mutation table experiments
Code:
0000000000000000000000000000000000000000000000000000000000000000000000000000000000011111111111111111111111111111111111111111111111111 0000000111111111112223333333344444444444455555555666666666666677777788888889999999900000011111111122222223333334444444555555555666666 2334799014466778993672334578923445567788913344466000234455568813556911456890133567801225801247788901455890022330014578113366679236689 5072839240135289145931030290942463962736561403905178190647834775342906726810534568182376049501925162817163569353860838280603674905831 -codon-position-------------------------------1 1 2 1 11 2212 1112 1 2 11 21112 11 1 1 1 1 2 11 1 1 1 1 1 21 21 1 2 ---Index--------------------------------------CTGCGCACATTACCAGTCCCCTATGCTCAACTTATGGACCAAGCACTGGAGCTTGGGGTAGGTCAGAGTCATTTGGCTAAACAGGTTTGTGGCGTCATGTCGAACATGGCAGCCCCGCACAAAGGGGGGCTGT 1 >A/******/index/2009/02/01 ..................................................................................................................................... 2 >A/CA/VRDL64,2009/08/10 ..........................................................A..................................A..................T.................... 3 >A/CA/VRDL67,2009/08/18 ..........................................................A..................................A..................T.................... 4 >A/Singapore/GP3084,2009/08/18 ..........................................................A..................................A..................T.................... 5 >A/CA/VRDL70,2009/08/27 ..........................................................A..................................A..................T.................... 6 >A/CA/VRDL72,2009/09/01 ..........................................................A..................................A..................T.................... 7 >A/Singapore/GP3491,2009/09/01 ..........................................................A..................................A..................T.................... 8 >A/Singapore/ON2018,2009/09/04 ..........................................................A..................................A..................T.................... 9 >A/Texas/45062584,2009/09/06 ..........................................................A..................................A..................T.................... 10 >A/Wisconsin/629-D02133,2009/09/09 ..........................................................A..................................A..................T.................... 11 >A/Singapore/ON2063,2009/09/10 ..........................................................A..................................A..................T.................... 12 >A/CA/VRDL78,2009/09/22 ..........................................................A..................................A..................T.................... 13 >A/CA/VRDL80,2009/10/01 ..........................................................A..................................A..................T.................... 14 >A/Wisconsin/629-D00834,2009/10/05 ..........................................................A..................................A..................T.................... 15 >A/Singapore/ON2193,2009/10/08 ..........................................................A..................................A..................T.................... 16 >A/Norway/3797,2009/10/12 ..........................................................A..................................A..................T.................... 17 >A/San Diego/INS52,2009/10/12 ..........................................................A..................................A..................T.................... 18 >A/Catalonia/S1515,2009/10/13 --------..................................................A..................................A..................T................---- 19 >A/San Diego/INS102,2009/10/14 ..........................................................A..................................A..................T.................... 20 >A/NY/5161,2009/10/16 ..........................................................A..................................A..................T.................... 21 >A/Texas/46182018,2009/10/18 ..........................................................A..................................A..................T.................... 22 >A/Catalonia/S1554,2009/10/20 --------..................................................A..................................A..................T.................--- 23 >A/San Diego/INS16,2009/10/20 ..........................................................A..................................A..................T.................... 24 >A/San Diego/INS61,2009/10/21 ..........................................................A..................................A..................T.................... 25 >A/Texas/46221665,2009/10/22 ..........................................................A..................................A..................T.................... 26 >A/Catalonia/S1668,2009/11/02 --------..................................................A..................................A..................T.................--- 27 >A/Catalonia/S1686,2009/11/03 --------..................................................A..................................A..................T................---- 28 >A/NY/5916,2009/11/06 ..........................................................A..................................A..................T.................... 29 >A/Catalonia/S1744,2009/11/09 --------..................................................A..................................A..................T..................-- 30 >A/San Diego/INS74,2009/11/12 ..........................................................A..................................A..................T.................... 31 >A/NY/6293,2009/11/16 ..........................................................A..................................A..................T.................... 32 >A/Catalonia/S1938,2009/11/23 --------..................................................A..................................A..................T.................--- 33 >A/NY/6772,2009/12/07 ..........................................................A..................................A..................T.................... 34 >A/NY/6806,2009/12/07 ..........................................................A..................................A..................T.................... 35 >A/Catalonia/NS092145714,2009/12/10 --------..................................................A..................................A..................T..................-- 36 >A/Catalonia/S2118,2009/12/14 --------..................................................A..................................A..................T................---- 37 >A/CA/VRDL61,2009/07/27 ..........................................................A..................................A.........G........T.................... 38 >A/Managua/2093.01,2009/08/18 ..........................................................A..................................A............C.....T.................... 39 >A/Managua/3244.01,2009/08/18 ..........................................................A..................................A............C.....T.................... 40 >A/Managua/4218.01,2009/08/17 ..........................................................A..................................A............C.....T.................... 41 >A/CA/VRDL96,2009/10/29 ..........................................................A..................................A............C.....T..........A......... 42 >A/ShandongTaishan/1616,2009/12/07 -------------------------.................................A..................................A......--------------------------------- 43 >A/Singapore/ON1868,2009/08/22 .........................................................AA..................................A..................T.................... 44 >A/Texas/45093846,2009/09/09 ..........................................................A..................................A.....C............T.................... 45 >A/Singapore/ON2090,2009/09/14 ..........................................................A..................................A.............A....T.................... 46 >A/Singapore/ON2083,2009/09/13 ..........................................................A..................................A.............A....T.................... 47 >A/Murmansk/CRIE-PAI,2009/09/17 ..........................................................A..................................A..................T.................C.. 48 >A/Murmansk/CRIE-DII,2009/09/21 ..........................................................A..................................A..................T.................C.. 49 >A/Murmansk/CRIE-JAS,2009/09/21 ..........................................................A..................................A..................T.................C.. 50 >A/Murmansk/CRIE-LKA,2009/09/21 ..........................................................A..................................A..................T.................C.. 51 >A/Malaysia/9254,2009/08/11 ..........................................................A..................................A..................T.................C.. 52 >A/Catalonia/S1650,2009/10/28 ---------.................................................A..................................A..................T................---- 53 >A/Catalonia/S2144,2009/12/21 ---------.................................................A..................................A..................T.................--- 54 >A/Taiwan/156,2009/09/18 ..........................................................A..................................A....A.............T.................... 55 >A/Taiwan/167,2009/09/18 ..........................................................A..................................A....A.............T.................... 56 >A/Taiwan/177,2009/09/18 ..........................................................A..................................A....A.............T.................... 57 >A/Taiwan/206,2009/09/18 ..........................................................A..................................A....A.............T.................... 58 >A/Taiwan/143,2009/09/15 ..........................................................A..................................A....A.............T.................... 59 >A/CA/VRDL76,2009/09/21 ..........................................................A...............A..................A....A.............T.................... 60 >A/Wisconsin/629-D01749,2009/10/09 ..........................................................A..................................A..................T...........A........ 61 >A/Wisconsin/629-S1431,2009/10/27 ..........................................................A..................................A..................T...........A........ 62 >A/Wisconsin/629-D00859,2009/11/19 ..........................................................A..................................A..................T...........A........ 63 >A/Wisconsin/629-D01015,2009/09/29 ..........................................................A..................................A......T...........T...........A........ 64 >A/Wisconsin/629-D00692,2009/10/15 ..........................................................A..................................A......T...........T...........A........ 65 >A/Wisconsin/629-D02090,2009/10/09 ........................................G.................A..................................A..................T...........A........ 66 >A/Wisconsin/629-D00830,2009/10/12 ........................................G.................A..................................A..................T...........A........ 67 >A/Wisconsin/629-S1417,2009/10/26 ........................................G.................A..................................A..................T...........A........ 68 >A/Wisconsin/629-D01570,2009/11/05 ........................................G.................A..................................A..................T...........A........ 69 >A/Wisconsin/629-D00557,2009/10/10 ........................................G.................A..................................A..................T...........A........ 70 >A/Wisconsin/629-D01904,2009/12/14 ........................................G.................A..................................A..................T...........A........ 71 >A/Wisconsin/629-D01038,2009/12/16 ........................................G.................A..................................A..................T...........A........ 72 >A/Wisconsin/629-S1348,2009/10/14 ..........................................................A..................................A..................T......T....A........ 73 >A/Wisconsin/629-S1350,2009/10/14 ..........................................................A..................................A..................T......T....A........ 74 >A/Wisconsin/629-D00911,2009/11/15 ....A.....................................................A..................................A..................T...........A........ 75 >A/Madrid/RC10,2009/10/10 ---------G................................................A..................................A..................T-------------------- 76 >A/Texas/45071524,2009/09/07 ..........................................................A..............C...................A..................T...........A........ 77 >A/Texas/45103998,2009/09/10 ..........................................................A..............C...................A..................T...........A........ 78 >A/CA/VRDL91,2009/10/17 ..........................................................A............................C.....A..................T.................... 79 >A/NY/5173,2009/10/17 .........................T................................A..................................A..................T.................... 80 >A/NY/5620,2009/11/02 .........................T.....................A..........A..................................A..................T.................... 81 >A/Boston/154,2009/08/18 ...................A...........................A..........A..................................A..................T.................... 82 >A/San Diego/INS104,2009/10/20 ..........................................................A..................................A..................T.................... 83 >A/San Diego/INS34,2009/10/21 ..........................................................A..................................A..................T.................... 84 >A/Singapore/ON2241,2009/10/21 ..........................................................A..................................A..................T.................... 85 >A/Wash.DC/INS27,2009/10/21 ..........................................................A................A.................A..................T.................... 86 >A/NY/5271,2009/10/22 ..................................................A.......A..................................A..................T.................... 87 >A/Texas/46222134,2009/10/22 ..................................................A.......A..................................A..................T.................... 88 >A/San Diego/INS03,2009/10/12 ..................................................A.......A.............C....................A..................T.................... 89 >A/CA/VRDL97,2009/10/29 ..................................................A.......A.............................A....A..................T.................... 90 >A/Ontario/328474,2009/11/17 .........................................G........A.......A..................................A..................T.................... 91 >A/Texas/46193311,2009/10/19 ..................................................A.......A..................................A..................T.................... 92 >A/Texas/46241654,2009/10/24 ..........................................................A..................................A..................T.................... 93 >A/San Diego/INS65,2009/10/28 ..........................................................A..................................A..................T.................... 94 >A/San Diego/INS42,2009/11/04 ............T.............................................A..................................A..................T.................... 95 >A/San Diego/INS48,2009/11/04 ..........................................................A..................................A..................T.................... 96 >A/Texas/JMS358,2009/11/04 ..........................................................A..A...............................A..................T.................... 97 >A/Singapore/GP4247,2009/11/06 ......G...................................................A..................................A..................T.................... 98 >A/Singapore/ON2271,2009/11/03 ......G...................................................A..................................A....................................... 99 >A/Guangdong/1266,2009/11/22 ..........................................................A...............................A..A....................................... 100 >A/Guangdong/1275,2009/11/20 ..........................................................A...............................A..A...........G......T.................... 101 >A/Guangdong/1270,2009/11/21 ..........................................................A...............................A..A...........G......T.................... 102 >A/Guangdong/1260,2009/11/20 ..........................................................A...............................A..A...........G......T.................... 103 >A/San Diego/INS69,2009/11/05 ..........................................................A.............C.................A..A..................T.................... 104 >A/Wisconsin/629-D00337,2009/12/15 ..........................................................A.............C....................A..................T.................... 105 >A/Wisconsin/629-D01014,2009/11/08 ..........................................................A..................................A..................T............A....... 106 >A/NY/6072,2009/11/09 ..............................................A...........A..................................A..................T.................... 107 >A/NY/6300,2009/11/17 ..............................................A...........A..................................A..................T.................... 108 >A/NY/5667,2009/10/13 ..............................................A...........A..................................A..................T.................... 109 >A/Singapore/GP4326,2009/11/13 ........................A.................................A..................................A..................T.................... 110 >A/Singapore/GP4581,2009/12/02 ........................A.................................A..................................A..................T.................... 111 >A/Wisconsin/629-S1384,2009/10/19 ........................A.................................A............C.....................A..................T.................... 112 >A/NY/5199,2009/10/20 ........................A.................................A............C.....................A..................T.................... 113 >A/Wisconsin/629-D00151,2009/11/05 ........................A.................................A............C.....................A..................T.................... 114 >A/Wisconsin/629-D01466,2009/11/08 ........................A.................................A............C.....................A..................T.................... 115 >A/Wisconsin/629-D02392,2009/11/08 ........................A.................................A............C.....................A..................T.................... 116 >A/Wisconsin/629-D02448,2009/11/23 ........................A.................................A............C.....................A..................T.................... 117 >A/NY/0357,2009/12/30 ........................A.................................A............C.....................A..................T.................... 118 >A/NY/1680,2010/01/12 ........................A.................................A............C.....................A..................T.................... 119 >A/NY/2175,2010/01/19 ........................A.................................A............C.....................A..................T.................... 120 >A/NY/2598,2010/01/20 ........................A.................................A............C.....................A..................T.................... 121 >A/NY/2971,2010/01/23 ........................A.................................A............C.....................A..................T.................... 122 >A/NY/3236,2010/01/26 ........................A.................................A............C.....................A..................T.................... 123 >A/Ankara/22,2009/08/ ........................A.................................A............C...T.................A..................T.................... 124 >A/Ankara/20,2009/10/ ........................A.................................A............C...T.................A..................T.................... 125 >A/Ankara/21,2009/10/ ........................A.................................A............C...T.................A..................T.................... 126 >A/Wisconsin/629-D01752,2009/12/15 ........................A.................................A............C...T.................A..................T.................... 127 >A/Madrid/INS184,2009/12/15 ........................A.................................A............C...T.................A..................T.................... 128 >A/Wisconsin/629-D01351,2009/10/01 ........................A.................................A............C.....................A..................T.................... 129 >A/NY/4985,2009/10/05 ........................A.................................A......A.....C.....................A..................T.................... 130 >A/NY/4984,2009/10/06 ........................A.................................A......A.....C.....................A..................T.................... 131 >A/Wisconsin/629-S1388,2009/10/19 ........................A.................................A............C.....................A..................T.................... 132 >A/NY/5221,2009/10/20 ........................A........T........................A............C.....................A..................T.................... 133 >A/Wash.DC/INS33,2009/10/26 ........................A........T........................A............C.....................A..................T.................... 134 >A/Wash.DC/INS19,2009/10/27 ........................A........T........................A............C.....................A..................T.................... 135 >A/Wash.DC/INS45,2009/11/03 ........................A........T........................A............C.....................A..................T.................... 136 >A/NY/5886,2009/11/09 ........................A........T........................A............C.....................A..................T.................... 137 >A/NY/6019,2009/11/09 ........................A........T........................A............C.....................A..................T.................... 138 >A/NY/6213,2009/11/16 ........................A........T........................A............C.....................A..................T.................... 139 >A/NY/6771,2009/12/07 ........................A........T........................A............C.....................A..................T.................... 140 >A/NY/6907,2009/12/08 ........................A........T........................A............C.....................A..................T.................... 141 >A/NY/6977,2009/12/11 ........................A........T........................A............C.....................A..................T.................... 142 >A/Texas/JMS415,2010/02/06 ........................A........T........................A............C.....................A..................T.................... 143 >A/Wash.DC/INS25,2009/10/26 ............T...........A........T........................A............C.....................A..................T.................... 144 >A/NY/5782,2009/11/03 ........................A........T........................A............C.....................A..................T.................... 145 >A/Wash.DC/INS44,2009/11/03 ........................A........T........................A............C.....................A..................T.................... 146 >A/NY/6182,2009/11/16 ........................A........T........................A............C.....................A.................AT.................... 147 >A/NY/6868,2009/11/23 ......................T.A........T........................A............C.....................A..................T.................... 148 >A/NY/5130,2009/10/13 ......................T.A........T........................A............C.....................A..................T.................... 149 >A/NY/6571,2009/11/26 ........................A........T........................A............C.....................A..................TT................... 150 >A/NY/5976,2009/11/09 ................A.......A........T........................A............C.....................A..................TT................... 151 >A/Wisconsin/629-S1397,2009/10/21 ................A.......A.................................A............C....A................A..................T.................... 152 >A/Wisconsin/629-D00935,2009/12/02 ................A.......A.................................A............C....A................A..................T.................... 153 >A/Wisconsin/629-D02299,2009/12/02 ................A.......A.................................A............C....A................A..................T.................... 154 >A/Wisconsin/629-S1398,2009/10/21 ................A.......A.................................A............C....A................A..................T.................... 155 >A/Wisconsin/629-D01591,2009/12/07 ................A.......A..........T......................A............C....A................A..................T.................... 156 >A/Wisconsin/629-D00147,2009/12/09 ................A.......A..........T......................A............C....A................A..................T.................... 157 >A/NY/2963,2010/01/22 ................A.......A.................................A............C....A................A..................T.................... 158 >A/NY/5276,2009/10/21 ........................A.............................T...A............C.....................A..................T.................... 159 >A/Wisconsin/629-D00780,2009/12/08 ........................A.............................T...A............C.....................A..................T.................... 160 >A/Wisconsin/629-D02018,2009/10/23 ........................A.................................A............C.....................A..................T.................... 161 >A/Wash.DC/INS29,2009/10/26 ........................A.................................A............C.....................A..................T.................... 162 >A/Pensacola/INS108,2009/11/17 ........................A.................................A............C.....................A.......A..........T.................... 163 >A/Pensacola/INS109,2009/11/17 ........................A.................................A............C.....................A.......A..........T.................... 164 >A/Pensacola/INS37,2009/11/04 ........................A.................................A............C.....................A.......A..........T.................... 165 >A/Pensacola/INS38,2009/11/04 ........................A.................................A............C.....................A.......A..........T.................... 166 >A/NY/6546,2009/11/23 .......T................A.................................A............C.....................A..................T.................... 167 >A/NY/6214,2009/11/16 ..A....T................A.................................A............C.....................A..................T.................... 168 >A/NY/6810,2009/11/25 ..A....T................A.................................A............C.....C...............A..................T.................... 169 >A/NY/6808,2009/11/29 .......T................A.........C.......................A............C.....................A..................T.................... 170 >A/Texas/JMS388,2009/12/11 ........................A.................................A............C.....................A..................T.................... 171 >A/Terrassa/INS175,2009/12/23 ........................A.................................A............C.....................A..................T.................... 172 >A/NY/6110,2009/11/08 ........................A.................................A............C................A....A..................T.................... 173 >A/Singapore/ON2286,2009/11/10 ........................A.................................A..................................A..................T.................... 174 >A/Singapore/ON2308,2009/11/16 ........................A.................................A..................................A..................T.................... 175 >A/NY/6346,2009/11/18 ..........................................................A..................................A..................T.................... 176 >A/Bonn/INS128,2009/11/20 ..........................................................A..................................A..................T.................... 177 >A/Guangdong/1262,2009/11/22 ..........................................................A..................................A..................T.........G.......... 178 >A/Ghana/N12981,2009/10/ .............T............................................A..................................A..................T.........G.......... 179 >A/NY/6473,2009/11/22 ..........................................................A..................................A..................T.................... 180 >A/Texas/JMS377,2009/11/26 ..........................................................A.........................A........A..................T.................... 181 >A/Texas/JMS384,2009/11/30 ..........................................................A.........................A........A..................T.................... 182 >A/Texas/JMS375,2009/11/23 ..........................................................A.........................A....C...A..................T.................... 183 >A/Sw/Italy/290271,2009/11/27 ..........................................................A.......................G.A........A..................T.................... 184 >A/Athens/INS163,2009/12/20 ..........................................................A.......................G..........A..................T.................... 185 >A/NY/INS151,2009/12/11 ..........................................................A.......................G..........A..................T.................... 186 >A/Guangdong/1738,2009/11/27 ..........................................................A..................................A..................T.................... 187 >A/NY/7036,2009/12/16 ..........................................................A..................................A..................T........G........... 188 >A/Texas/JMS392,2009/12/25 ..........................................................A..................................A..................T.................... 189 >A/NY/0352,2009/12/27 ..........................................................A..................................A..................T.................... 190 >A/NY/2648,2010/01/22 ..........................................................A..................................A..................T.................... 191 >A/NY/3251,2010/01/26 ..........................................................A..................................A..........T.......T.................... 192 >A/NY/3250,2010/01/27 ..........................................................A..................................A..........T.......T.................... 193 >A/Singapore/ON0801,2009/07/01 ..........................................................A..................................A..................T.................... 194 >A/NY/4565,2009/07/08 .............................................................................................A..................T.................... 195 >A/CA/VRDL85,2009/10/09 .....................................G.T..................A..................................A..................T.................... 196 >A/San Diego/INS02,2009/10/12 .....................................G.T..................A..................................A..................T.................... 197 >A/San Diego/INS05,2009/10/12 .....................................G.T..................A..................................A..................T.................... 198 >A/San Diego/INS06,2009/10/12 .....................................G.T..................A..................................A..................T.................... 199 >A/San Diego/INS53,2009/10/12 .....................................G.T..................A..................................A..................T.................... 200 >A/San Diego/INS08,2009/10/13 .....................................G.T..................A..................................A..................T.................... 201 >A/San Diego/INS10,2009/10/13 .....................................G.T..................A..................................A..................T.................... 202 >A/San Diego/INS60,2009/10/19 .....................................G.T..................A..................................A..................T.................... 203 >A/San Diego/INS04,2009/10/12 .....................................G.T..................A..................................A..................T.................... 204 >A/San Diego/INS51,2009/10/12 ...T.................................G.T..................A..................................A..................T.................... 205 >A/San Diego/INS09,2009/10/13 ...T.................................G.T..................A..................................A..................T.................... 206 >A/San Diego/INS55,2009/10/14 .....................................G.T..................A..................................A..................T.................... 207 >A/San Diego/INS57,2009/10/15 .....................................G.T..................A..................................A..................T.................... 208 >A/San Diego/INS103,2009/10/19 .....................................G.T..................A..................................A..................T.................... 209 >A/Wisconsin/629-S1425,2009/10/27 .....................................G....................A..................................A..................T..............A..... 210 >A/San Diego/INS11,2009/10/14 ..........................................................A..................................A..............A...T.................... 211 >A/Wash.DC/INS24,2009/10/15 ..........................................................A.......G..........................A..................T.................... 212 >A/Wash.DC/INS18,2009/10/28 ..........................................................A..................................A..................T.................... 213 >A/Wisconsin/629-D00938,2009/11/02 .....A....................................................A..................................AC.................T.................... 214 >A/Beijing/22808,2009/12/ ..........................................................A..................................AC.................T.................... 215 >A/Singapore/ON2269,2009/11/03 ..........................................................A..................................A..................T.................... 216 >A/Wash.DC/INS46,2009/11/03 ..........................................................A..................................A..................T.T.............A.... 217 >A/NY/6909,2009/11/29 ..........................................................A..................................A..................T.T.............A.... 218 >A/NY/6864,2009/12/02 ..........................................................A..................................A..................T.T.............A.... 219 >A/NY/4995,2009/10/04 ............Y.............................................A..................................A..................T.T.............A.... 220 >A/NY/6675,2009/11/24 ..........................................................A..................................A..................T.T.............A.... 221 >A/Aalborg/INS133,2009/12/02 ..........................................................A..................................A..................T..T............A.... 222 >A/Singapore/GP4556,2009/12/01 ..........................................................A..................................A..................T..T................. 223 >A/Guangdong/1078,2009/11/17 ..........................................................A..................................A..................T.............A..T... 224 >A/CA/VRDL58,2009/07/21 ..........................................................A..................................A..................T.............A...... 225 >A/Catalonia/S1756,2009/11/09 --------..................................................A..................................A..................T..................-- 226 >A/Catalonia/S2056,2009/12/02 --------..................................................A..................................A..................T.................--- 227 >A/Catalonia/S2060,2009/12/03 ---------.................................................A........................A.........A..................T.................--- 228 >A/Singapore/ON2313,2009/11/17 ..........................................................A......................T...........A..................T.................... 229 >A/Texas/JMS409,2010/01/20 ..........................................................A......................T...........A..................T.................... 230 >A/Guangdong/1241,2009/11/19 ..................T.......................................A..................................A................T.T.................... 231 >A/Guangdong/1249,2009/11/20 ..................T.......................................A..................................A................T.T.................... 232 >A/Guangdong/1252,2009/11/19 ..................T.......................................A..................................A.A..............T.T.................... 233 >A/Guangdong/1250,2009/11/20 ..................T.......................................A..................................A................T.T.................... 234 >A/Sw/IL/10-001551-1,2009/12/20 .....................................................C....A.................................TA..................T.................... 235 >A/Sw/IL/10-001551-2,2009/12/20 ..........................................A..........C....A.................................TA..................T.................... 236 >A/Pune/NIV20007,2009/12/ ........G.............................T...................A.................................TA...C..............T.................... 237 >A/Texas/JMS401,2010/01/03 ........G.................................................A..................................A..................T.................... 238 >A/NY/7107,2009/12/23 ..........................................................A..................................A..................T.................... 239 >A/Nagasaki/HA-10-7,2010/01/12 ................................A.........................A.A................................A..................T.................... 240 >A/Nagasaki/HA-10-15,2010/02/01 ................................A.........................A.A................................A..................T.................... 241 >A/Nagasaki/HA-10-17,2010/02/08 ................................A.........................A.A................................A..................T.......T...........A 242 >A/Nagasaki/HA-10-25,2010/03/08 ...............................C...........T..............A..................................A.........G........T...................A 243 >A/Nagasaki/HA-10-21,2010/02/22 ...............................C...........T..............A..................................A.........G........T....A............... 244 >A/Nagasaki/HA-10-18,2010/02/15 ...............................C...........T..............A..................................A.........G........T....A..T............ 245 >A/NY/6292,2009/11/17 ....................A.....................................A..................................A..................T....A............... 246 >A/Singapore/GP4381,2009/11/18 ..............G.....A.....................................A..................................A..................T.................... 247 >A/Singapore/GP3441,2009/08/31 ..........................................................A..................................A..................T.................... 248 >A/Afghanistan/N10767,2009/09/ ..............................T.........................A.A.....G............................A..................T.................... 249 >A/Afghanistan/N10974,2009/09/ ..............................T.........................A.A.....G............................A..................T.................... 250 >A/Kuwait/N13111,2009/09/23 ..............................T.........................A.A.....G............................A..................T.................... 251 >A/NY/INS150,2009/12/07 .............T....T.....................................A.A.....G............................A..................T.................... 252 >A/CA/VRDL36,2009/09/24 ..........................................................A....Y.............................A..................T.................... 253 >A/Singapore/GP4309,2009/11/12 ..........................................................A....T.............................A..................T.................... 254 >A/Singapore/ON2172,2009/10/01 ...T.......G..............................................A..................................A..................T.................... 255 >A/Gvardeyskiy/07,2009/12/ ----------------------------............G.................A..........................C.......A..................T.............A...... 256 >A/CA/VRDL86,2009/10/09 ........................................G.................A..................................A..................T.................... 257 >A/Texas/46193632,2009/10/19 ..........C.........................A.....................A..................................A..................T.................... 258 >A/Egypt/N14645,2009/11/ ..........C...................................C...........A..................................A..................T.........G.......... 259 >A/NY/6257,2009/11/15 .............................G................A...........A..................................A..................T.................... 260 >A/Singapore/GP999,2010/02/26 .............................G............................A..................................A..................T..........A......... 261 >A/Guangdong/5024,2009/10/20 ..........................................................A..................................A..................T.................... 262 >A/ferret/OR/27004-3,2009/10/23 .....A.................C..................................A..................................A..G...............T.................... 263 >A/ferret/OR/27004,2009// .....A.................C..................................A..................................A..G...............T.................... 264 >A/Catalonia/S1672,2009/11/02 ---------.................................................A...A............A..G..............A..................T...T............---- 265 >A/Catalonia/S2169,2009/12/23 --------..........................C.......................A..................................A..................T.................--- 266 >A/San Diego/INS63,2009/10/26 ..........................................................A.........C.....A............C.....A..................T.................... 267 >A/Texas/JMS403,2010/01/04 ..........................................................A.........C.....A............C.....A..................T.................... 268 >A/Texas/JMS389,2009/12/16 ..........................................................A.........C.....A............C.....A..................T.................... 269 >A/Texas/JMS402,2010/01/04 ..........................................................A.........C.....AA...........C.....A..................T.................... 270 >A/CA/VRDL13,2010/01/25 ....................................................C.....A.........C.....A............C.....A..................T.................... 271 >A/CA/VRDL11,2010/01/26 ....................................................C.....A.........C.....A............C.....A..................T.................... 272 >A/Texas/JMS406,2010/01/10 .................................................G..C.....A.........C.....A............C.....A..................T..................A. 273 >A/Texas/JMS405,2010/01/09 .................................................G........A.........C.....A............C.....A..................T..................A. 274 >A/cat/OR/29573,2009/11/09 ..........................................................A.........C.....A............C.....A..................T.................... 275 >A/Texas/JMS397,2009/12/30 ..........................................................A.........C.....A............C..A..A.....C............T.................... 276 >A/Texas/JMS398,2009/12/30 ..........................................................A.........C.....A............C..A..A.....C............T.................... 277 >A/Texas/JMS399,2009/12/31 ..........................................................A.........C.....A............C..A..A.....C............T.................... 278 >A/Texas/JMS400,2009/12/31 ..........................................................A.........C.....A............C..A..A.....C............T.................... 279 >A/Texas/JMS410,2010/01/22 ....A.......................................C.............A.........C.....A............C.....A..................T.................... 280 >A/CA/VRDL10,2010/02/11 ..........................................................A.........C..................C.....A..................T.................... 281 >A/CA/VRDL100,2009/11/05 ............................G.....................A.......AG.................................A..................T.................... 282 >A/CA/VRDL14,2010/01/25 ............................G.....................A.......AG.................................A..................T...T................ 283 >A/CA/VRDL12,2010/01/27 ............................G.....................A.......AG.................................A..................T...T................ 284 >A/NY/7020,2009/12/14 ............................................G.....A.......A..................................A..................T.................... 285 >A/Nagasaki/HA-10-13,2010/01/18 ......G...........................................A.......A..................................A..................T.................... 286 >A/San Diego/INS70,2009/11/05 ..........................................................A..................................A..................T...A................ 287 >A/Texas/JMS369,2009/11/13 ..........................................................A..................................A..................T.....C.....A........ 288 >A/Wisconsin/629-D01582,2009/11/17 .........................................................AA...........T......................A..................T...........A........ 289 >A/Wisconsin/629-D00672,2009/12/08 .........................................................AA...........T......................A..................T...........A........ 290 >A/Wisconsin/629-D00996,2009/12/16 .........................................................AA...........T......................A..................T...........A........ 291 >A/Wisconsin/629-D01528,2009/11/29 .........................................................AA...........T......................A..................T...........A........ 292 >A/NY/6668,2009/11/30 ..........................................................A..................................A..................T...........A........ 293 >A/Texas/46223444,2009/10/22 ..........................................................A..................................A..................T...........A........ 294 >A/Madrid/RC9,2009/11/03 -----------........................................T......A....................G.............A.............A....T-------------------- 295 >A/Hamburg/INS92,2009/12/04 ..........................................................A....................G.............A..................T.................... 296 >A/Guangdong/1240,2009/11/19 .C........................................................A..................................A..................T.................... 297 >A/Singapore/ON2400,2009/12/11 .C.......C...................................A............A..................................A..................T.................... 298 >A/Singapore/KK066,2010/01/27 .C.......C...................................A............A..................................A..................T.................... 299 >A/Singapore/GP562,2010/02/02 TC.......C...................................A............A..................................A..................T.................... 300 >A/Singapore/GP737,2010/02/12 .C.......C...................................A............A..................................A..................T.................... 301 >A/Singapore/KK081,2010/02/12 .C.......C.....A.............................A.....T......A..................................A..................T.................... 302 >A/Guangdong/1271,2009/11/19 ..........................................................A..A...............................A..................T.................... 303 >A/Texas/JMS378,2009/11/26 .................T...C....................................A..................................A..................T.....C.............. 304 >A/Texas/JMS379,2009/11/26 .................T...C....................................A..................................A..................T.....C.............. 305 >A/Warsaw/INS100,2009/12/07 ..........................................................A.........................A........A.........G........T.................... 306 >A/Athens/INS85,2009/12/13 ..........................................................A.........................A........A.........G........T.................... 307 >A/Pune/NIV21123,2009/12/ ..........................................................A..................................A.........G........T.........G.......... 308 >A/Singapore/ON2230,2009/10/19 ...........G....................................A.........A..................................A..................T.........G.......... 309 >A/Singapore/GP4697,2009/12/10 ........................A.................................A..................................A..................T.................... 310 >A/NY/6775,2009/12/05 ........................A........T..A.....................A............C.....................A..................T.................... 311 >A/NY/6949,2009/12/14 ........................A.....T..T........................A............C.....................A..................T.................... 312 >A/NY/6976,2009/12/14 ........................A.....T..T........................A............C.....................A..................T.................... 313 >A/NY/7236,2009/12/28 ........................A........T........................A............C.....................A..................T.................... 314 >A/NY/1796,2010/01/15 ........................A........T........................A............C.....................A..................T.A.................. 315 >A/Wash.DC/INS21,2009/10/30 ........................A........T........................A............C....................TA.........G........T.................... 316 >A/NY/6776,2009/12/04 ....A...................A........T.......G................A............C.....................A..................T.................... 317 >A/NY/6903,2009/12/10 ..........A.............A........T........................A............C.....................A..................T.................... 318 >A/NY/0259,2009/12/26 ........................A........T........................A............C.....................A..................T.................... 319 >A/NY/2876,2010/01/20 ........................A........T........................A............C.....................A..................T.................... 320 >A/Wash.DC/INS28,2009/10/23 T.......................A........T..................C.....A............C.....................A..................T.................... 321 >A/Guangdong/1070,2009/11/21 T...................................................C.....A..................................A..................T........G.......T... 322 >A/Guangdong/1071,2009/11/18 T...................................................C.....A..................................A........G.........T........G.......T... 323 >A/Guangdong/1075,2009/11/19 T....T....................................................A..................................A........G.........T............A...T... 324 >A/Guangdong/1069,2009/11/20 T.........................................................A..........T.......................A........GG........T................T... 325 >A/Perm/CRIE-ZTS,2009/11/30 ..........................................................A..........T.......................A..................T.................C.. 326 >A/CA/VRDL99,2009/11/05 .......................C..............T...................A..................................A..............A...T.................... 327 >A/Cologne/INS136,2009/11/30 ..........................................................A...A..............................A.................AT.................... 328 >A/NY/2960,2010/01/26 ........................A.................................A............C.....................A..................T.................... 329 >A/Wisconsin/629-D00748,2009/09/21 ........................A.CT..............................A............C...................A.A..................T.................... 330 >A/Wisconsin/629-D01102,2009/10/06 ........................A.CT..............................A............C...................A.A...............T..T.................... 331 >A/Wisconsin/629-D02370,2009/11/05 ........................A.CT..............................A............C...................A.A...............T..T.................... 332 >A/NY/6669,2009/12/01 ........................A................................AA............C......G..............A..................T.................... 333 >A/Berlin/INS170,2009/12/11 ........................A.................................A............C.....................A..................T........G........... 334 >A/Athens/INS166,2009/12/26 ........................A.................................A............C...T.................A..................T.................... 335 >A/Wisconsin/629-D01473,2009/12/07 ........................A.........................A.......A............C...T................TA..................T.................... 336 >A/NY/98,2010/01/18 ........................A.................................A............C.....................A..................T.................... 337 >A/NY/6079,2009/10/16 ........................A.................................A..A...A.....C.....................A..................T.................... 338 >A/NY/3230,2010/01/25 ........................A.................................A....T.......C.....................A..................T.................... 339 >A/CA/VRDL81,2009/10/01 ............T...........A...................................A................................A..................T.................... 340 >A/Singapore/TT017,2010/01/08 ............T.............................................A..................................A..................T........G......A.... 341 >A/Guangdong/1083,2009/11/24 ..........................................................A..................................A..................T................T... 342 >A/Texas/JMS381,2009/11/28 ...............A.........................................AA..........................CC......A.T................T.................... 343 >A/Texas/JMS382,2009/11/28 ...............A.........................................AA..........................CC......A.T................T.................... 344 >A/Singapore/ON2407,2009/12/13 .........................................................AA..................................A..................T.................... 345 >A/Singapore/ON2416,2009/12/15 ............................................G.............A..................................A..................T.................... 346 >A/Singapore/GP2362,2010/05/18 .............T...............G............................A..................................A..................T..............A..... 347 >A/Pune/NIV21115,2009/12/ ......................................T...A...............A..................................A...C..............T.................... 348 >A/Wisconsin/629-D00401,2009/12/08 ..............G.........................G.................A........A.........................A..................T...........A........ 349 >A/Sulaimani/05,2009/12/12 .C........................................................A........A.....................C...A..................T.................... 350 >A/Texas/JMS411,2010/01/25 ...............A..T.............................A.........A..................C...............A..................T.................... 351 >A/Sw/IL/17315-1,2010/03/18 .....................................................C.A..A..A..................G..A........TA..................T.................... 352 >A/Sw/IL/17315-3,2010/03/18 .....................................................C.A..A..A..................G..A........TA..................T.................... 353 >A/Sw/MO/15534,2010/03/24 .....................................................C.A..A..A..................G..A........TA..................T.................... 354 >A/Nizhni Novgorod/CRIE-MEV,2009/07/30 ..........................................................A.......G.................A........A.........G........T.................C.. 355 >A/Texas/JMS408,2010/01/12 ...................A....A........T.......G................A............C.....................A..................T.................... 356 >A/Texas/JMS412,2010/02/01 ............................T.................C...........A.........C.....A............C.....A..................T.................... 357 >A/Cancun-NY/Index/2009/04/15 ..........................................................A.....................................................T.................... ---Index--------------------------------------CTGCGCACATTACCAGTCCCCTATGCTCAACTTATGGACCAAGCACTGGAGCTTGGGGTAGGTCAGAGTCATTTGGCTAAACAGGTTTGTGGCGTCATGTCGAACATGGCAGCCCCGCACAAAGGGGGGCTGT -codon-position-------------------------------1 1 2 1 11 2212 1112 1 2 11 21112 11 1 1 1 1 2 11 1 1 1 1 1 21 21 1 2 0000000000000000000000000000000000000000000000000000000000000000000000000000000000011111111111111111111111111111111111111111111111111 0000000111111111112223333333344444444444455555555666666666666677777788888889999999900000011111111122222223333334444444555555555666666 2334799014466778993672334578923445567788913344466000234455568813556911456890133567801225801247788901455890022330014578113366679236689 5072839240135289145931030290942463962736561403905178190647834775342906726810534568182376049501925162817163569353860838280603674905831
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