Re: swine flu sequences (thread from h5n1experts)
---------------posted:2009/11/15---------------
******-mutations at the receptor binding domain (RBD) in HA
---------------posted:2009/11/15---------------
******-mutations at the receptor binding domain (RBD) in HA
Code:
111111111111112222222222222222222222222222 004455556667990000000000113333333333444444 898901237890890123456789010123456789012345 Y GVTAA WLV HPSTSADQQSLYQ EIAIRPKVRDQEGRM ------------------------------------------ >A/Lishui/01/2009/07 - ..... ... ............. ..........R.... >A/Ekaterinburg/01/2009/ . ..... ... ............. ..........R.... >A/Omsk/01/2009/ . ..... ... ............. ..........R.... >A/Finland/553/2009/05/10 . ..... ... ............. ..........R.... >A/Irkutsk/02/2009/ . ..... ... ............. ..........R.... >A/Mexico/InDRE4487/2009/04/14 . ..... ... ............. ..........R.... >A/Mexico/4603/2009/04/19 . ..... ... ............. ..........R.... >A/Texas/17/2009/04/24 . ..... ... ............. ..........R.... >A/Zhejiang/DTID-ZJU01/2009/06 . ..... ... ............. ..........R.... >A/Singapore/TLL51/2009/06/14 . ..... ... ............. ..........R.... >A/Singapore/TLL10/2009/07/27 . ..... ... ............. ..........R.... >A/New York/05/2009/04 . ..... ... ............. ..........X.... >A/New York/25/2009/04/24 . ..... ... ............. ..........X.... >A/New York/08/2009/04/25 . ..... ... ............. ..........X.... >A/New York/13/2009/04/25 . ..... ... ............. ..........X.... >A/New York/34/2009/04/25 . ..... ... ............. ..........X.... >A/New York/33/2009/04/25 . ..... ... ............. ..........X.... >A/New York/18/2009/04/25 . ..... ... ............. ..........X.... >A/Delaware/05/2009/04/28 . ..... ... ............. ..........X.... >A/Texas/08/2009/04/24 . ..... ... ............. ..........X.... >A/Texas/20/2009/04/25 . ..... ... ............. ..........X.... >A/Mexico/4108/2009/04/02 . ..... ... ............. ..........X.... >A/California/12/2009/04/22 . ..... ... ............. ..........X.... >A/Singapore/ON903/2009/07/04 . ..... ... ............. ..........X.... >A/Arizona/04/2009/04/27 . ..... ... ............. .........B..... >A/South Carolina/09/2009/04/26 . ..... ... ............. .........B..... >A/Italy/172/2009/ - ..... ... ............. .........E..... >A/Catalonia/387/2009/06/26 . ..... ... ............. .........E..... >A/Athens/893/2009/06/09 . ..... ... ............. .........E..... >A/Catalonia/S1120/2009/07/20 . ..... ... ............. .........E..... >A/Catalonia/S1165/2009/07/30 . ..... ... ............. .........E..... >A/Catalonia/S1209/2009/08/05 . ..... ... ............. .........E..... >A/Catalonia/S1205/2009/08/05 . ..... ... ............. .........E..... >A/Catalonia/S1199/2009/08/06 . ..... ... ............. .........E..... >A/Catalonia/S1222/2009/08/10 . ..... ... ............. .........E..... >A/Catalonia/S1227/2009/08/10 . ..... ... ............. .........E..... >A/Catalonia/S1215/2009/08/12 . ..... ... ............. .........E..... >A/Catalonia/S1249/2009/08/18 . ..... ... ............. .........E..... >A/Catalonia/S1260/2009/08/19 . ..... ... ............. .........E..... >A/Catalonia/S1265/2009/08/24 . ..... ... ............. .........E..... >A/Catalonia/S1269/2009/08/24 . ..... ... ............. .........E..... >A/Catalonia/S1272/2009/08/25 . ..... ... ............. .........E..... >A/Catalonia/S1273/2009/08/25 . ..... ... ............. .........E..... >A/Catalonia/S1300/2009/08/28 . ..... ... ............. .........E..... >A/Catalonia/S1304/2009/08/28 . ..... ... ............. .........E..... >A/Catalonia/S1333/2009/09/01 . ..... ... ............. .........E..... >A/Catalonia/S1331/2009/09/03 . ..... ... ............. .........E..... >A/Catalonia/S1350/2009/09/09 . ..... ... ............. .........E..... >A/Catalonia/S1379/2009/09/16 . ..... ... ............. .........E..... >A/Catalonia/S1453/2009/09/30 . ..... ... ............. .........E..... >A/Catalonia/S1490/2009/10/07 . ..... ... ............. .........E..... >A/Catalonia/S1545/2009/10/19 . ..... ... ............. .........E..... >A/Catalonia/S1592/2009/10/21 . ..... ... ............. .........E..... >A/Catalonia/S1606/2009/10/26 . ..... ... ............. .........E..... >A/Catalonia/S1637/2009/10/28 . ..... ... ............. .........E..... >A/Catalonia/S1641/2009/10/28 . ..... ... ............. .........E..... >A/Catalonia/378/2009/06/23 . ..... ... ............. .........E..... >A/Milan/83/2009/07/15 . ..... ... ............. .........E..... >A/Milan/80/2009/07/08 . ..... ... ............. .........E..... >A/Catalonia/S1183/2009/07/28 . ..... ... ............. .........E..... >A/Catalonia/S1182/2009/07/29 . ..... ... ............. .........E..... >A/Catalonia/S1254/2009/08/19 . ..... ... ............. .........E..... >A/Catalonia/S1286/2009/08/25 . ..... ... ............. .........E..... >A/Catalonia/S1237/2009/08/13 . ..... ... ............. .........E..... >A/Catalonia/S1248/2009/08/18 . ..... ... ............. .........E..... >A/Catalonia/S1479/2009/10/05 . ..... ... ............. .........E..... >A/Catalonia/S1605/2009/10/26 . ..... ... ............. .........E..... >A/Catalonia/S1236/2009/08/13 . ..... ... ............. .........E..... >A/Catalonia/S1478/2009/10/05 . ..... ... ............. .........E..... >A/Catalonia/S1587/2009/10/22 . ..... ... ............. .........E..... >A/Catalonia/S1436/2009/09/28 . ..... ... ............. .........E..... >A/Almati/01/2009/ . ..... ... ............. .........E..... >A/New Jersey/01/2009/04 . ..... ... ............. .........E..... >A/Sapporo/1/2009/06/11 . ..... ... ............. .........E..... >A/Paris/2591/2009/05/01 . ..... ... ............. .........E..... >A/Hong Kong/2369/2009/06/11 . ..... ... ............. .........E..... >A/California/25/2009/06/15 . ..... ... ............. .........E..... >A/Nagasaki/HA-44/2009/08/20 . ..... ... ............. .........E..... >A/Changsha/78/2009/06/29 . ..... ... ............. .........E..... >A/Ancona/05/2009/07/12 . ..... ... ............. .........E..... >A/Catalonia/S1632/2009/10/28 . ..... ... ............. .........E..... >A/Catalonia/S1161/2009/07/28 . ..... ... ............. .........E..... >A/Catalonia/S1604/2009/10/26 . ..... ... ............. .........E..... >A/Catalonia/NS2001/2009/08/03 - ----- ... ............. .........G..... >A/Catalonia/NS1706/2009/07/29 . ..... ... ............. .........G..... >A/Catalonia/NS2008/2009/08/03 . ..... ... ............. .........G..... >A/Texas/05/2009/04/15 . ..... ... ............. .........G..... >A/Texas/11/2009/04/23 . ..... ... ............. .........G..... >A/Mexico/InDRE4114/2009/ . ..... ... ............. .........G..... >A/Mexico/InDRE4114/2009/ . ..... ... ............. .........G..... >A/New York/04/2009/04 . ..... ... ............. .........G..... >A/Sao Paulo/53206/2009/07/19 . ..... ... ............. .........G..... >A/Sao Paulo/53225/2009/08/01 . ..... ... ............. .........G..... >A/Georgia/01/2009/04/27 . ..... ... ............. .........G..... >A/Zhejiang-Yiwu/11/2009/09/06 . ..... ... ............. .........G..... >A/Zhejiang/DTID-ZJU02/2009/09/07 . ..... ... ............. .........G..... >A/Zhejiang/DTID-ZJU03/2009/09/07 . ..... ... ............. .........G..... >A/Mexico/3955/2009/04/02 . ..... ... ............. .........G..... >A/New York/4099/2009/06/13 . ..... ... ............. .........N..... >A/New York/4576/2009/07/08 . ..... ... ............. .........N..... >A/Sao Paulo/53845/2009/08/02 . ..... ... ............. .........N..... >A/Sao Paulo/53838/2009/08/01 . ..... ... ............. .........N..... >A/Nebraska/02/2009/04 . ..... ... ............. .........X..... >A/California/13/2009/04/21 . ..... ... ............. .........X..... >A/Texas/10/2009/04/23 . ..... ... ............. .........X..... >A/New York/31/2009/04/24 . ..... ... ............. .........X..... >A/Texas/04/2009/04/14 . ..... ... ............. .........XX.... >A/California/07/2009/04/09 . ..... ... ............. .........XX.... >A/Singapore/GP2312/2009/07/31 . ..... ... ............. .........XXXX.. >A/Singapore/ON141/2009/06/02 . ..... ... ............. ........G...... >A/Singapore/ON1118/2009/07/09 . ..... ... ............. ........X...... >A/Singapore/GP2695/2009/08/06 . ..... ... ............. ........X...... >A/Singapore/GP2687/2009/08/06 . ..... ... ............. ........X....X. >A/Singapore/ON2081/2009/09/13 . ..... ... ............. ........X..XXX. >A/Singapore/ON1187/2009/07/15 . ..... ... ............. ........XX.X.X. >A/Singapore/GP2641/2009/08/05 . ..... ... ............. .......XXX.XX.. >A/Singapore/GP2651/2009/08/05 . ..... ... ............. .......XXX.XX.. >A/Sto Domingo/WR1057N/2009/07/02 . ..... ... ............. ..T............ >A/Hiroshima/201/2009/06/17 . ..... ... ............. ..T......G..... >A/Pennsylvania/14/2009/ . ..... ... ............. ..X............ >A/Auckland/1/2009/04/25 . ..... ... ..........I.. ............... >A/California/04/2009/06/05 . ..... ... ..........I.. ............... >A/Singapore/TLL38/2009/08/06 . ..... ... ..........I.. ............... >A/Singapore/TLL40/2009/08/08 . ..... ... ..........I.. ............... >A/Singapore/TLL42/2009/08/08 . ..... ... ..........I.. ............... >A/New York/35/2009/04/25 . ..... ... ..........J.. ............... >A/South Carolina/10/2009/04/26 . ..... ... ..........J.. ............... >A/Hiroshima/230/2009/06/25 . ..... ... ..........J.. ............... >A/New York/11/2009/04/25 . ..... ... ..........J.. .........X..... >A/Catalonia/S1384/2009/09/17 . ..... ... .........G... ............... >A/Chengdu/18/2009/07/26 . ..... ... .......R..... ............... >A/Singapore/ON1138/2009/07/13 . ..... ... ......G...... ............... >A/Sao Paulo/53823/2009/08/01 . ..... ... ....I........ ............... >A/New York/3502/2009/05/16 . ..... ... ....N........ ............... >A/Utsunomiya/2/2009/06/16 . ..... ... ....N........ ............... >A/Utsunomiya/1/2009/06/16 . ..... ... ....N........ ............... >A/Niigata/700/2009/06/22 . ..... ... ....N........ ............... >A/Catalonia/S1369/2009/09/15 . ..... ... ....N........ .........E..... >A/Catalonia/S1187/2009/07/30 . ..... ... ....N........ .........E..... >A/swine/Singapore-Q/M168/2009/ . ..... ... ...N......... ............... >A/New York/28/2009/04 . ..... ... ...X......... ............... >A/Kansas/03/2009/04/24 . ..... ... ..X.......... ............... >A/New York/17/2009/04 . ..... ... ..X.......... ............... >A/New York/27/2009/04 . ..... ... ..X.......... ............... >A/New York/18/2009/ . ..... ... ..X.......... ..........X.... >A/Singapore/ON313/2009/06/19 . ..... ... X.....X...... ............... >A/Colombia/08/2009/04/25 . ..... ... XXXXXXXXXXXXX ............... >A/Osaka/180/2009/ . ..... ..I ............. ............... >A/Osaka/1/2009/05/16 . ..... ..I ............. ............... >A/Singapore/ON1163/2009/07/14 . ..... ..I ............. ............... >A/Michigan/06/2009/ . ...T. ... ............. ............... >A/Wisconsin/629-D01445/2009/05/24 . ...T. ... ............. ............... >A/Italy/128/2009/06/20 . ...T. ... ............. ............... >A/Toronto/T0106/2009/07/07 . ...T. ... ............. ............... >A/Shanghai/60T/2009/05/28 . ...T. ... ............. ............... >A/Ancona/04/2009/07/01 . ...T. ... ............. ...T........... >A/Catalonia/S1169/2009/07/28 . ...T. ... ............. ...T........... >A/New York/12/2009/04/25 . ...V. ... ............. ............... >A/New York/12/2009/04/25 . ...X. ... ............. ............... >A/Wisconsin/629-D02064/2009/05/22 . .A... ... ............. ............... >A/Indiana/09/2009/04/22 . .I... ... ............. ............... >A/Michigan/04/2009/04/24 . .I... ... ............. ............... >A/Michigan/05/2009/05/05 . .I... ... ............. ............... >A/New York/3573/2009/05/21 . .I... ... ............. ............... >A/New York/3576/2009/05/21 . .I... ... ............. ............... >A/New York/3654/2009/05/26 . .I... ... ............. ............... >A/Tokushima/1/2009/06/02 . .I... ... ............. ............... >A/New York/4014/2009/06/10 . .I... ... ............. ............... >A/Singapore/GP2316/2009/07/31 . X.... .X. ..........X.. .X..........XX. >A/Sw/Alberta/OTH-33-24/2009/05/03 . ..... ... ............H .......M....... >A/Sw/Alberta/OTH-33-21/2009/05/05 . ..... ... ............. .......M....... >A/Sw/Alberta/OTH-33-3/2009/05/03 . ..... ... ............. .........V..... ------------------------------------------ Y GVTAA WLV HPSTSADQQSLYQ EIAIRPKVRDQEGRM 111111111111112222222222222222222222222222 004455556667990000000000113333333333444444 898901237890890123456789010123456789012345
Code:
receptor binding domain of influenza-A viruses (Nov. 2006) positions 98,134-138,153-155,184-196,216-230 in hemagglutinin (H3-numbering) count,species-serotype,amino-acids at these positions,representative sequence ----------------------------------------------------------------------------------------------------- Y GVTAA WIT HPPTTSEQQSLYQ EIAARPKVRGQAGRM 9 A-H1N1: Y GVTAA WIT HPPTTSEQQSLYQ EIAARPKVRGQAGRM A/turkey/Minnesota/1661/81(H1N1) 4 A-H1N1: . ..... ... .....N....... ............... A/pintail duck/Alberta/210/2002(H1N1) .....S.S..L.....NIGD.RA..H....K.....D.E..I 325 H-H1N1: Y GVSAS WLT HPPNIGDQRALYH EIAKRPKVRDQEGRI A/Wyoming/4/2003(H1N1) 64 H-H1N1: . ..T.. ... ..S.......I.. ............... A/Switzerland/5389/95 (H1N1) 44 H-H1N1: . ..... ... ......N...... ............... A/Yokohama/62/2002(H1N1) 35 H-H1N2: . ..... ... .........T... ..T............ A/Scotland/15/02(H1N2) 26 H-H1N1: . ..T.. ... ..S..E..KTI.R .........N..... A/Ohio/201/1983(H1N1) 22 H-H1N1: . ..... ... ........K.... ............... A/New York/4/2006(H1N1) 17 H-H1N1: . ..T.. ... ..S..E..KTI.R ...E.....G.A... A/USSR/92/77(H1N1) 16 H-H1N1: . ..T.. ... ..S.......I.. .........G..... A/Taiwan/01/1986(H1N1) 13 H-H1N1: . ..T.. ... ..S.M.....I.. ............... A/Yokohama/24/2000(H1N1) 12 H-H1N2: . ..... ... ......N..T... ..T............ A/Switzerland/3100/2002(H1N2) 8 H-H1N1: . ..T.. ... ..S.......I.. ..T............ A/New York/694/1995(H1N1) 8 H-H1N2: . ..... ... ......N..T..N ............... A/Wisconsin/12/2001(H1N2) 7 H-H1N1: . ..... ... ..S...V...I.. .........G..... A/Nanchang/9/1996(H1N1) 7 H-H1N1: . ..T.. ... ..S..R....I.. ............... A/Suita/1/89/(R)(H1N1) 7 H-H1N1: . ..T.. ... ..S.M.....I.. ...R........... A/South Australia/64/2000(H1N1) 7 H-H1N2: . ..... ... .........T..N ............... A/Yokohama/47/2002(H1N2) 5 H-H1N1: . ..... ... ......B...... ............... A/Wellington/18/2000(H1N1) 5 H-H1N1: . ..... ... ..S.......I.. ............... A/Singapore/15/96(H1N1) 5 H-H1N1: . ..T.. ... ..S..E..KTI.R ............... A/Memphis/7/1980(H1N1) 4 H-H1N1: - ..... ... ............. ............... A/Shiraz/22/2005(H1N1) 4 H-H1N1: . ..... ... ............. .........N..... A/South Canterbury/35/2000(H1N1) 4 H-H1N1: . ..... ... ..S...V...I.. ............... A/Nanchang/17/1996(H1N1) 4 H-H1N1: . ..T.A ... ....SKE.QN..Q ...E.......A..M A/Puerto Rico/8/34(H1N1) 4 H-H1N1: . ..T.A ... ..S.SK..QNI.Q ...E.......A..M A/PR/8/34(HON1) 4 H-H1N1: . ..T.. ... ..S..E..KTI.R .........G..... A/Fiji/15899/83)] ....AT.A..IV....TSN..QS..Q....A.....G.A..M 11 S-H1N1: Y GATAA WIV HPPTSNDQQSLYQ EIAARPKVRGQAGRM A/swine/Nederweert/13O/96(H1N1) 11 S-H1N1: . .V... .L. .....T....... ............... A/swine/Wisconsin/1/61(H1N1) 10 S-H1N1: . ..... ... ....N........ ............... A/Swine/Netherlands/477/93(H1N1) 6 S-H1N1: . .V... .L. .....T....... ...T........... A/Swine/Indiana/1726/1988(H1N1) 6 S-H1N2: . .V... .L. ..S..A....... ...T.....D..... A/Swine/Ohio/891/01(H1N2) 5 S-H1N1: . .V... .L. .....T....... ...S........... A/Swine/Wisconsin/457/98(H1N1) 4 S-H1N1: . ..... ... .....S....... ...........T... A/swine/Best/5R/96(H1N1) 4 S-H1N1: . .I... ... ....TS....... ........K...... A/Swine/Netherlands/12/85(H1N1) 4 S-H1N1: . .T.S. ... ....N........ ............... A/swine/Someren/14M/96(H1N1) 4 S-H1N2: - .V... .L. .....A....... ...T.....D..... A/SW/OH/7802/00(H1N2) ....GSR...LT...NDDTE.RT.......T....N..G... 11 A-H2N3: Y GGSRA WLT HPNDDTEQRTLYQ EIATRPKVNGQGGRM A/Pintail duck/Alberta/293/77 (H2N3) 6 A-H2N2: . ..... ... ....E........ ............... A/mallard/Potsdam/178-4/83 (H2N2) 6 A-H2N5: - ----- ... ....E....A... ......E....R... A/tern/Australia/91/2004(H2N5) 5 A-H2N3: . ..... ... .....A....... ............... A/Silky chicken/PA/9600897/96 (H2N3) 4 A-H2N2: . ..... ... .....A....... ............... A/guinea/NJ/3070/91 (H2N2) 4 A-H2N9: . ..... ... ............. ............... A/teal/Alberta/16/97(H2N9) ......K..........EA...A.......A......L.S.. 5 H-H2N2: Y GGSKA WLT HPNDEAEQRALYQ EIAARPKVNGLGSRM A/Taiwan/1/67(H2N2) 4 H-H2N2: . ...M. ... ............. ............... A/Taiwan/1964(H2N2) 4 H-H2N2: . ...R. ... .....T...T... ...T........G.. A/Japan/305/1957(H2N2) 4 H-H2N2: . ...R. ... .....T...T... ...T........... A/Victoria/15681/59 (H2N2) 4 H-H2N2: . ...R. ... .....T...T... ...T......Q.G.. A/Leningrad/134/57 (H2N2) ......N........STNQ..TN..V.N.GS..W.R.QSG.I 13 A-H3N8: Y GGSNA WLT HPSTNQEQTNLYV NIGSRPWVRGQSGRI A/pintail duck/ALB/169/1980(H3N8) 6 A-H3N2: . ..... ... ............. ............... A/pintail duck/ALB/86/1976(H3N2) 5 A-H3N2: . ...G. ... .........T... ......L........ A/duck/Korea/S9/03(H3N2) 4 A-H3N8: . ...S. ... ............. ............... A/mallard/Alberta/127/00(H3N8) ....R.G.........S.....K..I.......L........ 3 C-H3N8: Y GRSGA WLT HPSSNQEQTKLYI NIGSRPLVRGQSGRI A/canine/Texas/1/2004(H3N8) .................................W........ 16 E-H3N8: Y GRSGA WLT HPSSNQEQTKLYI NIGSRPWVRGQSGRI A/equine/Wisconsin/1/03(H3N8) 15 E-H3N8: . ..... ... .....K....... ............... A/equine/Suffolk/89(H3N8) 8 E-H3N8: . ..... ... .....N....... ............... A/Equine/LaPlata/1/93(H3N8) 8 E-H3N8: . ..... ... ......Q..E... ............... A/equine/Oklahoma/2000(H3N8) ....T.S........GTDSD.IS..A.......R..DV.S.. 347 H-H3N2: Y GTSSA WLT HPGTDSDQISLYA NIGSRPRVRDVSSRI A/Western Australia/50/2003(H3N2) 300 H-H3N2: . ..... ..H ..S.......... ......W..G..... A/Western Australia/9/2000(H3N2) 223 H-H3N2: . ..... ... .....N....... ..........IP... A/Zhejiang/546/04(H3N2) 197 H-H3N2: . ..... ..H ............. ......W..G..... A/Western Australia/36/2002(H3N2) 122 H-H3N2: . ...Y. ..H ..S.....T.... ......W..G..... A/Wellington/3/97(H3N2) 116 H-H3N2: . ...Y. ..H ..S.....T...V ......W..G..... A/Yokohama/68/96(H3N2) 108 H-H3N2: . .K.Y. ..H ..S.....T...V ......W..GI.... A/West_Virginia/1/95(H3N2) 81 H-H3N2: . ..... ..H ..S.....T.... ......W..G..... A/zhejiang/06/99(H3N2) 65 H-H3N2: . .K.Y. ..H ..S.....T...V ......W..GL.... A/Texas/57/93(H3N2) 65 H-H3N2: . ..... ... ....YN....... ..........IP... A/Western Australia/78/2005(H3N2) 64 H-H3N2: . .E.Y. ..H ..S..RE.T...V ......W..GL.... A/Victoria/2/90(H3N2) 58 H-H3N2: . ..... ... .....N....... ...........P... A/Zhejiang/95/03(H3N2) 57 H-H3N2: . ..... ... .....N...F... .........NIP... A/Zhejiang/209/05(H3N2) 53 H-H3N2: . .K.Y. ..H ..S.....T...V ...F..W..GL.... A/New York/752/1993(H3N2) 45 H-H3N2: . .K.Y. ..H ..S.....T...V D..Y..W..GL.... A/Texas/5/94(H3N2) 44 H-H3N2: . ..... ... ....NN....... ..........IP... A/Whanganui/69/2004(H3N2) 43 H-H3N2: . .G.Y. ..Y ..S..KE.TN..V ......W..GL.... A/Wellington/4/85(H3N2) 36 H-H3N2: . .G.Y. ..H ..S..RE.TN..V ......W..GL.... A/Wellington/5/89(H3N2) 34 H-H3N2: . .G.Y. ..H ..S.....T...V ......W..GQ.... A/Yokohama/73/92(H3N2) 33 H-H3N2: . ..... ..H ............. ............... A/zhejiang/8/2002(H3N2) 30 H-H3N2: . .G.Y. ..H ..S.....T...V ......W..GL.... A/Stockholm/12/92(H3N2) 28 H-H3N2: . ..... ..H ............. ....G.W..G..... A/New York/97/2002(H3N2) 25 H-H3N2: . ...F. ..H ..S.....T.... ......W..G..... A/Zhejiang/18/98(H3N2) 25 H-H3N2: . ...Y. ..H ..S.....T...V ......W..GI.... A/Washington/5/96(H3N2) 23 H-H3N2: . .D.Y. ..H ..S..RE.T...I ......W..GL.... A/Wellington/66/92(H3N2) 22 H-H3N2: . .G.N. ... ..S.NQE.T...V ......W..GL.... A/Northern Territory/1960(H3N2) 21 H-H3N2: . .G.N. ..Y ..S..QE.T...V ......W..GL.... A/Udorn/72(H3N2) 17 H-H3N2: . .G.Y. ..H ..I..RE.TN..V ......W..GL.... A/Tokyo/1276/(H3N2) 15 H-H3N2: . ..... ..H ..S.......... ......W..G...I. A/Taiwan/0275/2000 (H3N2) 15 H-H3N2: . ..... ... ............. ..........I.... A/Western Australia/58/2004(H3N2) 14 H-H3N2: . .G.Y. ..H ..S..R..T...V ......W..GQ.... A/Shanghai/24/90(H3N2) 13 H-H3N2: - ..... ..H ..S.......... ......W..G..... A/Zaragoza/RR658/00(H3N2) 13 H-H3N2: . .G.Y. ..Y ..S..KE.TN..V ...P..W..GL.... A/Stockholm/4/(H3N2) 13 H-H3N2: . ..... ... .........N... ...........P... A/Zhejiang/80/03(H3N2) 13 H-H3N2: . ...Y. ..H ..S.....T...V ......W..G...I. A/Wisconsin/3/96(H3N2) 12 H-H3N2: . .G... ..Y ..S..KE.TD..V .V....W..GL...V A/Rotterdam/5828/77(H3N2) 12 H-H3N2: . ..... ... ............. ...........P... A/Zhejiang/92/03(H3N2) 11 H-H3N2: . .G.Y. ..Y ..S..KE.TN..V .V....W..GL.... A/Texas/1/77(H3N2) 11 H-H3N2: . .K.Y. ..H ..S.....T...V ......W..GQ.... A/Wuzhou/1/94(H3N2) 11 H-H3N2: . ..... ..H ............. ..........I.... A/StaCatarina/327/02(H3N2) 10 H-H3N2: - ...Y. ..H ..S.....T...V ......W..G..... A/Madrid/SO1747/98(H3N2) 10 H-H3N2: . ..... ... .....N....... ............... A/Waikato/108/2003(H3N2) 9 H-H3N2: . .E.Y. ..H ..I..RE.T...V ......W..GL.... A/Washington/15/91(H3N2) 9 H-H3N2: . .G.N. ..Y ..S..QE.TN..V ......W..GL.... A/Port Chalmers/73(H3N2) 9 H-H3N2: . ..... ... .....N..T.... ..........IP... A/Waikato/2/2005(H3N2) 8 H-H3N2: - ...Y. ..H ..S.....T.... ......W..G..... A/San Sebastian/RR390/98(H3N2) 8 H-H3N2: . .E.Y. ..H ..S..RE.T...I ......W..GL.... A/Stockholm/20/91(H3N2) 8 H-H3N2: . ..... ..H ............. ......W..G...K. A/Western Australia/35/2002(H3N2) 8 H-H3N2: . ..... ... ............. ..........X.... A/New York/473/2003(H3N2) 7 H-H3N2: . .K.YS ..H ..S.....T...V D..Y..W..GL.... A/Spain/378/95(H3N2) 7 H-H3N2: . ...F. ..H ........T.... ......W..G..... A/Virginia/21817/99(H3N2) 7 H-H3N2: . ..... ..H ..S.......... ......W..G...K. A/South Australia/147/99(H3N2) 7 H-H3N2: . ..... ..H ..S.....T.... ......W..GI.... A/Neuquen/V690/98(H3N2) 7 H-H3N2: . ..... ... .....N....... ..........I.... A/Zhejiang/550/04(H3N2) 7 H-H3N2: . ..... ... .....N....... S......I...P... A/Turkey/2108/2005(H3N2) 7 H-H3N2: . ...Y. ..H ..S.....T.I.V ......W..GI.... A/zhejiang/10/98(H3N2) 6 H-H3N2: . .K.Y. ..H ..S.....T...V ...F..W..GQ.... A/Vermont/3/94(H3N2) 6 H-H3N2: . ..... ..H ............. ......W..G...I. A/United Kingdom/C4-13/2003(H3N2) 6 H-H3N2: . ..... ..H ..S.......... ....G.W..G..... A/South Australia/71/2000(H3N2) 6 H-H3N2: . ..... ... .....N...F... S........NIP... A/Sri Lanka/146/2005(H3N2) 6 H-H3N2: . ...Y. ..H ..S.....T.I.V ......W..G..... A/Wuzhou/19/96(H3N2) 5 H-H3N2: - ..... ... ............. ............... A/Yilan/566/04(H3N2) 5 H-H3N2: . .G.Y. ..Y ..S.EKE.TN..V ......W..GL.... A/Stockholm/10/85(H3N2) 5 H-H3N2: . .K.Y. ..H ..S.....T...V D..Y..W..GQ.... A/Paris/363/95(H3N2) 5 H-H3N2: . .K.YS ..H ..S.....T...V ......W..GL.... A/Stockholm/1/93(H3N2) 5 H-H3N2: . .K.YT ..H ..S.....T...V ......W..GL.... A/Wyoming/1/93(H3N2) 4 H-H3N2: . .E.Y. ..H ..S..RE.TK..V ......W..GL.... A/Beijing/353/89(H3N2) 4 H-H3N2: . .G.Y. ..H ..S..RE.TK..V ......W..GL.... A/Colorado/2/(H3N2) 4 H-H3N2: . .G.Y. ..H ..S..RE.TN..V ......W..GQ.... A/Czechoslovakia/19/89(H3N2) 4 H-H3N2: . .G.Y. ..Y ..I.EKE.TN..V ......W..GL.... A/Stockholm/8/(H3N2) 4 H-H3N2: . .G.YT ..Y ..S..KE.TN..V ......W..GL.... A/Memphis/7/85(H3N2) 4 H-H3N2: . .K.Y. ..H ..S.....T...V ...F..W..GL..G. A/Pennsylvania/9/93(H3N2) 4 H-H3N2: . .K.Y. ..H ..S.....T...V ...Y..W..GL.... A/Washington/26/93(H3N2) 4 H-H3N2: . .K.YS ..H ..S.....T...V ...F..W..GL.... A/Washington/41/93(H3N2) 4 H-H3N2: . .K.YS ..H ..S.....T...V ......W..GI.... A/New York/635/1996(H3N2) 4 H-H3N2: . .K.YX ..H ..S.....T...V ......W..GL.... A/New York/772/1993(H3N2) 4 H-H3N2: . ..... ... .....N....... ..........XP... A/Finland/484/2004 (H3N2) 4 H-H3N2: . ..... ... ............. ......K...I.... A/Stockholm/26/2002(H3N2) 4 H-H3N2: . ..... ... ............. .......I....... A/South Korea/C5-4/2002(H3N2) 4 H-H3N2: . ..... ... ........T...V ......W..G..... A/Kyongbuk/320/2002(H3N2) 4 H-H3N2: . ....S ..H ............. ......W..G..... A/New York/216/2003(H3N2) 4 H-H3N2: . ...Y. ..H ..S.....TR..V ......W..GI.... A/Guangzhou/6/96(H3N2) 4 H-H3N2: . ...Y. ..H ..S.....T.... ......W..G...I. A/Sydney/05/97-like(H3N2) 4 H-H3N2: . ...Y. ..H ..S...V.T...V ......W..GI.... A/Nanchang/933/95(H3N2) 4 H-H3N2: . ...Y. ..H ..S...V.T...V ......W..G..... A/thailand/94/96(H3N2) 4 H-H3N2: . ...Y. ..H ..S.N...T.... ......W..G..... A/Seoul/69/97(H3N2) ....G.N....Y...S..RE..N..V..V....W..GL.... 8 S-H3N2: Y GGSNA WLY HPSTDREQINLYV NVGSRPWVRGLSSRI A/Swine/Netherlands/L2/93(H3N2) 6 S-H3N2: . ...S. ... ............. ............... A/Swine/Spain/39139/2002(H3N2) 6 S-H3N2: . ...YS ..H .....S..TS... .I........I.... A/Swine/Texas/4199-2/98(H3N2) 6 S-H3N2: . .S.Y. ..H ..G...D.T.... .I........V..I. A/swine/Quebec/Biovet1/05(H3N2) 4 S-H3N2: . .T.S. ..H .....SD..SV.A .I........I.... A/swine/Guangdong/5/2003(H3N2) 4 S-H3N2: . .T.Y. ..H .....SD.TS... .I........V..I. A/Swine/Wisconsin/14094/99(H3N2) ....K.G....K......T..T...K..I........Q.G.. 27 A-H4N6: Y GKSGA WLK HPSTDTEQTNLYK NIGSRPWVRGQSGRI A/pintail/Alberta/269/2001(H4N6) 10 A-H4N2: . ..... ... ............. ............... A/pintail duck/ALB/599/1979(H4N2) 10 A-H4N8: . ..... ... ............. ............... A/pintail duck/ALB/220/1977(H4N8) .....................................L.S.. 2 S-H4N6: Y GKSGA WLK HPSTDTEQTNLYK NIGSRPWVRGLSSRI A/Swine/Ontario/01911-2/99 (H4N6) ....V.S....I..SNDAA...K..Q.K.AT.SK.N.Q.G.M 249 A-H5N1: Y GVSSA WLI HSNDAAEQTKLYQ KIATRSKVNGQSGRM A/white-backed munia/Hong Kong/2469/2006(H5N1) 203 A-H5N1: . ..... ... .P........... R.............. A/white peafowl/Bangkok/Thailand/CU-29/04(H5N1) 201 A-H5N1: . ..... ... .P.......R... ............... A/wild duck/Shanghai/59/04(H5N1) 115 A-H5N1: . ..... ... .P........... ............... A/tree sparrow/Henan/4/2004(H5N1) 40 A-H5N1: . ..... ... .P.NE....R... ............... A/grey heron/Hong Kong/837/2004(H5N1) 38 A-H5N1: . ..... ... .P........... E....P......... A/Silky Chicken/Hong Kong/p17/97 (H5N1) 30 A-H5N1: . ..... ... .P......I.... ............... A/tree sparrow/Henan/3/2004(H5N1) 30 A-H5N2: . ..... ... .P......I.... E....P......... A/chicken/Taiwan/1209/03(H5N2) 30 A-H5N2: . ..... ... .P........... E....P......... A/wigeon/Ohio/379/1988(H5N2) 25 A-H5N3: . ..... ... .P........... E....P......... A/teal/Italy/3812/2005(H5N3) 22 A-H5N1: . ..... ... .P..E....R... ............... A/Quail/Shantou/911/05(H5N1) 13 A-H5N1: . ..... ... .P......I.... T.............. A/goose/Guiyang/337/2006(H5N1) 11 A-H5N1: . ..... ... .P.......RI.. ............... A/Duck/Hunan/191/05(H5N1) 10 A-H5N1: . ..... ... .P.NE........ ............... A/goose/Guangxi/3714/2005(H5N1) 10 A-H5N9: . ..... ... .P........... E....P......... A/mallard/Sweden/80/02(H5N9) 9 A-H5N1: - ..... ... ............. ............... A/goose/Yunnan/3359/2006(H5N1) 7 A-H5N1: - ..... ... .P.......R... ............... A/turkey/Suzdalka/Nov-01/05(H5N1) 7 A-H5N1: . ...A. ... .P........... R.............. A/wild bird/Vietnam/434/2005(H5N1) 7 A-H5N2: . ..... ... .P........... E....PR........ A/duck/NY/44018-2/00(H5N2) 6 A-H5N1: . ...A. ... .P........... ............... A/slaty-backed gull/Shandong/59/04(H5N1) 6 A-H5N1: . ..... ... .P..E....R... ..............I A/quail/Viet Nam/15/2005(H5N1) 6 A-H5N1: . ..... ... ........I.... ............... A/goose/Shantou/11989/2006(H5N1) 6 A-H5N2: . ..... ... .P......A.... I....P......... A/Chicken/Pennsylvania/10210/86(H5N2) 6 A-H5N2: . ..... ... .P......A.... .....P......... A/Turkey/Virginia/6962/83(H5N2) 6 A-H5N2: . ..... ... ............. .....PQ....R... A/chicken/Guatemala/45511-5/00 (H5N2) 5 A-H5N1: . ..... ... .P...T....... ............... A/goose/Guiyang/3610/2005(H5N1) 5 A-H5N1: . ..... ... .P.N.E....... ......R........ A/Goose/Hong Kong/ww491/2000(H5N1) 4 A-H5N1: . ..... ... .P......I.... R.............. A/Hatay/2004/(H5N1) 4 A-H5N1: . ..... ... .P........... ..............I A/goose/China/F3/2004(H5N1) 4 A-H5N1: . ..... ... .P...T....... R.............. A/chicken/Thailand/Kamphaengphet-3-07/2005(H5N1) 4 A-H5N2: . ..... ... .P........... .....P........I A/emu/Texas/39442/93(H5N2) 4 A-H5N2: . ..... ... .P......V.... V....PR........ A/chicken/Puebla/231-5284/98 (H5N2) 4 A-H5N6: . ..... ... .P........... E....P......... A/mallard/Sweden/40/02(H5N6) ..............P............R.............. 2 C-H5N1: Y GVSSA WLI HPNDAAEQTKLYQ RIATRSKVNGQSGRM A/dog/Thailand-Suphanburi/KU-08/04(H5N1) ...........................E....P......... 3 E-H5N2: Y GVSSA WLI HPNDAAEQTKLYQ EIATRPKVNGQSGRM A/environment/NY/5626-2/98(H5N2) ......................R....K....S......... 1 F-H5N1: Y GVSSA WLI HPNDAAEQTRLYQ KIATRSKVNGQSGRM A/feline/Indonesia/CDC1/2006(H5N1) .......................................... 45 H-H5N1: Y GVSSA WLI HPNDAAEQTRLYQ KIATRSKVNGQSGRM A/Indonesia/CDC742/2006(H5N1) 18 H-H5N1: . ..... ... .........K... R.............. A/Viet Nam/DN-33/2004(H5N1) 15 H-H5N1: . ..... ... .........K... E....P......... A/Hong Kong/486/97(H5N1) 4 H-H5N1: . ..... ... ............. ...........N... A/Hong Kong/213/03(H5N1) ......................K....R.............. 1 L-H5N1: Y GVSSA WLI HPNDAAEQTKLYQ RIATRSKVNGQSGRM A/leopard/Suphanburi/Thailand/Leo-1/04(H5N1) ...........................K.............. 2 S-H5N1: Y GVSSA WLI HPNDAAEQTKLYQ KIATRSKVNGQSGRM A/swine/Fujian/F1/2001(H5N1) ...........................R.............. 8 T-H5N1: Y GVSSA WLI HPNDAAEQTKLYQ RIATRSKVNGQSGRM A/tiger/Thailand/SPB-1(H5N1) ...........................E....P......... 2 U-H5N2: Y GVSSA WLI HPNDAAEQTKLYQ EIATRPKVNGQSGRM A/unknown/NY/118547-11/01(H5N2) .....T....IK...P.EV..AN..G....D..PA...R..I 14 A-H6N8: Y GVTSA WIK HPPDEVEQANLYG EIADRPPANGQRGRI A/Redhead/Alberta/291/94(H6N8) 10 A-H6N1: . ...K. ... ....TN..NT... ...A..AV....... A/turkey/Germany/R30/99(H6N1) 10 A-H6N2: . ..S.. ... ....TN..NT... ...A..AV....... A/duck/Hong Kong/3600/99 (H6N2) 10 A-H6N2: . ...K. ... ....TN..NT... ...A..AV....... A/turkey/Canada/63(H6N2) 9 A-H6N1: . ...N. ... ....TTV.D.... ...A..AV....S.. A/duck/Taiwan/WB239/03(H6N1) 9 A-H6N2: . ..... ... ............. ............... A/pintail/Ohio/351/1987(H6N2) 8 A-H6N5: . ...K. ... ....TN..NT... ...A..AV....... A/turkey/Germany/R43/98(H6N5) 8 A-H6N8: . ...K. ... ....TN..NT... ...A..AV....... A/turkey/France/01062/2001(H6N8) 7 A-H6N1: . .T.RS ... ...NTD..DT... ...A..AV....... A/Teal/Hong Kong/W312/97(H6N1) 6 A-H6N1: . ...N. ... ....TTV.DT... ...A..AV....S.. A/chicken/Taiwan/1215/01(H6N1) 6 A-H6N2: . ...R. ... ....TDA.N.... ...A..VV....... A/chicken/California/905/01(H6N2) 5 A-H6N2: . ...R. ... ....TNA.N.... ..SA..VV....... A/Chicken/California/6643/2001(H6N2) 5 A-H6N2: . ..... ... ....DN....... ...S...V....... A/pintail duck/ALB/133/1978(H6N2) 5 A-H6N3: . ..... ... ............. ............... A/mallard duck/ALB/76/1985(H6N3) 5 A-H6N6: . ..... ... ............. .......V....... A/widgeon/ALB/256/1982(H6N6) 4 A-H6N2: . ..... ... ............. ...G........... A/shoveler/ALB/114/1985(H6N2) 4 A-H6N5: . ...R. ... ....TN..NT... ...A..AV....... A/Shearwater/Australia/1/72(H6N5) ....A.....LN..SESVS..TK....SPGA.--------.. 39 A-H7N2: Y GATSA WLN HSESVSEQTKLYG SPGAR--------RI A/turkey/VA/67/02(H7N2) 22 A-H7N1: . ..... ... ..G.TT....... .....PQVNGQSG.. A/turkey/Italy/977/99 (H7N1) 22 A-H7N1: . .T..T ... ..G.TT....... ...E.PQVNGQSG.. A/turkey/Italy/5074/99 (H7N1) 20 A-H7N7: . ..... ... ..G.TT....... .....PQVNGQSG.. A/turkey/Germany/R11/01(H7N7) 15 A-H7N3: . ..... ... ..G.TT....... .....PQVNGQSG.. A/turkey/Oregon/1971(H7N3) 14 A-H7N3: . ..... ... ..G.AT....... .....PQVNGQSG.. A/Turkey/Colorado/13356/91 (H7N3) 8 A-H7N2: . .T... ... ............. .T............. A/Chicken/Pennsylvania/13552-1/98 (H7N2) 8 A-H7N7: . ...N. ... ..G.TT....... .....PQVNGQSG.. A/Mallard/Sweden/93/02(H7N7) 7 A-H7N1: . ..... ... ..G.TA....... .....PQVNGQSG.. A/parrot/England/1174/94(H7N1) 7 A-H7N2: . ..... ... ..G.......... .....PQVNGQSG.. A/Chicken/Rhode Island/4328/95 (H7N2) 6 A-H7N3: . .V... ... ..G.AN....... .....PQVNGQSG.. A/turkey/Chile/4418/02(H7N3) 5 A-H7N1: . .T... ... ..G.TT....... .....PQVNGQSG.. A/turkey/Italy/4857/99 (H7N1) 4 A-H7N1: . ..... ... ..V.TT....... .L...PQVNGQSG.. A/turkey/Italy/4042/99 (H7N1) 4 A-H7N1: . ..... ... ..V.TT....... .....PQVNGQSG.. A/turkey/Italy/2715/99 (H7N1) 4 A-H7N2: . ..... ... ............. N.............. A/guineafowl/NY/4649-18/2006(H7N2) 4 A-H7N3: . ..... ... ..G.AN....... .....PQVNGQSG.. A/Quail/Arkansas/16309-7/94 (H7N3) 4 A-H7N3: . ....S ... ..G.TT...R... .....PQVNGQSG.. A/peregrine falcon/U.A.E./188/2384/98(H7N3) 4 A-H7N7: - ----- --- ..G.TT....... .....PQVNGQSG.. A/Mongolia/736/02(H7N7) ....E..........G.TA...R....N..P.PQINGQSG.. 6 E-H7N7: Y GETSA WLN HSGSTAEQTRLYG NPGPRPQINGQSGRI A/equine/Sao Paulo/1/76(H7N7) ....A......S......T...K....S..A...V....... 1 H-H7N1: Y GATSA WLS HSGSTTEQTKLYG SPGARPQVNGQSGRI A/Hong Kong/301/78(H7N1) ....T......N..........R................... 1 S-H7N7: Y GTTSA WLN HSGSTTEQTRLYG SPGARPQVNGQSGRI A/seal/Mass/1/80(H7N7) .....SK....K..PPD.K...T..K.NI.P..L.R..Q..M 7 A-H8N4: Y GTSKA WLK HPPDTKEQTTLYK NIGPRPLVRGQQGRM A/Turkey/Ontario/6118/68(H8N4) ...........T....TDTA..N..T.L.......N.L...I 39 A-H9N2: Y GTSKA WLT HPPTDTAQTNLYT LIGPRPLVNGLQGRI A/Silky Chicken/Hong Kong/SF44/99(H9N2) 17 A-H9N2: . ..... ... ............I V......A....... A/turkey/Tzur Moshe/1565/04(H9N2) 17 A-H9N2: . ..... ... ......V...... ............... A/wild duck/Nanchang/2-0480/2000(H9N2) 16 A-H9N2: . ..... ... ......E.....K V.........Q.... A/mallard/Alberta/321/88(H9N2) 14 A-H9N2: . ..... ... ......E.M...K V.........Q.... A/silky chicken/Korea/S3/03(H9N2) 13 A-H9N2: - ----- --- ----........I V......A....... A/turkey/Shadmot Dvorah/1567(H9N2) 11 A-H9N2: - ----- --- ----..E.....I V.........Q.... A/turkey/Sapir/1199/02(H9N2) 11 A-H9N2: . ..... ... ......V...... ..........Q.... A/duck/Hubei/W1/2004(H9N2) 10 A-H9N2: - ----- --- ----........I V.............. A/turkey/Kfar Vitkin/616/02 (H9N2) 10 A-H9N2: . ..... ... ............. V.........Q.... A/chicken/Shandong/7/96(H9N2) 9 A-H9N2: . ..... ... ............I V.............. A/turkey/Kfar Vitkin/616/02 (H9N2) 8 A-H9N2: . ..... ... ............. M.........Q.... A/Chicken/Shanghai/F/98(H9N2) 7 A-H9N2: - ----- --- ----........I V......A..Q.... A/turkey/Nahalal/1547/04(H9N2) 6 A-H9N2: - ----- --- -...E.......I M.........Q.... A/chicken/Iran8/01(H9N2) 6 A-H9N2: . ..... ... ............. V.............. A/quail/Nanchang/2-0460/2000(H9N2) 6 A-H9N2: . ..... ... ......E.....I V.........Q.... A/turkey/Yedidia/911/02(H9N2) 6 A-H9N2: . ..... ... ......T...... ............... A/Quail/Shanghai/8/96(H9N2) 6 A-H9N2: . ..... ... ......V...... V.........Q.... A/Chicken/Sichuan/5/97(H9N2) 6 A-H9N2: . ...R. ... ......E.....K V.........Q.... A/turkey/Germany/R33/96(H9N2) 6 A-H9N2: . ...R. ... ....Y.E.....I V.............. A/Quail/Hong Kong/SSP10/99(H9N2) 5 A-H9N1: . ..... ... .....AE.....K V.........Q.... A/mallard/Alberta/743/83(H9N1) 5 A-H9N2: . ..... ... ............I V......A..Q.... A/turkey/Gyvat Haim Ehud/1544/03(H9N2) 5 A-H9N2: . ..... ... ......E.I...K V.....P...Q.... A/chicken/SNU0146/2000(H9N2) 5 A-H9N2: . ..... ... ......T...... ..........Q.... A/chicken/Yunnan/Xie-1/1999(H9N2) 5 A-H9N2: . ..... ... ......T...... V.........Q.... A/duck/Nanjing/2/97(H9N2) 5 A-H9N2: . ...R. ... ......V..E... M.........Q.... A/Chicken/Shijiazhuang/2/99(H9N2) 4 A-H9N2: . ..... ... .....AE.....K V.........Q.... A/Duck/Hong Kong/366/78(H9N2) 4 A-H9N2: . ..... ... ............. ..........Q.... A/Chicken/Yunnan/1/99(H9N2) 4 A-H9N2: . ..... ... ......E.I...K V.........Q.... A/duck/Hokkaido/49/98(H9N2) 4 A-H9N2: . ..... ... N............ S.............. A/Duck/Shantou/2144/00(H9N2) 4 A-H9N2: . ...R. ... ......E..D..K V.........Q.... A/Turkey/Wisconsin/66(H9N2) ......R..........Y.E.....I.V.............. 3 H-H9N2: Y GTSRA WLT HPPTYTEQTNLYI VIGPRPLVNGLQGRI A/Hong Kong/1074/99(H9N2) ......K..........D...M...K...........Q.... 4 S-H9N2: Y GTSKA WLT HPPTDTEQMNLYK VIGPRPLVNGQQGRI A/swine/Korea/S83/2004(H9N2) 4 S-H9N2: . ..... ... ......V.T...T ..........LH... A/Swine/Hong Kong/9/98(H9N2) .....T.....K...SSTQ.KND..G..V.A..Q....S... 17 A-H10N: Y GTTKA WLK HPSSTQEKNDLYG VVGARPQVNGQSGRI A/Shorebird/Taiwan/31-4/99)] .............................R............ 1 M-H10N: Y GTTKA WLK HPSSTQEKNDLYG VVRARPQVNGQSGRI /Mink/4(HA)/H10N4/Sweden/1984 ....V.A....I...ATLK.HQ...K.EIST..K....A..M 12 A-H11N: Y GVTAA WLI HPATLKEHQDLYK EISTRPKVNGQAGRM A/swan/Shimane/48/1997(H11N2) ....TSK....T...P.SD.QVK....N.GP..L.R..Q... 6 A-H12N: Y GTSKA WLT HPPTSDEQVKLYK NIGPRPLVRGQQGRM A/ruddy turnstone/DE/97/2000(H12N5) .....TS...FI...VSV..TKT..V.ET.V..GYN..RSW. 3 A-H13N: Y GTTSA WFI HPVSVDETKTLYV ETGVRPGYNGQRSWM A/Gull/Maryland/704/77(H13N6) ....SS....LK...S.DN.QTD..K.NI.S..RVRN.SGRI 1 A-H14N: Y GSSSA WLK HPSSDNEQTDLYK NIGSRPRVRNQSGRI A/mallard duck/Astrakhan/263/1982(H14N5) ....AT.....S..S..LD..NK..G.SP.A..K.NG.A... 5 A-H15N: Y GATSA WLS HSSSLDEQNKLYG SPGARPKVNGQAGRI A/wedge-tailed shearwater/Western Australia/2576/1979(H15N9) .F..T.AS...V..PDTEATA....V.EI.T.-IGD..RSWM 3 A-H16N: F GTTAS WLV HPDTEATANKLYV EIGTR-IGDGQRSWM A/black-headed gull/Sweden/4/99(H16N3)
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