Tweet
<table border="0" cellpadding="0" cellspacing="0" width="100%"><tbody><tr valign="bottom"><td align="left">Research article
</td><td align="right">
<!-- <rdf:RDF xmlns:cc="http://web.resource.org/cc/" xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:prism="http://prismstandard.org/namespaces/1.2/basic/" xmlns:dc="http://purl.org/dc/elements/1.1/" xmlns="http://purl.org/rss/1.0/"> <cc:Work rdf:about="http://www.biomedcentral.com/1471-2334/7/84"> <cc:license rdf:resource="http://creativecommons.org/licenses/by/2.0/"/> </cc:Work> <cc:License rdf:about="http://creativecommons.org/licenses/by/2.0/"> <cc:permits rdf:resource="http://web.resource.org/cc/Reproduction"/> <cc:permits rdf:resource="http://web.resource.org/cc/Distribution"/> <cc:requires rdf:resource="http://web.resource.org/cc/Notice"/> <cc:requires rdf:resource="http://web.resource.org/cc/Attribution"/> <cc:permits rdf:resource="http://web.resource.org/cc/DerivativeWorks"/> </cc:License> <item rdf:about="http://www.biomedcentral.com/1471-2334/7/84"> <title>Identification of gene targets against dormant phase Mycobacterium tuberculosis infections</title> <dc:title>Identification of gene targets against dormant phase Mycobacterium tuberculosis infections</dc:title> <dc:creator>Murphy, Dennis J</dc:creator> <dc:creator>Brown, James R</dc:creator> <dc:identifier>info:doi/10.1186/1471-2334-7-84</dc:identifier> <dc:source>BMC Infectious Diseases 2007, 7:84</dc:source> <dc:date>2007-07-26</dc:date>
BMC Infectious Diseases</prism:publicationName>
2007-07-26</prism:publicationDate>
7</prism:volume>
1</prism:number>
Research article</prism:section>
84</prism:startingPage> </item> </rdf:RDF> -->.</td> </tr> </tbody></table>Identification of gene targets against dormant phase Mycobacterium tuberculosis infections
Dennis J Murphy
and James R Brown
BMC Infectious Diseases 2007, 7:84 doi:10.1186/1471-2334-7-84
<table class="smalltext" cellpadding="0" cellspacing="0"><tbody><tr> <td>Published</td> <td width="25"> </td> <td>26 July 2007</td> </tr> </tbody></table>
Abstract (provisional)
The complete article is available as a provisional PDF. The fully formatted PDF and HTML versions are in production.
Background
Mycobacterium tuberculosis, the causative agent of tuberculosis (TB), infects approximately 2 billion people worldwide and is the leading cause of mortality due to infectious disease. Current TB therapy involves a regimen of four antibiotics taken over a six month period. Patient compliance, cost of drugs and increasing incidence of drug resistant M. tuberculosis strains have added urgency to the development of novel TB therapies. Eradication of TB is affected by the ability of the bacterium to survive up to decades in a dormant state primarily in hypoxic granulomas in the lung and to cause recurrent infections.
Methods
The availability of M. tuberculosis genome-wide DNA microarrays has lead to the publication of several gene expression studies under simulated dormancy conditions. However, no single model best replicates the conditions of human pathogenicity. In order to identify novel TB drug targets, we performed a meta-analysis of multiple published datasets from gene expression DNA microarray experiments that modeled infection leading to and including the dormant state, along with data from genome-wide insertional mutagenesis that examined gene essentiality.
Results
Based on the analysis of these data sets following normalization, several genome wide trends were identified and used to guide the selection of targets for therapeutic development. The trends included the significant up-regulation of genes controlled by devR, down-regulation of protein and ATP synthesis, and the adaptation of two-carbon metabolism to the hypoxic and nutrient limited environment of the granuloma. Promising targets for drug discovery were several regulatory elements (devR/devS, relA, mprAB), enzymes involved in redox balance and respiration, sulfur transport and fixation, pantothenate, isoprene, and NAD biosynthesis. The advantages and liabilities of each target are discussed in the context of enzymology, bacterial pathways, target tractability, and drug development.
Conclusion
Based on our bioinformatics analysis and additional discussion of in-depth biological rationale, several novel anti-TB targets have been proposed as potential opportunities to improve present therapeutic treatments for this disease.
</td><td align="right">
<!-- <rdf:RDF xmlns:cc="http://web.resource.org/cc/" xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:prism="http://prismstandard.org/namespaces/1.2/basic/" xmlns:dc="http://purl.org/dc/elements/1.1/" xmlns="http://purl.org/rss/1.0/"> <cc:Work rdf:about="http://www.biomedcentral.com/1471-2334/7/84"> <cc:license rdf:resource="http://creativecommons.org/licenses/by/2.0/"/> </cc:Work> <cc:License rdf:about="http://creativecommons.org/licenses/by/2.0/"> <cc:permits rdf:resource="http://web.resource.org/cc/Reproduction"/> <cc:permits rdf:resource="http://web.resource.org/cc/Distribution"/> <cc:requires rdf:resource="http://web.resource.org/cc/Notice"/> <cc:requires rdf:resource="http://web.resource.org/cc/Attribution"/> <cc:permits rdf:resource="http://web.resource.org/cc/DerivativeWorks"/> </cc:License> <item rdf:about="http://www.biomedcentral.com/1471-2334/7/84"> <title>Identification of gene targets against dormant phase Mycobacterium tuberculosis infections</title> <dc:title>Identification of gene targets against dormant phase Mycobacterium tuberculosis infections</dc:title> <dc:creator>Murphy, Dennis J</dc:creator> <dc:creator>Brown, James R</dc:creator> <dc:identifier>info:doi/10.1186/1471-2334-7-84</dc:identifier> <dc:source>BMC Infectious Diseases 2007, 7:84</dc:source> <dc:date>2007-07-26</dc:date> BMC Infectious Diseases</prism:publicationName>
2007-07-26</prism:publicationDate>
7</prism:volume>
1</prism:number>
Research article</prism:section>
84</prism:startingPage> </item> </rdf:RDF> -->.</td> </tr> </tbody></table>Identification of gene targets against dormant phase Mycobacterium tuberculosis infections
Dennis J Murphy
and James R Brown BMC Infectious Diseases 2007, 7:84 doi:10.1186/1471-2334-7-84
<table class="smalltext" cellpadding="0" cellspacing="0"><tbody><tr> <td>Published</td> <td width="25"> </td> <td>26 July 2007</td> </tr> </tbody></table>
Abstract (provisional)
The complete article is available as a provisional PDF. The fully formatted PDF and HTML versions are in production.
Background
Mycobacterium tuberculosis, the causative agent of tuberculosis (TB), infects approximately 2 billion people worldwide and is the leading cause of mortality due to infectious disease. Current TB therapy involves a regimen of four antibiotics taken over a six month period. Patient compliance, cost of drugs and increasing incidence of drug resistant M. tuberculosis strains have added urgency to the development of novel TB therapies. Eradication of TB is affected by the ability of the bacterium to survive up to decades in a dormant state primarily in hypoxic granulomas in the lung and to cause recurrent infections.
Methods
The availability of M. tuberculosis genome-wide DNA microarrays has lead to the publication of several gene expression studies under simulated dormancy conditions. However, no single model best replicates the conditions of human pathogenicity. In order to identify novel TB drug targets, we performed a meta-analysis of multiple published datasets from gene expression DNA microarray experiments that modeled infection leading to and including the dormant state, along with data from genome-wide insertional mutagenesis that examined gene essentiality.
Results
Based on the analysis of these data sets following normalization, several genome wide trends were identified and used to guide the selection of targets for therapeutic development. The trends included the significant up-regulation of genes controlled by devR, down-regulation of protein and ATP synthesis, and the adaptation of two-carbon metabolism to the hypoxic and nutrient limited environment of the granuloma. Promising targets for drug discovery were several regulatory elements (devR/devS, relA, mprAB), enzymes involved in redox balance and respiration, sulfur transport and fixation, pantothenate, isoprene, and NAD biosynthesis. The advantages and liabilities of each target are discussed in the context of enzymology, bacterial pathways, target tractability, and drug development.
Conclusion
Based on our bioinformatics analysis and additional discussion of in-depth biological rationale, several novel anti-TB targets have been proposed as potential opportunities to improve present therapeutic treatments for this disease.