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  • #1

    new species with flu

    Code:
     
HM355902 Avian 7 USA 2006/11/11 87 Influenza A virus (A/American robin/Georgia/CTR-AIV15/2006) 
HM355901 Avian 7 USA 2006/07/14 108 Influenza A virus (A/American robin/Idaho/CTR-AIV14/2006) 
HM355904 Avian 7 USA 2006/07/02 108 Influenza A virus (A/American robin/Washington/CTR-AIV17/2006) 
HM355914 Avian 7 USA 2006/08/01 108 Influenza A virus (A/Audubon's warbler/Washington/CTR-AIV27/2006)   
HM355915 Avian 7 USA 2006/08/01 105 Influenza A virus (A/Bewick's wren/Oregon/CTR-AIV28/2006)   
Avian 7 USA 2006/08/04 108 Influenza A virus (A/Oregon junco/Washington/CTR-AIV24/2006) 
HM355912 Avian 7 USA 2006/08/04 108 Influenza A virus (A/Oregon junco/Washington/CTR-AIV25/2006) 
HM355893 Avian 7 USA 2006/07/29 108 Influenza A virus (A/Pacific-slope flycatcher/Washington/CTR-AIV06/2006) 
CY054277 Human 4 H3N2 USA 2007/03/03 987 Influenza A virus (A/Pennsylvania/4/2007(H3N2)) 
CY058074 Human 4 H3N2 USA 2007/03/03 987 Influenza A virus (A/Pennsylvania/4/2007(H3N2)) 
HM355898 Avian 7 USA 2006/07/05 108 Influenza A virus (A/Swainson's thrush/Idaho/CTR-AIV11/2006) 
HM355900 Avian 7 USA 2006/07/14 108 Influenza A virus (A/Swainson's thrush/Idaho/CTR-AIV13/2006) 
HM355903 Avian 7 USA 2006/06/05 108 Influenza A virus (A/Swainson's thrush/Idaho/CTR-AIV16/2006) 
HM355892 Avian 7 USA 2006/07/03 108 Influenza A virus (A/Swainson's thrush/Washington/CTR-AIV05/2006) 
HM355906 Avian 7 USA 2006/07/27 108 Influenza A virus (A/Swainson's thrush/Washington/CTR-AIV19/2006) 
HM355917 Avian 7 USA 2006/08/06 108 Influenza A virus (A/Swainson's thrush/Washington/CTR-AIV30/2006) 
HM355890 Avian 7 USA 2006/06/05 108 Influenza A virus (A/Western tanager/Washington/CTR-AIV03/2006) 
HM355891 Avian 7 USA 2006/06/05 108 Influenza A virus (A/Western tanager/Washington/CTR-AIV04/2006) 
HM355905 Avian 7 USA 2006/07/29 107 Influenza A virus (A/Western tanager/Washington/CTR-AIV18/2006) 
HM355909 Avian 7 USA 2006/08/05 108 Influenza A virus (A/Western tanager/Washington/CTR-AIV22/2006) 
HM355888 Avian 7 USA 2008/05/23 108 Influenza A virus (A/alder flycatcher/Missouri/CTR-AIV01/2008) 
HM355899 Avian 7 USA 2006/07/14 108 Influenza A virus (A/cedar waxwing/Idaho/CTR-AIV12/2006)   
HM355897 Avian 7 USA 2006/07/05 108 Influenza A virus (A/fox sparrow/Idaho/CTR-AIV10/2006)   
HM355913 Avian 7 USA 2006/08/02 108 Influenza A virus (A/golden-crowned Kinglet/Washington/CTR-AIV26/2006)   
HM355895 Avian 7 USA 2006/06/16 108 Influenza A virus (A/hermit thrush/Washington/CTR-AIV08/2006) 
HM355908 Avian 7 USA 2006/08/05 84 Influenza A virus (A/northern waterthrush/Maine/CTR-AIV21/2006) 
HM355916 Avian 7 USA 2006/08/06 108 Influenza A virus (A/song sparrow/Washington/CTR-AIV29/2006) 
GU826671 Avian 1 H11N2 Canada 2007/04/07 2281 Influenza A virus (A/thick-billed murre/Newfoundland/031/2007(H11N2)) yes
GU826678 Avian 8 H11N2 Canada 2007/04/07 848 Influenza A virus (A/thick-billed murre/Newfoundland/031/2007(H11N2)) yes
HM355907 Avian 7 USA 2006/07/04 108 Influenza A virus (A/veery/Washington/CTR-AIV20/2006) 
HM355896 Avian 7 USA 2006/07/26 108 Influenza A virus (A/western wood-pewee/Washington/CTR-AIV09/2006) 
HM355889 Avian 7 USA 2006/06/06 108 Influenza A virus (A/yellow-breasted chat/California/CTR-AIV02/2006)
    I'm interested in expert panflu damage estimates
    my current links: http://bit.ly/hFI7H ILI-charts: http://bit.ly/CcRgT
    Tags: None
  • #2
    Re: new species with flu

    And which influenzas are noted here? I admit to not understanding how to read this so could you please be more specific?

    It does concern me that so many of our song birds are on that list...I see something about H3N2 and H1N2?

    Comment

    • #3
      Re: new species with flu

      only short partials from segment 7 are availale,
      so the serotype is unclear

      these are not waterfowl
      virus is isolated from cloacal swab
      do they get it from waterfowl by drinking infected water ?
      or respiratory ? or feathers ?


      it's a short part from segment 7

      AUTHORS Fuller,T.L., Saatchi,S.S., Curd,E.E., Toffelmier,E., Thomassen,H.,
      Buermann,W., DeSante,D.F., Nott,M.P., Saracco,J.F., Ralph,C.J.,
      Alexander,J.D., Pollinger,J.P. and Smith,T.B.
      TITLE Mapping the risk of avian influenza in wild birds in the US
      JOURNAL Unpublished

      /isolation_source="cloacal swab"

      Influenza A virus (A/American robin/Washington/CTR-AIV17/2006) segment - Nucleotide - NCBI
      http://www.ncbi.nlm.nih.gov/nuccore/297242486?report=genbank


      Trevon Fuller spoke at
      Ecology and Evolution of Infectious Disease , March 2010, NJ
      I'm interested in expert panflu damage estimates
      my current links: http://bit.ly/hFI7H ILI-charts: http://bit.ly/CcRgT

      Comment

      • #4
        Re: new species with flu

        We analyze 152 passerine species including the American Robin (Turdus migratorius)
        and Swainson's Thrush (Catharus ustulatus
        Analysis of 13,046 cloacal samples collected from 225 bird species in 41 US states
        between 2005 and 2008 indicates that the average prevalence of influenza in passerines
        is greater than the prevalence in eight other avian orders
        22 species of song birds and perching birds (order Passeriformes) are influenza
        reservoirs in the contiguous US.
        Mapping the risk of avian influenza in wild birds in the US - PubMed
        http://www.ncbi.nlm.nih.gov/pubmed/20573228
        Although the prevalence of influenza in waterfowl has long been appreciated, we show that 22 species of song birds and perching birds (order Passeriformes) are influenza reservoirs in the contiguous US.
        I'm interested in expert panflu damage estimates
        my current links: http://bit.ly/hFI7H ILI-charts: http://bit.ly/CcRgT

        Comment

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