Announcement

**gsgs** · February 10, 2010, 02:31 PM

Re: types of flu-A

segment 1: http://magictour.free.fr/panflu/se9a1e.GIF 2 3
segment 2: http://magictour.free.fr/panflu/se9a2a.GIF http://magictour.free.fr/panflu/se9a2h.GIF
segment 3: http://magictour.free.fr/panflu/se9a3a.GIF http://magictour.free.fr/panflu/se9a3h.GIF
segment 4(H1): http://magictour.free.fr/panflu/se9a41b.GIF
segment 5: http://magictour.free.fr/panflu/se9a5a.GIF http://magictour.free.fr/panflu/se9a5h.GIF
segment 6(N1): http://magictour.free.fr/panflu/se9a61a.GIF
segment 7: http://magictour.free.fr/panflu/se9a7a.GIF
segment 8 (NS1): http://magictour.free.fr/panflu/se9a8a1.GIF
segment 8 (NS2): http://magictour.free.fr/panflu/se9a8a2.GIF

right links : markers are sorted horizontally so to group markers
which occur on similar genetical backgrounds.
The positions are no longer consecutive per row

idea: make another field for poultry vs. wild birds

horizontal lines are the different virus-segments

vertical lines are the nucleotide positions where at least 2 viruses
differ from the average

each pixel is a position where the virus differs from the average

on the right a pixel indicates the host (human vs. swine) , then
the HA-type (1-16) , then the NA-type(1-9) then the year (1918-2009)

I use irfanview to zoom in (+) and out (-)

regions with similar vertical lines pattern are substrains, related viruses
with common descendance.

The different "regions" represent the different types of viruses

see here for a classification:

http://www.flugenome.org/show_subtypes.php

see here for a list with counts from Feb.
I wish to specify their subtypes e.g. A,...,L for segment 1
in my pictures, they should be connected regions,
but it's a bit tedious....

------------------------

05.Feb.2009 : 63235=5692+5676+5705+16565+5815+8928+7676+7178
(flugenome.org gibt:5692+5676+5705+16555+5815+8928+7677+7178)

PB2(1),5692=2583+108+1318+1+3+33+310+6+11+17+1301+ 1

PB1(2),5676=871+7+3+1838+74+1171+1626+2+84

PA(3),5705=37+2516+121+1317+1178+10+75+369+50+7+25

HA(4)1,2836=242+2428+92+72+2
HA(4)2,211=115+9+2+13+7+12+3+45+5
HA(4)3,8471=8053+71+69+91+1+186
HA(4)4,208=171+7+26+4
HA(4)5,2616=24+76+125+1+8+35+27+47+7+2253+13
HA(4)6,416=43+255+10+3+11+7+87
HA(4)7,671=236+7+15+17+8+388
HA(4)8,18=18
HA(4)9,884=2+192+565+6+20+39+33+3+7+17
HA(4)10,80=62+1+3+4+9+1
HA(4)11,77=11+7+59
HA(4)12,27=25+2
HA(4)13,24=6+14+4
HA(4)14,4=3+1
HA(4)15,8=8
HA(4)16,11=6+2+3
HA(4)H2N2,1=1
HA(4)H3N2,2=2
16565

NP(5),5815=2943+7+86+18+21+1802+9+929

NA(6)1,3463=1299+131+2+8+169+43+123+81+36+1558+10+ 3
NA(6)2,4558=3312+498+27+164+124+7+424+1+1
NA(6)3,216=98+101+8+5+2+2
NA(6)4,32=24+5+3
NA(6)5,58=1+6+7+44
NA(6)6,154=104+15+28+4+3
NA(6)7,99=2+3+4+21+9+42+18
NA(6)8,272=146+85+41
NA(6)9,75=66+9
NA(6)H5N1,1=1
8928

MP(7),7676=241+3434+26+8+1260+2695+12

NS(8)1,6402=3011+4+28+806+2545+7+1
NS(8)2,776=179+582+9+4+2
7178

**gsgs** · July 30, 2011, 01:11 AM

Re: types of flu-A

H5N1-HA-clades

Wikipedia:
The dominant strain of HPAI A(H5N1) in 2004 evolved from 1999 to 2002 creating the Z genotype.[22]
It has also been called "Asian lineage HPAI A(H5N1)".
Asian lineage HPAI A(H5N1) is divided into two antigenic clades.
Clade 1 includes human and bird isolates from Vietnam, Thailand, and Cambodia
and bird isolates from Laos and Malaysia.
Clade 2 viruses were first identified in bird isolates from China, Indonesia, Japan, and
South Korea before spreading westward to the Middle East, Europe, and Africa.
6 subclades of clade 2
Subclade 1, Indonesia
Subclade 2, Europe, Middle East, and Africa (called EMA)
Subclade 3, China"
3 lineages, HA tree
2 clades : Vietnam
V1 , Vietnam , 5 isolates
V2, Vietnam, 9 isolates
EMA , rest , 22 isolates Europe, Middle East,Africa
Trees for the other 7 segments display a similar topology
589 HA

------------------------------------------------------------

3500 H5N1 (HP) HAs since 1996 :

http://magictour.free.fr/panflu/h5ha11b.GIF

my clades for HP H5N1-HA since 1996
(Qinghai (A)removed from the picture to make it smaller)

http://magictour.free.fr/panflu/h5ha11v5.GIF

mutations between the indices, relative to their average:

http://magictour.free.fr/panflu/i_h5n14v.l2

I should probably merge groups D and S,E and T,F and U

here the markers wrt. the average, which is closest to index_E,
A/Ck/Henan/16/2004 - like, which is close to the origin
of all H5N1 since 2003, except Indo :

http://magictour.free.fr/panflu/i_h5n14v.m2

all HAs assigned to the best matching full HA:

http://magictour.free.fr/panflu/i_h5n14v.t1

instead of A/ is used : x/ where X is the index-group

--------------------------------------------------------------
The latest (Feb, 2011) WHO phylogentic tree with designated sub-clades, including vaccine
targets, is here

404

http://www.who.int/influenza/resources/documents/2011_02_h5_h9_vaccinevirusupdate.pdf

Erreur 404

More detailed larger tree
http://www.who.int/csr/disease/avian...mpleteTree.pdf[/quote]
(hattip HenryN)
WHO-me
22-A,25-H,21-J,211-G,212-J,213-J,231-N,232-Q,232-P,234-O,233-N,24-I
25-H,0-S+C,1-F+U,6-S,5-S,4-S,7-W,3-D,9-T

**gsgs** · March 1, 2012, 03:08 AM

Re: types of flu-A

pairwise differences in percent of the
17 influenza HA- types and subtypes (from flugenome.org)
aligned with kalign

Code:

    | 1A 1B 1C 1D 1E |2A 2B 2C 2D 2E 2F 2G 2H 2I |3A 3B 3C 3D 3E 3F |4A 4B 4C 4D |5A 5B 5C 5D 5E 5F 5G 5H 5I 5J 5K |6A 6B 6C 6D 6E 6F 6G |7A 7B 7C 7D 7E 7F |8A |9A 9B 9C 9D 9E 9F 9G 9H 9I 9J |AA AB AC AD AE AF |BA BB BC |CA CB |DA DB DC |EA EB |FA |GA GB GC |HA |     
=============================================================================================================================================================================================================================================================================
41A | 00 20 22 21 22 |34 34 34 35 34 34 35 34 34 |48 47 47 48 48 48 |47 47 47 48 |39 35 34 40 35 35 34 34 34 34 34 |36 36 36 36 37 37 37 |49 48 48 47 48 49 |43 |43 42 42 42 41 41 41 42 41 41 |47 48 47 47 46 47 |40 40 41 |44 44 |43 43 43 |50 50 |48 |43 44 43 |44 |  41A
41B | 20 00 23 23 23 |35 34 34 34 34 34 35 35 35 |48 49 49 49 49 48 |49 48 48 49 |39 35 34 40 36 35 36 37 36 37 36 |37 38 36 37 38 39 38 |50 49 50 48 49 49 |44 |42 42 43 42 42 43 43 43 41 42 |48 48 48 48 47 48 |40 40 40 |44 44 |44 44 44 |51 51 |48 |44 42 43 |43 |  41B
41C | 22 23 00 11 13 |34 34 34 34 33 33 33 33 34 |48 47 47 48 48 47 |49 48 48 49 |38 35 34 41 35 35 34 35 35 35 35 |36 36 36 37 36 37 37 |48 48 48 47 47 47 |43 |43 42 43 42 42 42 42 42 42 42 |46 45 46 47 47 47 |40 40 39 |44 45 |43 43 43 |50 51 |47 |44 43 43 |44 |  41C
41D | 21 23 11 00 09 |33 33 33 33 33 33 33 33 34 |47 46 46 47 47 47 |48 47 47 48 |38 34 33 38 34 34 33 34 33 34 34 |36 36 36 36 35 36 36 |48 48 48 47 48 47 |43 |43 42 43 41 41 42 42 43 42 41 |45 46 46 47 46 48 |39 40 39 |44 44 |44 44 43 |49 49 |47 |44 43 43 |44 |  41D
41E | 22 23 13 09 00 |33 34 33 34 32 32 32 33 33 |49 47 47 47 48 46 |49 48 47 48 |38 33 33 39 34 34 33 34 33 34 34 |37 37 37 37 36 36 36 |49 49 49 47 48 48 |43 |44 43 43 43 42 42 43 43 42 42 |45 47 46 47 46 48 |40 40 39 |43 44 |43 44 44 |49 49 |47 |43 44 44 |44 |  41E
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
42A | 34 35 34 33 33 |00 07 06 09 07 09 14 14 15 |48 47 49 48 48 48 |48 48 48 49 |34 29 28 32 29 28 29 29 28 29 29 |36 37 36 36 36 37 36 |46 46 45 46 46 47 |41 |42 42 42 41 40 41 41 42 42 41 |47 46 46 46 47 47 |41 40 40 |43 44 |43 44 45 |48 49 |46 |43 42 43 |41 |  42A
42B | 34 34 34 33 34 |07 00 09 12 11 13 15 14 16 |49 48 48 48 48 48 |48 48 48 49 |34 29 28 32 29 28 28 29 28 29 28 |37 36 37 37 37 37 36 |46 46 46 46 46 46 |42 |42 42 42 40 41 41 41 43 42 41 |46 45 46 45 47 47 |40 40 40 |43 44 |43 43 43 |48 49 |46 |43 42 43 |41 |  42B
42C | 34 34 34 33 33 |06 09 00 09 07 09 15 14 15 |48 48 49 49 48 48 |48 49 48 49 |34 28 28 32 29 29 29 29 28 29 29 |36 37 36 36 36 36 36 |47 46 45 46 46 48 |40 |42 41 41 41 40 41 40 42 42 41 |46 45 46 45 47 47 |40 40 39 |43 43 |43 43 44 |48 48 |46 |43 42 43 |41 |  42C
42D | 35 34 34 33 34 |09 12 09 00 06 07 16 15 17 |48 48 48 49 47 48 |47 47 47 48 |34 30 29 33 29 29 28 28 28 29 28 |36 37 36 37 36 36 36 |47 46 46 45 46 47 |41 |42 41 42 41 41 42 41 42 42 41 |47 45 46 45 47 47 |40 39 39 |43 43 |42 43 43 |48 49 |46 |43 42 43 |41 |  42D
42E | 34 34 33 33 32 |07 11 07 06 00 04 15 14 16 |49 48 48 48 47 49 |48 48 47 48 |34 29 28 33 29 28 28 28 27 29 28 |36 36 35 36 36 37 36 |47 46 45 46 46 47 |41 |42 42 42 41 41 41 41 43 42 41 |47 46 46 46 47 47 |40 39 39 |43 43 |43 43 44 |49 49 |46 |43 43 43 |40 |  42E
42F | 34 34 33 33 32 |09 13 09 07 04 00 15 15 16 |49 48 48 49 47 48 |48 48 48 49 |33 28 27 32 28 28 28 29 28 29 28 |36 36 35 36 36 37 37 |48 47 46 46 46 48 |41 |42 42 42 41 41 41 42 42 42 42 |46 45 46 46 47 47 |40 40 40 |43 43 |43 43 44 |48 49 |46 |43 43 43 |41 |  42F
42G | 35 35 33 33 32 |14 15 15 16 15 15 00 10 12 |49 48 48 48 48 48 |48 48 47 48 |34 29 28 33 29 28 28 29 28 29 28 |38 38 38 37 37 37 37 |47 47 47 46 47 47 |43 |42 42 42 42 42 42 42 42 41 41 |45 46 45 46 46 47 |41 40 39 |43 44 |43 43 43 |48 49 |46 |43 43 43 |43 |  42G
42H | 34 35 33 33 33 |14 14 14 15 14 15 10 00 06 |50 48 48 48 48 48 |48 47 47 48 |34 29 28 33 30 29 29 29 29 30 29 |38 38 37 38 36 37 38 |47 46 46 46 46 47 |42 |42 41 42 41 41 42 42 42 42 42 |46 47 46 46 47 47 |39 40 39 |43 44 |43 44 43 |48 49 |45 |43 44 44 |41 |  42H
42I | 34 35 34 34 33 |15 16 15 17 16 16 12 06 00 |49 48 48 47 48 49 |47 48 47 48 |33 29 28 33 30 29 29 29 29 29 29 |38 38 37 38 37 38 38 |47 46 46 46 46 47 |42 |42 41 42 41 41 42 42 42 42 42 |46 46 46 46 46 47 |40 40 39 |43 44 |43 44 43 |48 48 |47 |43 43 43 |41 |  42I
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
43A | 48 48 48 47 49 |48 49 48 48 49 49 49 50 49 |00 15 18 19 19 24 |35 36 35 36 |50 48 48 53 48 48 48 49 49 48 48 |47 48 48 47 48 48 47 |44 44 46 45 44 45 |48 |48 48 48 48 48 47 47 49 48 48 |45 46 45 45 44 46 |48 48 48 |49 49 |50 51 51 |36 37 |44 |50 50 49 |54 |  43A
43B | 47 49 47 46 47 |47 48 48 48 48 48 48 48 48 |15 00 13 13 15 21 |32 34 33 33 |50 48 47 51 47 47 46 47 46 47 47 |47 47 47 47 47 47 46 |44 43 44 44 44 44 |48 |49 48 48 47 47 48 48 51 48 47 |43 42 43 44 43 44 |46 47 47 |49 49 |50 50 50 |34 35 |44 |50 50 49 |51 |  43B
43C | 47 49 47 46 47 |49 48 49 48 48 48 48 48 48 |18 13 00 11 16 21 |33 33 33 33 |49 48 47 50 47 47 47 48 47 48 47 |46 47 47 47 47 46 46 |44 43 44 44 43 43 |48 |49 48 48 48 48 48 48 50 47 48 |45 46 44 44 44 45 |47 47 47 |47 49 |49 50 50 |35 36 |44 |49 50 49 |52 |  43C
43D | 48 49 48 47 47 |48 48 49 49 48 49 48 48 47 |19 13 11 00 17 21 |33 34 33 34 |49 47 47 51 48 47 47 47 47 48 47 |46 46 47 47 47 47 47 |44 44 45 44 44 43 |48 |49 48 48 48 49 48 48 51 47 48 |44 45 44 43 43 45 |47 47 47 |48 49 |50 50 51 |35 36 |44 |49 50 49 |53 |  43D
43E | 48 49 48 47 48 |48 48 48 47 47 47 48 48 48 |19 15 16 17 00 22 |34 33 33 34 |50 48 48 51 48 47 47 48 47 48 47 |47 47 47 48 46 46 46 |44 44 44 44 44 44 |47 |49 49 49 48 48 47 48 50 47 47 |43 45 43 43 43 43 |48 47 48 |47 48 |49 50 50 |36 37 |44 |49 50 48 |51 |  43E
43F | 48 48 47 47 46 |48 48 48 48 49 48 48 48 49 |24 21 21 21 22 00 |33 34 34 35 |51 48 47 51 48 48 47 47 47 48 47 |47 47 48 48 47 47 47 |46 44 44 43 45 46 |50 |49 48 49 48 48 48 49 50 48 48 |43 45 44 44 43 44 |47 47 48 |48 49 |50 50 51 |37 37 |44 |50 50 50 |53 |  43F
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
44A | 47 49 49 48 49 |48 48 48 47 48 48 48 48 47 |35 32 33 33 34 33 |00 16 15 18 |50 48 47 52 48 47 47 48 47 48 47 |48 49 48 48 49 48 48 |43 43 43 44 44 43 |47 |49 48 48 47 47 48 48 49 48 47 |44 44 45 44 44 45 |47 48 47 |47 49 |49 50 50 |29 29 |44 |48 50 49 |50 |  44A
44B | 47 48 48 47 48 |48 48 49 47 48 48 48 47 48 |36 34 33 34 33 34 |16 00 08 13 |51 49 47 51 49 48 48 49 48 49 48 |47 48 48 47 47 48 48 |44 43 44 43 44 45 |48 |50 48 48 48 48 49 49 49 48 49 |43 46 44 44 44 44 |48 47 47 |47 49 |49 50 50 |30 30 |46 |49 48 48 |50 |  44B
44C | 47 48 48 47 47 |48 48 48 47 47 48 47 47 47 |35 33 33 33 33 34 |15 08 00 11 |50 47 47 51 49 48 48 49 48 49 48 |48 48 48 48 48 48 48 |43 42 43 44 43 45 |47 |49 47 48 47 47 48 48 49 47 48 |43 45 44 43 43 44 |47 48 47 |48 48 |50 50 50 |28 28 |46 |49 49 49 |50 |  44C
44D | 48 49 49 48 48 |49 49 49 48 48 49 48 48 48 |36 33 33 34 34 35 |18 13 11 00 |52 50 49 51 50 48 48 49 48 49 48 |48 48 49 48 49 49 48 |44 43 44 44 44 46 |49 |49 48 48 49 48 49 49 50 49 49 |44 46 44 45 44 46 |47 48 48 |49 50 |50 50 50 |29 29 |46 |49 49 50 |50 |  44D
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
45A | 39 39 38 38 38 |34 34 34 34 34 33 34 34 33 |50 50 49 49 50 51 |50 51 50 52 |00 19 16 22 23 22 23 23 23 24 22 |43 43 42 43 42 42 42 |50 48 48 47 50 50 |45 |45 45 45 44 44 45 44 46 44 43 |48 45 48 49 49 50 |43 43 43 |47 46 |46 46 46 |52 52 |50 |46 44 45 |47 |  45A
45B | 35 35 35 34 33 |29 29 28 30 29 28 29 29 29 |48 48 48 47 48 48 |48 49 47 50 |19 00 06 21 18 17 17 17 17 19 17 |38 38 38 38 37 37 37 |47 46 46 46 47 47 |42 |41 41 41 40 41 41 40 42 40 40 |45 41 46 47 47 47 |38 39 39 |44 43 |43 43 43 |50 50 |48 |42 42 42 |43 |  45B
45C | 34 34 34 33 33 |28 28 28 29 28 27 28 28 28 |48 47 47 47 48 47 |47 47 47 49 |16 06 00 20 16 15 15 16 15 18 16 |38 38 37 37 36 36 36 |47 45 45 45 47 47 |41 |42 42 42 41 41 41 41 42 39 41 |45 41 45 46 46 47 |38 38 38 |43 43 |42 42 42 |50 50 |48 |42 42 41 |42 |  45C
45D | 40 40 41 38 39 |32 32 32 33 33 32 33 33 33 |53 51 50 51 51 51 |52 51 51 51 |22 21 20 00 16 17 17 16 17 19 17 |42 42 42 42 42 41 42 |48 47 49 47 50 49 |46 |44 45 43 44 44 43 44 45 44 43 |48 45 46 49 49 48 |42 41 44 |46 45 |46 45 47 |52 52 |49 |46 44 44 |45 |  45D
45E | 35 36 35 34 34 |29 29 29 29 29 28 29 30 30 |48 47 47 48 48 48 |48 49 49 50 |23 18 16 16 00 07 10 10 10 12 10 |38 38 38 38 37 37 36 |47 46 47 46 48 49 |43 |42 42 42 41 42 42 41 43 41 41 |47 44 47 48 48 49 |39 38 39 |43 43 |43 42 43 |49 49 |47 |44 42 42 |43 |  45E
45F | 35 35 35 34 34 |28 28 29 29 28 28 28 29 29 |48 47 47 47 47 48 |47 48 48 48 |22 17 15 17 07 00 04 05 04 08 05 |37 38 38 37 37 37 36 |47 47 47 46 48 48 |42 |42 42 41 41 41 42 41 42 41 41 |47 43 46 48 48 48 |40 39 39 |43 42 |43 42 43 |49 49 |48 |43 42 42 |42 |  45F
45G | 34 36 34 33 33 |29 28 29 28 28 28 28 29 29 |48 46 47 47 47 47 |47 48 48 48 |23 17 15 17 10 04 00 04 04 06 04 |37 38 39 38 36 36 35 |46 47 46 46 48 47 |42 |41 42 41 41 40 41 41 42 41 40 |46 44 46 47 47 48 |39 39 39 |43 42 |42 42 42 |48 48 |47 |43 42 42 |43 |  45G
45H | 34 37 35 34 34 |29 29 29 28 28 29 29 29 29 |49 47 48 47 48 47 |48 49 49 49 |23 17 16 16 10 05 04 00 04 07 04 |38 39 39 38 37 37 36 |47 47 48 46 48 48 |42 |41 42 42 41 41 42 41 42 41 41 |47 44 46 47 48 48 |40 40 40 |43 43 |42 43 43 |50 49 |49 |43 42 43 |43 |  45H
45I | 34 36 35 33 33 |28 28 28 28 27 28 28 29 29 |49 46 47 47 47 47 |47 48 48 48 |23 17 15 17 10 04 04 04 00 06 04 |36 37 38 37 37 37 36 |47 46 46 46 47 47 |42 |42 42 41 41 41 41 41 43 41 41 |46 44 46 47 47 48 |39 39 39 |43 43 |42 42 43 |49 49 |48 |43 42 42 |43 |  45I
45J | 34 37 35 34 34 |29 29 29 29 29 29 29 30 29 |48 47 48 48 48 48 |48 49 49 49 |24 19 18 19 12 08 06 07 06 00 06 |38 39 39 39 38 38 38 |47 47 47 46 48 48 |42 |41 42 41 41 41 41 41 42 41 40 |46 44 46 47 47 48 |39 38 39 |43 43 |43 43 43 |50 50 |48 |43 42 42 |43 |  45J
45K | 34 36 35 34 34 |29 28 29 28 28 28 28 29 29 |48 47 47 47 47 47 |47 48 48 48 |22 17 16 17 10 05 04 04 04 06 00 |37 38 38 38 38 38 36 |47 47 47 46 48 48 |43 |41 41 41 40 40 41 41 42 41 40 |46 43 46 47 47 48 |39 40 39 |42 43 |43 42 43 |49 49 |48 |43 42 43 |43 |  45K
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
46A | 36 37 36 36 37 |36 37 36 36 36 36 38 38 38 |47 47 46 46 47 47 |48 47 48 48 |43 38 38 42 38 37 37 38 36 38 37 |00 06 08 08 18 22 21 |47 49 47 47 48 49 |41 |42 42 42 41 41 41 42 43 41 42 |48 47 48 49 48 49 |42 41 41 |42 42 |44 44 45 |49 50 |47 |46 45 45 |45 |  46A
46B | 36 38 36 36 37 |37 36 37 37 36 36 38 38 38 |48 47 47 46 47 47 |49 48 48 48 |43 38 38 42 38 38 38 39 37 39 38 |06 00 11 10 19 22 22 |47 48 47 47 48 48 |40 |41 43 42 41 41 41 42 44 41 41 |48 46 48 49 48 49 |42 42 41 |41 41 |43 44 44 |49 49 |46 |46 45 45 |44 |  46B
46C | 36 36 36 36 37 |36 37 36 36 35 35 38 37 37 |48 47 47 47 47 48 |48 48 48 49 |42 38 37 42 38 38 39 39 38 39 38 |08 11 00 12 19 22 22 |47 48 47 48 49 49 |41 |42 43 43 42 42 42 42 43 41 42 |48 45 49 49 49 50 |42 41 41 |42 42 |43 44 44 |50 50 |48 |45 44 44 |45 |  46C
46D | 36 37 37 36 37 |36 37 36 37 36 36 37 38 38 |47 47 47 47 48 48 |48 47 48 48 |43 38 37 42 38 37 38 38 37 39 38 |08 10 12 00 18 21 21 |47 48 47 48 48 48 |41 |42 42 41 41 41 41 41 43 40 42 |49 44 49 50 49 50 |42 41 41 |42 42 |43 44 45 |50 50 |47 |46 45 45 |45 |  46D
46E | 37 38 36 35 36 |36 37 36 36 36 36 37 36 37 |48 47 47 47 46 47 |49 47 48 49 |42 37 36 42 37 37 36 37 37 38 38 |18 19 19 18 00 11 12 |47 46 45 47 47 48 |40 |42 42 42 42 42 41 41 42 41 42 |47 48 48 48 49 48 |42 42 40 |42 42 |44 45 44 |49 50 |47 |44 44 45 |45 |  46E
46F | 37 39 37 36 36 |37 37 36 36 37 37 37 37 38 |48 47 46 47 46 47 |48 48 48 49 |42 37 36 41 37 37 36 37 37 38 38 |22 22 22 21 11 00 07 |48 47 47 48 48 49 |41 |41 42 41 41 41 41 40 43 41 41 |48 49 48 49 49 50 |41 42 41 |41 42 |44 45 45 |49 50 |47 |45 44 44 |46 |  46F
46G | 37 38 37 36 36 |36 36 36 36 36 37 37 38 38 |47 46 46 47 46 47 |48 48 48 48 |42 37 36 42 36 36 35 36 36 38 36 |21 22 22 21 12 07 00 |47 47 47 48 48 49 |40 |42 42 41 41 41 41 41 42 41 41 |47 49 47 48 49 48 |41 42 40 |41 42 |44 44 44 |49 49 |48 |44 44 43 |45 |  46G
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
47A | 49 50 48 48 49 |46 46 47 47 47 48 47 47 47 |44 44 44 44 44 46 |43 44 43 44 |50 47 47 48 47 47 46 47 47 47 47 |47 47 47 47 47 48 47 |00 14 16 20 22 23 |48 |49 47 47 48 48 48 48 49 48 48 |35 40 34 35 35 36 |49 49 48 |48 49 |50 51 50 |44 44 |25 |49 49 48 |51 |  47A
47B | 48 49 48 48 49 |46 46 46 46 46 47 47 46 46 |44 43 43 44 44 44 |43 43 42 43 |48 46 45 47 46 47 47 47 46 47 47 |49 48 48 48 46 47 47 |14 00 15 19 22 23 |48 |49 47 48 48 48 48 48 50 47 48 |35 38 34 35 35 35 |48 48 48 |48 48 |48 50 49 |45 45 |26 |49 49 48 |51 |  47B
47C | 48 50 48 48 49 |45 46 45 46 45 46 47 46 46 |46 44 44 45 44 44 |43 44 43 44 |48 46 45 49 47 47 46 48 46 47 47 |47 47 47 47 45 47 47 |16 15 00 22 23 25 |48 |48 47 47 48 47 47 48 49 47 48 |34 39 34 34 35 34 |47 48 47 |48 48 |49 50 50 |45 45 |26 |49 48 48 |50 |  47C
47D | 47 48 47 47 47 |46 46 46 45 46 46 46 46 46 |45 44 44 44 44 43 |44 43 44 44 |47 46 45 47 46 46 46 46 46 46 46 |47 47 48 48 47 48 48 |20 19 22 00 26 25 |49 |48 48 48 48 48 49 48 49 48 48 |35 40 35 36 36 37 |47 47 47 |48 48 |49 48 49 |45 45 |28 |50 48 49 |50 |  47D
47E | 48 49 47 48 48 |46 46 46 46 46 46 47 46 46 |44 44 43 44 44 45 |44 44 43 44 |50 47 47 50 48 48 48 48 47 48 48 |48 48 49 48 47 48 48 |22 22 23 26 00 18 |49 |49 48 48 48 48 48 47 48 47 47 |36 40 36 35 36 36 |48 48 48 |48 47 |49 50 50 |44 45 |26 |50 49 50 |50 |  47E
47F | 49 49 47 47 48 |47 46 48 47 47 48 47 47 47 |45 44 43 43 44 46 |43 45 45 46 |50 47 47 49 49 48 47 48 47 48 48 |49 48 49 48 48 49 49 |23 23 25 25 18 00 |50 |50 49 49 50 50 49 49 51 49 50 |37 42 37 35 36 36 |49 48 48 |49 48 |49 49 50 |45 46 |26 |50 50 49 |52 |  47F
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
48A | 43 44 43 43 43 |41 42 40 41 41 41 43 42 42 |48 48 48 48 47 50 |47 48 47 49 |45 42 41 46 43 42 42 42 42 42 43 |41 40 41 41 40 41 40 |48 48 48 49 49 50 |00 |37 37 36 36 36 35 36 37 35 36 |48 44 49 49 48 50 |42 42 42 |33 33 |43 44 44 |48 48 |48 |44 43 44 |44 |  48A
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
49A | 43 42 43 43 44 |42 42 42 42 42 42 42 42 42 |48 49 49 49 49 49 |49 50 49 49 |45 41 42 44 42 42 41 41 42 41 41 |42 41 42 42 42 41 42 |49 49 48 48 49 50 |37 |00 08 08 05 10 12 11 15 15 08 |50 45 50 50 49 50 |42 41 41 |35 37 |43 42 43 |50 50 |49 |43 43 43 |46 |  49A
49B | 42 42 42 42 43 |42 42 41 41 42 42 42 41 41 |48 48 48 48 49 48 |48 48 47 48 |45 41 42 45 42 42 42 42 42 42 41 |42 43 43 42 42 42 42 |47 47 47 48 48 49 |37 |08 00 07 08 13 13 13 16 16 11 |49 45 49 49 49 50 |42 41 40 |36 37 |43 42 43 |49 49 |48 |42 43 43 |46 |  49B
49C | 42 43 43 43 43 |42 42 41 42 42 42 42 42 42 |48 48 48 48 49 49 |48 48 48 48 |45 41 42 43 42 41 41 42 41 41 41 |42 42 43 41 42 41 41 |47 48 47 48 48 49 |36 |08 07 00 09 12 14 14 16 16 11 |49 45 49 49 49 50 |42 42 41 |35 37 |43 42 43 |49 50 |48 |42 43 43 |47 |  49C
49D | 42 42 42 41 43 |41 40 41 41 41 41 42 41 41 |48 47 48 48 48 48 |47 48 47 49 |44 40 41 44 41 41 41 41 41 41 40 |41 41 42 41 42 41 41 |48 48 48 48 48 50 |36 |05 08 09 00 07 09 07 12 14 04 |50 45 49 48 48 50 |41 41 40 |35 36 |43 42 42 |49 49 |48 |43 43 42 |46 |  49D
49E | 41 42 42 41 42 |40 41 40 41 41 41 42 41 41 |48 47 48 49 48 48 |47 48 47 48 |44 41 41 44 42 41 40 41 41 41 40 |41 41 42 41 42 41 41 |48 48 47 48 48 50 |36 |10 13 12 07 00 11 09 14 15 07 |49 47 50 48 49 50 |41 40 40 |34 36 |42 42 42 |50 50 |49 |43 43 43 |46 |  49E
49F | 41 43 42 42 42 |41 41 41 42 41 41 42 42 42 |47 48 48 48 47 48 |48 49 48 49 |45 41 41 43 42 42 41 42 41 41 41 |41 41 42 41 41 41 41 |48 48 47 49 48 49 |35 |12 13 14 09 11 00 07 16 16 09 |49 46 49 49 48 49 |41 41 41 |35 36 |42 42 42 |49 50 |48 |43 43 43 |45 |  49F
49G | 41 43 42 42 43 |41 41 40 41 41 42 42 42 42 |47 48 48 48 48 49 |48 49 48 49 |44 40 41 44 41 41 41 41 41 41 41 |42 42 42 41 41 40 41 |48 48 48 48 47 49 |36 |11 13 14 07 09 07 00 14 15 07 |49 47 49 49 48 50 |41 41 41 |35 35 |42 42 43 |49 50 |48 |44 43 42 |46 |  49G
49H | 42 43 42 43 43 |42 43 42 42 43 42 42 42 42 |49 51 50 51 50 50 |49 49 49 50 |46 42 42 45 43 42 42 42 43 42 42 |43 44 43 43 42 43 42 |49 50 49 49 48 51 |37 |15 16 16 12 14 16 14 00 16 13 |51 47 51 50 51 50 |43 42 42 |36 37 |43 42 43 |50 50 |50 |44 43 44 |47 |  49H
49I | 41 41 42 42 42 |42 42 42 42 42 42 41 42 42 |48 48 47 47 47 48 |48 48 47 49 |44 40 39 44 41 41 41 41 41 41 41 |41 41 41 40 41 41 41 |48 47 47 48 47 49 |35 |15 16 16 14 15 16 15 16 00 14 |50 46 49 50 49 51 |41 41 40 |36 37 |43 42 43 |51 51 |49 |43 43 43 |46 |  49I
49J | 41 42 42 41 42 |41 41 41 41 41 42 41 42 42 |48 47 48 48 47 48 |47 49 48 49 |43 40 41 43 41 41 40 41 41 40 40 |42 41 42 42 42 41 41 |48 48 48 48 47 50 |36 |08 11 11 04 07 09 07 13 14 00 |49 47 50 48 49 50 |41 41 40 |35 36 |42 41 42 |49 50 |48 |42 42 42 |46 |  49J
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
4AA | 47 48 46 45 45 |47 46 46 47 47 46 45 46 46 |45 43 45 44 43 43 |44 43 43 44 |48 45 45 48 47 47 46 47 46 46 46 |48 48 48 49 47 48 47 |35 35 34 35 36 37 |48 |50 49 49 50 49 49 49 51 50 49 |00 31 07 18 17 19 |47 47 48 |47 49 |49 49 49 |43 44 |35 |47 48 48 |50 |  4AA
4AB | 48 48 45 46 47 |46 45 45 45 46 45 46 47 46 |46 42 46 45 45 45 |44 46 45 46 |45 41 41 45 44 43 44 44 44 44 43 |47 46 45 44 48 49 49 |40 38 39 40 40 42 |44 |45 45 45 45 47 46 47 47 46 47 |31 00 30 35 33 36 |49 52 51 |44 48 |47 49 50 |50 51 |41 |47 48 50 |48 |  4AB
4AC | 47 48 46 46 46 |46 46 46 46 46 46 45 46 46 |45 43 44 44 43 44 |45 44 44 44 |48 46 45 46 47 46 46 46 46 46 46 |48 48 49 49 48 48 47 |34 34 34 35 36 37 |49 |50 49 49 49 50 49 49 51 49 50 |07 30 00 18 18 19 |47 47 48 |48 49 |49 50 50 |44 44 |35 |47 48 48 |50 |  4AC
4AD | 47 48 47 47 47 |46 45 45 45 46 46 46 46 46 |45 44 44 43 43 44 |44 44 43 45 |49 47 46 49 48 48 47 47 47 47 47 |49 49 49 50 48 49 48 |35 35 34 36 35 35 |49 |50 49 49 48 48 49 49 50 50 48 |18 35 18 00 09 10 |48 48 48 |49 49 |48 49 49 |44 44 |35 |49 49 49 |51 |  4AD
4AE | 46 47 47 46 46 |47 47 47 47 47 47 46 47 46 |44 43 44 43 43 43 |44 44 43 44 |49 47 46 49 48 48 47 48 47 47 47 |48 48 49 49 49 49 49 |35 35 35 36 36 36 |48 |49 49 49 48 49 48 48 51 49 49 |17 33 18 09 00 09 |47 47 48 |49 49 |49 49 50 |44 45 |36 |48 49 49 |50 |  4AE
4AF | 47 48 47 48 48 |47 47 47 47 47 47 47 47 47 |46 44 45 45 43 44 |45 44 44 46 |50 47 47 48 49 48 48 48 48 48 48 |49 49 50 50 48 50 48 |36 35 34 37 36 36 |50 |50 50 50 50 50 49 50 50 51 50 |19 36 19 10 09 00 |49 49 49 |50 51 |50 50 50 |45 45 |36 |50 50 50 |51 |  4AF
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
4BA | 40 40 40 39 40 |41 40 40 40 40 40 41 39 40 |48 46 47 47 48 47 |47 48 47 47 |43 38 38 42 39 40 39 40 39 39 39 |42 42 42 42 42 41 41 |49 48 47 47 48 49 |42 |42 42 42 41 41 41 41 43 41 41 |47 49 47 48 47 49 |00 08 18 |42 43 |36 36 37 |49 49 |48 |36 36 38 |46 |  4BA
4BB | 40 40 40 40 40 |40 40 40 39 39 40 40 40 40 |48 47 47 47 47 47 |48 47 48 48 |43 39 38 41 38 39 39 40 39 38 40 |41 42 41 41 42 42 42 |49 48 48 47 48 48 |42 |41 41 42 41 40 41 41 42 41 41 |47 52 47 48 47 49 |08 00 18 |42 43 |36 35 38 |48 49 |47 |37 35 37 |46 |  4BB
4BC | 41 40 39 39 39 |40 40 39 39 39 40 39 39 39 |48 47 47 47 48 48 |47 47 47 48 |43 39 38 44 39 39 39 40 39 39 39 |41 41 41 41 40 41 40 |48 48 47 47 48 48 |42 |41 40 41 40 40 41 41 42 40 40 |48 51 48 48 48 49 |18 18 00 |41 43 |36 37 36 |50 50 |48 |37 37 38 |46 |  4BC
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
4CA | 44 44 44 44 43 |43 43 43 43 43 43 43 43 43 |49 49 47 48 47 48 |47 47 48 49 |47 44 43 46 43 43 43 43 43 43 42 |42 41 42 42 42 41 41 |48 48 48 48 48 49 |33 |35 36 35 35 34 35 35 36 36 35 |47 44 48 49 49 50 |42 42 41 |00 17 |42 43 44 |49 50 |48 |43 42 43 |45 |  4CA
4CB | 44 44 45 44 44 |44 44 43 43 43 43 44 44 44 |49 49 49 49 48 49 |49 49 48 50 |46 43 43 45 43 42 42 43 43 43 43 |42 41 42 42 42 42 42 |49 48 48 48 47 48 |33 |37 37 37 36 36 36 35 37 37 36 |49 48 49 49 49 51 |43 43 43 |17 00 |44 44 44 |50 50 |49 |44 44 45 |44 |  4CB
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
4DA | 43 44 43 44 43 |43 43 43 42 43 43 43 43 43 |50 50 49 50 49 50 |49 49 50 50 |46 43 42 46 43 43 42 42 42 43 43 |44 43 43 43 44 44 44 |50 48 49 49 49 49 |43 |43 43 43 43 42 42 42 43 43 42 |49 47 49 48 49 50 |36 36 36 |42 44 |00 15 19 |50 50 |48 |25 26 26 |47 |  4DA
4DB | 43 44 43 44 44 |44 43 43 43 43 43 43 44 44 |51 50 50 50 50 50 |50 50 50 50 |46 43 42 45 42 42 42 43 42 43 42 |44 44 44 44 45 45 44 |51 50 50 48 50 49 |44 |42 42 42 42 42 42 42 42 42 41 |49 49 50 49 49 50 |36 35 37 |43 44 |15 00 21 |49 50 |49 |26 27 25 |46 |  4DB
4DC | 43 44 43 43 44 |45 43 44 43 44 44 43 43 43 |51 50 50 51 50 51 |50 50 50 50 |46 43 42 47 43 43 42 43 43 43 43 |45 44 44 45 44 45 44 |50 49 50 49 50 50 |44 |43 43 43 42 42 42 43 43 43 42 |49 50 50 49 50 50 |37 38 36 |44 44 |19 21 00 |50 50 |48 |27 28 26 |46 |  4DC
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
4EA | 50 51 50 49 49 |48 48 48 48 49 48 48 48 48 |36 34 35 35 36 37 |29 30 28 29 |52 50 50 52 49 49 48 50 49 50 49 |49 49 50 50 49 49 49 |44 45 45 45 44 45 |48 |50 49 49 49 50 49 49 50 51 49 |43 50 44 44 44 45 |49 48 50 |49 50 |50 49 50 |00 01 |43 |49 50 49 |51 |  4EA
4EB | 50 51 51 49 49 |49 49 48 49 49 49 49 49 48 |37 35 36 36 37 37 |29 30 28 29 |52 50 50 52 49 49 48 49 49 50 49 |50 49 50 50 50 50 49 |44 45 45 45 45 46 |48 |50 49 50 49 50 50 50 50 51 50 |44 51 44 44 45 45 |49 49 50 |50 50 |50 50 50 |01 00 |43 |50 51 49 |51 |  4EB
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
4FA | 48 48 47 47 47 |46 46 46 46 46 46 46 45 47 |44 44 44 44 44 44 |44 46 46 46 |50 48 48 49 47 48 47 49 48 48 48 |47 46 48 47 47 47 48 |25 26 26 28 26 26 |48 |49 48 48 48 49 48 48 50 49 48 |35 41 35 35 36 36 |48 47 48 |48 49 |48 49 48 |43 43 |00 |50 50 50 |52 |  4FA
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
4GA | 43 44 44 44 43 |43 43 43 43 43 43 43 43 43 |50 50 49 49 49 50 |48 49 49 49 |46 42 42 46 44 43 43 43 43 43 43 |46 46 45 46 44 45 44 |49 49 49 50 50 50 |44 |43 42 42 43 43 43 44 44 43 42 |47 47 47 49 48 50 |36 37 37 |43 44 |25 26 27 |49 50 |50 |00 19 17 |45 |  4GA
4GB | 44 42 43 43 44 |42 42 42 42 43 43 43 44 43 |50 50 50 50 50 50 |50 48 49 49 |44 42 42 44 42 42 42 42 42 42 42 |45 45 44 45 44 44 44 |49 49 48 48 49 50 |43 |43 43 43 43 43 43 43 43 43 42 |48 48 48 49 49 50 |36 35 37 |42 44 |26 27 28 |50 51 |50 |19 00 11 |44 |  4GB
4GC | 43 43 43 43 44 |43 43 43 43 43 43 43 44 43 |49 49 49 49 48 50 |49 48 49 50 |45 42 41 44 42 42 42 43 42 42 43 |45 45 44 45 45 44 43 |48 48 48 49 50 49 |44 |43 43 43 42 43 43 42 44 43 42 |48 50 48 49 49 50 |38 37 38 |43 45 |26 25 26 |49 49 |50 |17 11 00 |45 |  4GC
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
4HA | 44 43 44 44 44 |41 41 41 41 40 41 43 41 41 |54 51 52 53 51 53 |50 50 50 50 |47 43 42 45 43 42 43 43 43 43 43 |45 44 45 45 45 46 45 |51 51 50 50 50 52 |44 |46 46 47 46 46 45 46 47 46 46 |50 48 50 51 50 51 |46 46 46 |45 44 |47 46 46 |51 51 |52 |45 44 45 |00 |  4HA
=============================================================================================================================================================================================================================================================================
    | 1A 1B 1C 1D 1E |2A 2B 2C 2D 2E 2F 2G 2H 2I |3A 3B 3C 3D 3E 3F |4A 4B 4C 4D |5A 5B 5C 5D 5E 5F 5G 5H 5I 5J 5K |6A 6B 6C 6D 6E 6F 6G |7A 7B 7C 7D 7E 7F |8A |9A 9B 9C 9D 9E 9F 9G 9H 9I 9J |AA AB AC AD AE AF |BA BB BC |CA CB |DA DB DC |EA EB |FA |GA GB GC |HA |

Code:

     1  2  3  4  5  6  7  8  9  A  B  C  D  E  F  G  H       min
--|-----------------------------------------------------|-------
1 | 00 32 46 47 33 35 47 43 41 45 39 43 43 49 47 42 43  | 1  32
2 | 32 00 47 47 27 35 45 40 40 45 39 43 42 48 45 42 40  | 2  27
3 | 46 47 00 32 46 46 43 47 47 42 46 47 49 34 44 48 51  | 3  32
4 | 47 47 32 00 47 47 42 47 47 43 47 47 49 28 44 48 50  | 4  28
5 | 33 27 46 47 00 35 45 41 39 41 38 42 42 48 47 41 42  | 5  27
6 | 35 35 46 47 35 00 45 40 40 44 40 41 43 49 46 43 44  | 6  35
7 | 47 45 43 42 45 45 00 48 47 34 47 47 48 44 25 48 50  | 7  25
8 | 43 40 47 47 41 40 48 00 35 44 42 33 43 48 48 43 44  | 8  33
9 | 41 40 47 47 39 40 47 35 00 45 40 34 41 49 48 42 45  | 9  34
A | 45 45 42 43 41 44 34 44 45 00 47 44 47 43 35 47 48  | A  34
B | 39 39 46 47 38 40 47 42 40 47 00 41 35 48 47 35 46  | B  35
C | 43 43 47 47 42 41 47 33 34 44 41 00 42 49 48 42 44  | C  33
D | 43 42 49 49 42 43 48 43 41 47 35 42 00 49 48 25 46  | D  25
E | 49 48 34 28 48 49 44 48 49 43 48 49 49 00 43 49 51  | E  28
F | 47 45 44 44 47 46 25 48 48 35 47 48 48 43 00 50 52  | F  25
G | 42 42 48 48 41 43 48 43 42 47 35 42 25 49 50 00 44  | G  25
H | 43 40 51 50 42 44 50 44 45 48 46 44 46 51 52 44 00  | H  40
--|-----------------------------------------------------|-------
     1  2  3  4  5  6  7  8  9  A  B  C  D  E  F  G  H

7-25-F =: 7F
D-25-G =: DG
2-27-5 =: 25
4-28-E =: 4E
8-33-C =: 8C

1-32-2 =: 125
3-32-4 =: 34E
6-35-1 =: 1256
9-34-C =: 89C
A-34-7 =: 7AF
B-35-D =: BDG
H

Code:

      1256 34E 7AF 89C BDG   H
-------------------------------
1256    00  46  41  39  38  40
34E     46  00  42  47  46  50
7AF     41  42  00  44  47  48
89C     39  47  44  00  40  44
BDG     38  46  47  40  00  44
H       40  50  48  44  44  00

**gsgs** · March 1, 2012, 03:10 AM

Re: types of flu-A

NA:

Code:

      1A 1B 1C 1D 1E 1F 1G 1H 1I 1J 1K 1L |2A 2B 2C 2D 2E 2F 2G 2H 2I |3A 3B 3C 3D 3E 3F |4A 4B 4C |5A 5B 5C 5D |6A 6B 6C 6D 6E |7A 7B 7C 7D 7E 7F 7G |8A 8B 8C |9A 9B |AA |
==================================================================================================================================================================================
61A | 00 18 16 21 18 19 21 19 22 21 20 20 |50 49 50 50 50 50 49 50 49 |48 47 48 49 49 48 |36 36 36 |34 43 43 42 |48 48 49 48 49 |47 49 48 47 47 49 49 |42 43 44 |50 48 |58 |  61A
61B | 18 00 15 20 17 17 20 19 20 21 20 19 |49 48 49 48 48 49 50 49 49 |47 48 49 49 50 49 |35 35 35 |33 42 40 42 |49 48 48 47 48 |48 49 49 48 48 49 49 |42 42 42 |49 48 |57 |  61B
61C | 16 15 00 15 11 12 15 13 15 16 14 13 |48 47 48 47 47 47 47 47 47 |45 45 46 47 47 46 |33 34 34 |33 41 40 41 |47 48 47 47 47 |48 48 48 47 46 46 46 |41 42 40 |47 46 |57 |  61C
61D | 21 20 15 00 17 17 18 18 20 19 18 18 |49 47 49 48 47 49 48 49 49 |46 46 47 49 49 48 |35 33 34 |37 43 42 42 |47 48 49 48 49 |48 48 47 47 47 48 48 |42 42 41 |48 47 |58 |  61D
61E | 18 17 11 17 00 10 14 12 14 14 12 12 |48 47 48 47 48 48 48 47 48 |46 45 46 48 48 46 |35 34 34 |33 41 41 41 |48 48 47 47 47 |47 48 48 47 46 47 47 |42 41 41 |47 47 |56 |  61E
61F | 19 17 12 17 10 00 10 08 10 10 09 07 |49 49 50 48 48 48 48 48 49 |47 47 47 48 49 48 |34 34 34 |33 41 41 41 |47 48 47 47 47 |48 49 47 47 47 49 48 |42 42 42 |47 47 |57 |  61F
61G | 21 20 15 18 14 10 00 11 12 12 10 08 |48 49 49 48 48 48 48 48 48 |45 45 46 47 47 47 |33 32 33 |33 40 41 41 |47 47 46 46 46 |48 48 46 46 46 47 46 |41 42 42 |46 45 |57 |  61G
61H | 19 19 13 18 12 08 11 00 09 07 05 07 |48 48 48 47 47 47 47 47 47 |46 46 47 48 48 46 |34 33 33 |33 41 40 41 |47 47 47 47 47 |48 47 47 46 46 48 47 |41 41 41 |47 46 |57 |  61H
61I | 22 20 15 20 14 10 12 09 00 09 07 09 |49 48 49 48 47 48 48 48 48 |46 46 48 48 48 47 |34 33 33 |33 41 40 41 |47 47 47 47 47 |48 48 47 47 47 49 48 |42 42 42 |48 46 |58 |  61I
61J | 21 21 16 19 14 10 12 07 09 00 06 08 |48 48 49 47 47 48 47 47 48 |46 46 47 48 48 48 |34 33 33 |34 41 41 41 |46 47 46 47 47 |49 48 47 47 47 48 47 |42 42 41 |48 46 |57 |  61J
61K | 20 20 14 18 12 09 10 05 07 06 00 07 |48 48 49 48 48 49 47 48 48 |47 47 48 49 49 48 |34 34 34 |34 42 41 42 |48 48 47 47 47 |48 48 47 47 47 49 48 |42 43 42 |47 47 |57 |  61K
61L | 20 19 13 18 12 07 08 07 09 08 07 00 |49 49 50 48 48 49 48 49 48 |47 47 47 48 49 48 |34 34 34 |31 42 41 41 |47 48 46 47 47 |49 48 48 47 47 48 47 |42 42 42 |47 47 |57 |  61L
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
62A | 50 49 48 49 48 49 48 48 49 48 48 49 |00 16 13 14 16 14 16 15 16 |44 45 45 45 45 44 |49 49 49 |34 49 48 47 |44 45 45 45 45 |45 44 45 45 45 45 46 |47 47 48 |48 47 |60 |  62A
62B | 49 48 47 47 47 49 49 48 48 48 48 49 |16 00 14 09 06 11 12 11 13 |44 44 44 44 44 43 |48 48 49 |36 48 47 47 |45 45 45 45 44 |45 45 45 45 46 45 45 |47 47 48 |47 47 |59 |  62B
62C | 50 49 48 49 48 50 49 48 49 49 49 50 |13 14 00 09 13 09 11 10 13 |43 44 44 44 45 43 |48 48 48 |32 48 47 47 |44 44 45 44 44 |45 44 46 45 46 45 45 |46 46 46 |46 47 |60 |  62C
62D | 50 48 47 48 47 48 48 47 48 47 48 48 |14 09 09 00 08 06 07 06 08 |43 44 44 44 44 43 |47 48 47 |32 47 47 47 |43 45 44 44 43 |45 44 45 45 46 45 45 |46 45 46 |46 45 |59 |  62D
62E | 50 48 47 47 48 48 48 47 47 47 48 48 |16 06 13 08 00 10 11 10 12 |44 45 45 45 45 43 |47 47 48 |33 48 47 47 |44 45 45 45 44 |45 44 45 45 45 44 44 |46 47 47 |47 46 |58 |  62E
62F | 50 49 47 49 48 48 48 47 48 48 49 49 |14 11 09 06 10 00 08 07 10 |43 43 44 44 44 43 |48 48 48 |32 48 47 47 |44 44 44 44 44 |45 44 45 45 46 44 45 |45 46 46 |46 46 |60 |  62F
62G | 49 50 47 48 48 48 48 47 48 47 47 48 |16 12 11 07 11 08 00 07 10 |44 44 44 45 45 43 |48 48 47 |33 48 47 48 |44 44 44 44 44 |45 44 45 44 45 44 45 |45 46 46 |46 45 |59 |  62G
62H | 50 49 47 49 47 48 48 47 48 47 48 49 |15 11 10 06 10 07 07 00 10 |43 44 44 44 45 43 |48 48 48 |33 48 47 48 |43 45 44 45 44 |45 44 45 44 46 44 45 |46 46 46 |46 45 |60 |  62H
62I | 49 49 47 49 48 49 48 47 48 48 48 48 |16 13 13 08 12 10 10 10 00 |43 44 43 45 46 44 |48 49 49 |32 48 47 47 |43 44 43 44 43 |46 44 45 45 46 45 45 |46 47 47 |46 46 |60 |  62I
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
63A | 48 47 45 46 46 47 45 46 46 46 47 47 |44 44 43 43 44 43 44 43 43 |00 12 14 26 26 25 |48 47 48 |41 50 50 49 |46 45 45 45 45 |46 46 47 46 46 46 45 |50 49 52 |46 46 |56 |  63A
63B | 47 48 45 46 45 47 45 46 46 46 47 47 |45 44 44 44 45 43 44 44 44 |12 00 16 27 25 26 |48 47 48 |39 49 49 49 |47 46 46 46 46 |47 47 47 47 46 46 46 |49 48 50 |46 47 |58 |  63B
63C | 48 49 46 47 46 47 46 47 48 47 48 47 |45 44 44 44 45 44 44 44 43 |14 16 00 27 28 27 |50 49 49 |41 51 52 49 |47 48 46 48 47 |48 48 48 47 47 48 47 |50 50 52 |47 47 |57 |  63C
63D | 49 49 47 49 48 48 47 48 48 48 49 48 |45 44 44 44 45 44 45 44 45 |26 27 27 00 12 12 |48 48 48 |46 51 51 50 |50 48 49 49 48 |50 50 50 49 48 49 48 |50 50 51 |48 48 |56 |  63D
63E | 49 50 47 49 48 49 47 48 48 48 49 49 |45 44 45 44 45 44 45 45 46 |26 25 28 12 00 11 |50 48 48 |44 51 52 53 |49 48 48 48 47 |50 49 49 49 48 48 47 |50 50 51 |49 48 |57 |  63E
63F | 48 49 46 48 46 48 47 46 47 48 48 48 |44 43 43 43 43 43 43 43 44 |25 26 27 12 11 00 |47 47 46 |39 50 50 50 |48 46 48 47 47 |48 48 48 48 48 47 46 |48 49 49 |48 46 |56 |  63F
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
64A | 36 35 33 35 35 34 33 34 34 34 34 34 |49 48 48 47 47 48 48 48 48 |48 48 50 48 50 47 |00 13 14 |41 42 42 42 |48 48 50 49 49 |50 50 50 49 48 49 49 |41 42 41 |50 49 |56 |  64A
64B | 36 35 34 33 34 34 32 33 33 33 34 34 |49 48 48 48 47 48 48 48 49 |47 47 49 48 48 47 |13 00 10 |40 42 42 42 |48 49 50 49 50 |50 49 49 49 48 50 49 |42 41 41 |50 49 |56 |  64B
64C | 36 35 34 34 34 34 33 33 33 33 34 34 |49 49 48 47 48 48 47 48 49 |48 48 49 48 48 46 |14 10 00 |39 41 42 41 |49 49 50 49 49 |49 49 49 48 48 49 49 |42 41 40 |51 50 |56 |  64C
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
65A | 34 33 33 37 33 33 33 33 33 34 34 31 |34 36 32 32 33 32 33 33 32 |41 39 41 46 44 39 |41 40 39 |00 31 28 28 |40 39 36 40 39 |37 41 39 37 44 37 37 |33 31 30 |45 44 |58 |  65A
65B | 43 42 41 43 41 41 40 41 41 41 42 42 |49 48 48 47 48 48 48 48 48 |50 49 51 51 51 50 |42 42 41 |31 00 11 19 |50 48 49 48 49 |48 49 48 47 48 48 47 |33 34 32 |51 50 |59 |  65B
65C | 43 40 40 42 41 41 41 40 40 41 41 41 |48 47 47 47 47 47 47 47 47 |50 49 52 51 52 50 |42 42 42 |28 11 00 18 |50 48 49 48 48 |49 48 49 48 48 48 47 |33 33 33 |53 51 |59 |  65C
65D | 42 42 41 42 41 41 41 41 41 41 42 41 |47 47 47 47 47 47 48 48 47 |49 49 49 50 53 50 |42 42 41 |28 19 18 00 |48 47 47 47 47 |49 48 48 47 47 48 48 |32 32 33 |51 51 |58 |  65D
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
66A | 48 49 47 47 48 47 47 47 47 46 48 47 |44 45 44 43 44 44 44 43 43 |46 47 47 50 49 48 |48 48 49 |40 50 50 48 |00 19 19 19 20 |39 39 39 39 40 38 39 |45 46 46 |34 34 |60 |  66A
66B | 48 48 48 48 48 48 47 47 47 47 48 48 |45 45 44 45 45 44 44 45 44 |45 46 48 48 48 46 |48 49 49 |39 48 48 47 |19 00 10 08 11 |39 37 39 39 38 38 38 |46 45 46 |33 33 |57 |  66B
66C | 49 48 47 49 47 47 46 47 47 46 47 46 |45 45 45 44 45 44 44 44 43 |45 46 46 49 48 48 |50 50 50 |36 49 49 47 |19 10 00 10 12 |40 39 40 39 40 39 39 |45 45 47 |33 34 |59 |  66C
66D | 48 47 47 48 47 47 46 47 47 47 47 47 |45 45 44 44 45 44 44 45 44 |45 46 48 49 48 47 |49 49 49 |40 48 48 47 |19 08 10 00 11 |40 38 39 39 39 39 38 |45 45 46 |32 33 |58 |  66D
66E | 49 48 47 49 47 47 46 47 47 47 47 47 |45 44 44 43 44 44 44 44 43 |45 46 47 48 47 47 |49 50 49 |39 49 48 47 |20 11 12 11 00 |40 39 38 40 39 39 39 |47 46 46 |34 34 |57 |  66E
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
67A | 47 48 48 48 47 48 48 48 48 49 48 49 |45 45 45 45 45 45 45 45 46 |46 47 48 50 50 48 |50 50 49 |37 48 49 49 |39 39 40 40 40 |00 15 12 15 22 23 22 |49 49 49 |42 42 |60 |  67A
67B | 49 49 48 48 48 49 48 47 48 48 48 48 |44 45 44 44 44 44 44 44 44 |46 47 48 50 49 48 |50 49 49 |41 49 48 48 |39 37 39 38 39 |15 00 10 13 20 22 22 |49 48 49 |41 41 |59 |  67B
67C | 48 49 48 47 48 47 46 47 47 47 47 48 |45 45 46 45 45 45 45 45 45 |47 47 48 50 49 48 |50 49 49 |39 48 49 48 |39 39 40 39 38 |12 10 00 11 21 22 22 |49 49 49 |40 41 |58 |  67C
67D | 47 48 47 47 47 47 46 46 47 47 47 47 |45 45 45 45 45 45 44 44 45 |46 47 47 49 49 48 |49 49 48 |37 47 48 47 |39 39 39 39 40 |15 13 11 00 22 22 22 |48 48 48 |41 41 |58 |  67D
67E | 47 48 46 47 46 47 46 46 47 47 47 47 |45 46 46 46 45 46 45 46 46 |46 46 47 48 48 48 |48 48 48 |44 48 48 47 |40 38 40 39 39 |22 20 21 22 00 24 24 |49 47 48 |42 41 |58 |  67E
67F | 49 49 46 48 47 49 47 48 49 48 49 48 |45 45 45 45 44 44 44 44 45 |46 46 48 49 48 47 |49 50 49 |37 48 48 48 |38 38 39 39 39 |23 22 22 22 24 00 05 |48 48 47 |40 40 |58 |  67F
67G | 49 49 46 48 47 48 46 47 48 47 48 47 |46 45 45 45 44 45 45 45 45 |45 46 47 48 47 46 |49 49 49 |37 47 47 48 |39 38 39 38 39 |22 22 22 22 24 05 00 |49 48 48 |40 39 |58 |  67G
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
68A | 42 42 41 42 42 42 41 41 42 42 42 42 |47 47 46 46 46 45 45 46 46 |50 49 50 50 50 48 |41 42 42 |33 33 33 32 |45 46 45 45 47 |49 49 49 48 49 48 49 |00 20 19 |49 49 |59 |  68A
68B | 43 42 42 42 41 42 42 41 42 42 43 42 |47 47 46 45 47 46 46 46 47 |49 48 50 50 50 49 |42 41 41 |31 34 33 32 |46 45 45 45 46 |49 48 49 48 47 48 48 |20 00 23 |50 50 |58 |  68B
68C | 44 42 40 41 41 42 42 41 42 41 42 42 |48 48 46 46 47 46 46 46 47 |52 50 52 51 51 49 |41 41 40 |30 32 33 33 |46 46 47 46 46 |49 49 49 48 48 47 48 |19 23 00 |49 50 |59 |  68C
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
69A | 50 49 47 48 47 47 46 47 48 48 47 47 |48 47 46 46 47 46 46 46 46 |46 46 47 48 49 48 |50 50 51 |45 51 53 51 |34 33 33 32 34 |42 41 40 41 42 40 40 |49 50 49 |00 16 |61 |  69A
69B | 48 48 46 47 47 47 45 46 46 46 47 47 |47 47 47 45 46 46 45 45 46 |46 47 47 48 48 46 |49 49 50 |44 50 51 51 |34 33 34 33 34 |42 41 41 41 41 40 39 |49 50 50 |16 00 |59 |  69B
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
6AA | 58 57 57 58 56 57 57 57 58 57 57 57 |60 59 60 59 58 60 59 60 60 |56 58 57 56 57 56 |56 56 56 |58 59 59 58 |60 57 59 58 57 |60 59 58 58 58 58 58 |59 58 59 |61 59 |00 |  6AA
==================================================================================================================================================================================
      1A 1B 1C 1D 1E 1F 1G 1H 1I 1J 1K 1L |2A 2B 2C 2D 2E 2F 2G 2H 2I |3A 3B 3C 3D 3E 3F |4A 4B 4C |5A 5B 5C 5D |6A 6B 6C 6D 6E |7A 7B 7C 7D 7E 7F 7G |8A 8B 8C |9A 9B |AA |

Code:

     1  2  3  4  5  6  7  8  9  A       min
============================================
1 | 00 47 45 32 31 46 46 40 45 56  | 1   31
2 | 47 00 43 47 32 43 44 45 45 58  | 2   32
3 | 45 43 00 46 39 45 45 48 46 56  | 3   39
4 | 32 47 46 00 39 48 48 40 49 56  | 4   32
5 | 31 32 39 39 00 36 37 30 44 58  | 5   30
6 | 46 43 45 48 36 00 37 45 32 57  | 6   32
7 | 46 44 45 48 37 37 00 47 39 58  | 7   37
8 | 40 45 48 40 30 45 47 00 49 58  | 8   30
9 | 45 45 46 49 44 32 39 49 00 59  | 9   32
A | 56 58 56 56 58 57 58 58 59 00  | A   56
============================================
     1  2  3  4  5  6  7  8  9  A

5-30-8 =:58
1-32-4 =:14
9-32-6 =:69

**gsgs** · March 1, 2012, 06:03 AM

Re: types of flu-A

Code:

segment 1  A   B   C   D   E   F   G   H   I   j   K   L   M
------------------------------------------------------------
  1 >1A   00  15  14  18  19  15  17  16  17  16  16  16  34
  2 >1B   15  00  13  18  18  16  16  15  17  16  16  16  35
  3 >1C   14  13  00  17  16  13  14  13  15  14  14  15  34
  4 >1D   18  18  17  00  20  17  17  16  17  17  17  18  34
  5 >1E   19  18  16  20  00  17  17  16  16  17  17  18  34
  6 >1F   15  16  13  17  17  00  10  10  12  11  09  10  34
  7 >1G   17  16  14  17  17  10  00  10  12  08  10  11  34
  8 >1H   16  15  13  16  16  10  10  00  12  11  10  12  34
  9 >1I   17  17  15  17  16  12  12  12  00  12  12  13  34
 10 >1J   16  16  14  17  17  11  08  11  12  00  10  11  33
 11 >1K   16  16  14  17  17  09  10  10  12  10  00  02  34
 12 >1L   16  16  15  18  18  10  11  12  13  11  02  00  34
 13 >1M   34  35  34  34  34  34  34  34  34  33  34  34  00
------------------------------------------------------------
           1   2   3   4   5   6   7   8   9  10  11  12  13

Code:

segment 2   A   B   C   D   E   F   G   H   I   J
-------------------------------------------------
  1 >2A    00  12  16  18  17  17  17  17  17  30
  2 >2B    12  00  14  16  14  14  14  14  14  29
  3 >2C    16  14  00  11  09  10  11  11  16  30
  4 >2D    18  16  11  00  08  10  13  11  17  30
  5 >2E    17  14  09  08  00  06  09  08  16  30
  6 >2F    17  14  10  10  06  00  10  08  15  30
  7 >2G    17  14  11  13  09  10  00  11  16  31
  8 >2H    17  14  11  11  08  08  11  00  16  29
  9 >2I    17  14  16  17  16  15  16  16  00  29
 10 >2J    30  29  30  30  30  30  31  29  29  00
-------------------------------------------------
            1   2   3   4   5   6   7   8   9  10

Code:

segment 3   A   B   C   D   E   F   G   H   I   J   K   L
---------------------------------------------------------
  1 >3A    00  08  11  13  13  13  13  13  13  13  08  32
  2 >3B    08  00  15  16  15  15  15  16  15  15  13  33
  3 >3C    11  15  00  16  16  17  15  16  17  16  13  33
  4 >3D    13  16  16  00   7  09  14  10  11  13  12  33
  5 >3E    13  15  16  07  00  04  13  09  09  12  11  33
  6 >3F    13  15  17  09  04  00  14  11  12  13  13  33
  7 >3G    13  15  15  14  13  14  00  13  14  11  13  33
  8 >3H    13  16  16  10  09  11  13  00  11  13  12  32
  9 >3I    13  15  17  11  09  12  14  11  00  15  12  33
 10 >3J    13  15  16  13  12  13  11  13  15  00  13  34
 11 >3K    08  13  13  12  11  13  13  12  12  13  00  32
 12 >3L    32  33  33  33  33  33  33  32  33  34  32  00
---------------------------------------------------------
            1   2   3   4   5   6   7   8   9  10  11  12

Code:

segment 5   A   B   C   D   E   F   G   H   I
---------------------------------------------
  1 >5A    00  17  17  17  16  17  18  17  30
  2 >5B    17  00  16  16  13  14  16  14  29
  3 >5C    17  16  00  16  14  14  15  13  29
  4 >5D    17  16  16  00  12  13  15  12  30
  5 >5E    16  13  14  12  00  09  12  08  31
  6 >5F    17  14  14  13  09  00  14  10  30
  7 >5G    18  16  15  15  12  14  00  13  30
  8 >5H    17  14  13  12  08  10  13  00  31
  9 >5I    30  29  29  30  31  30  30  31  00
---------------------------------------------
            1   2   3   4   5   6   7   8   9

Code:

segment 7   A   B   C   D   E   F   G   H
-----------------------------------------
  1 >7A    00  09  10  12  07  09  10  32
  2 >7B    09  00  11  13  08  10  11  33
  3 >7C    10  11  00  15  07  08  11  33
  4 >7D    12  13  15  00  13  13  14  33
  5 >7E    07  08  07  13  00  05  08  32
  6 >7F    09  10  08  13  05  00  07  32
  7 >7G    10  11  11  14  08  07  00  32
  8 >7H    32  33  33  33  32  32  32  00
-----------------------------------------
            1   2   3   4   5   6   7   8

Code:

segment 8  1A  1B  1C  1D  1E  1F  1G  2A  2B  2C  2D  2E  3A
-------------------------------------------------------------
  1 >81A   00  19  16  12  14  14  10  26  27  28  27  28  39
  2 >81B   19  00  19  15  17  18  22  29  30  30  29  30  39
  3 >81C   16  19  00  12  13  14  18  27  28  29  29  29  40
  4 >81D   12  15  12  00  08  08  15  26  27  28  27  27  39
  5 >81E   14  17  13  08  00  05  16  26  27  28  27  27  39
  6 >81F   14  18  14  08  05  00  16  27  28  29  28  29  39
  7 >81G   10  22  18  15  16  16  00  29  30  31  31  31  39
  8 >82A   26  29  27  26  26  27  29  00  08  09  05  09  37
  9 >82B   27  30  28  27  27  28  30  08  00  09  09  05  37
 10 >82C   28  30  29  28  28  29  31  09  09  00  10  07  37
 11 >82D   27  29  29  27  27  28  31  05  09  10  00  09  38
 12 >82E   28  30  29  27  27  29  31  09  05  07  09  00  37
 13 >83A   39  39  40  39  39  39  39  37  37  37  38  37  00
-------------------------------------------------------------
            1   2   3   4   5   6   7   8   9  10  11  12  13

(the last entry in these tables is always the bat-virus)

**gsgs** · March 2, 2012, 12:29 AM

Re: types of flu-A

codon-frequency differences

Code:

    bat 17g eq1 eq2  bm p30 546     7bi
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
bat 000 236 190 179 225 223 231 226 195 226 217 228 209 226 235 240 237 191 197 237 232 235 223 220 211 197 197 210 203 225 208 204 209 218 201 204 205 198 193 183 185 185 172 179 180 210 207  43 >A/little yellowshouldered bat/Guatemala/153/2009/05/(H17N10)    >2003/04/23,12897,USA,A/NY/214/03
17g 236 000 131 100 122 065 117 132 129 128 108 100 113 128 136 134 108 152 142 132 136 146 121 139 118 121 121 092 119 128 130 089 093 095 110 110 126 139 141 138 126 127 130 125 125 123 117  6 >A/duck/LA/17G/1987,1987//,H3N8    >A/pekin duck/California/P30/2006,2006/03/06,H4N2
eq1 190 131 000 123 106 140 096 093 094 112 112 114 089 103 108 110 145 086 103 117 114 111 122 095 158 108 124 138 105 104 155 137 141 150 148 155 130 141 141 132 133 138 133 130 133 114 106  18 >A/equine/Miami/1/1963,1963//,H3N8    >A/Avian/Index/South America
eq2 179 100 123 000 126 093 137 131 143 122 110 125 122 131 145 141 114 143 141 139 144 146 118 145 114 098 102 099 105 128 119 096 095 098 097 099 111 129 119 114 112 117 110 115 117 115 120  6 >A/equine/Gansu/7/2008,2008//,H3N8    >A/pekin duck/California/P30/2006,2006/03/06,H4N2
bm  225 122 106 126 000 133 086 094 091 114 051 056 089 099 098 111 122 103 108 103 109 107 110 105 118 070 076 119 108 095 118 122 124 129 143 147 084 087 092 092 106 105 109 113 114 092 090  11 >A/Brevig Mission/1/1918,1918//,H1N1    >A/Human/Indexearly/1935(H1N1)
p30 223 065 140 093 133 000 129 139 142 136 117 116 128 141 154 140 121 160 152 142 143 151 125 145 107 116 119 097 122 133 118 084 095 099 108 109 127 136 130 130 117 114 114 112 113 122 123  2 >A/pekin duck/California/P30/2006,2006/03/06,H4N2    >A/duck/LA/17G/1987,1987//,H3N8
546 231 117 096 137 086 129 000 079 077 081 103 092 085 097 098 092 122 103 108 106 108 096 117 090 155 118 118 136 098 106 152 133 138 145 153 159 134 134 141 139 137 144 136 142 146 104 103  9 >A/duck/Memphis/546/1974(///    >A/turkey/Ontario/6118/1968///
    226 132 093 131 094 139 079 000 087 068 115 106 085 076 084 080 119 102 092 081 092 068 102 076 152 117 118 160 079 094 156 158 160 164 163 168 128 128 130 128 128 137 130 132 134 079 079  10 >A/pintail duck/ALB/628/1979/08/13/    >Index 7 birds similar to BM18
    195 129 094 143 091 142 077 087 000 099 110 100 091 097 107 101 139 085 093 103 111 096 123 088 159 118 125 148 102 102 162 142 151 154 170 175 117 116 124 118 118 123 123 125 128 100 096  7 >A/turkey/Ontario/6118/1968///    >A/duck/Memphis/546/1974(///
7bi 226 128 112 122 114 136 081 068 099 000 128 114 103 087 095 087 104 112 103 095 092 083 114 093 163 125 132 158 106 121 162 154 158 155 166 168 147 146 146 141 141 149 144 140 146 097 100  8 >Index 7 birds similar to BM18    >A/pintail duck/ALB/628/1979/08/13/
eah 217 108 112 110 051 117 103 115 110 128 000 072 092 106 109 124 115 121 114 117 119 118 109 119 108 065 072 106 109 105 107 106 111 114 129 130 072 087 092 096 097 106 105 105 106 102 096  5 >A/Human/Indexearly/1935(H1N1)    >A/Brevig Mission/1/1918,1918//,H1N1
eas 228 100 114 125 056 116 092 106 100 114 072 000 103 122 123 122 127 128 129 130 131 130 124 115 128 089 093 100 119 114 130 103 104 108 128 129 100 110 114 111 109 114 116 113 116 104 104  5 >A/Sw/Indexearly/1935(H1N1)    >A/Brevig Mission/1/1918,1918//,H1N1
    209 113 089 122 089 128 085 085 091 103 092 103 000 049 068 100 094 104 086 079 087 098 086 089 133 104 111 125 082 068 144 119 124 124 137 139 111 122 123 119 119 114 111 111 112 085 087  14 >2000,A/Avian/Index/Africa,HxNx,Egypt,Avian    >A/Avian/Index/Asia
    226 128 103 131 099 141 097 076 097 087 106 122 049 000 056 079 087 107 073 049 057 070 084 082 143 109 117 152 073 062 148 144 152 146 154 159 105 106 106 108 115 114 116 116 117 072 068  13 >A/Avian/Index/Asia    >2000,A/Avian/Index/Africa,HxNx,Egypt,Avian
    235 136 108 145 098 154 098 084 107 095 109 123 068 056 000 084 088 102 073 058 061 074 089 075 157 124 133 155 095 084 155 155 158 155 172 177 122 122 124 124 129 125 128 125 129 095 089  14 >A/Avian/Index/Europe    >A/Avian/Index/Asia
    240 134 110 141 111 140 092 080 101 087 124 122 100 079 084 000 099 103 076 070 070 057 092 059 165 134 138 169 085 090 170 164 171 168 179 182 126 126 129 126 119 140 140 136 139 092 082  22 >A/Avian/Index/North America    >1980//,A/Avian/Index/North America,HxNx,USA,Avian
eoz 237 108 145 114 122 121 122 119 139 104 115 127 094 087 088 099 000 132 109 077 081 107 073 116 132 131 140 135 110 114 145 130 135 136 144 144 123 129 128 128 126 125 125 119 120 100 106  23 >A/Avian/Index/Ozeania    >1980//,A/Avian/Index/Oceania/,HxNx,Australia
sa  191 152 086 143 103 160 103 102 085 112 121 128 104 107 102 103 132 000 089 106 106 105 114 089 163 135 137 163 110 114 158 163 166 168 166 168 134 130 135 125 129 137 133 131 135 114 109  9 >A/Avian/Index/South America    >A/turkey/Ontario/6118/1968///
    197 142 103 141 108 152 108 092 093 103 114 129 086 073 073 076 109 089 000 065 059 081 085 072 156 124 125 160 082 080 154 158 165 162 179 182 113 101 108 105 110 118 119 115 117 087 079  21 >1980//,A/Avian/Index/Africa,HxNx,South Africa,Avian    >1980//,A/Avian/Index/Europe,HxNx,Germany,Avian
    237 132 117 139 103 142 106 081 103 095 117 130 079 049 058 070 077 106 065 000 034 068 076 078 151 122 133 163 091 074 149 163 166 158 171 174 105 100 104 109 118 118 122 123 125 082 075  21 >1980//,A/Avian/Index/Asia,HxNx,China,Avian    >1980//,A/Avian/Index/Europe,HxNx,Germany,Avian
    232 136 114 144 109 143 108 092 111 092 119 131 087 057 061 070 081 106 059 034 000 073 073 080 162 130 138 170 102 079 157 165 171 168 183 185 117 111 114 118 125 128 130 130 132 095 083  20 >1980//,A/Avian/Index/Europe,HxNx,Germany,Avian    >1980//,A/Avian/Index/Asia,HxNx,China,Avian
    235 146 111 146 107 151 096 068 096 083 118 130 098 070 074 057 107 105 081 068 073 000 095 054 168 128 134 182 092 092 168 174 184 181 186 190 119 113 123 122 124 136 138 136 138 084 075  24 >1980//,A/Avian/Index/North America,HxNx,USA,Avian    >A/duck/LA/32M/1987,1987//,H6N2,USA
    223 121 122 118 110 125 117 102 123 114 109 124 086 084 089 092 073 114 085 076 073 095 000 102 140 128 133 145 096 083 142 139 150 150 155 159 107 104 119 119 115 117 117 117 116 089 084  21 >1980//,A/Avian/Index/Oceania/,HxNx,Australia    >1980//,A/Avian/Index/Europe,HxNx,Germany,Avian
    220 139 095 145 105 145 090 076 088 093 119 115 089 082 075 059 116 089 072 078 080 054 102 000 162 127 136 164 091 089 169 160 167 167 175 179 122 124 125 119 118 131 132 133 136 089 076  22 >A/duck/LA/32M/1987,1987//,H6N2,USA    >1980//,A/Avian/Index/North America,HxNx,USA,Avian
lH1 211 118 158 114 118 107 155 152 159 163 108 128 133 143 157 165 132 163 156 151 162 168 140 162 000 076 084 094 129 149 038 087 088 094 095 098 100 117 114 106 103 098 097 098 100 122 130  31 >A/Kansas/UR06-0068/2007(H1N1)    >A/Brisbane/59/2007/07/01(H1N1)
h77 197 121 108 098 070 116 118 117 118 125 065 089 104 109 124 134 131 135 124 122 130 128 128 127 076 000 048 091 106 117 077 088 088 096 103 106 073 089 087 084 096 098 096 098 103 098 100  27 >A/Index/1977(H1N1)    >A/Denver/1957(H1N1)
    197 121 124 102 076 119 118 118 125 132 072 093 111 117 133 138 140 137 125 133 138 134 133 136 084 048 000 103 099 118 095 092 097 101 107 110 082 092 088 085 095 099 091 097 100 090 100  26 >A/Denver/1957(H1N1)    >A/Index/1977(H1N1)
s76 210 092 138 099 119 097 136 160 148 158 106 100 125 152 155 169 135 163 160 163 170 182 145 164 094 091 103 000 130 141 101 034 021 040 066 067 115 130 122 121 120 115 110 116 119 126 137  33 >A/New Jersey/11/1976(H1N1)    >A/Sw/Minnesota/27/1976(H1N1///
    203 119 105 105 108 122 098 079 102 106 109 119 082 073 095 085 110 110 082 091 102 092 096 091 129 106 099 130 000 091 135 130 130 130 137 138 096 101 106 096 095 101 095 100 104 054 049  47 >A/******/index/2009/02/01    >A/Sw/Index/triple-reassortant/1998(H3N2)
s81 225 128 104 128 095 133 106 094 102 121 105 114 068 062 084 090 114 114 080 074 079 092 083 089 149 117 118 141 091 000 153 134 143 141 147 152 093 100 106 107 115 120 122 126 126 091 079  14 >A/swine/Germany/2/1981(H1N1)=1578     >A/Avian/Index/Asia
    208 130 155 119 118 118 152 156 162 162 107 130 144 148 155 170 145 158 154 149 157 168 142 169 038 077 095 101 135 153 000 100 098 104 107 108 105 111 111 104 107 100 099 105 107 131 134  25 >A/Brisbane/59/2007/07/01(H1N1)    >A/Kansas/UR06-0068/2007(H1N1)
s77 204 089 137 096 122 084 133 158 142 154 106 103 119 144 155 164 130 163 158 163 165 174 139 160 087 088 092 034 130 134 100 000 033 046 064 065 113 128 123 122 121 117 112 112 115 122 134  33 >A/Sw/Tennessee/25/1977(H1N1)    >A/Sw/Minnesota/27/1976(H1N1///
s76 209 093 141 095 124 095 138 160 151 158 111 104 124 152 158 171 135 166 165 166 171 184 150 167 088 088 097 021 130 143 098 033 000 039 057 056 116 136 128 124 126 119 109 119 121 127 141  28 >A/Sw/Minnesota/27/1976(H1N1///    >A/New Jersey/11/1976(H1N1)
s81 218 095 150 098 129 099 145 164 154 155 114 108 124 146 155 168 136 168 162 158 168 181 150 167 094 096 101 040 130 141 104 046 039 000 054 049 114 127 119 116 116 114 107 119 120 122 135  33 >A/swine/Iowa/24297/1991(H1N1)    >A/Sw/Minnesota/27/1976(H1N1///
lsw 201 110 148 097 143 108 153 163 170 166 129 128 137 154 172 179 144 166 179 171 183 186 155 175 095 103 107 066 137 147 107 064 057 054 000 015 118 140 134 129 132 128 117 121 122 132 147  36 >A/swine/Shanghai/1/2005(H1N1/07//    >A/Sw/Guangdong/34/2006(H1N1)
lsw 204 110 155 099 147 109 159 168 175 168 130 129 139 159 177 182 144 168 182 174 185 190 159 179 098 106 110 067 138 152 108 065 056 049 015 000 121 142 135 128 130 129 119 123 124 134 148  35 >A/Sw/Guangdong/34/2006(H1N1)    >A/swine/Shanghai/1/2005(H1N1/07//
h68 205 126 130 111 084 127 134 128 117 147 072 100 111 105 122 126 123 134 113 105 117 119 107 122 100 073 082 115 096 093 105 113 116 114 118 121 000 047 056 060 069 075 079 083 085 091 081  38 >1968//,182,CHN,A/Beijing/1/68    >1972//,1643,RUS,A/Udorn/307/72
h72 198 139 141 129 087 136 134 128 116 146 087 110 122 106 122 126 129 130 101 100 111 113 104 124 117 089 092 130 101 100 111 128 136 127 140 142 047 000 039 046 061 067 076 080 080 100 086  39 >1972//,1643,RUS,A/Udorn/307/72    >1979//,4199,THA,A/Bangkok/01/79
h79 193 141 141 119 092 130 141 130 124 146 092 114 123 106 124 129 128 135 108 104 114 123 119 125 114 087 088 122 106 106 111 123 128 119 134 135 056 039 000 021 045 053 062 070 070 096 091  40 >1979//,4199,THA,A/Bangkok/01/79    >1983//,5660,HKG,A/HK/14/83
h83 183 138 132 114 092 130 139 128 118 141 096 111 119 108 124 126 128 125 105 109 118 122 119 119 106 084 085 121 096 107 104 122 124 116 129 128 060 046 021 000 031 042 050 060 060 089 082  39 >1983//,5660,HKG,A/HK/14/83    >1979//,4199,THA,A/Bangkok/01/79
h89 185 126 133 112 106 117 137 128 118 141 097 109 119 115 129 119 126 129 110 118 125 124 115 118 103 096 095 120 095 115 107 121 126 116 132 130 069 061 045 031 000 041 046 053 055 089 086  40 >1989//,7852,CHN,A/Beijing/353/89    >1983//,5660,HKG,A/HK/14/83
h97 185 127 138 117 105 114 144 137 123 149 106 114 114 114 125 140 125 137 118 118 128 136 117 131 098 098 099 115 101 120 100 117 119 114 128 129 075 067 053 042 041 000 029 038 034 096 092  43 >1997/11/29,10924,USA,A/NY/503/97    >2003/04/23,12897,USA,A/NY/214/03
h03 172 130 133 110 109 114 136 130 123 144 105 116 111 116 128 140 125 133 119 122 130 138 117 132 097 096 091 110 095 122 099 112 109 107 117 119 079 076 062 050 046 029 000 038 035 095 097  42 >2003/04/23,12897,USA,A/NY/214/03    >1997/11/29,10924,USA,A/NY/503/97
h98 179 125 130 115 113 112 142 132 125 140 105 113 111 116 125 136 119 131 115 123 130 136 117 133 098 098 097 116 100 126 105 112 119 119 121 123 083 080 070 060 053 038 038 000 010 103 105  45 >Index/2009/Egypt/Iowa    >Index/USA-2007
h07 180 125 133 117 114 113 146 134 128 146 106 116 112 117 129 139 120 135 117 125 132 138 116 136 100 103 100 119 104 126 107 115 121 120 122 124 085 080 070 060 055 034 035 010 000 104 105  44 >Index/USA-2007    >Index/2009/Egypt/Iowa
305 210 123 114 115 092 122 104 079 100 097 102 104 085 072 095 092 100 114 087 082 095 084 089 089 122 098 090 126 054 091 131 122 127 122 132 134 091 100 096 089 089 096 095 103 104 000 035  47 >A/swine/Ontario/33853/2005(H3N2)    >A/Sw/Index/triple-reassortant/1998(H3N2)
398 207 117 106 120 090 123 103 079 096 100 096 104 087 068 089 082 106 109 079 075 083 075 084 076 130 100 100 137 049 079 134 134 141 135 147 148 081 086 091 082 086 092 097 105 105 035 000  46 >A/Sw/Index/triple-reassortant/1998(H3N2)    >A/swine/Ontario/33853/2005(H3N2)



lex,flub

**gsgs** · March 2, 2012, 03:29 AM

Re: types of flu-A

here is a better table:

http://magictour.free.fr/panflu/codon.txt

suitable for printing it on 2 sheets of paper horizontally
with wordpad, small format

similar codon-frequencies are represented by smaller numbers in the table.
These small numbers = similarities arise from
1.) genetic similarity, recent ancester
2.) longterm evolution in related species

e.g. eq1 is avianlike but after evolution of 45 years in horses eq2 is more bat-human-swine-equine like
same for BM,107 or esw,s06

but also 17G,P30 !
Indicating that this virus may have evolved the last 19 years in mammalean species

**gsgs** · March 15, 2012, 01:48 AM

Re: types of flu-A

Code:

2012/03/14 : 182093 flu-A sequences at genbank


      A    B    C    D    E    F    G    H    I    J    K    L   
--------------------------------------------------------------
1  4564, 318,7881,   4,  11, 242,1539,  11,  11,  53,2687, 106
2  1435, 319,   8,7135, 391,3597,4383,  15, 214
3  1566,2978, 306,3358,7189,  12, 226,1297, 253,  14,  33
5  5030,   8, 221,  65, 151,4574,  27,7427
7   818,7877,  41,  17,3895,9972,  30
81 4401,  10,  68,8341,2036,1710,   4
82  392,1334,  15,  10,   4


41 11334,4863, 499, 205,   2
42   144,  12,   3,  42,  11,  16,   3, 128,   8
43 11589, 401, 269, 427,   1,3470
44   571,  15, 165,  15
45    30, 134, 442,   4,  11,  47,  67, 147,  19,4311,  18
46   642, 172,  16,   5,  18,  12,  96
47   412,  15,  24,  24,  10, 676
48   102
49     7, 421,1708,  32,  34, 114, 124,   6,  11,  17
4A   212,   1,   3,   8,  66,   2
4B    54,  13, 152
4C    91,  18
4D    10,  34,  33
4E     9,   1
4F    13
4G     5,  16,   5

61 3146, 717,   7,  18, 488,7049, 145, 165,  33,2847,  30,  15
62 5656, 628, 152, 689, 314, 180, 904,   3,  92
63  291, 242,  10,  13,   2,   2
64  105,  22,  17,
65    1,  50,  10, 126
66  565,  47, 183,   8,   9
67    3,   6,  12,  74,  14, 182,  26
68  694, 208, 119
69  258,  15

**gsgs** · March 15, 2012, 05:08 AM

Re: types of flu-A

downloading all flu-A sequences from genbank
--------------------------------------------------------------------------

---goto: http://www.ncbi.nlm.nih.gov/genomes/...ph-select.cgi?

---click "nucleotide"

---click "additional filters"

---under "lab strains" select "include"

---click "add query"

[it says under "number of sequences" : 182093 , (on 2012/Mar.14) ]

---click "customize fasta defline" and specify the sequence-data that you want together with the sequences
I use:
>{accession}|{strain}|{year}/{month}/{day}|{gi}|{host}|{serotype}|{segment}|{country}|{ taxname}|{definition}|{age}|{gender}

---in the field right to "download results" select "nucleotide /FASTA)"

---click "download results"
the download is being prepared , this takes a while

--- specify the file name what you want it to be stored into

--- 280MB are being downloaded .... yesterday I got 800KB per second, 6 min in total
today I'm getting ~630 KB per sec
you may have to try several times (clicking download,selecting file name,save) if the save stops
too early with a small file - I had this issue with the AOL-browser.
You may also have to close other windows or finish other programs since this is memory-intensive

-------------------------------------------------------------

now I postprocess the output-file, one line for the parameters and one line for the nucleotides
of each sequence.
I separated the parameters by "|" , although I prefer "," , but there are some other "," among the parameters
So I change all "," to "_" and then change all "|" to "," .
Now I separate parameter lines and sequence lines into two files, so the parameter file
becomes shorter (~10MB) and manipulating it will be faster.

number,parametername,total nonempty,different
--------------------------------------------
1.) , access , 182983,182093
2.) , strain , 182093,46275
3.) , date , 182093,4437
4.) , gi , 182093,182093
5.) , host , 182092,26
6.) , serotype , 182017,187
7.) , segment , 182093,8
8.) , country , 181999,149
9.) , taxname , 182093,46472
10.) , definition , 182093,173105
11.) , age , 28150,488
12.) , gender , 18598,4
13.) , cds location , 0 , 0

2.)+7.) , 172761
9.)+7.) , 173819
2+3+5+6+8+11+12 , 48483 (14405 times 8-fold (=gonome))

no host : 1
no country : 94
no serotype : 76
very short :
mixed : 3081
contains a comma : 435

------------------------------------------------------------------------------------------------------------------------------------
goto

Influenza virus database - NCBI

http://www.ncbi.nlm.nih.gov/genomes/FLU/Database/nph-select.cgi?go=genomeset

Database search, browse, sequence analysis

--- click additional filters : show
select include lab strains
--- under "genome sets" select "all"
---click "add query"
it shows 15458 genomes and 182093 sequences

but the output is the same as with the first method

complete genomes only gives 11164 genomes, 89312 sequences,
but sorted by accession code

it's not clear to me how they assign sequences to viruses
("taxon " ?) (strain-name ?)

**gsgs** · February 19, 2014, 02:08 AM

Re: types of flu-A

Code:

differences in the 2nd codons of the HA-types, aligned with mafft

              1   2   3   4   5   6   7   8   9  10  11  12  13  14  15  16
---------------------------------------------------------------------------
  1 >41D      0  85 183 194  94 108 191 150 145 192 127 148 153 194 201 154
  2 >42B     85   0 187 194  55 114 193 156 150 193 126 157 155 193 203 152
  3 >43B    183 187   0 103 188 189 166 199 195 169 180 188 195 107 168 204
  4 >44C    194 194 103   0 190 191 162 198 186 174 182 188 195  61 166 197
  5 >45J     94  55 188 190   0 120 180 159 148 192 120 154 151 188 204 150
  6 >46E    108 114 189 191 120   0 194 144 145 197 139 146 156 190 200 163
  7 >47D    191 193 166 162 180 194   0 209 213 127 190 205 200 163  60 207
  8 >48A    150 156 199 198 159 144 209   0 107 213 153  96 162 202 208 161
  9 >49E    145 150 195 186 148 145 213 107   0 218 142 101 148 201 219 145
 10 >4AF    192 193 169 174 192 197 127 213 218   0 184 200 200 168 113 208
 11 >4BA    127 126 180 182 120 139 190 153 142 184   0 155 114 186 203 113
 12 >4CA    148 157 188 188 154 146 205  96 101 200 155   0 168 197 203 161
 13 >4DC    153 155 195 195 151 156 200 162 148 200 114 168   0 201 210  49
 14 >4EA    194 193 107  61 188 190 163 202 201 168 186 197 201   0 166 203
 15 >4FA    201 203 168 166 204 200  60 208 219 113 203 203 210 166   0 216
 16 >4GA    154 152 204 197 150 163 207 161 145 208 113 161  49 203 216   0
---------------------------------------------------------------------------
              1   2   3   4   5   6   7   8   9  10  11  12  13  14  15  16

Code:

              1   2   3   4   5   6   7   8   9  10  11  12  13  14  15  16  17  18
-----------------------------------------------------------------------------------
  1 >41D      0  85 183 194  94 108 191 150 145 192 127 148 153 194 201 154 147 146
  2 >42B     85   0 187 194  55 114 193 156 150 193 126 157 155 193 203 152 137 138
  3 >43B    183 187   0 103 188 189 166 199 195 169 180 188 195 107 168 204 215 215
  4 >44C    194 194 103   0 190 191 162 198 186 174 182 188 195  61 166 197 196 209
  5 >45J     94  55 188 190   0 120 180 159 148 192 120 154 151 188 204 150 143 140
  6 >46E    108 114 189 191 120   0 194 144 145 197 139 146 156 190 200 163 157 148
  7 >47D    191 193 166 162 180 194   0 209 213 127 190 205 200 163  60 207 201 200
  8 >48A    150 156 199 198 159 144 209   0 107 213 153  96 162 202 208 161 166 166
  9 >49E    145 150 195 186 148 145 213 107   0 218 142 101 148 201 219 145 169 169
 10 >4AF    192 193 169 174 192 197 127 213 218   0 184 200 200 168 113 208 209 214
 11 >4BA    127 126 180 182 120 139 190 153 142 184   0 155 114 186 203 113 161 167
 12 >4CA    148 157 188 188 154 146 205  96 101 200 155   0 168 197 203 161 172 171
 13 >4DC    153 155 195 195 151 156 200 162 148 200 114 168   0 201 210  49 165 167
 14 >4EA    194 193 107  61 188 190 163 202 201 168 186 197 201   0 166 203 200 212
 15 >4FA    201 203 168 166 204 200  60 208 219 113 203 203 210 166   0 216 211 218
 16 >4GA    154 152 204 197 150 163 207 161 145 208 113 161  49 203 216   0 156 162
 17 >4HA    147 137 215 196 143 157 201 166 169 209 161 172 165 200 211 156   0 108
 18 >4IA    146 138 215 209 140 148 200 166 169 214 167 171 167 212 218 162 108   0
-----------------------------------------------------------------------------------
              1   2   3   4   5   6   7   8   9  10  11  12  13  14  15  16  17  18

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types of flu-A

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