.....R----- >KC535056,A/Quebec/035/2012(H3N2) ...R.NI...........AGS...S.I.K.K....SM.....------ >KC535021,A/British Columbia/022/2012(H3N2) ...R.NI...........AGS...S.I...K....S.......----- >KC535028,A/British Columbia/003/2013(H3N2) ...R.NI...........AGS...S.I...K....S.......----- >KC535032,A/British Columbia/007/2013(H3N2) ...R.NI...........AGS...S.I...K....S..---------- >KC535033,A/British Columbia/008/2013(H3N2) ...R.NI...........AGS...S.I...K....S.......----- >KC535020,A/British Columbia/021/2012(H3N2) ...R.NI...........AGS...S.I...K....S...E...----- >KC535029,A/British Columbia/004/2013(H3N2) ...R.NI...........AGS...S.I...K....S....R..----- >KC535019,A/British Columbia/020/2012(H3N2) ...RINI...........AGS...S.I...K....S...........- >KC535023,A/British Columbia/024/2012(H3N2) ...R.NI...........AGS...S.I...K....S.......----- >KC535024,A/British Columbia/025/2012(H3N2) ...R.NI...........AGS...S.I.K.K....S......------ >KC535031,A/British Columbia/006/2013(H3N2) .....NI...........AGS...S.I...K....S..F....----- >KC535057,A/Quebec/036/2012(H3N2) ...R.NI...........AGS...S.I...K....S.......----- 000000000000000000000000000000000000000000000000 000000000000011111111112222222223333333334445555 124456666777800134456780113488990122677890290236 963991469038348070481378459658468708324452745681 ------------------------------------------------ LTKQVSTEDSQEIVKYNSTRNLNIASVIRANEKTANVQSKGGKIDGIR
Leave a comment:
Leave a comment: